RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6393
         (315 letters)



>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 29.5 bits (66), Expect = 0.059
 Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 7/41 (17%)

Query: 11 CGRYYLPDGNLSACEACPRGFRANA-------LTICEPCND 44
           G+Y  P  N   C  C +G             T C  C  
Sbjct: 5  QGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECES 45


>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor
          p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 55

 Score = 28.7 bits (64), Expect = 0.12
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)

Query: 24 CEACPRGFR-----ANALTICEPCNDSPTFYD 50
          C+AC  G           T+CEPC D+ TF D
Sbjct: 15 CKACNLGEGVAQPCGANQTVCEPCLDNVTFSD 46


>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor
          p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 42

 Score = 27.5 bits (61), Expect = 0.25
 Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 6/26 (23%)

Query: 23 ACEACPRGFRANAL------TICEPC 42
          AC  C  G            T+CE C
Sbjct: 1  ACSVCEVGSGLVFSCQDKQNTVCEEC 26



 Score = 24.4 bits (53), Expect = 2.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 24 CEACPRGFRANALTICEPC 42
          CE CP G  ++     +PC
Sbjct: 23 CEECPEGTYSDEANHVDPC 41


>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 64

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)

Query: 11 CGRYYLPDGNLSACEACPRGFRANALTICEPCNDSPTFYDWL 52
          CG  Y  D     C+ C   F    + I      +     + 
Sbjct: 12 CGESYAADEFWICCDLCEMWFHGKCVKI--TPARAEHIKQYK 51


>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 56

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 3/22 (13%)

Query: 24 CEACPRGF---RANALTICEPC 42
          CE CP G      N L+ C  C
Sbjct: 34 CEPCPPGTYIAHLNGLSKCLQC 55


>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 72

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 3/28 (10%)

Query: 4  LRCAGLYCGRYYLPDGNLSACEACPRGF 31
          + C    CG        + AC+ C    
Sbjct: 17 VDC---KCGTKDDDGERMLACDGCGVWH 41


>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 79

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 10 YCGRYYLPDGNLSACEACPRGFRANALTICEPCNDSPTFY 49
           C + Y  +  +  C  C   F  + + I E        Y
Sbjct: 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIY 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.466 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,230,090
Number of extensions: 57067
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 13
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)