Query psy6393
Match_columns 315
No_of_seqs 57 out of 59
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 16:43:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05571 DUF766: Protein of un 100.0 1E-129 2E-134 916.5 25.3 284 6-310 1-296 (296)
2 KOG3744|consensus 100.0 3E-119 6E-124 833.4 20.8 289 3-314 6-309 (311)
3 PF09064 Tme5_EGF_like: Thromb 72.4 3.1 6.8E-05 29.1 2.0 30 3-39 5-34 (34)
4 PF07699 GCC2_GCC3: GCC2 and G 61.5 7 0.00015 27.6 2.1 28 18-45 5-34 (48)
5 PF05564 Auxin_repressed: Dorm 56.4 3.1 6.8E-05 36.0 -0.4 14 42-55 99-112 (119)
6 PHA02637 TNF-alpha-receptor-li 46.2 13 0.00029 32.6 1.9 10 24-33 44-53 (127)
7 PF14354 Lar_restr_allev: Rest 43.2 14 0.0003 26.9 1.3 13 2-16 2-14 (61)
8 PF09603 Fib_succ_major: Fibro 36.9 15 0.00032 31.5 0.7 32 12-55 55-86 (184)
9 PF02822 Antistasin: Antistasi 35.5 12 0.00025 24.4 -0.1 16 26-42 9-24 (26)
10 KOG0196|consensus 33.6 25 0.00055 39.4 2.0 10 21-30 273-282 (996)
11 PF12662 cEGF: Complement Clr- 33.6 26 0.00057 22.5 1.3 18 24-44 4-21 (24)
12 KOG4611|consensus 33.3 21 0.00046 37.1 1.2 26 21-46 97-122 (747)
13 smart00249 PHD PHD zinc finger 32.9 32 0.0007 22.3 1.7 23 10-33 4-26 (47)
14 PF07584 BatA: Aerotolerance r 32.1 2.3E+02 0.0051 21.7 7.6 43 84-126 34-77 (77)
15 PF14255 Cys_rich_CPXG: Cystei 31.5 27 0.00058 26.2 1.2 25 5-31 2-34 (52)
16 PF10852 DUF2651: Protein of u 31.0 96 0.0021 25.6 4.4 35 206-240 7-48 (82)
17 PF07436 Curto_V3: Curtovirus 30.4 40 0.00086 27.8 2.1 14 50-65 6-19 (87)
18 PRK13701 psiB plasmid SOS inhi 29.9 23 0.00051 31.7 0.8 18 26-43 41-58 (144)
19 PF04942 CC: CC domain; Inter 28.5 31 0.00066 24.0 1.0 15 25-39 18-32 (36)
20 PRK00944 hypothetical protein; 28.4 95 0.0021 29.2 4.5 41 108-148 18-69 (195)
21 PF00649 Copper-fist: Copper f 28.3 19 0.00042 26.1 -0.0 25 18-45 5-29 (40)
22 PF11672 DUF3268: Protein of u 27.5 47 0.001 28.0 2.2 37 3-47 2-42 (102)
23 KOG3183|consensus 24.9 43 0.00093 32.5 1.6 40 4-48 27-67 (250)
24 PF07562 NCD3G: Nine Cysteines 24.8 14 0.0003 27.1 -1.3 23 23-45 27-51 (54)
25 COG4672 gp18 Phage-related pro 23.9 42 0.00091 32.1 1.3 21 10-37 162-182 (231)
26 PF14843 GF_recep_IV: Growth f 23.8 32 0.00069 29.3 0.5 24 22-45 85-118 (132)
27 KOG2845|consensus 23.2 42 0.00091 35.4 1.3 21 5-28 172-193 (505)
28 PRK09710 lar restriction allev 23.1 50 0.0011 26.1 1.4 13 2-16 5-17 (64)
29 PF12797 Fer4_2: 4Fe-4S bindin 22.2 33 0.00071 21.9 0.2 7 2-8 6-12 (22)
30 PHA02637 TNF-alpha-receptor-li 21.3 1.1E+02 0.0025 26.9 3.4 25 20-44 61-88 (127)
31 COG0738 FucP Fucose permease [ 21.2 3.5E+02 0.0076 28.2 7.3 78 49-128 188-268 (422)
32 PTZ00382 Variant-specific surf 21.0 76 0.0016 26.1 2.2 7 22-28 20-26 (96)
33 smart00661 RPOL9 RNA polymeras 20.5 85 0.0018 21.9 2.1 30 5-36 2-35 (52)
No 1
>PF05571 DUF766: Protein of unknown function (DUF766); InterPro: IPR008485 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.1e-129 Score=916.51 Aligned_cols=284 Identities=58% Similarity=1.145 Sum_probs=278.5
Q ss_pred CCccccCceecCCCC----ccCCCCCCCceecCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHhhhccCCCCCCCcCc
Q psy6393 6 CAGLYCGRYYLPDGN----LSACEACPRGFRANALTICEPCNDSPTFYDWLYLGFMVLFPLICHWFAIDSTPQFTGSQNQ 81 (315)
Q Consensus 6 CpG~YCGR~~l~n~~----~s~CGaCPrG~R~n~~~iC~pC~d~~~~YDWlYLgFMallpL~lHwffId~~~~~~~~~~~ 81 (315)
|||+||||+.++||+ ||||||||||||+||+++|+||+|+||+||||||||||++||++||||||++
T Consensus 1 CpG~yCGR~~l~~~~~~~~~s~CGaCprG~R~n~~~iC~pC~~~~~~YDWlYL~FmallpL~lh~~fI~~~--------- 71 (296)
T PF05571_consen 1 CPGLYCGRILLENGSSTEIWSECGACPRGYRVNESSICQPCDDSPELYDWLYLGFMALLPLVLHWFFIDMY--------- 71 (296)
T ss_pred CCCcCCCCeecCCCCcccccccCCCCCCccccCCCcccccCCCCCchhhHHHHHHHHHHHHHHHHheeeee---------
Confidence 999999999998888 9999999999999999999999999999999999999999999999999998
Q ss_pred cccccchhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCCCccccccccCCCCceeeeccc
Q psy6393 82 KSAFYPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVDPVGSYQIRSCNVDKLQDWYTVFYNPNPDYEYTLHCT 161 (315)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~h~sa~lE~~laai~tlLv~~P~Gsl~L~sC~v~~LsDWYt~fyNP~pdY~~tlhCT 161 (315)
+++||++|++++||+||++|+++||++|+|++||+||++|+||+|++||||||+||||+||||+|+|||
T Consensus 72 -----------~~~~~~~~~~i~~h~sa~lE~~laai~tlLv~~P~Gsl~L~sC~v~~LsDWYt~~~NP~p~Y~~tlhCt 140 (296)
T PF05571_consen 72 -----------AKNRKFSRKVIIQHLSAFLECVLAAILTLLVYEPRGSLQLYSCRVSSLSDWYTMFYNPSPDYETTLHCT 140 (296)
T ss_pred -----------cccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeecccHHhhhhhhhCCCCCceEEecCc
Confidence 777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhccCchhHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHH
Q psy6393 162 QEAVYPLYTMVFIFYLLNIIILTSIRPLI-ARFCIRTGAARTVYFGLYLFPVLALVHLIC----DYSFAYITIVLSVVSM 236 (315)
Q Consensus 162 qEaVYPLyTivfi~y~~~l~~m~liRpll-~~~~~~~~~~k~iYaaLyf~PiLal~Hav~----YYsFPYi~iv~S~vs~ 236 (315)
||||||||||||+||+||+++|+++||++ +++.+++|++|++||||||+|||+++||++ |||||||++|+|+++|
T Consensus 141 qEaVYPLyTivfi~y~f~l~~m~liRp~l~~~~~~~~~~~k~iYaaLYf~PiL~liHav~~GLiYYsFPYi~li~Sl~s~ 220 (296)
T PF05571_consen 141 QEAVYPLYTIVFIYYAFCLVLMLLIRPILYSKFLRKSGKAKSIYAALYFFPILALIHAVFGGLIYYSFPYIVLILSLISN 220 (296)
T ss_pred cceeccceeHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHHHHH
Confidence 99999999999999999999999999999 888888899999999999999999999999 9999999999999999
Q ss_pred hHhhhhcccchHHHHHHhhhccccchhHHHHHHHHHHhhHHhcc---CcCcccceeeeccchhhhhhhhcccCCCCC
Q psy6393 237 ATHFAFKIDQSVHFLVVSTVTDLRNCLILLGHWALHAYGLVVIT---QPHVNPALIILLVPTPALFYILTSRFTDPS 310 (315)
Q Consensus 237 a~h~a~~~~qs~~~l~~~~v~~~rn~vil~~hwll~ayGiiait---~~~~~~~l~l~LVP~P~lFYilT~rfTdP~ 310 (315)
|.|+|+|+||++|++++++++++||++|+++||++|||||+||| +++.++++ |+|||+|++||++|+|||||+
T Consensus 221 a~h~a~~~~q~~~~l~~~~~~~~~~~~il~~hwll~a~giisit~~~~~~~~~~~-L~lvP~P~lFYilT~~FTdP~ 296 (296)
T PF05571_consen 221 AVHFALKIDQSMKALIVSSVTDPRNLVILFGHWLLHAYGIISITRLSDPTYHWSL-LALVPLPALFYILTAKFTDPS 296 (296)
T ss_pred HHHHHhccCcCHHHHHHHhccccceehhHHHHHHHHHHHHHHHhcccccchHhHH-HHHhhhHHHHHHhhccCCCCC
Confidence 99999999999999999999999999999999999999999998 78889999 999999999999999999996
No 2
>KOG3744|consensus
Probab=100.00 E-value=2.5e-119 Score=833.45 Aligned_cols=289 Identities=45% Similarity=0.956 Sum_probs=281.5
Q ss_pred CCCCCccccCceec-CCCC---ccCCCCCCCceecCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy6393 3 QLRCAGLYCGRYYL-PDGN---LSACEACPRGFRANALTICEPCNDSPTFYDWLYLGFMVLFPLICHWFAIDSTPQFTGS 78 (315)
Q Consensus 3 ~~~CpG~YCGR~~l-~n~~---~s~CGaCPrG~R~n~~~iC~pC~d~~~~YDWlYLgFMallpL~lHwffId~~~~~~~~ 78 (315)
|+.|.| ||||+++ +|++ +++||+||||+|+|++++||||+|+|+.|||||||||||+||++|||||||+
T Consensus 6 qp~clg-~cgrt~l~~n~s~~~y~~CGvCprG~R~Na~~~C~pC~~~l~~YdWlYLgFmamLPL~lH~fFI~~~------ 78 (311)
T KOG3744|consen 6 QPACLG-YCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWY------ 78 (311)
T ss_pred chHHHH-hhhhhhhhccCCCcceeeecCCCCccccchhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH------
Confidence 789999 9999998 6666 8999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccchhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeecccCCCCccccccccCCCCceeee
Q psy6393 79 QNQKSAFYPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVDPVGSYQIRSCNVDKLQDWYTVFYNPNPDYEYTL 158 (315)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~sa~lE~~laai~tlLv~~P~Gsl~L~sC~v~~LsDWYt~fyNP~pdY~~tl 158 (315)
+||||+|+++++||+||++|+++||++++|++||+|+++||||+|.+|+||||++|||+|||++|+
T Consensus 79 --------------~k~~rts~~~l~~~~~a~~E~~iaaiia~Li~~P~~~l~l~~C~v~~l~dWYt~~YNPsp~Y~~tv 144 (311)
T KOG3744|consen 79 --------------SKKKRTSSSALFETLCAILENAIAAIIAVLISDPVGVLYLRSCRVLMLKDWYTMLYNPSPDYVTTV 144 (311)
T ss_pred --------------hccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccceechhHHHHHhcCCCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhccC---chhHHHHHHHHHHHHHHHHHH----hhhhhHHHHH
Q psy6393 159 HCTQEAVYPLYTMVFIFYLLNIIILTSIRPLI-ARFCIRTGA---ARTVYFGLYLFPVLALVHLIC----DYSFAYITIV 230 (315)
Q Consensus 159 hCTqEaVYPLyTivfi~y~~~l~~m~liRpll-~~~~~~~~~---~k~iYaaLyf~PiLal~Hav~----YYsFPYi~iv 230 (315)
||||||||||||||||||++|+++|+++||++ +++..+ || .||+|||+||+|||+++||++ ||+||||+++
T Consensus 145 ~CT~EaVyPLytIvfi~y~~clv~m~llRpll~k~~~~g-gks~~~kpiYaAlyf~PiLtvihAvg~Gl~yY~FPYi~lv 223 (311)
T KOG3744|consen 145 HCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIACG-GKSDRFKPIYAALYFFPILTVIHAVGGGLLYYAFPYIILV 223 (311)
T ss_pred EeeeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCCCchHHHHHHHHHHHHHHHhcCceEEEechHHHHH
Confidence 99999999999999999999999999999999 888885 66 489999999999999999999 9999999999
Q ss_pred HHHHHHhHhhhhcccchHHHHHHhhhccccchhHHHHHHHHHHhhHHhcc---CcCcccceeeeccchhhhhhhhcccCC
Q psy6393 231 LSVVSMATHFAFKIDQSVHFLVVSTVTDLRNCLILLGHWALHAYGLVVIT---QPHVNPALIILLVPTPALFYILTSRFT 307 (315)
Q Consensus 231 ~S~vs~a~h~a~~~~qs~~~l~~~~v~~~rn~vil~~hwll~ayGiiait---~~~~~~~l~l~LVP~P~lFYilT~rfT 307 (315)
+|+|++|+|+|.|.||++|.|+++.+|++||++++++||+++|||++||+ +.++|+++ ++|||+|++||++|+|||
T Consensus 224 ~Slva~a~h~sle~~~~lk~lv~~iatspk~li~l~~hwlllayGiisi~~~~~~~y~~~f-KOGVP~P~lFY~~T~~Ft 302 (311)
T KOG3744|consen 224 LSLVALAVHMSLEIENCLKLLVRKIATSPKRLIVLFSHWLLLAYGIISISRVDKLEYDLPF-LCLVPTPALFYLFTAKFT 302 (311)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHhccCcceEeeeHHHHHHHHhhheeeecccccccccee-EEecccchhhheeeeccC
Confidence 99999999999999999999999999999999999999999999999998 88899999 999999999999999999
Q ss_pred CCCCCCC
Q psy6393 308 DPSHLHS 314 (315)
Q Consensus 308 dP~~~~~ 314 (315)
||+++++
T Consensus 303 ~Ps~~~~ 309 (311)
T KOG3744|consen 303 EPSRILS 309 (311)
T ss_pred Chhhhhc
Confidence 9999865
No 3
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=72.38 E-value=3.1 Score=29.10 Aligned_cols=30 Identities=27% Similarity=0.776 Sum_probs=21.8
Q ss_pred CCCCCccccCceecCCCCccCCCCCCCceecCCCccc
Q psy6393 3 QLRCAGLYCGRYYLPDGNLSACEACPRGFRANALTIC 39 (315)
Q Consensus 3 ~~~CpG~YCGR~~l~n~~~s~CGaCPrG~R~n~~~iC 39 (315)
+++||. -|. ..+-+.|- ||.||--+++++|
T Consensus 5 ~t~CpA-~CD-----pn~~~~C~-CPeGyIlde~~~c 34 (34)
T PF09064_consen 5 QTECPA-DCD-----PNSPGQCF-CPEGYILDEGSMC 34 (34)
T ss_pred cccCCC-ccC-----CCCCCcee-CCCceEecCCccC
Confidence 456775 443 23345788 9999999999887
No 4
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=61.47 E-value=7 Score=27.64 Aligned_cols=28 Identities=32% Similarity=0.800 Sum_probs=19.4
Q ss_pred CCCccCCCCCCCceec-CCC-cccccCCCC
Q psy6393 18 DGNLSACEACPRGFRA-NAL-TICEPCNDS 45 (315)
Q Consensus 18 n~~~s~CGaCPrG~R~-n~~-~iC~pC~d~ 45 (315)
|.....|.+||+|+=. +++ ..|.+|...
T Consensus 5 ~~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g 34 (48)
T PF07699_consen 5 DSGNNKCQPCPKGTYQDEEGQTSCTPCPPG 34 (48)
T ss_pred CCCCCccCCCCCCccCCccCCccCccCcCC
Confidence 3445789999999644 333 469999765
No 5
>PF05564 Auxin_repressed: Dormancy/auxin associated protein; InterPro: IPR008406 This family contains several plant dormancy-associated and auxin-repressed proteins the function of which is poorly understood [].
Probab=56.36 E-value=3.1 Score=35.96 Aligned_cols=14 Identities=64% Similarity=1.277 Sum_probs=11.2
Q ss_pred CCCCCCchhHHHHH
Q psy6393 42 CNDSPTFYDWLYLG 55 (315)
Q Consensus 42 C~d~~~~YDWlYLg 55 (315)
=-++|+.|||||=|
T Consensus 99 ~PnSPTVYDWlys~ 112 (119)
T PF05564_consen 99 EPNSPTVYDWLYSG 112 (119)
T ss_pred CCCCCceeeeecCC
Confidence 34789999999954
No 6
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=46.22 E-value=13 Score=32.58 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=4.7
Q ss_pred CCCCCCceec
Q psy6393 24 CEACPRGFRA 33 (315)
Q Consensus 24 CGaCPrG~R~ 33 (315)
|-.||.|+|.
T Consensus 44 C~kCPPGt~v 53 (127)
T PHA02637 44 CLSCPPGTYA 53 (127)
T ss_pred cCCCCCCCEE
Confidence 4444555444
No 7
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=43.18 E-value=14 Score=26.91 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=10.6
Q ss_pred CCCCCCccccCceec
Q psy6393 2 DQLRCAGLYCGRYYL 16 (315)
Q Consensus 2 ~~~~CpG~YCGR~~l 16 (315)
++.+|| |||....
T Consensus 2 ~LkPCP--FCG~~~~ 14 (61)
T PF14354_consen 2 ELKPCP--FCGSADV 14 (61)
T ss_pred CCcCCC--CCCCcce
Confidence 578999 9997755
No 8
>PF09603 Fib_succ_major: Fibrobacter succinogenes major domain (Fib_succ_major); InterPro: IPR011871 This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes subsp. succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulphide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.
Probab=36.86 E-value=15 Score=31.47 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=20.2
Q ss_pred CceecCCCCccCCCCCCCceecCCCcccccCCCCCCchhHHHHH
Q psy6393 12 GRYYLPDGNLSACEACPRGFRANALTICEPCNDSPTFYDWLYLG 55 (315)
Q Consensus 12 GR~~l~n~~~s~CGaCPrG~R~n~~~iC~pC~d~~~~YDWlYLg 55 (315)
||...-+.-....|+||-|||. |+.-||--|.
T Consensus 55 G~lY~w~~a~~~~~~CP~GWrl------------Pt~~Ew~~L~ 86 (184)
T PF09603_consen 55 GRLYNWNAAMDAQGICPEGWRL------------PTRAEWNSLF 86 (184)
T ss_pred cccccHHHhcccCCCCCCCCCC------------CCHHHHHHHH
Confidence 4544422222337999999997 4556887665
No 9
>PF02822 Antistasin: Antistasin family; InterPro: IPR004094 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This group of serine protease inhibitors belong to MEROPS inhibitor family I15, clan IO. They inhibit serine peptidases of the S1 family (IPR001254 from INTERPRO) [] and are characterised by a well conserved pattern of cysteine residues. Many of the proteins that belong to this family are anti-coagulants.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1HIA_I 1BX8_A 1BX7_A 3BG4_D 1C9P_B 1EJA_B 1SKZ_A.
Probab=35.47 E-value=12 Score=24.35 Aligned_cols=16 Identities=38% Similarity=1.099 Sum_probs=8.9
Q ss_pred CCCCceecCCCcccccC
Q psy6393 26 ACPRGFRANALTICEPC 42 (315)
Q Consensus 26 aCPrG~R~n~~~iC~pC 42 (315)
.||.||+.|+ .=|+-|
T Consensus 9 ~C~~Gf~~D~-~GC~~C 24 (26)
T PF02822_consen 9 YCPYGFKTDE-NGCPTC 24 (26)
T ss_dssp --TT-EEE-T-TSSEEE
T ss_pred cCCCcccCCC-CCCCcC
Confidence 4999999995 456655
No 10
>KOG0196|consensus
Probab=33.64 E-value=25 Score=39.40 Aligned_cols=10 Identities=60% Similarity=1.281 Sum_probs=5.8
Q ss_pred ccCCCCCCCc
Q psy6393 21 LSACEACPRG 30 (315)
Q Consensus 21 ~s~CGaCPrG 30 (315)
-..|.|||.|
T Consensus 273 ~~~C~aCp~G 282 (996)
T KOG0196|consen 273 GKACQACPPG 282 (996)
T ss_pred CCcceeCCCC
Confidence 3456666666
No 11
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=33.63 E-value=26 Score=22.50 Aligned_cols=18 Identities=33% Similarity=1.034 Sum_probs=11.7
Q ss_pred CCCCCCceecCCCcccccCCC
Q psy6393 24 CEACPRGFRANALTICEPCND 44 (315)
Q Consensus 24 CGaCPrG~R~n~~~iC~pC~d 44 (315)
|. ||.||+.++.. ..|.|
T Consensus 4 C~-C~~Gy~l~~d~--~~C~D 21 (24)
T PF12662_consen 4 CS-CPPGYQLSPDG--RSCED 21 (24)
T ss_pred ee-CCCCCcCCCCC--Ccccc
Confidence 64 99999975443 34444
No 12
>KOG4611|consensus
Probab=33.33 E-value=21 Score=37.07 Aligned_cols=26 Identities=31% Similarity=0.628 Sum_probs=22.5
Q ss_pred ccCCCCCCCceecCCCcccccCCCCC
Q psy6393 21 LSACEACPRGFRANALTICEPCNDSP 46 (315)
Q Consensus 21 ~s~CGaCPrG~R~n~~~iC~pC~d~~ 46 (315)
-.-||.|..||-.|+...|.+|+.+-
T Consensus 97 dafcgncasgfyrndngyctkcetsc 122 (747)
T KOG4611|consen 97 DAFCGNCASGFYRNDNGYCTKCETSC 122 (747)
T ss_pred ccccccccccceECCCcccccccccH
Confidence 35699999999888899999998764
No 13
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=32.07 E-value=2.3e+02 Score=21.66 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=26.8
Q ss_pred cccchhhhhhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6393 84 AFYPIRTFKAKKKNF-NKEALILHFTAFVEVSLAAVLTLLLVDP 126 (315)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~l~~h~sa~lE~~laai~tlLv~~P 126 (315)
.|=..+-|+...++. +++....|+-..+.+..-+.+.+-+..|
T Consensus 34 ~fs~~~~l~~~~~~~~~~~~~~~~l~l~L~lLal~lli~AlArP 77 (77)
T PF07584_consen 34 RFSSLRLLKRLPPSRRSWRRLRRHLLLLLRLLALALLILALARP 77 (77)
T ss_pred ccCCHHHHHHhCcccchhHHHhhhHHHHHHHHHHHHHHHHHcCc
Confidence 444445554433321 2345788888888888777777766655
No 15
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=31.54 E-value=27 Score=26.17 Aligned_cols=25 Identities=32% Similarity=0.938 Sum_probs=17.2
Q ss_pred CCCccccCceec-----CCCC---ccCCCCCCCce
Q psy6393 5 RCAGLYCGRYYL-----PDGN---LSACEACPRGF 31 (315)
Q Consensus 5 ~CpG~YCGR~~l-----~n~~---~s~CGaCPrG~ 31 (315)
.|| |||-... ++|. .-+|++|=|--
T Consensus 2 ~CP--yCge~~~~~iD~s~~~Q~yiEDC~vCC~PI 34 (52)
T PF14255_consen 2 QCP--YCGEPIEILIDPSAGDQEYIEDCQVCCRPI 34 (52)
T ss_pred CCC--CCCCeeEEEEecCCCCeeEEeehhhcCCcc
Confidence 488 9998865 3333 67899986543
No 16
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=30.95 E-value=96 Score=25.59 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHhHhh
Q psy6393 206 GLYLFPVLALVHLIC-------DYSFAYITIVLSVVSMATHF 240 (315)
Q Consensus 206 aLyf~PiLal~Hav~-------YYsFPYi~iv~S~vs~a~h~ 240 (315)
++..+|+++.+-.+. +|--|-++.+.|++-+-.-+
T Consensus 7 vlfi~Plli~i~sI~Gt~l~k~~yimPivtf~i~Lil~~t~f 48 (82)
T PF10852_consen 7 VLFILPLLIIIISIIGTYLFKKVYIMPIVTFAISLILTFTLF 48 (82)
T ss_pred HHHHhhHHHHHHHHHHhhhcceeehHHHHHHHHHHHHHHHhh
Confidence 677788888887777 88888888888877665544
No 17
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=30.36 E-value=40 Score=27.79 Aligned_cols=14 Identities=43% Similarity=1.184 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy6393 50 DWLYLGFMVLFPLICH 65 (315)
Q Consensus 50 DWlYLgFMallpL~lH 65 (315)
||+||+|+ +..+++
T Consensus 6 DWlFLlFi--fsillQ 19 (87)
T PF07436_consen 6 DWLFLLFI--FSILLQ 19 (87)
T ss_pred hHHHHHHH--HHHHHh
Confidence 99999998 455554
No 18
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=29.90 E-value=23 Score=31.74 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.9
Q ss_pred CCCCceecCCCcccccCC
Q psy6393 26 ACPRGFRANALTICEPCN 43 (315)
Q Consensus 26 aCPrG~R~n~~~iC~pC~ 43 (315)
+||.|||+|+.+-|+-|-
T Consensus 41 ~~P~gW~~naEy~sEFgG 58 (144)
T PRK13701 41 DAPDGWTMNGEYGSEFGG 58 (144)
T ss_pred CCCccceeehhhhccccC
Confidence 599999999999998773
No 19
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=28.52 E-value=31 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.8
Q ss_pred CCCCCceecCCCccc
Q psy6393 25 EACPRGFRANALTIC 39 (315)
Q Consensus 25 GaCPrG~R~n~~~iC 39 (315)
|+||.|+.......|
T Consensus 18 G~CP~G~~~i~g~~C 32 (36)
T PF04942_consen 18 GVCPSGYTVITGNGC 32 (36)
T ss_pred CcCCCCCEEECCCcc
Confidence 899999999866666
No 20
>PRK00944 hypothetical protein; Provisional
Probab=28.44 E-value=95 Score=29.22 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcC-----CcceEEeee------cccCCCCccccccc
Q psy6393 108 TAFVEVSLAAVLTLLLVD-----PVGSYQIRS------CNVDKLQDWYTVFY 148 (315)
Q Consensus 108 sa~lE~~laai~tlLv~~-----P~Gsl~L~s------C~v~~LsDWYt~fy 148 (315)
.+.+-.++.....++.+. |-|...|-+ =+-|+++||||.-|
T Consensus 18 ~~~~~~~~~~a~~L~~mGR~pIC~CG~vkLw~g~v~ss~NSQhlsDWYt~SH 69 (195)
T PRK00944 18 LAALAVLALQALILYAMGRVPICECGYVKLWHGVVNSSENSQHLSDWYTPSH 69 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccCcceEeeccccCCCCccccccccccHHH
Confidence 344444444444555542 345555543 34468999999877
No 21
>PF00649 Copper-fist: Copper fist DNA binding domain; InterPro: IPR001083 Some fungal transcription factors contain an N-terminal domain, the copper fist, which seems to be involved in copper-dependent DNA-binding [, ]. These proteins activate the transcription of the metallothionein gene in response to copper. Metallothionein maintains copper levels in yeast [, ]. The copper fist domain, which is similar in structure to metallothionein itself, undergoes a large conformational change on copper-binding that allows DNA-binding. The domain contains a conserved array of zinc-binding residues (Cys-X2-Cys-X8-Cys-X-His) and forms a three-stranded antiparallel beta-sheet with two short helical segments that project from one end of the beta-sheet []. Conserved residues form a basic patch that may be important for DNA binding. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0005507 copper ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1CO4_A.
Probab=28.34 E-value=19 Score=26.06 Aligned_cols=25 Identities=40% Similarity=0.881 Sum_probs=15.8
Q ss_pred CCCccCCCCCCCceecCCCcccccCCCC
Q psy6393 18 DGNLSACEACPRGFRANALTICEPCNDS 45 (315)
Q Consensus 18 n~~~s~CGaCPrG~R~n~~~iC~pC~d~ 45 (315)
||.--.|.+|=||+|+. -|.-.+.+
T Consensus 5 ~g~KyAC~~CirGHRss---~C~H~dR~ 29 (40)
T PF00649_consen 5 DGEKYACESCIRGHRSS---TCNHTDRP 29 (40)
T ss_dssp TTEEEEETTTTTTSGGG---G----SS-
T ss_pred CCeEEEhhhhhCccccC---cccCCCcc
Confidence 66666799999999975 56655443
No 22
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.48 E-value=47 Score=28.02 Aligned_cols=37 Identities=35% Similarity=0.756 Sum_probs=22.5
Q ss_pred CCCCCccccCceec-CCCCccCCCCCCCceecCC---CcccccCCCCCC
Q psy6393 3 QLRCAGLYCGRYYL-PDGNLSACEACPRGFRANA---LTICEPCNDSPT 47 (315)
Q Consensus 3 ~~~CpG~YCGR~~l-~n~~~s~CGaCPrG~R~n~---~~iC~pC~d~~~ 47 (315)
+..|| |||+... .+++ -. -|.|.++ .++|++|+...-
T Consensus 2 p~~Cp--YCg~~~~l~~~~----~i--Yg~~~~~~~~~y~C~~C~AyVG 42 (102)
T PF11672_consen 2 PIICP--YCGGPAELVDGS----EI--YGHRYDDGPYLYVCTPCDAYVG 42 (102)
T ss_pred CcccC--CCCCeeEEcccc----hh--cCccCCCCceeEECCCCCceee
Confidence 46799 9999866 3332 11 3344322 278999986543
No 23
>KOG3183|consensus
Probab=24.94 E-value=43 Score=32.52 Aligned_cols=40 Identities=25% Similarity=0.654 Sum_probs=26.3
Q ss_pred CCCCccccCceecCCCCccCCCCCCCceecCCC-cccccCCCCCCc
Q psy6393 4 LRCAGLYCGRYYLPDGNLSACEACPRGFRANAL-TICEPCNDSPTF 48 (315)
Q Consensus 4 ~~CpG~YCGR~~l~n~~~s~CGaCPrG~R~n~~-~iC~pC~d~~~~ 48 (315)
+.|-|.||--... -+=--||+|+|-|+. .+|+-|+.+.+.
T Consensus 27 d~C~~~FC~eHrs-----ye~H~Cp~~~~~~~~v~icp~cs~pv~~ 67 (250)
T KOG3183|consen 27 DGCSGIFCLEHRS-----YESHHCPKGLRIDVQVPICPLCSKPVPT 67 (250)
T ss_pred CCccchhhhccch-----HhhcCCCcccccceeecccCCCCCCCCC
Confidence 3466666643322 111249999999887 899999877653
No 24
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=24.79 E-value=14 Score=27.09 Aligned_cols=23 Identities=35% Similarity=0.827 Sum_probs=14.9
Q ss_pred CCCCCCCceecC--CCcccccCCCC
Q psy6393 23 ACEACPRGFRAN--ALTICEPCNDS 45 (315)
Q Consensus 23 ~CGaCPrG~R~n--~~~iC~pC~d~ 45 (315)
+|-.||.|.-+| ...-|.+|.+.
T Consensus 27 ~C~~C~~~~is~~~~~~~C~~C~~~ 51 (54)
T PF07562_consen 27 DCVPCPEGEISNQTDSTSCTKCPEG 51 (54)
T ss_dssp EEEE--TTEEEE--ETTEEEE--TT
T ss_pred EeecCCCCcEECCCCccccccCCCc
Confidence 577899999888 56789998763
No 25
>COG4672 gp18 Phage-related protein [Function unknown]
Probab=23.88 E-value=42 Score=32.11 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=16.1
Q ss_pred ccCceecCCCCccCCCCCCCceecCCCc
Q psy6393 10 YCGRYYLPDGNLSACEACPRGFRANALT 37 (315)
Q Consensus 10 YCGR~~l~n~~~s~CGaCPrG~R~n~~~ 37 (315)
+=||+.+.|- |+|+||.++..
T Consensus 162 ~P~Rqm~an~-------C~W~YRg~eCg 182 (231)
T COG4672 162 FPGRQMLANT-------CTWDYRGDECG 182 (231)
T ss_pred cccceeeccc-------ccceecCCCCC
Confidence 4478888765 99999998654
No 26
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=23.84 E-value=32 Score=29.28 Aligned_cols=24 Identities=33% Similarity=1.110 Sum_probs=15.1
Q ss_pred cCC-CCCCCc---------eecCCCcccccCCCC
Q psy6393 22 SAC-EACPRG---------FRANALTICEPCNDS 45 (315)
Q Consensus 22 s~C-GaCPrG---------~R~n~~~iC~pC~d~ 45 (315)
+.| -.||+| +-+++..+|+||...
T Consensus 85 ~~Cv~~CP~~~~~~~~~~~~~~~~~~~C~~Ch~~ 118 (132)
T PF14843_consen 85 GQCVSSCPEGTYGENFPIYYYPDSNGVCQPCHPS 118 (132)
T ss_dssp TEEESS--EEEEBTTSEEEEEE-TTSBEEE-STT
T ss_pred CcccCcCCCCCccccccceecCCCCCccCCcCcc
Confidence 345 479999 577888999999865
No 27
>KOG2845|consensus
Probab=23.17 E-value=42 Score=35.45 Aligned_cols=21 Identities=33% Similarity=1.010 Sum_probs=15.1
Q ss_pred CCCccccCceec-CCCCccCCCCCC
Q psy6393 5 RCAGLYCGRYYL-PDGNLSACEACP 28 (315)
Q Consensus 5 ~CpG~YCGR~~l-~n~~~s~CGaCP 28 (315)
-|.| |||++. -+|+ +.||-|-
T Consensus 172 NCL~--CGkIVCeQEGs-GPC~fCg 193 (505)
T KOG2845|consen 172 NCLG--CGKIVCEQEGS-GPCGFCG 193 (505)
T ss_pred cccc--cceeEEEecCc-ccccccC
Confidence 4887 999998 4554 7777553
No 28
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=23.11 E-value=50 Score=26.07 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=10.8
Q ss_pred CCCCCCccccCceec
Q psy6393 2 DQLRCAGLYCGRYYL 16 (315)
Q Consensus 2 ~~~~CpG~YCGR~~l 16 (315)
.+.+|| |||-..+
T Consensus 5 ~lKPCP--FCG~~~~ 17 (64)
T PRK09710 5 NVKPCP--FCGCPSV 17 (64)
T ss_pred cccCCC--CCCCcee
Confidence 468999 9999876
No 29
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=22.23 E-value=33 Score=21.87 Aligned_cols=7 Identities=57% Similarity=1.061 Sum_probs=5.2
Q ss_pred CCCCCCc
Q psy6393 2 DQLRCAG 8 (315)
Q Consensus 2 ~~~~CpG 8 (315)
|+++|-|
T Consensus 6 D~~rCiG 12 (22)
T PF12797_consen 6 DLERCIG 12 (22)
T ss_pred ccccccC
Confidence 6777777
No 30
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=21.31 E-value=1.1e+02 Score=26.92 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=18.6
Q ss_pred CccCCCCCCCceec---CCCcccccCCC
Q psy6393 20 NLSACEACPRGFRA---NALTICEPCND 44 (315)
Q Consensus 20 ~~s~CGaCPrG~R~---n~~~iC~pC~d 44 (315)
+-+.|.+||.|.=+ |...-|.+|++
T Consensus 61 t~T~C~PCp~GTYTe~~N~~~~C~~C~~ 88 (127)
T PHA02637 61 TNTQCTPCGSGTFTSHNNHLPACLSCNG 88 (127)
T ss_pred CCcccccCCCCCeeccCCCCCcccccCC
Confidence 36799999999643 65667877774
No 31
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=21.19 E-value=3.5e+02 Score=28.23 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCCCCCcCccccc---cchhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6393 49 YDWLYLGFMVLFPLICHWFAIDSTPQFTGSQNQKSAF---YPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVD 125 (315)
Q Consensus 49 YDWlYLgFMallpL~lHwffId~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~h~sa~lE~~laai~tlLv~~ 125 (315)
-.|.|++....+.++.=-+..-..|+-.-.++|+.+. -+.+-|+. |.+...++.+-+..-.|+.....+--...|
T Consensus 188 v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~--~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~ 265 (422)
T COG0738 188 VQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQN--KHLRLGVLAIFLYVGAEVAIGSFLVSYLEE 265 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhC--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4688999887777777667777777777766666554 34454433 335778999999999999999988888888
Q ss_pred Ccc
Q psy6393 126 PVG 128 (315)
Q Consensus 126 P~G 128 (315)
+.|
T Consensus 266 ~~g 268 (422)
T COG0738 266 LLG 268 (422)
T ss_pred cCC
Confidence 755
No 32
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=21.03 E-value=76 Score=26.09 Aligned_cols=7 Identities=43% Similarity=1.094 Sum_probs=3.9
Q ss_pred cCCCCCC
Q psy6393 22 SACEACP 28 (315)
Q Consensus 22 s~CGaCP 28 (315)
++|=+|+
T Consensus 20 ~~C~~C~ 26 (96)
T PTZ00382 20 SGCVLCS 26 (96)
T ss_pred CcCCcCC
Confidence 4466665
No 33
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=20.55 E-value=85 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.377 Sum_probs=21.0
Q ss_pred CCCccccCceec-C--CC-CccCCCCCCCceecCCC
Q psy6393 5 RCAGLYCGRYYL-P--DG-NLSACEACPRGFRANAL 36 (315)
Q Consensus 5 ~CpG~YCGR~~l-~--n~-~~s~CGaCPrG~R~n~~ 36 (315)
-|| -||..+. . ++ ..-.|..|+..+|.++.
T Consensus 2 FCp--~Cg~~l~~~~~~~~~~~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 2 FCP--KCGNMLIPKEGKEKRRFVCRKCGYEEPIEQK 35 (52)
T ss_pred CCC--CCCCccccccCCCCCEEECCcCCCeEECCCc
Confidence 377 4898776 2 12 35679999999988755
Done!