RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6393
(315 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.19
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 32/120 (26%)
Query: 184 TSIRPLIARFCIRTGAARTVYFGLYLFPVLALV-HLICDYSFAYITIVLSVVSMATHF-- 240
T+ L+ +F L V L+ VL++ T F
Sbjct: 55 TTPAELVGKF-------------------LGYVSSLVEPSKVGQFDQVLNLC--LTEFEN 93
Query: 241 AFKIDQSVHFLVVSTVTDLRNCLILLGHWALHAY-GLVVITQPHVNPALIILLVPTPALF 299
+ +H L + + L+ + ++ +P ALF
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-------SNSALF 146
Score = 31.2 bits (70), Expect = 0.52
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 35/136 (25%)
Query: 207 LYL-FPV------LALVHLICDYSFAYITIVLSV-VSMATHFAFKIDQSVH----FLVVS 254
LY A H Y F+ + IV++ V++ HF + + + ++
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 255 TVTDLR-NCLILLGHWALHAYGLV-----------VITQPHVNPALIILLVPTPALFYIL 302
T+ D + + H+ TQ PA + L+ A F L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ----PA--LTLM-EKAAFEDL 1747
Query: 303 TSRFTDPSHL----HS 314
S+ P+ HS
Sbjct: 1748 KSKGLIPADATFAGHS 1763
Score = 30.4 bits (68), Expect = 0.89
Identities = 37/250 (14%), Positives = 68/250 (27%), Gaps = 111/250 (44%)
Query: 108 TAFVEVSLAAVLTLLLVDPVGSYQIRSCNVDKLQDWYTVFYNPN--PDYEYTLHC----- 160
++ S A L+ L+ + + ++ + ++ + +W NP+ PD +Y L
Sbjct: 185 GDLIKFS-AETLSELIRTTLDAEKVFTQGLN-ILEWLE---NPSNTPDKDYLLSIPISCP 239
Query: 161 ----TQEAVY----------P----------------LYTMVFI--------FYLLNIII 182
Q A Y P L T V I F++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 183 LT----------------SIRPLIARFCIRTG--------AARTVYFGLYLFPVLALVHL 218
+T S+ P I + + L V V+
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNK 355
Query: 219 ICDYSFAYITIVLSVVSMATHF----------AF-----------KIDQS---------- 247
+ A + +S+V+ A + +DQS
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 248 --VHFLVVST 255
FL V++
Sbjct: 416 FSNRFLPVAS 425
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A
{Homo sapiens} PDB: 3thm_F*
Length = 156
Score = 31.3 bits (70), Expect = 0.23
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 11 CGRYYLPDGNLSACEACPRGFRANA-------LTICEPCNDSPTFYD 50
DG + CP G R C PC + + D
Sbjct: 32 NLEGLHHDGQFC-HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTD 77
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 30.8 bits (69), Expect = 0.29
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 11 CGRYYLPDGNLSACEACPRGFRANAL-------TICEPC 42
G+Y P N C C +G T C C
Sbjct: 7 QGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCREC 45
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 30.5 bits (68), Expect = 0.40
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 11 CGRYYLPDGNLSACEACPRGFR------ANALTICEPC 42
G Y L C+ C G + TIC C
Sbjct: 4 QGVSYYNSQELKCCKLCKPGTYSDHRCDKYSDTICGHC 41
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 27.7 bits (61), Expect = 3.1
Identities = 5/28 (17%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 24 CEACPRG-FRANALTICEPCNDSPTFYD 50
CP G + C C +
Sbjct: 25 EGLCPPGHHISEDGRDCISCKYGQDYST 52
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve
growth factor, NGF, neurotrophin, common neurotrophin
receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 27.4 bits (60), Expect = 3.7
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 14 YYLPDGNLSACEACPRGFRANAL-----TICEPCNDSPTF 48
Y G C+AC G T+CEPC D+ TF
Sbjct: 8 LYTHSGE--CCKACNLGEGVAQPCGANQTVCEPCLDNVTF 45
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood
coagulation, mutant, W279F, oxyanion, transferase; 2.00A
{Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Length = 731
Score = 28.1 bits (62), Expect = 4.4
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 66 WFAIDSTPQFTGSQNQKSAFYPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVD 125
W A+DSTPQ + ++ K + FV + + L +
Sbjct: 392 WQAVDSTPQENSDGMYRCGPASVQAIK------HGHVCFQFDAPFVFAEVNSDLIYITAK 445
Query: 126 PVGSYQIRSCN 136
G++ + + +
Sbjct: 446 KDGTHVVENVD 456
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.4
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 13/26 (50%)
Query: 13 RYYLPDGNLSACEACPRGFRANALTI 38
+ Y D SA P AL I
Sbjct: 30 KLYADD---SA----P------ALAI 42
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 27.6 bits (60), Expect = 5.9
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 11 CGRYYLPDGNLSA---CEACPRGFR------ANALTICEPCNDSPTFYD 50
G Y D C+ CP G +L +C C TF
Sbjct: 10 IGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVG-TFTR 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 6.8
Identities = 42/321 (13%), Positives = 92/321 (28%), Gaps = 93/321 (28%)
Query: 16 LPDGNLSACEACPRGFRANALTIC-EPCNDSPTFYD-WLYLGFMVLFPLICHWFAIDSTP 73
LP PR L+I E D +D W ++ L +I
Sbjct: 318 LP---REVLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTII---------- 359
Query: 74 QFTGSQNQKSAFYPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVDPVGSYQIR 133
+ + +K F++ ++ F + +L+L+ D
Sbjct: 360 ---------ESSLNVLEPAEYRKMFDRLSV---FPPSAHIP-TILLSLIWFDV--IKSDV 404
Query: 134 SCNVDKLQDWYTVFYNPNPDYEYTLHCTQEAVYPLYTMVFIFYLLNIIILTSI-RPLIAR 192
V+KL + V P + ++ +++ + + ++ R ++
Sbjct: 405 MVVVNKLHKYSLVEKQPK-ESTISIP-----------SIYLELKVKLENEYALHRSIVDH 452
Query: 193 FCIRTGAARTVYFGLYLFPVLALVHLICD-YSFAYITIVLSVVSMATHFAF--KIDQSVH 249
+ I + L P D Y +++I L + +
Sbjct: 453 YNIPKT-----FDSDDLIP------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 250 FL----------------VVSTVTDLR--------NC------LILLGHWALHAYGLVVI 279
FL +++T+ L+ N + + + L +I
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLI 560
Query: 280 TQPHVNPALIILLVPTPALFY 300
+ + I L+ A+F
Sbjct: 561 CSKYTDLLRIALMAEDEAIFE 581
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 25.1 bits (55), Expect = 7.7
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 11 CGRYYLPDGNLSACEACPRGF 31
C + G + C+ CPR +
Sbjct: 17 CQQ----GGEIILCDTCPRAY 33
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 27.3 bits (60), Expect = 8.2
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 66 WFAIDSTPQFTGSQNQKSAFYPIRTFKAKKKNFNKEALILHFTAFVEVSLAAVLTLLLVD 125
W A+D TPQ P+R K + + FV + A + +
Sbjct: 354 WQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYD------APFVFAEVNADVVDWIQQ 407
Query: 126 PVGSYQIRSCN 136
GS
Sbjct: 408 DDGSVHKSINR 418
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 24.6 bits (54), Expect = 8.3
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 11 CGRYYLPDGNLSACEACPRGF 31
C + G L C+ C R +
Sbjct: 15 CRK----SGQLLMCDTCSRVY 31
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 26.4 bits (57), Expect = 9.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 1 MDQLRCAGLYCGRYYLPDGNLSACEACPRGF---RANALTICEPCNDSPT 47
+ + G + + + CE CP GF ++A C P T
Sbjct: 101 LHRSCSPGFGVKQIATGVSD-TICEPCPVGFFSNVSSAFEKCHPWTSCET 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.143 0.466
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,943,146
Number of extensions: 288676
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 32
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.5 bits)