BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6394
(1045 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 148/220 (67%), Gaps = 2/220 (0%)
Query: 682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
P++G+ K M K+M+ A IP +EVD T+L ++ ++ + + +KL++MPFF+K
Sbjct: 35 PVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLK 93
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
A SL + + PILNAS+D +NI HNI IA+DT+ GL+VPN+K+V + +I E
Sbjct: 94 AASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATE 153
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
L R+Q G++ D+ GGT ++SN+G++GGT +P+I+P +V I A G I+ LPRF+
Sbjct: 154 LNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFN 213
Query: 862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
+ + I+NV+W+ADHR++DGATV+R + LWKS LEN
Sbjct: 214 EKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLEN 253
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 107/152 (70%)
Query: 892 ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKV 951
A++ ++ +NI HNI IA+DT+ GL+VPN+K+V S+ +I EL R+Q G++
Sbjct: 107 ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQL 166
Query: 952 LPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNV 1011
D+ GGT ++SN+G++GGT +P+I+P +V I A G I+ LPRF+ + V I+NV
Sbjct: 167 STNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNV 226
Query: 1012 TWAADHRVVDGATVARAATLWKSLVENPALLL 1043
+W+ADHR++DGATV+R + LWKS +ENPA +L
Sbjct: 227 SWSADHRIIDGATVSRFSNLWKSYLENPAFML 258
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 616 IRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKE 653
++G+ K M K+M+ A IP +EVD T+L +++E
Sbjct: 36 VKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREE 73
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 8/226 (3%)
Query: 683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
+ G + + K+M + +T P + L +E D T+L + + A+ EK +KLT++P+ +K
Sbjct: 19 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 77
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
AL + E+P+LN SID E I+ +NI IA DT GL+VP IK ++ + + +E
Sbjct: 78 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 137
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF- 860
+ + + +GK+ P +++G + +++N+G+ GG P+I +V I+ G+I P
Sbjct: 138 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 197
Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
D E IVA +L ++ + DHR++DGAT +A ++ +L +P+
Sbjct: 198 DGE--IVAAPMLALSLSFDHRMIDGATAQKA---LNHIKRLLSDPE 238
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
E I+ +NI IA DT GL+VP IK ++ + + +E+ + + +GK+ P +++G
Sbjct: 98 EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 157
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
+ +++N+G+ GG P+I +V I+ G+I P D E +VA +L ++ + DH
Sbjct: 158 ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGE--IVAAPMLALSLSFDH 215
Query: 1018 RVVDGATVARAATLWKSLVENPALLL 1043
R++DGAT +A K L+ +P LLL
Sbjct: 216 RMIDGATAQKALNHIKRLLSDPELLL 241
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
+ G + + K+M + +T P + L +E D T+L + + A+ EK +KLT++P+ +K
Sbjct: 203 MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFLPYVVK 261
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
AL + E+P+LN SID E I+ +NI IA DT GL+VP IK ++ + + +E
Sbjct: 262 ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 321
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF- 860
+ + + +GK+ P +++G + +++N+G+ GG P+I +V I+ G+I P
Sbjct: 322 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR 381
Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
D E IVA +L ++ + DHR++DGAT +A K L
Sbjct: 382 DGE--IVAAPMLALSLSFDHRMIDGATAQKALNHIKRL 417
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
E I+ +NI IA DT GL+VP IK ++ + + +E+ + + +GK+ P +++G
Sbjct: 282 EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 341
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
+ +++N+G+ GG P+I +V I+ G+I P D E +VA +L ++ + DH
Sbjct: 342 ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGE--IVAAPMLALSLSFDH 399
Query: 1018 RVVDGATVARAATLWKSLVENPALLLTQ 1045
R++DGAT +A K L+ +P LLL +
Sbjct: 400 RMIDGATAQKALNHIKRLLSDPELLLME 427
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 32/197 (16%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+FKL DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 248 YGEGDVALVGKPLLDIXXXXXXXXXXXXXSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
EG VA VG+ L+ +LD APG + K
Sbjct: 61 VPEGTVATVGQTLI---------------TLD---APGYENMT------------FKGQE 90
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
+ + V+ + D+ + +++A PSVR+ + +D + ++
Sbjct: 91 QEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQ 150
Query: 368 GTGKQGRVLKEDIITYM 384
GTGK GRVLKEDI ++
Sbjct: 151 GTGKNGRVLKEDIDAFL 167
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 96/239 (40%), Gaps = 45/239 (18%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+F L DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 508 YGEGDVALVGKPLLDIXX--------------XXXXXXXXXXXSLDRKAAPGVSEVNTPD 553
EG VA VG+ L+ + S + K +
Sbjct: 61 VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120
Query: 554 TSDQPNETLHKDPN--------KIDTKELRGTGKQGRVLKEDIITYM------------- 592
PN + P+ +D + ++GTGK GRVLKEDI ++
Sbjct: 121 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEE 180
Query: 593 ----NSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQL 647
+ T RE + I R K M S +T P + L +E D T+L
Sbjct: 181 KAAPAAAKPATTEGEFPETREKMSGIR-RAIAKAMVHS---KHTAPHVTLMDEADVTKL 235
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 108 bits (270), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/78 (62%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
+++QFKL+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 246 VYYGEGDVALVGKPLLDI 263
+YY D+A VGKPL+DI
Sbjct: 61 LYYNLDDIAYVGKPLVDI 78
Score = 106 bits (265), Expect = 6e-23, Method: Composition-based stats.
Identities = 48/78 (61%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
+++QF L+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 506 VYYGEGDVALVGKPLLDI 523
+YY D+A VGKPL+DI
Sbjct: 61 LYYNLDDIAYVGKPLVDI 78
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 4/206 (1%)
Query: 681 IPIRGYVKGMFKSMT-EANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
IPI G K + K M+ IP + EVD T L +N V ++++ LTY FF
Sbjct: 21 IPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFF 80
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
IKA++ + E P LN++ + I+ + + NISIAI L VP IK+ ++ + I
Sbjct: 81 IKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIA 138
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
RE+ + G + GK+ D++GGT ++++ G+ G II Q I+ I P
Sbjct: 139 REISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPV 198
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDG 885
+M I + ++N+ + DHR++DG
Sbjct: 199 IIDDM-IAVRDMVNLCLSIDHRILDG 223
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 21/166 (12%)
Query: 872 LNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLS 931
LN TWA D ++++ A + NISIAI L VP IK+ ++ S
Sbjct: 94 LNSTWAGD-KIIEHANI-------------------NISIAIAAGDLLYVPVIKNADEKS 133
Query: 932 LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKI 991
+ I RE+ + G + GK+ D++GGT ++++ G+ G II Q I+ I
Sbjct: 134 IKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESI 193
Query: 992 QLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVE 1037
P +M + + ++N+ + DHR++DG + K+ VE
Sbjct: 194 VKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
+P+ K + + + EA N+ L EV+ + D++ Q ++++ ++L +M F+
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+KA+ + +P +NASID ++++ + ++S+A+ T GLV P ++ V+ L + DI
Sbjct: 67 VKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
+++ + +GK+ D+ GG +++N G G + PII P Q I+ I+ P
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 860 -FDAEMRIVAKCILNVTWAADHRVVDG-ATVARAATLWKSLEN 900
+ ++ I+ L +++ DHR++DG +V T+ + LE+
Sbjct: 185 AVNGQVEILPMMYLALSY--DHRLIDGRESVGFLVTIKELLED 225
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
++S+A+ T GLV P ++ V+ L + DI +++ + +GK+ D+ GG +++N G
Sbjct: 96 DVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGG 155
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPR-FDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
G + PII P Q I+ I+ P + ++ ++ L +++ DHR++DG
Sbjct: 156 VFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSY--DHRLIDGRESV 213
Query: 1027 RAATLWKSLVENPALLL 1043
K L+E+P LL
Sbjct: 214 GFLVTIKELLEDPTRLL 230
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
+P + E D T+L + A+ EK +KLT +P +KA + + E P N+S+ P
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
+ + ++ +I A+DT GL+VP I++V++ LL + E + + K+ +
Sbjct: 97 SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
QG ++S++G++GGT PI+ +V I+ K + P +D + + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
HRV+DGA AR
Sbjct: 216 HRVIDGAAAAR 226
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+I A+DT GL+VP I++V++ SLL + E + + K+ +QG ++S++G
Sbjct: 108 HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
++GGT PI+ +V I+ K + P +D + + +L ++ + DHRV+DGA AR
Sbjct: 168 HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVIDGAAAAR 226
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 17/213 (7%)
Query: 680 VIPIRGYVKGMFKSMTEANTI-PSLRLTEEVDTTQLRDVKNQVSALYQEKFR-LKLTYMP 737
++ + G + +F MT+A I P + EEVD T + VS L K R K+T
Sbjct: 8 ILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSM------VSILDSAKARNRKVTVTG 61
Query: 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD 797
F + + + ++P LNA D T+ ++ +NI IA+DT GL V IK ++ +++
Sbjct: 62 FLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121
Query: 798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLL 857
I+ E+ + E K+ ++Q T +++NVG +GG + PII +V I+ +I
Sbjct: 122 ISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRI--- 178
Query: 858 PRFDAEMRIVAKCILNVTWAADHRVVDGATVAR 890
+ E + + ++ + DHR++DGA R
Sbjct: 179 --LERE----GRKYMYLSLSCDHRLIDGAVATR 205
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 907 HNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV 966
+NI IA+DT GL V IK ++ S+++I+ E+ + E K+ ++Q T +++NV
Sbjct: 94 YNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNV 153
Query: 967 GNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
G +GG + PII +V I+ +I + + + ++ + DHR++DGA
Sbjct: 154 GTIGGIMSTPIINYPEVAILGVHRI---------LEREGRKYMYLSLSCDHRLIDGAVAT 204
Query: 1027 RAATLWKSLVENPALLLTQ 1045
R K ++E+P ++ +
Sbjct: 205 RFIVDLKKVIEDPNAIIYE 223
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
+P + E D T+L + A+ EK +KLT +P +KA + + E P N+S+ P
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
+ + ++ +I A+DT GL+VP I++V++ LL + E + + K+ +
Sbjct: 97 SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
QG +++++G++GGT PI+ +V I+ K + P +D + + +L ++ + D
Sbjct: 157 QGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
HRV++GA AR
Sbjct: 216 HRVINGAAAAR 226
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+I A+DT GL+VP I++V++ SLL + E + + K+ +QG +++++G
Sbjct: 108 HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLG 167
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
++GGT PI+ +V I+ K + P +D + + +L ++ + DHRV++GA AR
Sbjct: 168 HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAAR 226
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
+P + E D T+L + A+ +K +KLT +P +KA + + E P N+S+ P
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAV-AKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
+ + ++ +I A+DT GL+VP I++V++ LL + E + + K+ +
Sbjct: 97 SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
QG ++S++G++GGT PI+ +V I+ K + P +D + + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
HRV++GA AR
Sbjct: 216 HRVINGAAAAR 226
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+I A+DT GL+VP I++V++ SLL + E + + K+ +QG ++S++G
Sbjct: 108 HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
++GGT PI+ +V I+ K + P +D + + +L ++ + DHRV++GA AR
Sbjct: 168 HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDHRVINGAAAAR 226
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 2/191 (1%)
Query: 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759
+P + E D T+L + A+ EK +KLT +P +KA + + E P N+S+ P
Sbjct: 38 VPHVTQFESADITELEAFRVAQKAV-AEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAP 96
Query: 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
+ + ++ +I A+DT GL+VP I++V++ LL + E + + K+ +
Sbjct: 97 SGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAM 156
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAAD 879
QG ++S++G++GGT PI+ +V I+ K + P +D + + +L ++ + D
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYD 215
Query: 880 HRVVDGATVAR 890
RV++GA AR
Sbjct: 216 CRVINGAAAAR 226
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+I A+DT GL+VP I++V++ SLL + E + + K+ +QG ++S++G
Sbjct: 108 HIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLG 167
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
++GGT PI+ +V I+ K + P +D + + +L ++ + D RV++GA AR
Sbjct: 168 HIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDCRVINGAAAAR 226
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 111/211 (52%), Gaps = 12/211 (5%)
Query: 694 MTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPIL 753
M TIP L+ +V+ ++ V+ +++ + + R K++ F IKA +L + P
Sbjct: 29 MQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEA 86
Query: 754 NASIDPTQENILVNPDH--NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE 811
N+S T ++ +H ++S+A+ T GL+ P + + + + I +++ + + E
Sbjct: 87 NSSWMDT----VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKARE 142
Query: 812 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQ--LLPRFDAEMRIVAK 869
GK+ P + QGGT ++SN+G G II P Q CI+A G + L+P D E
Sbjct: 143 GKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA-DNEKGFDVA 201
Query: 870 CILNVTWAADHRVVDGATVAR-AATLWKSLE 899
+++VT + DHRVVDGA A+ A K LE
Sbjct: 202 SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLE 232
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
++S+A+ T GL+ P + + + + I +++ + + EGK+ P + QGGT ++SN+G
Sbjct: 102 DVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLG 161
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQ--LLPRFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
G II P Q CI+A G + L+P D E +++VT + DHRVVDGA
Sbjct: 162 MFGIKNFSAIINPPQACILAIGASEDKLVPA-DNEKGFDVASMMSVTLSCDHRVVDGAVG 220
Query: 1026 ARAATLWKSLVENPALLL 1043
A+ ++ +E P +L
Sbjct: 221 AQWLAEFRKYLEKPITML 238
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
+FKL DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 EFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 60
Query: 249 GEGDVALVGKPLLDI 263
EG VA VG+ L+ +
Sbjct: 61 PEGTVATVGQTLITL 75
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 508
+F L DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 EFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 60
Query: 509 GEGDVALVGKPLLDI 523
EG VA VG+ L+ +
Sbjct: 61 PEGTVATVGQTLITL 75
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 102/215 (47%), Gaps = 9/215 (4%)
Query: 679 NVIPIRGYVKGMFKSMTEANT-IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMP 737
+V P+ G M + MT ++ IP+ + + EV +L ++++ + E LT
Sbjct: 15 DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALT--- 71
Query: 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAID--TKHGLVVPNIKSVNKLCL 795
++ L + + + ILN++ + E V+ + + T+ GL+VP +
Sbjct: 72 --LRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNT 129
Query: 796 LDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQ 855
++ + + + EG + P +++G T ++SN G +G P+I + I+ G I+
Sbjct: 130 RELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIK 189
Query: 856 LLPRFDAEMRIVAKCILNVTWAADHRVVDGATVAR 890
P +VA+ + +T DHRVVDGA VA+
Sbjct: 190 PRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQ 223
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
++ T+ GL+VP + + ++ + + + EG + P +++G T ++SN G
Sbjct: 105 HLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFG 164
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
+G P+I + I+ G I+ P VVA+ + +T DHRVVDGA VA+
Sbjct: 165 ALGVDDGVPVINHPEAAILGLGAIKPRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQ 223
Query: 1028 AATLWKSLVENP 1039
+ L+E+P
Sbjct: 224 FMCELRDLIESP 235
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ +FKL DIGEG+ E I W+ V EG + + + EV +DK +V I S +G + K+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 247 YYGEGDVALVGKPLLDI 263
Y EG V VG LL I
Sbjct: 59 LYREGQVVPVGSTLLQI 75
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ +F L DIGEG+ E I W+ V EG + + + EV +DK +V I S +G + K+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 507 YYGEGDVALVGKPLLDI 523
Y EG V VG LL I
Sbjct: 59 LYREGQVVPVGSTLLQI 75
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 766 VNPDH-NISIAIDTK-----HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDI 819
+ P H N+ +AID + LVV IK + I + +GK+ D
Sbjct: 75 ITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDF 134
Query: 820 QGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD--AEMRIVAKCI---LNV 874
G TIS++N G +G P ++ GQ I+ G ++ F +E RI I + +
Sbjct: 135 SGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITL 194
Query: 875 TWAADHRVVDGATVARAATLWKSLENILVNPD 906
T DHR++ G A + +++ +L++ D
Sbjct: 195 TSTYDHRIIQG---AESGDFLRTIHQLLLDDD 223
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 903 VNPDH-NISIAIDTK-----HGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDI 956
+ P H N+ +AID + LVV IK + I + +GK+ D
Sbjct: 75 ITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDF 134
Query: 957 QGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD--AEMRVVAKCI---LNV 1011
G TIS++N G +G P ++ Q I+ G ++ F +E R+ I + +
Sbjct: 135 SGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITL 194
Query: 1012 TWAADHRVVDGA 1023
T DHR++ GA
Sbjct: 195 TSTYDHRIIQGA 206
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
K LATP+VRR+ I E+ G+GK GR+LKEDI+ Y+
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYL 54
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYM 592
N I E+ G+GK GR+LKEDI+ Y+
Sbjct: 29 NNIKLSEVVGSGKDGRILKEDILNYL 54
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
K LATP+VRR+ I E+ G+GK GR+LKEDI+ Y+
Sbjct: 7 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYL 46
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDE 598
N I E+ G+GK GR+LKEDI+ Y+ + E
Sbjct: 21 NNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 45
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 22 VDIRLVQGTGKNGRVLKEDIDAFL 45
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 12 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 51
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 28 VDIRLVQGTGKNGRVLKEDIDAFL 51
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 5 RVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDIDAFL 44
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 21 VDIRLVQGTGKNGRVLKEDIDAFL 44
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 29/40 (72%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 5 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAWL 44
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 21 VDIRLVQGTGKNGRVLKEDIDAWL 44
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
K LATP+VR + I E+ G+GK GR+LKEDI+ Y+
Sbjct: 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYL 46
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDE 598
N I E+ G+GK GR+LKEDI+ Y+ + E
Sbjct: 21 NNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 346 ILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 39
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 16 VDIRLVQGTGKNGRVLKEDIDAFL 39
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 2 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 39
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 16 VDIRLVQGTGKNGRVLKEDIDAFL 39
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 1 IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 38
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D + ++GTGK GRVLKEDI ++
Sbjct: 15 VDIRLVQGTGKNGRVLKEDIDAFL 38
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
A PS+RR+ + +D LRGTG GR+ +ED+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDV 34
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 4 IKILMPSLSPTMEEGNIVKWLKK--EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
Query: 248 YGEG 251
EG
Sbjct: 62 VEEG 65
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 4 IKILMPSLSPTMEEGNIVKWLKK--EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
Query: 508 YGEG 511
EG
Sbjct: 62 VEEG 65
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
LA P+ R+++ + E++GTG GR+LKED++ ++
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 36.6 bits (83), Expect = 0.077, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 8 IKILMPSLSPTMEEGNIVKWLKK--EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65
Query: 248 YGEG 251
EG
Sbjct: 66 VEEG 69
Score = 36.2 bits (82), Expect = 0.10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 8 IKILMPSLSPTMEEGNIVKWLKK--EGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65
Query: 508 YGEG 511
EG
Sbjct: 66 VEEG 69
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 213 EGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVAL-------VGKP 259
EG +INE D++ EVE+DKA+V S + + K+ EG DV + VGKP
Sbjct: 31 EGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 473 EGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVAL-------VGKP 519
EG +INE D++ EVE+DKA+V S + + K+ EG DV + VGKP
Sbjct: 31 EGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
+P++RR++ + +D ++GTG GR+ +ED+
Sbjct: 9 SPAIRRLLAEWNLDASAIKGTGVGGRLTREDV 40
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+P++RR++ + +D ++GTG GR+ +ED+ ++
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKWL 44
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
+P++RR++ + +D ++GTG GR+ +ED+
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 44
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
+P++RR++ + +D ++GTG GR+ +ED+
Sbjct: 3 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 34
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
+P++RR++ + +D ++GTG GR+ +ED+
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 40
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 204 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
++ W V G +++E D++ E+E+DKA++ + +G + K+ EG DV L G PL
Sbjct: 44 VQRWEKKV--GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPL-GTPL 99
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 464 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
++ W V G +++E D++ E+E+DKA++ + +G + K+ EG DV L G PL
Sbjct: 44 VQRWEKKV--GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPL-GTPL 99
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 204 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
++ W V G +++E D++ E+E+DKA++ + +G + K+ EG DV L G PL
Sbjct: 26 VQRWEKKV--GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPL-GTPL 81
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 464 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
++ W V G +++E D++ E+E+DKA++ + +G + K+ EG DV L G PL
Sbjct: 26 VQRWEKKV--GEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPL-GTPL 81
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 33.5 bits (75), Expect = 0.71, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITY 383
++ A P+ RR+ K ID +++GTG G + ED+ Y
Sbjct: 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY 42
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
++ A P+ RR+ K ID +++GTG G + ED+
Sbjct: 4 EVAAMPAARRLAKELGIDASKVKGTGPGGVITVEDV 39
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 346 ILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITY 383
+LA P+ R++ + I +E+ G+G GRV ED+ Y
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAY 38
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 716 DVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIA 775
D+K + L +++F L+ + PF ++ + +L D L++ + + I
Sbjct: 161 DLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIR 220
Query: 776 IDTKHGLVVPNIKSVNKLC 794
ID HG+V P +K + LC
Sbjct: 221 IDAMHGVVGPYVKKI--LC 237
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 716 DVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIA 775
D+K + L +++F L+ + PF ++ + +L D L++ + + I
Sbjct: 161 DLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIR 220
Query: 776 IDTKHGLVVPNIKSVNKLC 794
ID HG+V P +K + LC
Sbjct: 221 IDAMHGVVGPYVKKI--LC 237
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I K E I + + W+ E + +E ++ ++E+DK + + + G + ++
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDE--LIVDIETDKVVMEVLAEADGVIAEIV 59
Query: 248 YGEGDVALVGKPL 260
EGD L G+ L
Sbjct: 60 KNEGDTVLSGELL 72
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 457 EGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALV 516
E I + + W+ E + +E ++ ++E+DK + + + G + ++ EGD L
Sbjct: 11 ESIADGTVATWHKKPGEAVKRDE--LIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLS 68
Query: 517 GKPL 520
G+ L
Sbjct: 69 GELL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,300,826
Number of Sequences: 62578
Number of extensions: 1262412
Number of successful extensions: 2815
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2686
Number of HSP's gapped (non-prelim): 99
length of query: 1045
length of database: 14,973,337
effective HSP length: 109
effective length of query: 936
effective length of database: 8,152,335
effective search space: 7630585560
effective search space used: 7630585560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)