Query psy6394
Match_columns 1045
No_of_seqs 648 out of 4822
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:45:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.3E-94 2.9E-99 867.8 51.6 539 188-908 3-585 (590)
2 TIGR01348 PDHac_trf_long pyruv 100.0 1.6E-89 3.5E-94 818.3 49.0 518 189-909 2-545 (546)
3 PRK11854 aceF pyruvate dehydro 100.0 5.8E-86 1.3E-90 801.6 51.9 594 188-908 3-631 (633)
4 PRK11855 dihydrolipoamide acet 100.0 1.4E-82 3E-87 762.8 49.4 523 188-909 3-546 (547)
5 PRK05704 dihydrolipoamide succ 100.0 3.6E-80 7.8E-85 712.5 37.3 396 447-909 2-404 (407)
6 TIGR01347 sucB 2-oxoglutarate 100.0 9.6E-80 2.1E-84 707.4 37.3 392 449-909 2-400 (403)
7 PLN02744 dihydrolipoyllysine-r 100.0 2.6E-79 5.6E-84 717.2 35.0 408 431-909 96-538 (539)
8 PLN02528 2-oxoisovalerate dehy 100.0 7.9E-78 1.7E-82 695.7 35.8 404 450-909 1-412 (416)
9 KOG0558|consensus 100.0 3.8E-78 8.3E-83 640.9 22.3 407 444-909 61-470 (474)
10 COG0508 AceF Pyruvate/2-oxoglu 100.0 1.5E-76 3.3E-81 681.9 32.6 395 446-909 1-402 (404)
11 TIGR01349 PDHac_trf_mito pyruv 100.0 2.7E-76 5.9E-81 686.4 34.5 394 450-909 2-434 (435)
12 KOG0557|consensus 100.0 7.4E-77 1.6E-81 661.6 27.0 402 444-1044 35-470 (470)
13 PLN02226 2-oxoglutarate dehydr 100.0 1.8E-74 4E-79 663.3 39.1 370 448-1045 92-462 (463)
14 PTZ00144 dihydrolipoamide succ 100.0 3.1E-74 6.8E-79 658.3 39.2 405 407-1045 12-417 (418)
15 PRK14843 dihydrolipoamide acet 100.0 2.4E-69 5.1E-74 609.6 28.0 295 556-909 51-346 (347)
16 PRK11856 branched-chain alpha- 100.0 8.1E-67 1.8E-71 608.5 35.8 389 447-909 2-409 (411)
17 KOG0559|consensus 100.0 1.9E-67 4.2E-72 562.6 22.7 381 447-909 72-454 (457)
18 PRK11857 dihydrolipoamide acet 100.0 2.8E-64 6.2E-69 559.3 25.0 301 554-908 2-303 (306)
19 KOG0557|consensus 100.0 2.7E-59 5.8E-64 521.2 20.9 422 179-909 30-469 (470)
20 PLN02226 2-oxoglutarate dehydr 100.0 1E-54 2.2E-59 500.2 28.5 138 768-909 323-460 (463)
21 PTZ00144 dihydrolipoamide succ 100.0 5.3E-54 1.1E-58 491.9 27.5 138 768-909 278-415 (418)
22 PF00198 2-oxoacid_dh: 2-oxoac 100.0 7.6E-54 1.7E-58 460.6 20.3 227 677-909 3-230 (231)
23 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.1E-51 2.4E-56 496.6 30.5 197 789-1042 384-585 (590)
24 TIGR01348 PDHac_trf_long pyruv 100.0 8E-50 1.7E-54 477.2 31.6 198 788-1044 348-546 (546)
25 PRK14843 dihydrolipoamide acet 100.0 4.3E-50 9.4E-55 453.1 19.4 198 789-1044 149-347 (347)
26 PRK11854 aceF pyruvate dehydro 100.0 3.9E-47 8.5E-52 462.2 35.2 143 901-1044 491-633 (633)
27 PRK12270 kgd alpha-ketoglutara 100.0 2.4E-45 5.1E-50 435.1 21.6 224 677-903 114-349 (1228)
28 PRK11855 dihydrolipoamide acet 100.0 2.1E-43 4.5E-48 424.3 31.1 143 901-1044 405-547 (547)
29 PRK11857 dihydrolipoamide acet 100.0 1.7E-42 3.7E-47 385.3 16.1 198 789-1044 107-305 (306)
30 PF00198 2-oxoacid_dh: 2-oxoac 100.0 2.3E-42 5E-47 371.7 15.4 143 901-1044 89-231 (231)
31 PRK05704 dihydrolipoamide succ 100.0 1.1E-41 2.3E-46 393.3 14.2 197 789-1045 209-406 (407)
32 TIGR01347 sucB 2-oxoglutarate 100.0 1.4E-41 3E-46 391.5 14.5 197 789-1045 205-402 (403)
33 PLN02528 2-oxoisovalerate dehy 100.0 2.8E-41 6E-46 391.3 14.0 145 901-1045 270-414 (416)
34 PLN02744 dihydrolipoyllysine-r 100.0 3E-41 6.6E-46 396.4 14.5 197 789-1044 340-539 (539)
35 KOG0559|consensus 100.0 3.1E-40 6.7E-45 354.0 14.3 198 789-1045 259-456 (457)
36 TIGR01349 PDHac_trf_mito pyruv 100.0 2.1E-40 4.6E-45 386.0 13.9 144 901-1044 290-435 (435)
37 COG0508 AceF Pyruvate/2-oxoglu 100.0 4.5E-38 9.7E-43 363.0 17.5 144 901-1045 261-404 (404)
38 KOG0558|consensus 100.0 3E-37 6.6E-42 329.1 8.7 185 187-423 64-263 (474)
39 PRK12270 kgd alpha-ketoglutara 100.0 3.5E-36 7.5E-41 357.5 12.2 196 787-1037 143-349 (1228)
40 PRK11856 branched-chain alpha- 100.0 2.3E-31 5E-36 310.8 15.4 143 901-1044 268-410 (411)
41 PF00364 Biotin_lipoyl: Biotin 99.6 5.2E-16 1.1E-20 138.2 9.3 74 188-263 1-74 (74)
42 PRK14875 acetoin dehydrogenase 99.6 5.5E-16 1.2E-20 178.2 11.9 76 187-264 2-77 (371)
43 PF00364 Biotin_lipoyl: Biotin 99.6 3.5E-15 7.6E-20 132.8 9.6 74 448-523 1-74 (74)
44 PRK14875 acetoin dehydrogenase 99.6 3.5E-15 7.7E-20 171.5 12.1 120 447-588 2-121 (371)
45 PRK06748 hypothetical protein; 99.5 3.6E-14 7.7E-19 127.7 9.9 62 201-264 12-74 (83)
46 PRK11892 pyruvate dehydrogenas 99.5 1.5E-13 3.3E-18 161.8 14.0 80 188-269 3-83 (464)
47 PRK06748 hypothetical protein; 99.5 2.2E-13 4.8E-18 122.6 9.4 63 461-525 12-75 (83)
48 PRK05889 putative acetyl-CoA c 99.4 2.8E-12 6E-17 113.3 9.3 62 201-264 10-71 (71)
49 cd06663 Biotinyl_lipoyl_domain 99.3 9.8E-12 2.1E-16 110.2 9.9 72 190-263 2-73 (73)
50 PRK11892 pyruvate dehydrogenas 99.3 7.5E-12 1.6E-16 147.6 11.9 80 448-529 3-83 (464)
51 PRK08225 acetyl-CoA carboxylas 99.3 1.7E-11 3.8E-16 107.9 9.3 61 202-264 10-70 (70)
52 PRK05889 putative acetyl-CoA c 99.3 1.8E-11 3.9E-16 108.2 9.0 62 461-524 10-71 (71)
53 COG0511 AccB Biotin carboxyl c 99.2 1.5E-11 3.3E-16 122.9 8.0 61 202-264 79-139 (140)
54 cd06663 Biotinyl_lipoyl_domain 99.2 4.4E-11 9.4E-16 106.1 9.2 72 450-523 2-73 (73)
55 PF02817 E3_binding: e3 bindin 99.2 1E-11 2.3E-16 95.8 3.9 38 345-382 2-39 (39)
56 PRK08225 acetyl-CoA carboxylas 99.1 1.8E-10 3.9E-15 101.5 8.5 62 461-524 9-70 (70)
57 PRK06549 acetyl-CoA carboxylas 99.1 2.5E-10 5.3E-15 111.9 9.5 61 201-263 69-129 (130)
58 COG0511 AccB Biotin carboxyl c 99.1 1.4E-10 3.1E-15 115.9 7.5 62 461-524 78-139 (140)
59 PRK07051 hypothetical protein; 99.1 8.4E-10 1.8E-14 99.9 9.9 70 187-264 3-79 (80)
60 PRK05641 putative acetyl-CoA c 99.0 6.3E-10 1.4E-14 112.3 9.1 61 201-263 92-152 (153)
61 PRK06549 acetyl-CoA carboxylas 99.0 1.1E-09 2.4E-14 107.3 8.9 61 461-523 69-129 (130)
62 PLN02983 biotin carboxyl carri 99.0 8.9E-10 1.9E-14 117.9 8.6 57 206-264 217-273 (274)
63 PRK07051 hypothetical protein; 99.0 2.7E-09 5.8E-14 96.6 9.6 70 447-524 3-79 (80)
64 TIGR00531 BCCP acetyl-CoA carb 99.0 1.4E-09 3E-14 110.7 8.4 61 202-264 89-156 (156)
65 cd06850 biotinyl_domain The bi 99.0 2.7E-09 6E-14 92.2 9.1 62 200-263 6-67 (67)
66 PRK05641 putative acetyl-CoA c 98.9 3.3E-09 7.1E-14 107.2 8.6 61 461-523 92-152 (153)
67 PRK06302 acetyl-CoA carboxylas 98.9 3.5E-09 7.5E-14 107.7 8.6 57 206-264 99-155 (155)
68 PRK14042 pyruvate carboxylase 98.9 4.5E-09 9.8E-14 127.0 9.6 67 195-264 528-594 (596)
69 PLN02983 biotin carboxyl carri 98.9 5.4E-09 1.2E-13 112.0 8.3 68 447-524 206-273 (274)
70 PF02817 E3_binding: e3 bindin 98.9 4.7E-10 1E-14 86.7 0.2 38 553-590 2-39 (39)
71 cd06850 biotinyl_domain The bi 98.9 1.1E-08 2.3E-13 88.4 8.8 62 460-523 6-67 (67)
72 cd06849 lipoyl_domain Lipoyl d 98.8 2.3E-08 5E-13 86.5 10.5 73 189-263 2-74 (74)
73 TIGR00531 BCCP acetyl-CoA carb 98.8 1.1E-08 2.4E-13 104.2 8.0 57 466-524 100-156 (156)
74 cd06849 lipoyl_domain Lipoyl d 98.7 6.2E-08 1.3E-12 83.8 10.1 73 449-523 2-74 (74)
75 PRK06302 acetyl-CoA carboxylas 98.7 2.2E-08 4.7E-13 102.0 8.2 57 466-524 99-155 (155)
76 TIGR02712 urea_carbox urea car 98.7 2.3E-08 4.9E-13 130.6 9.4 62 201-264 1140-1201(1201)
77 PRK14042 pyruvate carboxylase 98.7 2.9E-08 6.2E-13 120.2 9.3 63 461-525 533-595 (596)
78 PF00302 CAT: Chloramphenicol 98.7 2.4E-07 5.2E-12 98.6 15.2 177 698-895 23-205 (206)
79 TIGR01108 oadA oxaloacetate de 98.6 4.2E-08 9E-13 119.2 8.1 63 195-260 520-582 (582)
80 TIGR01235 pyruv_carbox pyruvat 98.6 5.4E-08 1.2E-12 125.9 9.2 67 195-264 1077-1143(1143)
81 PRK14040 oxaloacetate decarbox 98.6 7.7E-08 1.7E-12 117.0 9.5 61 201-263 532-592 (593)
82 PRK13757 chloramphenicol acety 98.6 1.1E-06 2.4E-11 94.2 16.1 177 700-898 30-211 (219)
83 TIGR02712 urea_carbox urea car 98.6 1.1E-07 2.3E-12 124.4 9.0 62 461-524 1140-1201(1201)
84 TIGR01108 oadA oxaloacetate de 98.5 1.8E-07 3.9E-12 113.7 8.0 58 461-520 525-582 (582)
85 PRK14040 oxaloacetate decarbox 98.5 2.9E-07 6.3E-12 112.0 9.1 61 461-523 532-592 (593)
86 PRK09282 pyruvate carboxylase 98.5 3.3E-07 7.1E-12 111.8 9.2 62 201-264 530-591 (592)
87 TIGR01235 pyruv_carbox pyruvat 98.4 3.6E-07 7.8E-12 118.5 8.7 62 461-524 1082-1143(1143)
88 PRK12999 pyruvate carboxylase; 98.4 5.5E-07 1.2E-11 117.3 9.2 67 195-264 1079-1145(1146)
89 COG4770 Acetyl/propionyl-CoA c 98.3 7.5E-07 1.6E-11 103.7 7.2 62 201-264 583-644 (645)
90 COG1038 PycA Pyruvate carboxyl 98.3 7.7E-07 1.7E-11 106.3 6.6 67 195-264 1082-1148(1149)
91 PRK09282 pyruvate carboxylase 98.3 1.3E-06 2.9E-11 106.6 8.7 62 461-524 530-591 (592)
92 PRK12999 pyruvate carboxylase; 98.2 3E-06 6.5E-11 110.5 8.8 62 461-524 1084-1145(1146)
93 COG4770 Acetyl/propionyl-CoA c 98.1 3.6E-06 7.8E-11 98.2 6.8 62 461-524 583-644 (645)
94 KOG0369|consensus 98.0 7.9E-06 1.7E-10 95.8 6.7 68 194-264 1108-1175(1176)
95 COG1038 PycA Pyruvate carboxyl 97.9 1.1E-05 2.4E-10 96.7 5.8 61 462-524 1088-1148(1149)
96 cd06848 GCS_H Glycine cleavage 97.9 2.1E-05 4.6E-10 73.8 5.8 61 189-252 17-78 (96)
97 cd06848 GCS_H Glycine cleavage 97.7 5E-05 1.1E-09 71.2 5.9 63 448-513 16-79 (96)
98 COG4845 Chloramphenicol O-acet 97.6 0.0012 2.7E-08 68.5 14.7 183 696-907 24-216 (219)
99 TIGR03077 not_gcvH glycine cle 97.6 9.4E-05 2E-09 71.0 5.4 56 211-266 38-100 (110)
100 KOG0369|consensus 97.5 0.00012 2.5E-09 86.4 5.9 62 461-524 1114-1175(1176)
101 PRK01202 glycine cleavage syst 97.5 0.00026 5.7E-09 69.9 7.1 56 211-266 45-107 (127)
102 KOG0238|consensus 97.5 8.7E-05 1.9E-09 85.6 4.2 61 202-264 610-670 (670)
103 PRK00624 glycine cleavage syst 97.4 0.00024 5.2E-09 68.6 6.2 55 211-265 40-101 (114)
104 TIGR03077 not_gcvH glycine cle 97.3 0.00033 7.2E-09 67.2 5.1 40 472-511 39-78 (110)
105 PRK13380 glycine cleavage syst 97.2 0.00041 8.9E-09 69.8 5.1 77 188-266 31-114 (144)
106 KOG0368|consensus 97.2 0.0005 1.1E-08 87.1 6.2 65 200-267 692-756 (2196)
107 PRK00624 glycine cleavage syst 97.1 0.00062 1.3E-08 65.8 5.1 36 472-507 41-76 (114)
108 KOG0238|consensus 97.1 0.00039 8.6E-09 80.3 3.6 61 462-524 610-670 (670)
109 TIGR00998 8a0101 efflux pump m 97.0 0.0018 3.9E-08 74.2 8.3 34 233-266 205-238 (334)
110 PRK10559 p-hydroxybenzoic acid 97.0 0.0023 4.9E-08 72.9 8.6 69 195-266 50-188 (310)
111 PRK13380 glycine cleavage syst 96.9 0.0013 2.8E-08 66.3 5.6 48 462-511 44-92 (144)
112 KOG0368|consensus 96.9 0.0013 2.8E-08 83.6 5.8 66 460-528 692-757 (2196)
113 TIGR01730 RND_mfp RND family e 96.8 0.002 4.4E-08 73.0 7.0 64 200-265 33-167 (322)
114 PRK09783 copper/silver efflux 96.8 0.0046 1E-07 73.1 9.4 65 200-265 130-242 (409)
115 PF13533 Biotin_lipoyl_2: Biot 96.7 0.0022 4.8E-08 52.8 4.7 35 232-266 2-36 (50)
116 PRK10476 multidrug resistance 96.7 0.0036 7.8E-08 72.3 7.7 34 233-266 209-242 (346)
117 TIGR00527 gcvH glycine cleavag 96.7 0.0019 4.2E-08 63.7 4.6 56 211-266 44-106 (127)
118 PRK01202 glycine cleavage syst 96.6 0.0036 7.8E-08 61.8 6.3 56 471-526 45-107 (127)
119 TIGR00998 8a0101 efflux pump m 96.6 0.0048 1E-07 70.7 7.9 34 493-526 205-238 (334)
120 PRK10559 p-hydroxybenzoic acid 96.6 0.0061 1.3E-07 69.4 8.4 65 460-526 54-188 (310)
121 PRK15136 multidrug efflux syst 96.6 0.0052 1.1E-07 72.3 7.9 34 233-266 216-249 (390)
122 PRK09578 periplasmic multidrug 96.5 0.0054 1.2E-07 71.9 7.6 71 192-265 63-206 (385)
123 TIGR01730 RND_mfp RND family e 96.5 0.0043 9.4E-08 70.3 6.5 65 460-526 33-168 (322)
124 PF13533 Biotin_lipoyl_2: Biot 96.5 0.0047 1E-07 50.8 4.9 35 492-526 2-36 (50)
125 PRK03598 putative efflux pump 96.4 0.0062 1.3E-07 69.9 6.9 34 232-265 203-236 (331)
126 TIGR00527 gcvH glycine cleavag 96.3 0.0051 1.1E-07 60.8 4.8 38 471-508 44-81 (127)
127 PRK09783 copper/silver efflux 96.2 0.014 3.1E-07 69.0 9.2 66 461-527 131-244 (409)
128 PRK09859 multidrug efflux syst 96.2 0.012 2.5E-07 69.2 8.1 68 194-264 63-203 (385)
129 PF01597 GCV_H: Glycine cleava 96.2 0.0085 1.8E-07 58.9 5.8 63 202-265 31-100 (122)
130 PRK10476 multidrug resistance 96.2 0.01 2.2E-07 68.6 7.4 36 492-527 208-243 (346)
131 PRK15030 multidrug efflux syst 96.1 0.016 3.5E-07 68.3 8.4 69 193-264 66-207 (397)
132 PRK09578 periplasmic multidrug 95.9 0.016 3.4E-07 68.0 7.6 65 460-526 70-207 (385)
133 PRK15136 multidrug efflux syst 95.9 0.019 4.2E-07 67.4 8.2 35 493-527 216-250 (390)
134 PRK11578 macrolide transporter 95.9 0.018 3.9E-07 67.2 7.8 32 234-265 185-219 (370)
135 PRK12784 hypothetical protein; 95.9 0.038 8.2E-07 48.8 7.6 64 200-265 12-76 (84)
136 PRK03598 putative efflux pump 95.9 0.015 3.2E-07 66.7 6.9 35 492-526 203-237 (331)
137 PRK11556 multidrug efflux syst 95.8 0.016 3.4E-07 68.8 7.0 63 200-264 94-229 (415)
138 COG0509 GcvH Glycine cleavage 95.7 0.014 3.1E-07 57.2 4.9 77 189-267 27-110 (131)
139 PRK09859 multidrug efflux syst 95.7 0.026 5.6E-07 66.3 7.8 65 460-526 68-205 (385)
140 PF12700 HlyD_2: HlyD family s 95.5 0.013 2.8E-07 66.6 4.5 32 235-266 137-193 (328)
141 PRK12784 hypothetical protein; 95.5 0.063 1.4E-06 47.5 7.5 63 461-525 13-76 (84)
142 PF01597 GCV_H: Glycine cleava 95.4 0.025 5.5E-07 55.5 5.7 45 462-507 31-75 (122)
143 PRK15030 multidrug efflux syst 95.4 0.039 8.6E-07 65.0 8.3 63 461-525 73-208 (397)
144 PF00302 CAT: Chloramphenicol 95.3 0.21 4.6E-06 53.5 12.7 123 901-1033 78-206 (206)
145 PRK13757 chloramphenicol acety 95.3 0.21 4.6E-06 54.0 12.5 101 929-1038 110-214 (219)
146 TIGR02971 heterocyst_DevB ABC 95.3 0.039 8.6E-07 63.1 7.4 31 234-265 206-236 (327)
147 PRK11556 multidrug efflux syst 95.1 0.04 8.6E-07 65.4 7.1 63 460-524 94-229 (415)
148 PRK11578 macrolide transporter 95.1 0.05 1.1E-06 63.4 7.8 32 494-525 185-219 (370)
149 COG0509 GcvH Glycine cleavage 94.9 0.028 6E-07 55.3 4.0 37 471-507 47-83 (131)
150 TIGR03309 matur_yqeB selenium- 94.5 0.099 2.1E-06 57.2 7.5 58 464-528 174-231 (256)
151 PF01398 JAB: JAB1/Mov34/MPN/P 94.3 0.092 2E-06 50.6 6.2 95 3-113 12-112 (114)
152 cd08057 MPN_euk_non_mb Mpr1p, 94.1 0.28 6.1E-06 50.2 9.5 104 3-130 7-120 (157)
153 TIGR03309 matur_yqeB selenium- 94.0 0.16 3.4E-06 55.7 7.7 55 206-267 176-230 (256)
154 TIGR00999 8a0102 Membrane Fusi 93.2 0.19 4.1E-06 55.4 7.0 34 232-265 88-121 (265)
155 PF13375 RnfC_N: RnfC Barrel s 92.7 0.14 3.1E-06 48.5 4.4 42 205-249 42-83 (101)
156 cd08067 MPN_2A_DUB Mov34/MPN/P 92.5 0.73 1.6E-05 48.7 9.7 109 4-130 14-129 (187)
157 cd06250 M14_PaAOTO_like An unc 92.3 0.37 7.9E-06 56.2 7.9 59 201-263 296-358 (359)
158 cd06251 M14_ASTE_ASPA_like_1 A 92.2 0.45 9.7E-06 53.7 8.3 58 202-263 227-286 (287)
159 PF13375 RnfC_N: RnfC Barrel s 92.2 0.2 4.3E-06 47.6 4.5 43 462-507 39-81 (101)
160 cd06253 M14_ASTE_ASPA_like_3 A 91.8 0.51 1.1E-05 53.5 8.2 59 201-263 236-297 (298)
161 cd07767 MPN Mpr1p, Pad1p N-ter 91.0 1.4 3.1E-05 42.0 9.3 98 6-130 3-106 (116)
162 smart00232 JAB_MPN JAB/MPN dom 90.4 2.2 4.8E-05 41.8 10.3 89 3-111 8-105 (135)
163 PLN03246 26S proteasome regula 90.2 0.72 1.6E-05 52.4 7.3 87 3-112 14-113 (303)
164 TIGR02994 ectoine_eutE ectoine 89.6 0.91 2E-05 52.2 7.7 59 201-263 262-324 (325)
165 cd08062 MPN_RPN7_8 Mpr1p, Pad1 89.6 1.1 2.5E-05 50.3 8.2 98 3-128 9-119 (280)
166 COG3608 Predicted deacylase [G 89.5 0.64 1.4E-05 52.9 6.1 60 200-263 262-324 (331)
167 cd06253 M14_ASTE_ASPA_like_3 A 89.5 1 2.2E-05 51.1 7.9 57 463-523 238-297 (298)
168 PF13437 HlyD_3: HlyD family s 89.1 0.58 1.3E-05 44.1 4.8 33 234-266 1-33 (105)
169 cd06252 M14_ASTE_ASPA_like_2 A 88.8 1.4 3E-05 50.5 8.4 60 201-264 251-314 (316)
170 cd08058 MPN_euk_mb Mpr1p, Pad1 88.7 3 6.4E-05 40.6 9.5 102 3-130 2-108 (119)
171 cd06251 M14_ASTE_ASPA_like_1 A 88.7 1.2 2.5E-05 50.4 7.6 56 464-523 229-286 (287)
172 PF05896 NQRA: Na(+)-transloca 88.5 0.62 1.3E-05 51.3 5.0 40 206-250 42-83 (257)
173 PF00529 HlyD: HlyD family sec 87.5 0.51 1.1E-05 53.0 3.8 34 233-266 2-35 (305)
174 cd06250 M14_PaAOTO_like An unc 87.3 1.5 3.2E-05 51.2 7.6 58 462-523 297-358 (359)
175 PF13437 HlyD_3: HlyD family s 87.1 0.82 1.8E-05 43.1 4.4 33 494-526 1-33 (105)
176 COG3608 Predicted deacylase [G 86.7 1.5 3.2E-05 50.0 6.9 57 447-512 256-319 (331)
177 TIGR02994 ectoine_eutE ectoine 85.8 1.8 3.9E-05 49.8 7.2 56 464-523 265-324 (325)
178 PF00529 HlyD: HlyD family sec 85.5 0.74 1.6E-05 51.6 3.8 35 493-527 2-36 (305)
179 TIGR02971 heterocyst_DevB ABC 85.4 1.1 2.4E-05 51.2 5.2 42 225-266 6-50 (327)
180 cd08063 MPN_CSN6 Mpr1p, Pad1p 85.2 1.8 4E-05 48.9 6.7 63 45-112 43-110 (288)
181 cd06252 M14_ASTE_ASPA_like_2 A 85.1 2.5 5.4E-05 48.5 7.8 57 464-524 254-314 (316)
182 PF12700 HlyD_2: HlyD family s 85.1 0.92 2E-05 51.5 4.3 42 222-266 13-54 (328)
183 cd06254 M14_ASTE_ASPA_like_4 A 84.9 2 4.3E-05 48.5 6.9 56 201-260 230-287 (288)
184 PF09891 DUF2118: Uncharacteri 84.2 1.7 3.7E-05 44.1 5.2 47 200-248 87-134 (150)
185 PF09891 DUF2118: Uncharacteri 83.7 1.8 3.9E-05 43.9 5.1 45 461-507 88-133 (150)
186 cd08066 MPN_AMSH_like Mov34/MP 83.2 9.9 0.00021 39.8 10.6 56 69-129 62-117 (173)
187 KOG3373|consensus 82.6 0.91 2E-05 46.0 2.5 42 211-252 88-129 (172)
188 COG1726 NqrA Na+-transporting 82.2 1.6 3.5E-05 49.5 4.5 38 211-251 45-84 (447)
189 TIGR01843 type_I_hlyD type I s 81.2 2.2 4.7E-05 50.4 5.5 43 224-266 35-77 (423)
190 TIGR01936 nqrA NADH:ubiquinone 80.6 2.1 4.5E-05 51.3 5.0 44 202-248 38-81 (447)
191 TIGR03794 NHPM_micro_HlyD NHPM 80.4 2.6 5.6E-05 50.2 5.8 35 232-266 58-92 (421)
192 TIGR01000 bacteriocin_acc bact 80.2 2.6 5.7E-05 50.7 5.9 38 229-266 56-93 (457)
193 PF05896 NQRA: Na(+)-transloca 80.0 3 6.6E-05 46.0 5.6 43 464-513 40-84 (257)
194 cd08064 MPN_eIF3f Mpr1p, Pad1p 79.9 5.3 0.00011 44.6 7.7 87 3-113 7-103 (265)
195 cd08069 MPN_RPN11_CSN5 Mov34/M 79.3 13 0.00027 41.8 10.4 89 3-111 18-116 (268)
196 TIGR03794 NHPM_micro_HlyD NHPM 79.1 2.7 5.8E-05 50.0 5.4 38 489-526 55-92 (421)
197 PRK05352 Na(+)-translocating N 78.8 2.5 5.4E-05 50.7 4.9 41 205-248 42-82 (448)
198 cd06255 M14_ASTE_ASPA_like_5 A 78.7 5.7 0.00012 45.0 7.6 44 201-246 238-283 (293)
199 TIGR01843 type_I_hlyD type I s 78.5 2.7 5.8E-05 49.5 5.2 44 484-527 35-78 (423)
200 COG4845 Chloramphenicol O-acet 78.1 32 0.0007 36.7 12.0 130 902-1042 81-217 (219)
201 TIGR01000 bacteriocin_acc bact 78.0 3.1 6.7E-05 50.1 5.5 41 486-526 53-93 (457)
202 cd06254 M14_ASTE_ASPA_like_4 A 77.7 4.8 0.0001 45.5 6.6 53 464-520 233-287 (288)
203 PF07831 PYNP_C: Pyrimidine nu 77.2 2.4 5.1E-05 38.1 3.1 23 205-229 34-56 (75)
204 PF07247 AATase: Alcohol acety 76.9 36 0.00078 41.1 14.3 39 704-749 251-289 (480)
205 TIGR01936 nqrA NADH:ubiquinone 76.0 2.9 6.2E-05 50.1 4.4 43 462-507 38-80 (447)
206 PRK05305 phosphatidylserine de 75.5 5.6 0.00012 42.7 6.1 53 201-260 149-201 (206)
207 TIGR00164 PS_decarb_rel phosph 75.4 5.8 0.00013 42.0 6.1 54 201-261 129-182 (189)
208 PRK05352 Na(+)-translocating N 75.2 3.4 7.3E-05 49.6 4.7 44 462-508 39-82 (448)
209 TIGR01945 rnfC electron transp 75.0 2.9 6.2E-05 50.1 4.1 39 206-247 44-82 (435)
210 PRK05035 electron transport co 73.9 8.9 0.00019 48.6 8.1 39 206-247 50-88 (695)
211 KOG3373|consensus 73.1 2.3 5E-05 43.2 2.2 38 472-509 89-126 (172)
212 COG1726 NqrA Na+-transporting 72.2 5.6 0.00012 45.4 5.1 50 471-523 45-94 (447)
213 COG0845 AcrA Membrane-fusion p 72.2 6.8 0.00015 44.3 6.2 52 213-265 48-99 (372)
214 TIGR01945 rnfC electron transp 71.3 4.1 8.9E-05 48.8 4.2 42 463-507 41-82 (435)
215 TIGR00999 8a0102 Membrane Fusi 71.1 5.6 0.00012 43.8 5.0 34 493-526 89-122 (265)
216 PRK09439 PTS system glucose-sp 71.0 8.4 0.00018 40.1 5.8 43 480-525 48-125 (169)
217 PF07831 PYNP_C: Pyrimidine nu 70.2 4.2 9E-05 36.6 3.0 27 462-490 31-57 (75)
218 cd00210 PTS_IIA_glc PTS_IIA, P 69.9 10 0.00022 37.5 5.8 23 503-525 81-103 (124)
219 PF00358 PTS_EIIA_1: phosphoen 67.7 9.5 0.00021 38.1 5.2 44 479-525 29-107 (132)
220 TIGR00830 PTBA PTS system, glu 67.4 12 0.00026 36.9 5.7 22 504-525 82-103 (121)
221 PF04952 AstE_AspA: Succinylgl 67.1 15 0.00033 41.3 7.4 60 201-264 227-290 (292)
222 cd06255 M14_ASTE_ASPA_like_5 A 65.2 17 0.00036 41.3 7.3 42 463-506 240-283 (293)
223 COG4656 RnfC Predicted NADH:ub 63.0 6.5 0.00014 47.2 3.5 39 465-507 45-83 (529)
224 PF02749 QRPTase_N: Quinolinat 62.9 7 0.00015 36.0 3.0 23 205-229 47-69 (88)
225 COG4656 RnfC Predicted NADH:ub 62.4 6.3 0.00014 47.4 3.2 38 206-247 46-83 (529)
226 COG1566 EmrA Multidrug resista 61.2 9.3 0.0002 44.4 4.3 35 232-266 53-87 (352)
227 COG0845 AcrA Membrane-fusion p 59.9 18 0.00039 40.9 6.4 45 480-525 55-99 (372)
228 COG1566 EmrA Multidrug resista 59.7 10 0.00022 44.1 4.2 34 233-266 209-242 (352)
229 COG2190 NagE Phosphotransferas 59.0 16 0.00035 37.4 5.1 22 504-525 89-110 (156)
230 COG4072 Uncharacterized protei 58.8 17 0.00037 36.0 4.9 53 447-507 91-144 (161)
231 COG4072 Uncharacterized protei 58.5 19 0.00041 35.7 5.2 45 200-246 98-143 (161)
232 cd08068 MPN_BRCC36 Mov34/MPN/P 58.3 53 0.0011 36.4 9.2 124 3-146 10-151 (244)
233 PRK05035 electron transport co 58.2 11 0.00024 47.8 4.5 43 462-507 46-88 (695)
234 PF02749 QRPTase_N: Quinolinat 53.2 12 0.00026 34.5 2.9 23 464-488 46-68 (88)
235 PF02666 PS_Dcarbxylase: Phosp 51.1 22 0.00047 38.0 4.9 68 190-262 134-202 (202)
236 cd08065 MPN_eIF3h Mpr1p, Pad1p 49.7 26 0.00057 39.1 5.4 71 3-92 9-89 (266)
237 PF04952 AstE_AspA: Succinylgl 49.6 36 0.00077 38.2 6.6 58 463-524 229-290 (292)
238 cd08070 MPN_like Mpr1p, Pad1p 49.3 35 0.00075 33.6 5.6 83 4-106 4-94 (128)
239 TIGR00164 PS_decarb_rel phosph 48.9 35 0.00076 36.2 5.9 53 462-521 130-182 (189)
240 PRK05305 phosphatidylserine de 48.2 35 0.00075 36.7 5.8 52 462-520 150-201 (206)
241 PF00358 PTS_EIIA_1: phosphoen 46.7 14 0.00031 36.9 2.4 26 202-229 83-108 (132)
242 cd00210 PTS_IIA_glc PTS_IIA, P 45.0 17 0.00038 35.9 2.7 25 202-228 79-103 (124)
243 PRK03934 phosphatidylserine de 44.8 33 0.00071 38.4 5.1 56 202-263 210-265 (265)
244 TIGR00830 PTBA PTS system, glu 44.4 17 0.00038 35.7 2.6 25 202-228 79-103 (121)
245 PRK09439 PTS system glucose-sp 41.2 22 0.00047 37.1 2.8 25 202-228 101-125 (169)
246 PRK09824 PTS system beta-gluco 40.8 45 0.00098 41.9 6.0 59 461-525 486-583 (627)
247 PF02666 PS_Dcarbxylase: Phosp 40.4 44 0.00096 35.7 5.2 58 461-522 144-202 (202)
248 PRK10255 PTS system N-acetyl g 38.4 57 0.0012 41.1 6.3 59 461-525 506-603 (648)
249 COG2190 NagE Phosphotransferas 37.4 83 0.0018 32.4 6.2 28 462-491 86-113 (156)
250 COG0157 NadC Nicotinate-nucleo 37.0 32 0.00068 38.6 3.4 23 205-229 66-88 (280)
251 cd01134 V_A-ATPase_A V/A-type 36.3 1.1E+02 0.0024 35.8 7.7 72 190-267 38-112 (369)
252 TIGR01042 V-ATPase_V1_A V-type 34.8 78 0.0017 39.2 6.5 53 211-265 124-179 (591)
253 TIGR01995 PTS-II-ABC-beta PTS 34.6 40 0.00087 42.3 4.2 25 202-228 543-567 (610)
254 PRK03140 phosphatidylserine de 31.6 53 0.0011 36.7 4.1 68 190-263 191-258 (259)
255 TIGR02645 ARCH_P_rylase putati 31.6 72 0.0016 38.8 5.5 41 487-527 408-472 (493)
256 PRK09824 PTS system beta-gluco 30.8 86 0.0019 39.5 6.2 25 202-228 559-583 (627)
257 PRK14844 bifunctional DNA-dire 30.6 67 0.0015 46.1 5.5 36 211-248 2426-2461(2836)
258 TIGR01995 PTS-II-ABC-beta PTS 29.5 57 0.0012 41.0 4.4 60 461-522 542-608 (610)
259 TIGR02645 ARCH_P_rylase putati 29.0 84 0.0018 38.2 5.4 45 224-268 405-473 (493)
260 PRK10255 PTS system N-acetyl g 27.4 74 0.0016 40.1 4.8 26 202-229 579-604 (648)
261 PRK04350 thymidine phosphoryla 25.3 1E+02 0.0022 37.5 5.3 41 487-527 400-464 (490)
262 KOG1556|consensus 25.0 51 0.0011 36.0 2.4 85 3-113 17-117 (309)
263 PRK08072 nicotinate-nucleotide 24.9 67 0.0015 36.2 3.5 23 205-229 66-88 (277)
264 TIGR03327 AMP_phos AMP phospho 24.8 1E+02 0.0022 37.6 5.1 39 489-527 411-473 (500)
265 TIGR00163 PS_decarb phosphatid 24.0 76 0.0016 35.0 3.6 59 203-262 178-236 (238)
266 cd01134 V_A-ATPase_A V/A-type 24.0 2.4E+02 0.0052 33.1 7.7 70 451-526 39-111 (369)
267 PF01551 Peptidase_M23: Peptid 23.6 2.4E+02 0.0052 25.8 6.5 55 199-264 19-73 (96)
268 PRK03934 phosphatidylserine de 23.5 1.2E+02 0.0027 33.9 5.2 56 462-523 210-265 (265)
269 TIGR02643 T_phosphoryl thymidi 23.3 62 0.0013 38.8 2.9 21 246-266 384-404 (437)
270 TIGR02644 Y_phosphoryl pyrimid 23.1 72 0.0016 37.9 3.4 41 486-526 327-398 (405)
271 PRK05820 deoA thymidine phosph 22.9 64 0.0014 38.7 3.0 54 63-117 172-232 (440)
272 TIGR02643 T_phosphoryl thymidi 22.7 1.2E+02 0.0025 36.5 5.0 39 489-527 336-405 (437)
273 PRK06543 nicotinate-nucleotide 22.5 80 0.0017 35.7 3.5 24 204-229 66-89 (281)
274 cd01572 QPRTase Quinolinate ph 22.3 88 0.0019 35.1 3.8 26 202-229 57-82 (268)
275 cd08060 MPN_UPF0172 Mov34/MPN/ 22.2 2.5E+02 0.0054 29.7 6.9 69 6-92 9-80 (182)
276 TIGR02946 acyl_WS_DGAT acyltra 21.8 5.6E+02 0.012 30.4 10.8 166 702-903 229-440 (446)
277 KOG3050|consensus 21.7 1.3E+02 0.0028 33.0 4.6 37 71-113 81-117 (299)
278 PRK05742 nicotinate-nucleotide 21.5 87 0.0019 35.4 3.5 23 205-229 68-90 (277)
279 COG1155 NtpA Archaeal/vacuolar 21.4 1.9E+02 0.0041 35.4 6.3 72 190-268 105-180 (588)
280 PRK06096 molybdenum transport 21.3 88 0.0019 35.4 3.5 23 205-229 63-85 (284)
281 cd01573 modD_like ModD; Quinol 21.2 89 0.0019 35.2 3.5 23 205-229 58-80 (272)
282 TIGR00163 PS_decarb phosphatid 21.2 1E+02 0.0022 33.9 4.0 60 462-522 177-236 (238)
283 PRK05820 deoA thymidine phosph 20.9 1.3E+02 0.0029 36.1 5.1 40 488-527 336-406 (440)
284 COG0157 NadC Nicotinate-nucleo 20.9 81 0.0018 35.4 3.0 23 464-488 65-87 (280)
285 PRK09016 quinolinate phosphori 20.8 92 0.002 35.5 3.5 23 205-229 87-109 (296)
286 PRK06978 nicotinate-nucleotide 20.5 95 0.0021 35.3 3.6 23 205-229 84-106 (294)
287 PRK06078 pyrimidine-nucleoside 20.4 1.4E+02 0.0029 36.0 4.9 38 488-525 331-399 (434)
288 PRK07428 nicotinate-nucleotide 20.3 95 0.0021 35.3 3.5 23 205-229 74-96 (288)
289 PRK06078 pyrimidine-nucleoside 20.2 78 0.0017 38.0 2.9 18 247-264 381-398 (434)
290 PRK07896 nicotinate-nucleotide 20.1 97 0.0021 35.2 3.5 24 204-229 77-100 (289)
291 PF06898 YqfD: Putative stage 20.0 1.4E+02 0.003 35.4 5.0 53 201-262 167-226 (385)
No 1
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.3e-94 Score=867.82 Aligned_cols=539 Identities=24% Similarity=0.375 Sum_probs=413.4
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~ 267 (1045)
++|+||+||++|.||+|++|+ |++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+..+
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~~ 80 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWL--KAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEAG 80 (590)
T ss_pred eeEECCCCCCCccEEEEEEEE--ECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeecc
Confidence 579999999999999999999 999999999999999999999999999999999999999999999999999997543
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394 268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL 347 (1045)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1045)
+......... .++. +++...++.. ..+. . .++..+. .. .
T Consensus 81 ~~~~~~~~~~----~~~~------~~~~~~~~~~----~~~~----~-~~~~~~~-----~~-----~------------ 119 (590)
T TIGR02927 81 EASAEAGAED----SAAA------AEPEEAPAEE----APKE----E-PKAAPAE-----SV-----E------------ 119 (590)
T ss_pred cccccccccc----cccc------cccccccccc----cccc----c-ccccccc-----cc-----c------------
Confidence 3211000000 0000 0000000000 0000 0 0000000 00 0
Q ss_pred cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCC
Q psy6394 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHL 427 (1045)
Q Consensus 348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~ 427 (1045)
.+|
T Consensus 120 ~a~----------------------------------------------------------------------------- 122 (590)
T TIGR02927 120 QAP----------------------------------------------------------------------------- 122 (590)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCcccccccccc--cccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEE
Q psy6394 428 STPPLQCHHHLHTS--CIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505 (1045)
Q Consensus 428 s~~~~~~~~~~~~s--~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~ 505 (1045)
.++.. ....+.++|+||+||++|+||+|.+|+ |++||.|++||+||+|||||+++||+||++|+|.+
T Consensus 123 ---------~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~ 191 (590)
T TIGR02927 123 ---------AESSAPSQGGGAATDIEMPELGESVTEGTITQWL--KAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILE 191 (590)
T ss_pred ---------cccccccccCCCceEEEcCCCCCCcceEEEEEEE--eCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEE
Confidence 00000 001224789999999999999999999 99999999999999999999999999999999999
Q ss_pred EeeCCCCEEecCCceEEEeecCccccc------cc-c------ccccc--c-----CCC--------CCC----CC----
Q psy6394 506 VYYGEGDVALVGKPLLDIEVEDEGVAA------EE-A------DSLDR--K-----AAP--------GVS----EV---- 549 (1045)
Q Consensus 506 i~~~~G~~v~vg~~l~~i~~~~~~~~~------~~-~------~~~~~--~-----~~~--------~~~----~~---- 549 (1045)
|++++|+.|++|++|++|+.+++..+. .. . .+.+. . ..+ ... ..
T Consensus 192 i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (590)
T TIGR02927 192 ILAEEDDTVDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAA 271 (590)
T ss_pred EecCCCCEecCCCEEEEEecCCCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccc
Confidence 999999999999999999754322100 00 0 00000 0 000 000 00
Q ss_pred -CCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeecccccccccccc
Q psy6394 550 -NTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT 628 (1045)
Q Consensus 550 -~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1045)
....+++||++||||+|+||||+.|+|||++|||+|+||++|+.........+.++++..+
T Consensus 272 ~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~------------------ 333 (590)
T TIGR02927 272 NSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAA------------------ 333 (590)
T ss_pred cccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccC------------------
Confidence 1124678999999999999999999999999999999999997532111000000000000
Q ss_pred ccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEee
Q psy6394 629 EANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTE 707 (1045)
Q Consensus 629 ~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~ 707 (1045)
+ .....+. ..+... ......+.+||++|||.||++|++| +++||+|++.
T Consensus 334 -----~----------------------~~~~~~~--~~~~~~-~~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~ 383 (590)
T TIGR02927 334 -----P----------------------AAAAAAS--ASPAPA-KAHLRGTTQKANRIREITAKKTREALQASAQLTQLH 383 (590)
T ss_pred -----c----------------------ccccccc--CCCccc-cccccCceeeccHHHHHHHHHHHHHhccCCeEEEEe
Confidence 0 0000000 000000 0001245689999999999999999 7899999999
Q ss_pred cccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeee
Q psy6394 708 EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNI 787 (1045)
Q Consensus 708 evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvI 787 (1045)
++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|+++++.|++++++||||||++++||+||||
T Consensus 384 evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvI 463 (590)
T TIGR02927 384 EVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVI 463 (590)
T ss_pred EEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEeccc
Confidence 99999999999999976555423899999999999999999999999999876778999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEec--cCC-
Q psy6394 788 KSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD--AEM- 864 (1045)
Q Consensus 788 r~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~--~~g- 864 (1045)
||+|+++|.+|++++++|++++|+|||+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+|+ .+|
T Consensus 464 k~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~ 543 (590)
T TIGR02927 464 HNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGI 543 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 344
Q ss_pred -ceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 865 -RIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 865 -~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
.+++|++|++||+||||||||+++|+||+.|+++ ||+|.++
T Consensus 544 ~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~---LE~~~~~ 585 (590)
T TIGR02927 544 DSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDR---LEEAAFE 585 (590)
T ss_pred ccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHH---HhCcccc
Confidence 4999999999999999999999999999999999 9997654
No 2
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.6e-89 Score=818.28 Aligned_cols=518 Identities=26% Similarity=0.400 Sum_probs=409.8
Q ss_pred EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecCc
Q psy6394 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
+|+||+||+. .+|+|++|+ |++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+.++.
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~--v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~~ 78 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVL--VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGAG 78 (546)
T ss_pred ceecCCCCCC-CceEEEEEE--eCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecccc
Confidence 5899999987 899999999 9999999999999999999999999999999999999999999999999999974332
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCcccccccccccccc
Q psy6394 269 GVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILA 348 (1045)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 348 (1045)
... . .....+ .. ++.. . ..+. + . +
T Consensus 79 ~~~-~---------~~~~~~-~~------~~~~------~-------~~~~--~------~-----~------------- 102 (546)
T TIGR01348 79 AQA-Q---------AEAKKE-AA------PAPT------A-------GAPA--P------A-----A------------- 102 (546)
T ss_pred ccc-c---------cccccc-cc------cccc------c-------cccc--c------c-----c-------------
Confidence 100 0 000000 00 0000 0 0000 0 0 0
Q ss_pred ChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCCC
Q psy6394 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLS 428 (1045)
Q Consensus 349 tP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~s 428 (1045)
+ + ..
T Consensus 103 -~--------------------------------------~-------------------------------------~~ 106 (546)
T TIGR01348 103 -Q--------------------------------------A-------------------------------------QA 106 (546)
T ss_pred -c--------------------------------------c-------------------------------------cc
Confidence 0 0 00
Q ss_pred CCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee
Q psy6394 429 TPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 508 (1045)
Q Consensus 429 ~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~ 508 (1045)
.+ +.+. ....++|+||++|+ |+||+|++|+ |++||.|++||+|++|||||+.++|+||++|+|.++++
T Consensus 107 ~~--------~~~~-~~~~~~~~~P~~g~-~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v 174 (546)
T TIGR01348 107 AP--------AAGQ-SSGVQEVTVPDIGD-IEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV 174 (546)
T ss_pred cc--------cccc-cCCceEEeCCCCCC-cceeEEeEEe--eCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEec
Confidence 00 0000 01136899999999 9999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEecCCceEEEeecCccccc--cc--c---cccccc-----C-CCC--C--CCC-------CCCCC-CCCcccccc
Q psy6394 509 GEGDVALVGKPLLDIEVEDEGVAA--EE--A---DSLDRK-----A-APG--V--SEV-------NTPDT-SDQPNETLH 563 (1045)
Q Consensus 509 ~~G~~v~vg~~l~~i~~~~~~~~~--~~--~---~~~~~~-----~-~~~--~--~~~-------~~~~~-~asP~vr~l 563 (1045)
++|+.|++|++|++|+..++.... .+ . .+.+.. . .+. . .+. ....+ ++||++|++
T Consensus 175 ~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~l 254 (546)
T TIGR01348 175 KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRL 254 (546)
T ss_pred CCCCEecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHH
Confidence 999999999999999754422100 00 0 000000 0 000 0 000 01123 689999999
Q ss_pred CCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccc
Q psy6394 564 KDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVD 643 (1045)
Q Consensus 564 a~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d 643 (1045)
|+++||||+.|+|||++|||+++||++|+...... .++.+++ ++.
T Consensus 255 A~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~-~~~~~~~--~~~-------------------------------- 299 (546)
T TIGR01348 255 AREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVR-AQAAAAS--AAG-------------------------------- 299 (546)
T ss_pred HHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccc-cCccccc--ccC--------------------------------
Confidence 99999999999999999999999999997432110 0000000 000
Q ss_pred ccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHH
Q psy6394 644 TTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVS 722 (1045)
Q Consensus 644 ~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~ 722 (1045)
+.+..+..+..........+.+||++|||.||++|.+| +++||+|++.++|+++|+++|++++
T Consensus 300 ----------------~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~ 363 (546)
T TIGR01348 300 ----------------GAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQN 363 (546)
T ss_pred ----------------CccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHH
Confidence 00000000000000011246689999999999999999 8999999999999999999999999
Q ss_pred HHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHH
Q psy6394 723 ALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITREL 802 (1045)
Q Consensus 723 ~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l 802 (1045)
+.+.+.| .|+|+++||+||+++||++||.||++|+++++.|++++++||||||++++||+|||||++|.+++.+|++++
T Consensus 364 ~~~~~~g-~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~ 442 (546)
T TIGR01348 364 AAVEKEG-VKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALEL 442 (546)
T ss_pred hhhhhcC-CcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHH
Confidence 8666555 899999999999999999999999999876678999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEecccee
Q psy6394 803 LRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRV 882 (1045)
Q Consensus 803 ~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRv 882 (1045)
++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+++ +|++++|++|+++|+|||||
T Consensus 443 ~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~~~~~m~ltls~DHRv 521 (546)
T TIGR01348 443 SDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFEPRLMLPLSLSYDHRV 521 (546)
T ss_pred HHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEEEEEEEEEeEeccchh
Confidence 99999999999999999999999999999999999999999999999999999999995 67999999999999999999
Q ss_pred ecchhhhhhhhhhhhcccccccCCcce
Q psy6394 883 VDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 883 iDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|||+++|+||+.|+++ +|+|..++
T Consensus 522 iDGa~aa~Fl~~~~~~---le~P~~ll 545 (546)
T TIGR01348 522 IDGADAARFTTYICES---LADIRRLL 545 (546)
T ss_pred cChHHHHHHHHHHHHH---HhCHHhhh
Confidence 9999999999999999 99998654
No 3
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=5.8e-86 Score=801.61 Aligned_cols=594 Identities=25% Similarity=0.339 Sum_probs=417.2
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~ 267 (1045)
.+|+||+|| |+||+|++|+ |++||.|++||+|++|||||++++|+||.+|+|.++++++||.|++|++|+.|+.++
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~--v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~~ 78 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESAD 78 (633)
T ss_pred ceEeeCCCC--CceEEEEEEE--eCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEeccc
Confidence 479999999 9999999999 999999999999999999999999999999999999999999999999999997432
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394 268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL 347 (1045)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1045)
......+ +.++. +.....+. .+.+.+ ....
T Consensus 79 ~~~~~~~------~~~~~------~~~~~~~~------------~~~~~~--------------------------~~~i 108 (633)
T PRK11854 79 GAADAAP------AQAEE------KKEAAPAA------------APAAAA--------------------------AKDV 108 (633)
T ss_pred ccccccc------ccccc------cccccccc------------ccccCC--------------------------ceEE
Confidence 1100000 00000 00000000 000000 0000
Q ss_pred cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccc-------------cccccceeEEecceeee
Q psy6394 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTA-------------HVREASNVISIRGYVKG 414 (1045)
Q Consensus 348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~g~r~~ 414 (1045)
..|..- ..+-.+-...+ -.+-.|.++|.+.-+...........+. .+...+....|.....
T Consensus 109 ~lp~~g--~~eg~v~~~~v---~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~~- 182 (633)
T PRK11854 109 HVPDIG--SDEVEVTEILV---KVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVAGE- 182 (633)
T ss_pred ecccCC--CCCceEeEEEe---CCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCEEcCCcEeeEEecccc-
Confidence 000000 00000000000 0112233333332222111111100000 0000111111110000
Q ss_pred cccccccccCCCCCCCCccccccccccc-ccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceee
Q psy6394 415 MFKSMTEAHGHHLSTPPLQCHHHLHTSC-IRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASV 493 (1045)
Q Consensus 415 m~k~Mt~S~~~~~s~~~~~~~~~~~~s~-~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ 493 (1045)
..+ .+. +... ...+.... ...+.++|+||+|| |+||+|++|+ |++||.|++||+||+|||||+.+
T Consensus 183 --~~~-~~~----~~~~---~~~~~~~~~~a~~~~~~~~p~lg--~~eg~v~~w~--v~~Gd~V~~g~~l~~vetdK~~~ 248 (633)
T PRK11854 183 --APA-AAP----AAAE---AAAPAAAPAAAAGVKDVNVPDIG--GDEVEVTEVM--VKVGDKVEAEQSLITVEGDKASM 248 (633)
T ss_pred --ccc-ccc----cccc---cccccccccccCCceEEecCCCc--ccceEEEEEE--ecCCCeecCCCceEEEEecceee
Confidence 000 000 0000 00011111 12356899999999 8999999999 99999999999999999999999
Q ss_pred EEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccc-----cccccc--c-CCC--CC--CC-------CCCCCC
Q psy6394 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEE-----ADSLDR--K-AAP--GV--SE-------VNTPDT 554 (1045)
Q Consensus 494 ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~-----~~~~~~--~-~~~--~~--~~-------~~~~~~ 554 (1045)
+|+||++|+|.+|++++|+.|++|++|+.|+.+++.....+ ..+.+. . +.+ .+ .. .....+
T Consensus 249 ~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (633)
T PRK11854 249 EVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYV 328 (633)
T ss_pred EeeCCCCeEEEEEecCCCCEecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCcc
Confidence 99999999999999999999999999999975443211100 000000 0 000 00 00 011235
Q ss_pred CCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCC
Q psy6394 555 SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIP 634 (1045)
Q Consensus 555 ~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 634 (1045)
++||++|++|+++||||+.|+|||++|||+++||++|+........ +++.++..
T Consensus 329 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~-~~~~~~~~------------------------- 382 (633)
T PRK11854 329 HATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAE-AAPAAAAA------------------------- 382 (633)
T ss_pred CCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccc-cCCccccc-------------------------
Confidence 7899999999999999999999999999999999999753211000 00000000
Q ss_pred CccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchH
Q psy6394 635 SLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQ 713 (1045)
Q Consensus 635 ~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~ 713 (1045)
....+.....+.......+..+++||+++||.||++|.+| +++||+|++.++|+|.
T Consensus 383 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~ 439 (633)
T PRK11854 383 -----------------------GGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITE 439 (633)
T ss_pred -----------------------ccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHH
Confidence 0000000000000000011235689999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHHHh-ccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccc
Q psy6394 714 LRDVKNQVSALYQE-KFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNK 792 (1045)
Q Consensus 714 l~~~r~~~~~~~~~-~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~ 792 (1045)
|+++|+++++.... ..+.|+|+++||+||+++||++||.||++|+++++++++++++||||||++++||++||||+++.
T Consensus 440 l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~ 519 (633)
T PRK11854 440 LEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNK 519 (633)
T ss_pred HHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCcc
Confidence 99999998854332 22389999999999999999999999999986567899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEee
Q psy6394 793 LCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL 872 (1045)
Q Consensus 793 ~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m 872 (1045)
+++.+|+++++++.+++|+|+|+++|++||||||||+|+||+++|+|||||||+||||+|++.++|+++ +|.+++|++|
T Consensus 520 ~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~~r~~m 598 (633)
T PRK11854 520 KGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFAPRLML 598 (633)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 6789999999
Q ss_pred eEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 873 NVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 873 ~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
+++|+||||+|||+++|+||+.|+++ ||+|..+
T Consensus 599 ~lslt~DHRviDGa~aa~Fl~~lk~~---LE~p~~l 631 (633)
T PRK11854 599 PLSLSYDHRVIDGADGARFITIINDR---LSDIRRL 631 (633)
T ss_pred EEeEEccchhcchHHHHHHHHHHHHH---HhCHHhh
Confidence 99999999999999999999999999 9999854
No 4
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.4e-82 Score=762.80 Aligned_cols=523 Identities=32% Similarity=0.479 Sum_probs=410.1
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~ 267 (1045)
++++||++|+ |.+|+|++|+ |++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~--v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAG 79 (547)
T ss_pred ceeecCCcCC-CceEEEEEEE--cCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEecccc
Confidence 5799999999 9999999999 999999999999999999999999999999999999999999999999999996432
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCccccccccccccc
Q psy6394 268 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKIL 347 (1045)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (1045)
....+. +.++. +. +..+ +...+..+.
T Consensus 80 ~~~~~~-------~~~~~------~~----~~~~----~~~~~~~~~--------------------------------- 105 (547)
T PRK11855 80 AAAAAA-------APAAA------AA----PAAA----AAAAPAPAA--------------------------------- 105 (547)
T ss_pred cccccc-------ccccc------cc----cccc----ccccccccc---------------------------------
Confidence 200000 00000 00 0000 000000000
Q ss_pred cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccccccccceeEEecceeeecccccccccCCCC
Q psy6394 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHL 427 (1045)
Q Consensus 348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~r~~m~k~Mt~S~~~~~ 427 (1045)
+.|+
T Consensus 106 ~~~~---------------------------------------------------------------------------- 109 (547)
T PRK11855 106 AAPA---------------------------------------------------------------------------- 109 (547)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 428 STPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 428 s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
.. +.. .....++|+||+||+ |+||+|++|+ |++||.|++||.|++|||||+.++|+||++|+|.+++
T Consensus 110 ~~--------~~~--~~~~~~~~~~P~~g~-~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~ 176 (547)
T PRK11855 110 AA--------AAA--AGGGVVEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176 (547)
T ss_pred cc--------cCc--ccCCceEEecCCCCC-cceeEEeEEE--eCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEe
Confidence 00 000 011246899999999 9999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEecCCceEEEeecCccc-cc---ccccc----cc-ccCCC------CCC--C-CC-CCCC-CCCccccccCCCC
Q psy6394 508 YGEGDVALVGKPLLDIEVEDEGV-AA---EEADS----LD-RKAAP------GVS--E-VN-TPDT-SDQPNETLHKDPN 567 (1045)
Q Consensus 508 ~~~G~~v~vg~~l~~i~~~~~~~-~~---~~~~~----~~-~~~~~------~~~--~-~~-~~~~-~asP~vr~la~e~ 567 (1045)
+++|+.|.+|++|++|...++.. .. ....+ .+ ....+ ... . .. .... ++||++|++|+++
T Consensus 177 ~~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~ 256 (547)
T PRK11855 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLAREL 256 (547)
T ss_pred cCCCCEecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHh
Confidence 99999999999999997543211 00 00000 00 00000 000 0 00 1123 7899999999999
Q ss_pred CCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccccccc
Q psy6394 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQL 647 (1045)
Q Consensus 568 gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~ 647 (1045)
||||+.|+|||++|||+++||++|+........ .++....+ . +.
T Consensus 257 gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~--~~~~~~~~---------------------~-~~------------ 300 (547)
T PRK11855 257 GVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAA--AAAAAAAA---------------------A-GG------------ 300 (547)
T ss_pred CCCHHHCcCCCCCCcEeHHHHHHHhhccccccc--cccccccc---------------------c-cc------------
Confidence 999999999999999999999999753211000 00000000 0 00
Q ss_pred ccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHH
Q psy6394 648 RDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726 (1045)
Q Consensus 648 ~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~ 726 (1045)
...++ ...+.......+..+.+||+++||.||++|++| +++||+|++.++|+++|+++|+++++.+.
T Consensus 301 -----------~~~~~-~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~ 368 (547)
T PRK11855 301 -----------GGLGL-LPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAE 368 (547)
T ss_pred -----------ccccc-cCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhh
Confidence 00000 000000000011245689999999999999999 79999999999999999999999997666
Q ss_pred hccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHH
Q psy6394 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQ 806 (1045)
Q Consensus 727 ~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~ 806 (1045)
+.| .++||++|++||+++||++||.||++|+++++.+++++++|||+||++++||++|||+|++.+++.+|++++++++
T Consensus 369 ~~g-~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~ 447 (547)
T PRK11855 369 KAG-VKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELA 447 (547)
T ss_pred hcC-CCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHH
Confidence 556 9999999999999999999999999998656789999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecch
Q psy6394 807 GCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGA 886 (1045)
Q Consensus 807 ~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa 886 (1045)
+++|+|+|+++|++||||||||+|+||.++|+|+|||||+||||+|++.++|++ .+|.+..|++|+++|+||||+|||+
T Consensus 448 ~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~-~~~~~~~r~~m~lslt~DHRviDG~ 526 (547)
T PRK11855 448 KKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVW-DGKEFVPRLMLPLSLSYDHRVIDGA 526 (547)
T ss_pred HHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeee-eCCEEEEEeEEEEeEEccchhcCcH
Confidence 999999999999999999999999999999999999999999999999999976 5788999999999999999999999
Q ss_pred hhhhhhhhhhhcccccccCCcce
Q psy6394 887 TVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 887 ~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
++|+||+.|+++ |++|..++
T Consensus 527 ~aa~Fl~~l~~~---le~p~~ll 546 (547)
T PRK11855 527 TAARFTNYLKQL---LADPRRML 546 (547)
T ss_pred HHHHHHHHHHHH---HhCHHhhh
Confidence 999999999999 99998654
No 5
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=3.6e-80 Score=712.53 Aligned_cols=396 Identities=27% Similarity=0.446 Sum_probs=335.4
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.++|+||+||++|+||+|++|+ |++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|++|+..
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 2 MVEIKVPTLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred CeeEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4589999999999999999999 99999999999999999999999999999999999999999999999999999865
Q ss_pred Cccccccccc--cccccC--CCC-C-CCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCC
Q psy6394 527 DEGVAAEEAD--SLDRKA--APG-V-SEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETN 600 (1045)
Q Consensus 527 ~~~~~~~~~~--~~~~~~--~~~-~-~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~ 600 (1045)
++..+..+.. .++..+ .+. + .........+||++|++|+|+||||++|+|||++|||+++||++|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~-- 157 (407)
T PRK05704 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAA-- 157 (407)
T ss_pred CcccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhccccc--
Confidence 4322111100 000000 000 0 0011123578999999999999999999999999999999999997431110
Q ss_pred CCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCccee
Q psy6394 601 PAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNV 680 (1045)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 680 (1045)
+.++++ . .... .+.. ......+.
T Consensus 158 -~~~~~~-~-------------------------------------------------~~~~----~~~~--~~~~~~~~ 180 (407)
T PRK05704 158 -PAAPAA-A-------------------------------------------------APAA----APAP--LGARPEER 180 (407)
T ss_pred -CCCCCC-C-------------------------------------------------CCcC----CCcc--ccCCcceE
Confidence 000000 0 0000 0000 00112356
Q ss_pred eecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcC
Q psy6394 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDP 759 (1045)
Q Consensus 681 ~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~ 759 (1045)
+||+++||.||++|++| +++||+|++.++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|++
T Consensus 181 vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~ 260 (407)
T PRK05704 181 VPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDG 260 (407)
T ss_pred eeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcC
Confidence 89999999999999999 89999999999999999999999997665543389999999999999999999999999985
Q ss_pred CCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecc
Q psy6394 760 TQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQP 839 (1045)
Q Consensus 760 ~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tp 839 (1045)
+++++++++||||||++++||+|||||++|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+|+|
T Consensus 261 --~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tp 338 (407)
T PRK05704 261 --DDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTP 338 (407)
T ss_pred --CeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceec
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 840 IIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 840 ii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
||||||+||||+|+++++|+++ +|++++|++|+++|+||||||||+++|+||+.++++ ||+|..++
T Consensus 339 iIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~---le~p~~ll 404 (407)
T PRK05704 339 IINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKEL---LEDPERLL 404 (407)
T ss_pred cccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHH---hhCHHHHh
Confidence 9999999999999999999985 789999999999999999999999999999999999 99998754
No 6
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=9.6e-80 Score=707.39 Aligned_cols=392 Identities=26% Similarity=0.444 Sum_probs=333.9
Q ss_pred EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394 449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
+|+||+||++|+||+|++|+ |++||.|++||+|++|||||+.+||+||.+|+|.++++++|+.|++|++|++|+..++
T Consensus 2 ~i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 2 EIKVPELAESITEGTVAEWH--KKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGND 79 (403)
T ss_pred eEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCC
Confidence 68999999999999999999 9999999999999999999999999999999999999999999999999999985432
Q ss_pred cccccccccc---cccC-CC-CC-CCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCC
Q psy6394 529 GVAAEEADSL---DRKA-AP-GV-SEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA 602 (1045)
Q Consensus 529 ~~~~~~~~~~---~~~~-~~-~~-~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~ 602 (1045)
..+..+.... +..+ .+ .+ +......+.+||++|++|+++||||+.|+|||++|||+++||++|+..... . +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~--~-~ 156 (403)
T TIGR01347 80 ATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS--A-Q 156 (403)
T ss_pred CcccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc--c-C
Confidence 1110000000 0000 00 00 001112457899999999999999999999999999999999999743110 0 0
Q ss_pred ccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeee
Q psy6394 603 HTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIP 682 (1045)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 682 (1045)
.+++ . .+.+ .|.. .....+.+|
T Consensus 157 ~~~~--~--------------------------------------------------~~~~---~~~~---~~~~~~~~p 178 (403)
T TIGR01347 157 APAP--A--------------------------------------------------AAAK---APAN---FTRPEERVK 178 (403)
T ss_pred CCCC--C--------------------------------------------------cccC---Cccc---cCCCceEee
Confidence 0000 0 0000 0000 011235689
Q ss_pred cCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC
Q psy6394 683 IRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ 761 (1045)
Q Consensus 683 ls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~ 761 (1045)
|+++||.||++|.+| +++||+|++.++|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.||++|++
T Consensus 179 ls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~-- 256 (403)
T TIGR01347 179 MTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDG-- 256 (403)
T ss_pred CcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcC--
Confidence 999999999999999 79999999999999999999999998666553389999999999999999999999999985
Q ss_pred ceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccc
Q psy6394 762 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841 (1045)
Q Consensus 762 ~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii 841 (1045)
+++++++++||||||++++||+|||||++|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+|+|||
T Consensus 257 ~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpii 336 (403)
T TIGR01347 257 DDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPII 336 (403)
T ss_pred CEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 842 ~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
||||+||||+|+++++|++. ||++++|++|+++|+||||||||+++|+||+.++++ ||+|..++
T Consensus 337 n~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~---le~p~~ll 400 (403)
T TIGR01347 337 NPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKEL---LEDPRRLL 400 (403)
T ss_pred cCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHH---hcCHHHHH
Confidence 99999999999999999994 699999999999999999999999999999999999 99998654
No 7
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.6e-79 Score=717.15 Aligned_cols=408 Identities=25% Similarity=0.356 Sum_probs=343.2
Q ss_pred CcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCC
Q psy6394 431 PLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510 (1045)
Q Consensus 431 ~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~ 510 (1045)
.-...|+|++.......++++||+||++|+||+|++|+ |++||.|++||+|++|||||+++|++||.+|+|.+|++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~--vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~e 173 (539)
T PLN02744 96 QMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWL--KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173 (539)
T ss_pred cccccccccccccCCCCceEeCCCCCCCcceeEEEEEE--ecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecC
Confidence 34455677776665567999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CC-EEecCCceEEEeecCcccc------c----ccc---c-cccc----c----CCCCCC-------CC--CCCCCCCCc
Q psy6394 511 GD-VALVGKPLLDIEVEDEGVA------A----EEA---D-SLDR----K----AAPGVS-------EV--NTPDTSDQP 558 (1045)
Q Consensus 511 G~-~v~vg~~l~~i~~~~~~~~------~----~~~---~-~~~~----~----~~~~~~-------~~--~~~~~~asP 558 (1045)
|+ .|++|++|+++..++++.+ + .++ + +.++ . +++.+. .. ....++++|
T Consensus 174 G~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP 253 (539)
T PLN02744 174 GAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASP 253 (539)
T ss_pred CCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCc
Confidence 96 7999999999853222110 0 000 0 0000 0 000000 00 112357899
Q ss_pred cccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccc
Q psy6394 559 NETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRL 638 (1045)
Q Consensus 559 ~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l 638 (1045)
++|++|+|+||||+.|+|||++|||+++||++|+........ .+ +
T Consensus 254 ~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~--~~-~-------------------------------- 298 (539)
T PLN02744 254 LARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGAT--AP-P-------------------------------- 298 (539)
T ss_pred hhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccC--CC-C--------------------------------
Confidence 999999999999999999999999999999999743111000 00 0
Q ss_pred cccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHH
Q psy6394 639 TEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDV 717 (1045)
Q Consensus 639 ~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~ 717 (1045)
+.+. ..+ ....+++||++|||.||++|.+| +++||+|++.++|+++|+++
T Consensus 299 ---------------------~~~~--~~~------~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~l 349 (539)
T PLN02744 299 ---------------------STDS--KAP------ALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMAL 349 (539)
T ss_pred ---------------------Cccc--CCC------CCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHH
Confidence 0000 000 01135679999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHH
Q psy6394 718 KNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLD 797 (1045)
Q Consensus 718 r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~e 797 (1045)
|+++++.+....+.|+|+++||+||+++||++||.||++|++ +.|++++++||||||++++||+||||||+|++++.+
T Consensus 350 R~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~--~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~e 427 (539)
T PLN02744 350 RSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTD--DYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLST 427 (539)
T ss_pred HHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeecc--CcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHH
Confidence 999997665553389999999999999999999999999985 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCccCCCceEeeccC-CccceeecccccccceeeEeeccceeEeEec-cCCceeEEEeeeEE
Q psy6394 798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG-NVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD-AEMRIVAKCILNVT 875 (1045)
Q Consensus 798 i~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG-~~G~~~~tpii~~pq~ailavG~i~~~p~~~-~~g~i~~~~~m~ls 875 (1045)
|++++++|.+++|+|+|+++||+||||||||+| +||+.+|+|||||||+||||+|+++++|++. .+|++++|++|+++
T Consensus 428 Ia~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~ls 507 (539)
T PLN02744 428 IAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVT 507 (539)
T ss_pred HHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEe
Confidence 999999999999999999999999999999998 8999999999999999999999999999984 57899999999999
Q ss_pred EeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 876 WAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 876 lt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|+||||||||+++|+||+.++++ +|+|..++
T Consensus 508 Ls~DHRvIDGa~AA~FL~~lk~~---LE~P~~ll 538 (539)
T PLN02744 508 LSCDHRVIDGAIGAEWLKAFKGY---IENPESML 538 (539)
T ss_pred EecchhhhCcHHHHHHHHHHHHH---hcCHHhhh
Confidence 99999999999999999999999 99998654
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=7.9e-78 Score=695.68 Aligned_cols=404 Identities=38% Similarity=0.622 Sum_probs=334.8
Q ss_pred EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCcc
Q psy6394 450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 529 (1045)
Q Consensus 450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~ 529 (1045)
|+||+||++|+||+|++|+ |++||.|++||+|+++||||+.++++|+.+|+|.++++++|+.+++|++|++|+.+++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~ 78 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQ 78 (416)
T ss_pred CCCCCCCCCccEEEEEEEE--eCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCc
Confidence 5799999999999999999 99999999999999999999999999999999999999999999999999999754432
Q ss_pred cccccccccccc----C--CCCCC-CCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCC-
Q psy6394 530 VAAEEADSLDRK----A--APGVS-EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNP- 601 (1045)
Q Consensus 530 ~~~~~~~~~~~~----~--~~~~~-~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~- 601 (1045)
.+.....+.+.. + .+... ........++|++|++|+++|||++.|+|||++|||+++||++|++.......+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~ 158 (416)
T PLN02528 79 HLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSS 158 (416)
T ss_pred cccccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccc
Confidence 110000000000 0 00000 001113578999999999999999999999999999999999997532110000
Q ss_pred CccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceee
Q psy6394 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI 681 (1045)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 681 (1045)
+.+++ .. +. .+..+... ..+. ......+.+
T Consensus 159 ~~~~~-~~------------------------~~---------------------~~~~~~~~-~~~~---~~~~~~~~~ 188 (416)
T PLN02528 159 SAEEA-TI------------------------AE---------------------QEEFSTSV-STPT---EQSYEDKTI 188 (416)
T ss_pred ccccc-cC------------------------Cc---------------------cccccccC-CCcc---cccCcceee
Confidence 00000 00 00 00000000 0000 001124568
Q ss_pred ecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC
Q psy6394 682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ 761 (1045)
Q Consensus 682 pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~ 761 (1045)
||+++||.||++|.+|+++||+|++.++|+++|+++|+++++.....| .|+|+++||+||+++||++||.||++|++++
T Consensus 189 ~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~~g-~kls~~~~likA~a~aL~~~P~~Na~~~~~~ 267 (416)
T PLN02528 189 PLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTDPT-VKHTFLPFLIKSLSMALSKYPLLNSCFNEET 267 (416)
T ss_pred ccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhhcC-CcccHHHHHHHHHHHHHHhCchhhEEEecCC
Confidence 999999999999999999999999999999999999999997544445 9999999999999999999999999998766
Q ss_pred ceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccc
Q psy6394 762 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841 (1045)
Q Consensus 762 ~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii 841 (1045)
+.+++++++||||||++++||+|||||++|.+++.+|+++++++.+++|+|+|+++||+||||||||+|+||+.+|+|||
T Consensus 268 ~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIi 347 (416)
T PLN02528 268 SEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVL 347 (416)
T ss_pred ceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 842 ~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
||||+||||+|+++++|++..+|++++|++|+++|+||||||||+++|+||+.++++ ||+|..++
T Consensus 348 n~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~---le~P~~ll 412 (416)
T PLN02528 348 NLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSY---VEKPELLM 412 (416)
T ss_pred cCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHH---HhCHHHHH
Confidence 999999999999999999966789999999999999999999999999999999999 99998764
No 9
>KOG0558|consensus
Probab=100.00 E-value=3.8e-78 Score=640.89 Aligned_cols=407 Identities=43% Similarity=0.730 Sum_probs=355.8
Q ss_pred cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
......|++.|+||++.|+++.+|+ ||+||+|++.|+||||++|||+++|.+.++|+|.+|+.+.+|...||++|..+
T Consensus 61 ~~gvv~f~LsdiGEGI~Ev~vkeWf--VKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~ 138 (474)
T KOG0558|consen 61 NSGVVQFKLSDIGEGIAEVTVKEWF--VKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDL 138 (474)
T ss_pred ccceEEEEhhhccccceeeeeeeeh--hhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeee
Confidence 4458999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eecCccccccccccccccCCC--CCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCC
Q psy6394 524 EVEDEGVAAEEADSLDRKAAP--GVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNP 601 (1045)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~ 601 (1045)
+.++.....+...+.|+.+.. ..++.+..+.+++|++||||.|+||||+.|+|||++|||+|+||++|+.+.......
T Consensus 139 eve~~~ds~e~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~ 218 (474)
T KOG0558|consen 139 EVEDSQDSPEDSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTD 218 (474)
T ss_pred eeccCcCCcccCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccC
Confidence 987655433332222222111 122334456789999999999999999999999999999999999999765332221
Q ss_pred CccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCccc-ccCCccee
Q psy6394 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTA-HVREASNV 680 (1045)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~ 680 (1045)
+.+.. .+..+.++ |...+ ..-...+.
T Consensus 219 ~~~~~-------------------------------------------------~a~~~~~~----ps~~a~~~~~~Dkt 245 (474)
T KOG0558|consen 219 PSPSE-------------------------------------------------HAVIPGPS----PSTKASSNLEADKT 245 (474)
T ss_pred CCCce-------------------------------------------------eecCCCCC----CcccccCcccccce
Confidence 11110 00000011 10000 11124678
Q ss_pred eecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCC
Q psy6394 681 IPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPT 760 (1045)
Q Consensus 681 ~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~ 760 (1045)
+|+.+.+|+|.+.|+++..||||.+.+|||++.|+++|++++....+++ +|+|||+|++||++.||.++|.+|+.+|.+
T Consensus 246 ~plrGf~rAMvKtMt~alkiPHF~y~dEIn~~sLvklr~elk~~a~e~~-IKltfmPf~iKaaSlaL~kyP~vNss~d~~ 324 (474)
T KOG0558|consen 246 VPLRGFSRAMVKTMTEALKIPHFGYVDEINCDSLVKLRQELKENAKERG-IKLTFMPFFIKAASLALLKYPIVNSSFDEE 324 (474)
T ss_pred eechhHHHHHHHHHHHHhcCCccccccccChHHHHHHHHHHhhhhhhcC-ceeeehHHHHHHHHHHHhhCccccchhhhh
Confidence 9999999999999999999999999999999999999999999888888 999999999999999999999999999988
Q ss_pred CceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccc
Q psy6394 761 QENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPI 840 (1045)
Q Consensus 761 ~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpi 840 (1045)
...|+++.++|||+|++|+.||+||+|+|++.+++.||+++|++|.++.+.|+|+++|+.|||||+||+|.+|+++..|+
T Consensus 325 ~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~ 404 (474)
T KOG0558|consen 325 SENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPV 404 (474)
T ss_pred hhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 841 IVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 841 i~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|++||+||.|+|+|++.|.||..|++.+..+|+++|+.|||||||+.+|||.+.||.| +|||..++
T Consensus 405 i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~Y---lE~Pa~ml 470 (474)
T KOG0558|consen 405 IMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEY---LENPALML 470 (474)
T ss_pred cccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHH---hhCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999 99998764
No 10
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.5e-76 Score=681.88 Aligned_cols=395 Identities=33% Similarity=0.512 Sum_probs=341.5
Q ss_pred eeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 446 ~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
+.++|+||+|||+|+||+|++|+ ||+||.|++||+|++|||||+++||+||++|+|.+|++++||.|++|++|++|+.
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~--~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~ 78 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEE 78 (404)
T ss_pred CCceEecCCCCCccceEEEEEEe--cCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEec
Confidence 35789999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred cCccc-cccccccccccCCCC-----CCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCC
Q psy6394 526 EDEGV-AAEEADSLDRKAAPG-----VSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDET 599 (1045)
Q Consensus 526 ~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~ 599 (1045)
+++.. +.++..+.+..+.+. ..........++|++|++|+|+|||+.++.|||++|||+++|++.++......
T Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~- 157 (404)
T COG0508 79 EGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAA- 157 (404)
T ss_pred CCCcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhccccccc-
Confidence 76542 111110111111111 01111155789999999999999999999999999999999999987654110
Q ss_pred CCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcce
Q psy6394 600 NPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASN 679 (1045)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 679 (1045)
. +.+.. .. +.+. ......+
T Consensus 158 ~-~~~~~------------------------------------------------------~~---~~~~---~~~~~~~ 176 (404)
T COG0508 158 A-AAPAP------------------------------------------------------AA---AAPA---SAAGEEE 176 (404)
T ss_pred c-ccccc------------------------------------------------------cc---CCcc---cccCCce
Confidence 0 00000 00 0000 1234678
Q ss_pred eeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEc
Q psy6394 680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID 758 (1045)
Q Consensus 680 ~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~ 758 (1045)
++||+++||.|+++|.+| .++||+|.+.++|++.++++|++++..+.+.+ .|+|+++|++||++.||++||.+|++++
T Consensus 177 ~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~g-~klt~~~f~~kA~~~Alk~~P~~Na~~~ 255 (404)
T COG0508 177 RVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKKG-VKLTFLSFLVKAVVKALKKFPEVNASID 255 (404)
T ss_pred eeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhcccC-ccccHHHHHHHHHHHHHHhCCccceeec
Confidence 899999999999999999 89999999999999999999999998776555 9999999999999999999999999888
Q ss_pred CCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeec
Q psy6394 759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ 838 (1045)
Q Consensus 759 ~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~t 838 (1045)
++...+++++++|||+||++++||++||||++|++++.+|++++.+|..++|+|||+++||+||||||||+|+||..+|+
T Consensus 256 ~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~t 335 (404)
T COG0508 256 GDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFT 335 (404)
T ss_pred cccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceec
Confidence 53228999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 839 PIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 839 pii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
||||+||+||||+|++.++|+++ ++++++|++|+++++||||+|||+++++||..++++ +|+|..++
T Consensus 336 piin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~---le~p~~ll 402 (404)
T COG0508 336 PIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKEL---LEDPERLL 402 (404)
T ss_pred ccccChhHheeeccccccCceEe-cCceeeEeeEeecccccccccccHHHHHHHHHHHHH---hcChhhhh
Confidence 99999999999999999999995 459999999999999999999999999999999999 99998764
No 11
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=2.7e-76 Score=686.43 Aligned_cols=394 Identities=27% Similarity=0.411 Sum_probs=329.9
Q ss_pred EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCE-EecCCceEEEeecCc
Q psy6394 450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV-ALVGKPLLDIEVEDE 528 (1045)
Q Consensus 450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~-v~vg~~l~~i~~~~~ 528 (1045)
++||++|++|+||+|.+|+ |++||.|++||+||+|||||++++|+||.+|+|.++++++|+. +++|++|++|+..++
T Consensus 2 i~~P~lg~~~~eg~i~~w~--v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~ 79 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKE 79 (435)
T ss_pred cccCCCCCCcceEEEEEEE--eCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCC
Confidence 6799999999999999999 9999999999999999999999999999999999999999999 999999999965332
Q ss_pred ccc-c-----------cccc-----cccc---cC--CC--CC-CC----C-----CCCCCCCCccccccCCCCCCCcCcc
Q psy6394 529 GVA-A-----------EEAD-----SLDR---KA--AP--GV-SE----V-----NTPDTSDQPNETLHKDPNKIDTKEL 574 (1045)
Q Consensus 529 ~~~-~-----------~~~~-----~~~~---~~--~~--~~-~~----~-----~~~~~~asP~vr~la~e~gidls~v 574 (1045)
..+ . ++.. +.+. .+ .+ .. .+ . ....++++|++|++|+|+||||+.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v 159 (435)
T TIGR01349 80 DVADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAV 159 (435)
T ss_pred ccccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHC
Confidence 211 0 0000 0000 00 00 00 00 0 0113568999999999999999999
Q ss_pred ccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchh
Q psy6394 575 RGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKED 654 (1045)
Q Consensus 575 ~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~ 654 (1045)
+|||++|||+++||++|+..... .+ +.+++..
T Consensus 160 ~gtG~~GrI~~~DV~~~~~~~~~-~~-~~~~~~~---------------------------------------------- 191 (435)
T TIGR01349 160 AGSGPNGRIVKKDIESFVPQSPA-SA-NFQAAAT---------------------------------------------- 191 (435)
T ss_pred CCCCCCCceeHHHHHHHHhcccc-cC-CCccccc----------------------------------------------
Confidence 99999999999999999753110 00 0000000
Q ss_pred hhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCccc
Q psy6394 655 IITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKL 733 (1045)
Q Consensus 655 ~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~kl 733 (1045)
.+ ..... ..+. .....+.+||++|||.|+++|.+| +++||+|++.++|+++|+++|+++++...+ + .|+
T Consensus 192 --~~-~~~~~-~~~~----~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~-~-~kl 261 (435)
T TIGR01349 192 --TP-ATKKA-AAPV----STGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKELNAMASE-V-YKL 261 (435)
T ss_pred --cc-ccccc-CCCc----cCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHHHHHHHhhhhc-C-Ccc
Confidence 00 00000 0000 011245689999999999999999 899999999999999999999999976544 5 899
Q ss_pred ChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCC
Q psy6394 734 TYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGK 813 (1045)
Q Consensus 734 T~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k 813 (1045)
|+++||+||+++||++||.||++|++ ++|++++++||||||++++||+||||||+|++++.+|+++++++.+++|+|+
T Consensus 262 t~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~ 339 (435)
T TIGR01349 262 SVNDFIIKASALALREVPEANSSWTD--NFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNK 339 (435)
T ss_pred cHHHHHHHHHHHHHHhCcHhheEEeC--CeEEEeCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999985 6799999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCc---eeEEEeeeEEEeccceeecchhhhh
Q psy6394 814 VLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMR---IVAKCILNVTWAADHRVVDGATVAR 890 (1045)
Q Consensus 814 l~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~---i~~~~~m~lslt~DhRviDGa~aa~ 890 (1045)
|+++||+||||||||+|+||+.+|+|||||||+||||+|++.++|+++ +|+ +++|++|+++|+||||||||+++|+
T Consensus 340 L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~-~~~~~~i~~~~~m~lsls~DHRviDGa~aa~ 418 (435)
T TIGR01349 340 LKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVD-NDEEKGFAVASIMSVTLSCDHRVIDGAVGAE 418 (435)
T ss_pred CChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEe-CCccceeEEeeeEEEeEeecchhhCcHHHHH
Confidence 999999999999999999999999999999999999999999999984 455 9999999999999999999999999
Q ss_pred hhhhhhhcccccccCCcce
Q psy6394 891 AATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 891 fl~~~~~~~~ile~p~v~I 909 (1045)
||+.|+++ ||+|..++
T Consensus 419 Fl~~lk~~---lE~p~~ll 434 (435)
T TIGR01349 419 FLKSFKKY---LENPIEML 434 (435)
T ss_pred HHHHHHHH---HhCHHhhh
Confidence 99999999 99998653
No 12
>KOG0557|consensus
Probab=100.00 E-value=7.4e-77 Score=661.63 Aligned_cols=402 Identities=27% Similarity=0.393 Sum_probs=337.1
Q ss_pred cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC-CEEecCCceEE
Q psy6394 444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG-DVALVGKPLLD 522 (1045)
Q Consensus 444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G-~~v~vg~~l~~ 522 (1045)
.+...+|.||.|+.+|+||.|++|. +++||.+++||+||||||||++|+++++++|+|.||+++|| ..|+||.+|++
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~--kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iai 112 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWK--KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAI 112 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEe--eccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEE
Confidence 5778999999999999999999999 99999999999999999999999999999999999999999 78999999999
Q ss_pred EeecCccccccc--c-----c-------cccccC------CCCC-------CCCC---CCCCCCCccccccCCCCCCCcC
Q psy6394 523 IEVEDEGVAAEE--A-----D-------SLDRKA------APGV-------SEVN---TPDTSDQPNETLHKDPNKIDTK 572 (1045)
Q Consensus 523 i~~~~~~~~~~~--~-----~-------~~~~~~------~~~~-------~~~~---~~~~~asP~vr~la~e~gidls 572 (1045)
|.+.+++.++.. . . ++++.+ ++.+ ++.. ..++.++|.+|+||.++|+|++
T Consensus 113 ive~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls 192 (470)
T KOG0557|consen 113 IVEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELS 192 (470)
T ss_pred EecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccc
Confidence 977655533210 0 0 000000 0100 1111 2367899999999999999999
Q ss_pred ccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccc
Q psy6394 573 ELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKK 652 (1045)
Q Consensus 573 ~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~ 652 (1045)
.++||||+|||+|.||++|+.....+.+. .+.++
T Consensus 193 ~i~gtGP~Gri~k~Di~~~v~~~~~k~~~-~~~~~--------------------------------------------- 226 (470)
T KOG0557|consen 193 SIPGTGPHGRILKGDIEKHVGSGKKKSAK-APKAS--------------------------------------------- 226 (470)
T ss_pred cCcCcCCCceeehhhHHHhhccccccccc-CCCcc---------------------------------------------
Confidence 99999999999999999998764432211 11000
Q ss_pred hhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCc
Q psy6394 653 EDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRL 731 (1045)
Q Consensus 653 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~ 731 (1045)
.++ .++++.....+.++.+|++.||+.|+++|.+| ++|||+|+..+++++.|+.+|+.++ +++.+ .
T Consensus 227 ------~~~----~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~~~~~-~ 293 (470)
T KOG0557|consen 227 ------APP----PAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLALREKLN--FEKSI-K 293 (470)
T ss_pred ------CCC----cCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHHHHHHhh--hcccC-c
Confidence 000 00100111123478999999999999999999 9999999999999999999999999 34445 8
Q ss_pred ccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhcccc
Q psy6394 732 KLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE 811 (1045)
Q Consensus 732 klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~ 811 (1045)
++++++|++||++.||+++|+.|++|.++ +.
T Consensus 294 ~vsvndliiKAaa~al~~vPevNs~w~~~-~~------------------------------------------------ 324 (470)
T KOG0557|consen 294 KVSLNDLIAKAAALALAKVPEVNSSWMDE-LV------------------------------------------------ 324 (470)
T ss_pred ccchhHHHHHHHHHHHhcCCcccceecCC-cc------------------------------------------------
Confidence 99999999999999999999999999852 10
Q ss_pred CCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhh
Q psy6394 812 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA 891 (1045)
Q Consensus 812 ~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~f 891 (1045)
T Consensus 325 -------------------------------------------------------------------------------- 324 (470)
T KOG0557|consen 325 -------------------------------------------------------------------------------- 324 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCC
Q psy6394 892 ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG 971 (1045)
Q Consensus 892 l~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~ 971 (1045)
|.++..+++.+||+|++|||+|+|+|++.++|.+|++++++|+.+||+|+|.|+||+|||||||||||||+
T Consensus 325 ---------i~~~~~VdisvAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V 395 (470)
T KOG0557|consen 325 ---------IRQLSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGV 395 (470)
T ss_pred ---------ccccCcCChhheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCc
Confidence 13345688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCCceeEEEecceeEEeEE--ecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 972 TLVQPIIVPRQVCIVAFGKIQLLPRF--DAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 972 ~~~~~iin~pq~ail~vG~i~~~pv~--~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
+.|++||||||+|||++|+..+..|. +..+++....+|++|||+|||+|||+.|++||..||++||||..||+
T Consensus 396 ~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 396 DMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred cccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 99999999999999999999987773 44457889999999999999999999999999999999999999985
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=1.8e-74 Score=663.35 Aligned_cols=370 Identities=25% Similarity=0.423 Sum_probs=295.2
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
++|+||+||++|+||+|++|+ |++||.|++||+||+|||||+.+||+||++|+|.+|++++||.|++|++|++|+..+
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~--v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~ 169 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFL--KKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSE 169 (463)
T ss_pred eEEecCCCCCCcceEEEEEEE--eCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCC
Confidence 799999999999999999999 999999999999999999999999999999999999999999999999999997543
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccc
Q psy6394 528 EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHV 607 (1045)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~ 607 (1045)
+.. +++... + ..+. .+.+.+ ..+..|++ +++++++.+.- + ... .. .+..+ +
T Consensus 170 ~~~-~~~~~~-~--~~~~-~~~~~~---~~~~~~~~--~~~v~asp~~r---~-----------~~~-~~--~~~~~-~- 220 (463)
T PLN02226 170 DAA-SQVTPS-Q--KIPE-TTDPKP---SPPAEDKQ--KPKVESAPVAE---K-----------PKA-PS--SPPPP-K- 220 (463)
T ss_pred ccc-cccCcc-C--CCCC-CCCCCC---CCcccccc--ccCCCcchhhc---c-----------ccC-CC--CCCCC-c-
Confidence 211 100000 0 0000 000000 00111111 33333333210 0 000 00 00000 0
Q ss_pred cccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchh
Q psy6394 608 REASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYV 687 (1045)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~r 687 (1045)
.+. ..+.. . .....+.+||++||
T Consensus 221 -----------------------------------------------------~~~--~~~~~-~-~~~~~~~ipls~~R 243 (463)
T PLN02226 221 -----------------------------------------------------QSA--KEPQL-P-PKERERRVPMTRLR 243 (463)
T ss_pred -----------------------------------------------------ccc--cCccc-c-cCCCceeeeChHHH
Confidence 000 00000 0 00113568999999
Q ss_pred hHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEE
Q psy6394 688 KGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILV 766 (1045)
Q Consensus 688 k~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~ 766 (1045)
|.||++|.+| +++||+|++.|+|+++|+++|+++++.+.+..+.|+|+++||+||+++||++||.+|++|++ +.|
T Consensus 244 k~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~--~~i-- 319 (463)
T PLN02226 244 KRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDG--DDI-- 319 (463)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcC--CEE--
Confidence 9999999999 89999999999999999999999998766553389999999999999999999999999973 111
Q ss_pred cCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccce
Q psy6394 767 NPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846 (1045)
Q Consensus 767 ~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ 846 (1045)
T Consensus 320 -------------------------------------------------------------------------------- 319 (463)
T PLN02226 320 -------------------------------------------------------------------------------- 319 (463)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecc
Q psy6394 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKS 926 (1045)
Q Consensus 847 ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~ 926 (1045)
+.++++||||||++++||+||||||
T Consensus 320 -------------------------------------------------------~~~~~vnIGvAV~t~~GLvVPVIr~ 344 (463)
T PLN02226 320 -------------------------------------------------------IYRDYVDISIAVGTSKGLVVPVIRG 344 (463)
T ss_pred -------------------------------------------------------EEeCcccEEEEEECCCCEEeccCCC
Confidence 2334588999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEE
Q psy6394 927 VNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAK 1006 (1045)
Q Consensus 927 a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~ 1006 (1045)
||+|+|.||++++++|++++|+|+|+++||+||||||||+||||+++|+|||||||+||||+|+++++||+.+| ++++|
T Consensus 345 ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-~i~~r 423 (463)
T PLN02226 345 ADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-SVVPR 423 (463)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-EEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 89999
Q ss_pred EEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 1007 CILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 1007 ~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
++|+||||||||+|||++||+||++|+++||||..||++
T Consensus 424 ~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~ 462 (463)
T PLN02226 424 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLD 462 (463)
T ss_pred eEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999999999999999999999999999998864
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=3.1e-74 Score=658.29 Aligned_cols=405 Identities=26% Similarity=0.421 Sum_probs=318.1
Q ss_pred EecceeeecccccccccCCCCCCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEE
Q psy6394 407 SIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEV 486 (1045)
Q Consensus 407 ~l~g~r~~m~k~Mt~S~~~~~s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~v 486 (1045)
||-...|.||++++--+ .++.-+.|+|..-...++|+||+||++|+||+|++|+ |++||.|++||+|++|
T Consensus 12 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~--v~~Gd~V~~Gd~L~~v 81 (418)
T PTZ00144 12 PLLSSVKGMFRRFSLRK--------LQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWK--KKVGDYVKEDEVICII 81 (418)
T ss_pred cccccchhHHHHHhhhc--------cchhhhhhcccccccceEEecCCCCCCcceEEEEEEE--eCCCCEeCCCCEEEEE
Confidence 34445677887766533 1122234555555567899999999999999999999 9999999999999999
Q ss_pred eccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccccccccccCCCCCCCCCCCCCCCCccccccCCC
Q psy6394 487 ESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP 566 (1045)
Q Consensus 487 etdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e 566 (1045)
||||++++|+||.+|+|.++++++|+.|++|++|++|+..++... ++..++ ....+... .+.......|.+++++++
T Consensus 82 EtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~p~~~~~a~~ 158 (418)
T PTZ00144 82 ETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPA-AAPAAA-AAAKAEKT-TPEKPKAAAPTPEPPAAS 158 (418)
T ss_pred EEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCcccc-cccccc-CCCCCccC-CCCCCCCCCCcccccccc
Confidence 999999999999999999999999999999999999975443211 100000 00000000 000000123556665555
Q ss_pred CCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccc
Q psy6394 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQ 646 (1045)
Q Consensus 567 ~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~ 646 (1045)
+++++..+.. ....+. ++
T Consensus 159 ~~~a~p~vr~------------------~~~~~~--~~------------------------------------------ 176 (418)
T PTZ00144 159 KPTPPAAAKP------------------PEPAPA--AK------------------------------------------ 176 (418)
T ss_pred ccCCchhhhc------------------cccCCC--CC------------------------------------------
Confidence 5554444410 000000 00
Q ss_pred cccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHH
Q psy6394 647 LRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALY 725 (1045)
Q Consensus 647 ~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~ 725 (1045)
..+ .+... .....+.+||++|||.||++|.+| +++||+|++.|+|+++|+++|+++++.+
T Consensus 177 -------------~~~----~~~~~--~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~ 237 (418)
T PTZ00144 177 -------------PPP----TPVAR--ADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDF 237 (418)
T ss_pred -------------CCC----CCccc--cCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhh
Confidence 000 00000 000134579999999999999999 8999999999999999999999999766
Q ss_pred HhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHH
Q psy6394 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRI 805 (1045)
Q Consensus 726 ~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l 805 (1045)
.+..+.|+|+++||+||+++||++||.+|++|++ +++
T Consensus 238 ~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~--~~i----------------------------------------- 274 (418)
T PTZ00144 238 QKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDG--DEI----------------------------------------- 274 (418)
T ss_pred hhhcCCcccHHHHHHHHHHHHHHhChHhheEEcC--CEE-----------------------------------------
Confidence 6553389999999999999999999999999973 111
Q ss_pred HhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecc
Q psy6394 806 QGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDG 885 (1045)
Q Consensus 806 ~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDG 885 (1045)
T Consensus 275 -------------------------------------------------------------------------------- 274 (418)
T PTZ00144 275 -------------------------------------------------------------------------------- 274 (418)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeec
Q psy6394 886 ATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSN 965 (1045)
Q Consensus 886 a~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSN 965 (1045)
+.++++||||||++++||+||||||||+|+|.+|++++++|++++|+|+|+++||+||||||||
T Consensus 275 ----------------~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISN 338 (418)
T PTZ00144 275 ----------------VYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISN 338 (418)
T ss_pred ----------------EEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEEC
Confidence 2234578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 966 VGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 966 lG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
+||+|+++|+|||||||+||||+|+++++||+.+| ++++|++|+||||||||+|||++||+||++|+++||||+.||++
T Consensus 339 lG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~ 417 (418)
T PTZ00144 339 GGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-EIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLD 417 (418)
T ss_pred CCCCCcceeeeeecCCceEEEecccceeEeEEECC-EEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99999999999999999999999999999999876 89999999999999999999999999999999999999998864
No 15
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-69 Score=609.58 Aligned_cols=295 Identities=24% Similarity=0.349 Sum_probs=256.2
Q ss_pred CCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCC
Q psy6394 556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPS 635 (1045)
Q Consensus 556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 635 (1045)
+||++|++|+|+||||+.|+|||++|||+++||++|+......+.+.++++ +
T Consensus 51 asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~---------------------------~- 102 (347)
T PRK14843 51 ISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQ---------------------------I- 102 (347)
T ss_pred CCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCC---------------------------C-
Confidence 599999999999999999999999999999999999743211000000000 0
Q ss_pred ccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHH
Q psy6394 636 LRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQL 714 (1045)
Q Consensus 636 ~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l 714 (1045)
. .... .|...+ ..+..+.+||+++||.||++|.+| +++||+|++.|+|+++|
T Consensus 103 ---------------------~--~~~~---~~~~~~-~~~~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l 155 (347)
T PRK14843 103 ---------------------E--KVEE---VPDNVT-PYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEM 155 (347)
T ss_pred ---------------------c--cccC---CCcccc-cCCcceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHH
Confidence 0 0000 000000 012245689999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccccc
Q psy6394 715 RDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLC 794 (1045)
Q Consensus 715 ~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~s 794 (1045)
+++|+++++.+.+..+.|+|+++||+||++.||++||.||++|+++++.+++++++||||||++++||+||||||+|+++
T Consensus 156 ~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~s 235 (347)
T PRK14843 156 LALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMS 235 (347)
T ss_pred HHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCC
Confidence 99999998765544338999999999999999999999999998766789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeE
Q psy6394 795 LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNV 874 (1045)
Q Consensus 795 l~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~l 874 (1045)
+.+|++++++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|+++ +|++++|++|++
T Consensus 236 l~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~l 314 (347)
T PRK14843 236 LSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVV-NGEIVIRPIMSL 314 (347)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEE-CCeEEEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 789999999999
Q ss_pred EEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 875 TWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 875 slt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
+|+||||||||+++|+||+.++++ +|+|..++
T Consensus 315 sls~DHRviDGa~aa~Fl~~lk~~---lE~p~~ll 346 (347)
T PRK14843 315 GLTIDHRVVDGMAGAKFMKDLKEL---IETPISML 346 (347)
T ss_pred EEecchhhhCcHHHHHHHHHHHHH---hcCHHHhh
Confidence 999999999999999999999999 99998653
No 16
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=8.1e-67 Score=608.51 Aligned_cols=389 Identities=35% Similarity=0.532 Sum_probs=330.1
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..+++||++|++|++|+|.+|+ |++||.|++||+|++|||||+.++++||.+|+|.++++++|+.|.+|++|++|...
T Consensus 2 ~~~~~~P~lg~~~~~g~i~~w~--v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~ 79 (411)
T PRK11856 2 MFEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79 (411)
T ss_pred CeeEecCCCCCCCceEEEEEEE--eCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence 3589999999999999999999 99999999999999999999999999999999999999999999999999999865
Q ss_pred Cc-cccccc--cc--c--cccc-CCC--C-CCC------CCC-CCCCCCccccccCCCCCCCcCccccCCCCCccchHhH
Q psy6394 527 DE-GVAAEE--AD--S--LDRK-AAP--G-VSE------VNT-PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDI 588 (1045)
Q Consensus 527 ~~-~~~~~~--~~--~--~~~~-~~~--~-~~~------~~~-~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV 588 (1045)
++ ..+..+ .. + .+.. ..+ . ..+ ... ....++|++|++|+++||||+.|+|||++|||+++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv 159 (411)
T PRK11856 80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDV 159 (411)
T ss_pred CCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHH
Confidence 43 211110 00 0 0000 000 0 000 001 1236899999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCCC
Q psy6394 589 ITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNP 668 (1045)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p 668 (1045)
++|+........ .+++ + +.+ .+
T Consensus 160 ~~~~~~~~~~~~--~~~~---------------------------~--------------------------~~~---~~ 181 (411)
T PRK11856 160 EAAAAAAAPAAA--AAAA---------------------------A--------------------------AAA---PP 181 (411)
T ss_pred HHHHhcccccCC--CCCC---------------------------C--------------------------CCC---CC
Confidence 999753211000 0000 0 000 00
Q ss_pred CcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHH
Q psy6394 669 AHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCM 747 (1045)
Q Consensus 669 ~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL 747 (1045)
. ......+.+||+++||.||++|.+| .++||++++.++|+++|+++|+++++ .+ .++|+++|++||+++||
T Consensus 182 ~---~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~----~~-~~ls~~~~~ikav~~Al 253 (411)
T PRK11856 182 A---AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKA----IG-VKLTVTDFLIKAVALAL 253 (411)
T ss_pred c---ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHh----hc-cCccHHHHHHHHHHHHH
Confidence 0 0011246789999999999999999 89999999999999999999999874 23 79999999999999999
Q ss_pred HhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEee
Q psy6394 748 TEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMS 827 (1045)
Q Consensus 748 ~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftIS 827 (1045)
++||.||++|++ +++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+.+|++|||||||
T Consensus 254 ~~~P~~n~~~~~--~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiS 331 (411)
T PRK11856 254 KKFPELNASWDD--DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTIS 331 (411)
T ss_pred HhCcHhheEEeC--CEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEe
Confidence 999999999985 569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCc
Q psy6394 828 NVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDH 907 (1045)
Q Consensus 828 NlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v 907 (1045)
|+|+||..+++|+|||||+|||++|++.++|++. +|+++++++|+++|++|||++||+++++||+.++++ +++|..
T Consensus 332 n~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~---le~p~~ 407 (411)
T PRK11856 332 NLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKEL---LENPAL 407 (411)
T ss_pred CCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHH---HhCHHH
Confidence 9999999999999999999999999999999985 799999999999999999999999999999999999 999987
Q ss_pred ce
Q psy6394 908 NI 909 (1045)
Q Consensus 908 ~I 909 (1045)
++
T Consensus 408 ll 409 (411)
T PRK11856 408 LL 409 (411)
T ss_pred Hh
Confidence 64
No 17
>KOG0559|consensus
Probab=100.00 E-value=1.9e-67 Score=562.65 Aligned_cols=381 Identities=25% Similarity=0.394 Sum_probs=302.8
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..+++.|.++|+++||.|.+|+ +++||.|++++.|++|||||.+++|+||.+|+|.++++++||.|..|+.|+.|...
T Consensus 72 ~vtv~vP~faESiteG~l~~~l--K~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWL--KKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeEEecCCcccccccchHHHHh--hCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCC
Confidence 6789999999999999999999 99999999999999999999999999999999999999999999999999999864
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCcccc
Q psy6394 527 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAH 606 (1045)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~ 606 (1045)
...+... ..+|+++++...+. ..+.|.- + ++ .+-++ .......+++|+.
T Consensus 150 aApa~~~--~~apa~~~pk~~~a----~~a~p~~---~------------s~---~~p~~-------~apv~e~p~~p~~ 198 (457)
T KOG0559|consen 150 AAPAKGG--ASAPAKAEPKTAPA----AAAPPKP---S------------SK---PPPKE-------AAPVAESPPAPSS 198 (457)
T ss_pred CCCcccc--ccCCCccCCCCCCC----CCCCCCc---c------------CC---CCccc-------cCCCCCCCCCCCC
Confidence 2221111 11111111100000 0000000 0 00 00000 0000000000000
Q ss_pred ccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCCCCC-CCcccccCCcceeeecCc
Q psy6394 607 VREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETN-PAHTAHVREASNVIPIRG 685 (1045)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~pls~ 685 (1045)
. .| ...+ .. + ++.+++.. |.....+...+.+++|++
T Consensus 199 ~-------------------------~P-----~~~~--a~----k-------~~v~~~~~~p~~~~~~~R~E~RVkMnR 235 (457)
T KOG0559|consen 199 P-------------------------EP-----VPAS--AK----K-------PSVAQPKPPPSEGATPSRSERRVKMNR 235 (457)
T ss_pred C-------------------------CC-----CCcc--cc----C-------ccccCCCCCcccccCCCcchhhhhhHH
Confidence 0 00 0000 00 0 00000000 111111234578899999
Q ss_pred hhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceE
Q psy6394 686 YVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENI 764 (1045)
Q Consensus 686 ~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i 764 (1045)
||+.||.++.+| .+....|.+.||||++|+++|+++++.+-++.|+|+.||.+|+||++.||++.|.+|+.|++ +.|
T Consensus 236 mR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg--~~i 313 (457)
T KOG0559|consen 236 MRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDG--DDI 313 (457)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecC--Cee
Confidence 999999999999 78899999999999999999999998877766699999999999999999999999999995 689
Q ss_pred EEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccc
Q psy6394 765 LVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG 844 (1045)
Q Consensus 765 ~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~p 844 (1045)
+|++|+||+|||+|+.||+||||||++.+++.+|.++|+.|..+||+|+|+.+||.||||||||-|.||..+.|||||||
T Consensus 314 VYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpP 393 (457)
T KOG0559|consen 314 VYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPP 393 (457)
T ss_pred EEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 845 q~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|+|||||+.|.++|++ .+|++++||||++.|+||||+|||.+|..||+.+|.+ +|||..++
T Consensus 394 QsAILGmHgI~eRPv~-v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~---VEDP~~ml 454 (457)
T KOG0559|consen 394 QSAILGMHGIKERPVV-VGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEA---VEDPRKML 454 (457)
T ss_pred hhhhhhccccccccee-eCCEeeeccceEEEeeccccccccHHHHHHHHHHHHH---hhCHHHHh
Confidence 9999999999999998 6899999999999999999999999999999999999 99998765
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.8e-64 Score=559.35 Aligned_cols=301 Identities=29% Similarity=0.469 Sum_probs=258.2
Q ss_pred CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccC
Q psy6394 554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTI 633 (1045)
Q Consensus 554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1045)
+++||++|++|+|+|||++.|+|||++|||+|+||++|+........+.++.+ .
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~-~------------------------- 55 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAAS-V------------------------- 55 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccc-c-------------------------
Confidence 46899999999999999999999999999999999999753211111000000 0
Q ss_pred CCccccccccccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccch
Q psy6394 634 PSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTT 712 (1045)
Q Consensus 634 p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t 712 (1045)
+.. ......+ .|.+. .+....+.+||+++|+.|+++|.+| +++||+|++.|+|++
T Consensus 56 ~~~--------------------~~~~~~~---~~~~~-~~~~~~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t 111 (306)
T PRK11857 56 SSA--------------------QQAAKTA---APAAA-PPKLEGKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMT 111 (306)
T ss_pred ccc--------------------ccccccc---CCccc-ccCCCceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEch
Confidence 000 0000000 00000 0111245679999999999999999 799999999999999
Q ss_pred HHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeeccccc
Q psy6394 713 QLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNK 792 (1045)
Q Consensus 713 ~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~ 792 (1045)
+|+++|+++++.+.+..+.|+|+++||+||+++||++||.+|++|+++++.+++++++||||||++++||+||||+|+|+
T Consensus 112 ~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~ 191 (306)
T PRK11857 112 KLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQK 191 (306)
T ss_pred HHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCc
Confidence 99999999997655543489999999999999999999999999987667899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEee
Q psy6394 793 LCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL 872 (1045)
Q Consensus 793 ~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m 872 (1045)
+++.+|++++++|.+++|+|+|+++||+||||||||+|+||+.+++|||||||+||||+|+++++|++ .||++++|++|
T Consensus 192 ~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv-~~g~i~~r~~m 270 (306)
T PRK11857 192 LSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIV-KNGQIVAGKVM 270 (306)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEE-ECCEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 57999999999
Q ss_pred eEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 873 NVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 873 ~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
+++|+||||||||+++|+||+.++++ +|+|..+
T Consensus 271 ~lslt~DHRviDGa~aa~Fl~~lk~~---LE~p~~l 303 (306)
T PRK11857 271 HLTVAADHRWIDGATIGRFASRVKEL---LEKPEIL 303 (306)
T ss_pred EEeEecchhhhCcHHHHHHHHHHHHH---hcCHHhh
Confidence 99999999999999999999999999 9999864
No 19
>KOG0557|consensus
Probab=100.00 E-value=2.7e-59 Score=521.22 Aligned_cols=422 Identities=27% Similarity=0.399 Sum_probs=289.8
Q ss_pred ccccccceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCC-CeecCC
Q psy6394 179 HTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG-DVALVG 257 (1045)
Q Consensus 179 ~~s~~~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g-~~v~vG 257 (1045)
|.+..+..+..|.||+|+++|+||+|++|+ +||||.+++||+|||||||||+|+++++++|+++||++++| ..|+||
T Consensus 30 ~~a~~~p~h~~i~MPALSPTMeeGnIvsW~--kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVG 107 (470)
T KOG0557|consen 30 HSASKLPAHKTFSMPALSPTMEEGNIVSWK--KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVG 107 (470)
T ss_pred cccccCCcceEeecCCCCccccCCceeeEe--eccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCC
Confidence 333337889999999999999999999999 99999999999999999999999999999999999999999 559999
Q ss_pred CeEEEEEecCcccccccccccc---ccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccC
Q psy6394 258 KPLLDIEVEDEGVAAEEADSLD---RKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLN 334 (1045)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1045)
++||+|.+++++.++....... ...++..+ +.+ ++|.....+ .+. ..+++. .+
T Consensus 108 k~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~----~~~-app~~~~~~--~Ps----~~~~~~-------------~~ 163 (470)
T KOG0557|consen 108 KPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAA----PPP-APPKVAKPE--APS----APSKPS-------------TS 163 (470)
T ss_pred CceEEEecccccHHHhhccccccccccCCcccC----CCC-CCCcccccC--CCC----CCcccc-------------cc
Confidence 9999998777766544322111 00011000 000 000000000 000 000000 00
Q ss_pred ccccccccccccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCccccccccc----cc-----c--ccc
Q psy6394 335 QPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTA----HV-----R--EAS 403 (1045)
Q Consensus 335 ~~~~~~~~~~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~~----~~-----~--~~~ 403 (1045)
++.. ...+.|+.++|.+|+||.|+|+|++.|+||||+|||+|+||++|++.....+...+++ .+ . ..-
T Consensus 164 ~p~~-~~~~~r~~asP~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~ 242 (470)
T KOG0557|consen 164 QPVK-AKNGGRVFASPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGY 242 (470)
T ss_pred ccCC-cCCCCceecChHHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcc
Confidence 0000 1125689999999999999999999999999999999999999999533322211110 00 0 113
Q ss_pred eeEEecceeeecccccccccCCCCCCCCcccccccccccccceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeE
Q psy6394 404 NVISIRGYVKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVV 483 (1045)
Q Consensus 404 ~~~~l~g~r~~m~k~Mt~S~~~~~s~~~~~~~~~~~~s~~~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l 483 (1045)
+.+|+.-+|+.+.|+|.+|+.. +|. .+ + .
T Consensus 243 ~diP~s~mr~viakrl~eSk~~--------------------------IPh------------~y--v------t----- 271 (470)
T KOG0557|consen 243 EDIPVSNMRRVIAKRLLESKQT--------------------------IPH------------YY--V------T----- 271 (470)
T ss_pred cccccchhhhhhhhhhhhhhcC--------------------------CCe------------EE--E------e-----
Confidence 4677777777777777776411 221 11 0 0
Q ss_pred eEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCccccccccccccccCCCCCCCCCCCCCCCCcccccc
Q psy6394 484 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLH 563 (1045)
Q Consensus 484 ~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~l 563 (1045)
..++.|| -.+.|+.
T Consensus 272 ~~~~~d~------------------------------------------------------------------ll~~r~~ 285 (470)
T KOG0557|consen 272 VDVNLDK------------------------------------------------------------------LLALREK 285 (470)
T ss_pred eeeehHH------------------------------------------------------------------HHHHHHH
Confidence 0000000 0011110
Q ss_pred CCCCCCCcCccccCCCCCccchHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCcccccccc
Q psy6394 564 KDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVD 643 (1045)
Q Consensus 564 a~e~gidls~v~gTG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d 643 (1045)
.. .... .-+|+-.|+..
T Consensus 286 ln--------~~~~--~~~vsvndlii----------------------------------------------------- 302 (470)
T KOG0557|consen 286 LN--------FEKS--IKKVSLNDLIA----------------------------------------------------- 302 (470)
T ss_pred hh--------hccc--CcccchhHHHH-----------------------------------------------------
Confidence 00 0000 01222223221
Q ss_pred ccccccccchhhhcccCCCCCCCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHH
Q psy6394 644 TTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVS 722 (1045)
Q Consensus 644 ~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~ 722 (1045)
++..-. ..+|.+...
T Consensus 303 ------------------------------------------------KAaa~al~~vPevNs~---------------- 318 (470)
T KOG0557|consen 303 ------------------------------------------------KAAALALAKVPEVNSS---------------- 318 (470)
T ss_pred ------------------------------------------------HHHHHHHhcCCcccce----------------
Confidence 111100 111111100
Q ss_pred HHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHH
Q psy6394 723 ALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITREL 802 (1045)
Q Consensus 723 ~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l 802 (1045)
+++ . -.+.. +++|||++||++++||++|+|+|++.+.+.+|.+++
T Consensus 319 ------------w~~--------------~--~~i~~-------~~~VdisvAVat~~GLitPii~na~~kgl~~is~~v 363 (470)
T KOG0557|consen 319 ------------WMD--------------E--LVIRQ-------LSSVDISVAVATPNGLITPIIQNADAKGLSTISSKV 363 (470)
T ss_pred ------------ecC--------------C--ccccc-------cCcCChhheeeccCcccchhhhhcccccHHHHHHHH
Confidence 000 0 00000 256899999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeE--eccCCceeEEEeeeEEEeccc
Q psy6394 803 LRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR--FDAEMRIVAKCILNVTWAADH 880 (1045)
Q Consensus 803 ~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~--~~~~g~i~~~~~m~lslt~Dh 880 (1045)
.+|+.++|.+||.+++++|||||||||||||++.|++||||||.|||++|+.+...+ .|.++++.....|++++++||
T Consensus 364 kel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~Dh 443 (470)
T KOG0557|consen 364 KELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADH 443 (470)
T ss_pred HHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCc
Confidence 999999999999999999999999999999999999999999999999999888777 466778999999999999999
Q ss_pred eeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 881 RVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 881 RviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|++||+.+|+||+.|+.+ +|||..++
T Consensus 444 Rvvdga~aa~Fl~~fk~~---~EnP~~~l 469 (470)
T KOG0557|consen 444 RVVDGAVAARFLDEFKEN---LENPEFLL 469 (470)
T ss_pred ceecHHHHHHHHHHHHHH---hhCHHhhh
Confidence 999999999999999999 99997654
No 20
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=1e-54 Score=500.17 Aligned_cols=138 Identities=28% Similarity=0.440 Sum_probs=133.9
Q ss_pred CCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccccee
Q psy6394 768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC 847 (1045)
Q Consensus 768 ~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~a 847 (1045)
+++||||||++++||+||||||+|++++.+|++++++|.+++|+|+|+++||+||||||||+|+||+++|+|||||||+|
T Consensus 323 ~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvA 402 (463)
T PLN02226 323 DYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSA 402 (463)
T ss_pred CcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 848 IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 848 ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|||+|+++++|++. ||++++|++|+++|+||||||||+++|+||+.++++ ||+|..++
T Consensus 403 ILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~---LE~P~~LL 460 (463)
T PLN02226 403 ILGMHSIVSRPMVV-GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDV---VEDPQRLL 460 (463)
T ss_pred EEEcccceEEEEEE-CCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHH---hcCHHHHh
Confidence 99999999999984 799999999999999999999999999999999999 99998653
No 21
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=5.3e-54 Score=491.86 Aligned_cols=138 Identities=30% Similarity=0.452 Sum_probs=133.8
Q ss_pred CCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeeccccccccee
Q psy6394 768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC 847 (1045)
Q Consensus 768 ~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~a 847 (1045)
+++||||||++++||+||||+++|++++.+|++++++|++++|+|+|+++||+||||||||+|+||+++|||||||||+|
T Consensus 278 ~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~a 357 (418)
T PTZ00144 278 NYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSA 357 (418)
T ss_pred cCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 848 IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 848 ilavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
|||+|+++++|+++ +|++++|++|+++|+||||||||++||+||+.++++ ||+|..++
T Consensus 358 ILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~---LE~P~~ll 415 (418)
T PTZ00144 358 ILGMHAIKKRPVVV-GNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDL---IEDPARML 415 (418)
T ss_pred EEecccceeEeEEE-CCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHH---hcCHHHHh
Confidence 99999999999984 789999999999999999999999999999999999 99998654
No 22
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=7.6e-54 Score=460.59 Aligned_cols=227 Identities=38% Similarity=0.586 Sum_probs=202.5
Q ss_pred cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394 677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA 755 (1045)
Q Consensus 677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa 755 (1045)
..+++|++++||+||++|.+| +++||+|++.++|+++|+++|+++++...+.+ .++|+++|++||+++||++||.||+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~-~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPG-GKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTT-ST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhc-cCCChhHeeeehHhhhhHHHHHhcc
Confidence 468899999999999999999 69999999999999999999999998776666 6999999999999999999999999
Q ss_pred EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394 756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT 835 (1045)
Q Consensus 756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~ 835 (1045)
+|++++ +|++++++||||||++++||++|||+|++++++.||+++++++.+++|+|+|+++|++||||||||+|+||++
T Consensus 82 ~~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~ 160 (231)
T PF00198_consen 82 SWDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVE 160 (231)
T ss_dssp EEETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-S
T ss_pred cccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcc
Confidence 998754 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
+|+|||||||+||||+|+++++|++ .+|+++++++|+++|+||||++||+++|+||+.++++ +|+|..++
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~---le~p~~ll 230 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKEL---LENPERLL 230 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHH---HHSTHHHC
T ss_pred eeEccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHH---HhCHHHHh
Confidence 9999999999999999999999999 7899999999999999999999999999999999999 99997653
No 23
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.1e-51 Score=496.61 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=166.7
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...|.++++++++........||++.++- +.++. ++++.|.
T Consensus 384 evdvt~l~~~R~~l~~~~~~~~~~kls~~~~i---------------------------iKA~a~AL~~~P~-------- 428 (590)
T TIGR02927 384 EVDMTKIAALRARAKAAFAEKEGVNLTFLPFF---------------------------AKAVIDALKAHPN-------- 428 (590)
T ss_pred EEEcHHHHHHHHHHHhhhHHhcCCcccHHHHH---------------------------HHHHHHHHHhCCH--------
Confidence 45566788899888865433333466664432 23333 3466666
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
+|.+|..|- ++|+++.++||||||++++||+||||||+|+|||.+|++++++|++|||
T Consensus 429 ----~Na~~~~~~------------------~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr 486 (590)
T TIGR02927 429 ----VNASYNADT------------------KEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARAR 486 (590)
T ss_pred ----hheEEecCC------------------CEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHH
Confidence 567775331 2458889999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEec---C-ceEEEEEEEEeeecccccccChH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDA---E-MRVVAKCILNVTWAADHRVVDGA 1023 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~---~-~~~~~~~~m~ltls~DHRviDG~ 1023 (1045)
+|+|+++||+||||||||+||||+++|+|||||||+||||+|+++++||+.+ | +.+++|++|+||||||||||||+
T Consensus 487 ~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa 566 (590)
T TIGR02927 487 NGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGA 566 (590)
T ss_pred cCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcH
Confidence 9999999999999999999999999999999999999999999999999852 2 24999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcchh
Q psy6394 1024 TVARAATLWKSLVENPALL 1042 (1045)
Q Consensus 1024 ~aa~fl~~~k~~le~P~~l 1042 (1045)
+||+||++||++||||..+
T Consensus 567 ~aa~Fl~~lk~~LE~~~~~ 585 (590)
T TIGR02927 567 DAGRFLTTIKDRLEEAAFE 585 (590)
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 9999999999999999764
No 24
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=8e-50 Score=477.24 Aligned_cols=198 Identities=25% Similarity=0.422 Sum_probs=170.0
Q ss_pred cccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCce
Q psy6394 788 KSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRI 866 (1045)
Q Consensus 788 r~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i 866 (1045)
.++|...+.++++++++..+. +..||++.+ ++ +.+++ ++++.|.
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~-~g~kls~~~---------------------~l------~kA~~~AL~~~P~------- 392 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEK-EGVKLTVLH---------------------IL------MKAVAAALKKFPK------- 392 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhh-cCCcccHHH---------------------HH------HHHHHHHHHhCCh-------
Confidence 356667888999999875543 234565543 22 33333 3566666
Q ss_pred eEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhh
Q psy6394 867 VAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCS 946 (1045)
Q Consensus 867 ~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a 946 (1045)
+|.+|..|. +.|+.+.++||||||++++||+||||||+|+|||.+|++++++|++++
T Consensus 393 -----~Na~~~~~~------------------~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a 449 (546)
T TIGR01348 393 -----FNASLDLGG------------------EQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKA 449 (546)
T ss_pred -----hhEEEeCCC------------------CEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHH
Confidence 566774321 234778889999999999999999999999999999999999999999
Q ss_pred hcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHH
Q psy6394 947 HEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026 (1045)
Q Consensus 947 ~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa 1026 (1045)
|+|+|+++||+||||||||+||||+.+|+|||||||+||||+|+++++|+++++ ++++|++|+||||||||+|||++||
T Consensus 450 r~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-~~~~~~~m~ltls~DHRviDGa~aa 528 (546)
T TIGR01348 450 RDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAA 528 (546)
T ss_pred hcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-EEEEEEEEEEeEeccchhcChHHHH
Confidence 999999999999999999999999999999999999999999999999999765 8999999999999999999999999
Q ss_pred HHHHHHHHhhcCcchhcc
Q psy6394 1027 RAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 1027 ~fl~~~k~~le~P~~ll~ 1044 (1045)
+||++|+++||||..||+
T Consensus 529 ~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 529 RFTTYICESLADIRRLLL 546 (546)
T ss_pred HHHHHHHHHHhCHHhhhC
Confidence 999999999999999875
No 25
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=4.3e-50 Score=453.14 Aligned_cols=198 Identities=24% Similarity=0.373 Sum_probs=169.2
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++........|+++.++ + +.++. ++++.|.
T Consensus 149 evd~t~l~~~r~~~~~~~~~~~~~kls~~~~---------------------l------ikA~a~AL~~~P~-------- 193 (347)
T PRK14843 149 EVDMTEMLALRKKVLEPIMEATGKKTTVTDL---------------------L------SLAVVKTLMKHPY-------- 193 (347)
T ss_pred EEEchHHHHHHHHHHHHHHhhcCCcccHHHH---------------------H------HHHHHHHHHhCcc--------
Confidence 4555678888888875443333346665443 2 22222 3466666
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
||.+|..|. +.|+.++++||||||++++||+||||||||+|||.+|++++++|+++||
T Consensus 194 ----~Na~~~~~~------------------~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar 251 (347)
T PRK14843 194 ----INASLTEDG------------------KTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTL 251 (347)
T ss_pred ----eeEEEecCC------------------CeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 577775431 2347889999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
+|+|+++||+||||||||+||||+++|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus 252 ~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g-~i~~r~~m~lsls~DHRviDGa~aa~ 330 (347)
T PRK14843 252 DGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNG-EIVIRPIMSLGLTIDHRVVDGMAGAK 330 (347)
T ss_pred cCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEECC-eEEEEeEEEEEEecchhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999875 89999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhcc
Q psy6394 1028 AATLWKSLVENPALLLT 1044 (1045)
Q Consensus 1028 fl~~~k~~le~P~~ll~ 1044 (1045)
||++||++||+|..||+
T Consensus 331 Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 331 FMKDLKELIETPISMLI 347 (347)
T ss_pred HHHHHHHHhcCHHHhhC
Confidence 99999999999998874
No 26
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=3.9e-47 Score=462.21 Aligned_cols=143 Identities=33% Similarity=0.562 Sum_probs=138.8
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.+.++||||||++++||+||||||+++++|.+|++++++|++++|+|+|+++||+||||||||+||+|+++|+|||||
T Consensus 491 i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~p 570 (633)
T PRK11854 491 LTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNA 570 (633)
T ss_pred EEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
||+||||+|++.++|+++++ .+.+|++|+||||||||+|||++||+||++|+++||+|.+||+
T Consensus 571 pq~aIlgvG~i~~~p~~~~~-~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 571 PEVAILGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred CceEEEEcccceEEEEEECC-EEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999998765 8999999999999999999999999999999999999998875
No 27
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.4e-45 Score=435.09 Aligned_cols=224 Identities=23% Similarity=0.347 Sum_probs=211.6
Q ss_pred cceeeecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceE
Q psy6394 677 ASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNAS 756 (1045)
Q Consensus 677 ~~~~~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~ 756 (1045)
..+..||++++++||++|..|..+|++|...+|+++.|+++|..+|+.+.+..|.|+|||++|+||+++||++||.||++
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 34678999999999999999988999999999999999999999999888766699999999999999999999999999
Q ss_pred EcC--CCceEEEcCCccEEEEEecC-----CCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeecc
Q psy6394 757 IDP--TQENILVNPDHNISIAIDTK-----HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV 829 (1045)
Q Consensus 757 ~~~--~~~~i~~~~~vnIgiAV~t~-----~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNl 829 (1045)
|++ ..+.++++++|||||||+++ +||+||+||+||+|++.+|.+++.+++.|+|+|||+++||+||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 984 23459999999999999998 58999999999999999999999999999999999999999999999999
Q ss_pred CCccceeecccccccceeeEeeccceeEeEecc-----CCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccc
Q psy6394 830 GNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDA-----EMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILV 903 (1045)
Q Consensus 830 G~~G~~~~tpii~~pq~ailavG~i~~~p~~~~-----~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile 903 (1045)
|+||..+|+||||+||+||||+|++...|+|+. .+++.++++|++++|||||||||+++++||+.++++ |+
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~l---Le 349 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQL---LL 349 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHH---Hh
Confidence 999999999999999999999999999999842 468999999999999999999999999999999999 66
No 28
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.1e-43 Score=424.34 Aligned_cols=143 Identities=41% Similarity=0.680 Sum_probs=137.9
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.+.++|+|+||++++||++|||+|+++++|.+|+++++++++++|+|+|.++|++||||||||+|++|+++|+|||||
T Consensus 405 i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~ 484 (547)
T PRK11855 405 LTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINA 484 (547)
T ss_pred EEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCC
Confidence 47778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
||+||||+|++.++|++.++ .+.+|.+|+|||+||||+|||+++|+||+.|+++||+|.+||+
T Consensus 485 pq~ail~~G~~~~~pv~~~~-~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 485 PEVAILGVGKSQMKPVWDGK-EFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred CceEEEEcccceEeeeeeCC-EEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999987654 8899999999999999999999999999999999999999875
No 29
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.7e-42 Score=385.27 Aligned_cols=198 Identities=28% Similarity=0.434 Sum_probs=169.1
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++...+....|+++.++ + +.++. ++++.|.
T Consensus 107 evd~t~l~~~r~~~~~~~~~~~g~kls~~~~---------------------l------ikA~a~AL~~~P~-------- 151 (306)
T PRK11857 107 EIDMTKLWDLRKSVKDPVLKTEGVKLTFLPF---------------------I------AKAILIALKEFPI-------- 151 (306)
T ss_pred EEEchHHHHHHHHHHHhhhhhcCCCCCHHHH---------------------H------HHHHHHHHHhCcH--------
Confidence 3445578888888886554444446665433 2 23333 3566676
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
+|.+|..+. +.|++++++||||||++++||+||||||||+|||.+|++++++|++++|
T Consensus 152 ----~Na~~~~~~------------------~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar 209 (306)
T PRK11857 152 ----FAAKYDEAT------------------SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAAR 209 (306)
T ss_pred ----hhEEEeCCC------------------CEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHH
Confidence 466664221 2358889999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
+|+|+++||+||||||||+||+|+.+|+|||||||+||||+|++.++|++.+| ++++|++|+||||||||+|||++||+
T Consensus 210 ~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g-~i~~r~~m~lslt~DHRviDGa~aa~ 288 (306)
T PRK11857 210 ERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNG-QIVAGKVMHLTVAADHRWIDGATIGR 288 (306)
T ss_pred cCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEEECC-EEEEeeeeEEeEecchhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999775 89999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhcc
Q psy6394 1028 AATLWKSLVENPALLLT 1044 (1045)
Q Consensus 1028 fl~~~k~~le~P~~ll~ 1044 (1045)
||++||++||+|+.|++
T Consensus 289 Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 289 FASRVKELLEKPEILGV 305 (306)
T ss_pred HHHHHHHHhcCHHhhhc
Confidence 99999999999998764
No 30
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=2.3e-42 Score=371.72 Aligned_cols=143 Identities=42% Similarity=0.641 Sum_probs=126.5
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.++++||||||++++||++|||||+++||+.||++++++++++||+|+|+++||+||||||||+||+|+++|+|||||
T Consensus 89 i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~~pii~~ 168 (231)
T PF00198_consen 89 IVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESFTPIINP 168 (231)
T ss_dssp EEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCEE----T
T ss_pred eeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcceeEccCCc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
||+||||+|+++++|++.+| ++++|++|+||||||||+|||++||+||++|+++||||+.||+
T Consensus 169 pq~ail~vG~i~~~p~~~~~-~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 169 PQVAILGVGAIRDRPVVEDG-EVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp TSSEEEEEEEEEEEEEEETT-CEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred ccceEEEecceEEEEEEEec-cceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 99999999999999999665 8999999999999999999999999999999999999999986
No 31
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.1e-41 Score=393.34 Aligned_cols=197 Identities=25% Similarity=0.410 Sum_probs=169.2
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++...+....|+++.++- +.++. ++++.|.+
T Consensus 209 evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l---------------------------ikA~a~AL~~~P~~------- 254 (407)
T PRK05704 209 EVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF---------------------------VKAVVEALKRYPEV------- 254 (407)
T ss_pred EEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH---------------------------HHHHHHHHHhCcHh-------
Confidence 35556788888888865544334466664432 23333 35666764
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
|.+|..| +|+.+.++||||||++++||+||||||||+|||.+|++++++|++|||
T Consensus 255 -----Na~~~~~--------------------~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar 309 (407)
T PRK05704 255 -----NASIDGD--------------------DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKAR 309 (407)
T ss_pred -----hcEEcCC--------------------eEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 5666432 236778899999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
+|+|+++||+||||||||+||||+.+|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus 310 ~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-~i~~r~~~~lsls~DHRviDGa~aa~ 388 (407)
T PRK05704 310 DGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-QIVIRPMMYLALSYDHRIIDGKEAVG 388 (407)
T ss_pred cCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-EEEEEEEEEEEEEechhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999865 89999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhccC
Q psy6394 1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
||++|+++||||..||+.
T Consensus 389 Fl~~l~~~le~p~~ll~~ 406 (407)
T PRK05704 389 FLVTIKELLEDPERLLLD 406 (407)
T ss_pred HHHHHHHHhhCHHHHhhc
Confidence 999999999999998863
No 32
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=1.4e-41 Score=391.53 Aligned_cols=197 Identities=25% Similarity=0.410 Sum_probs=169.0
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++...+...-|+++.++ + +.++. ++++.|.+
T Consensus 205 evd~t~l~~~r~~~~~~~~~~~~~kls~~~~---------------------l------ikA~a~AL~~~P~~------- 250 (403)
T TIGR01347 205 EVDMSAVMELRKRYKEEFEKKHGVKLGFMSF---------------------F------VKAVVAALKRFPEV------- 250 (403)
T ss_pred EEEHHHHHHHHHHHHhhhHhhcCCCcCHHHH---------------------H------HHHHHHHHHhCcHh-------
Confidence 4555678888888886544333446665443 2 33443 35677764
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
|.+|..| +|+.+.++||||||++++||+||||||||+|||.+|++++++|++|+|
T Consensus 251 -----Na~~~~~--------------------~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar 305 (403)
T TIGR01347 251 -----NAEIDGD--------------------DIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKAR 305 (403)
T ss_pred -----heEEcCC--------------------EEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 5555322 247788999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
+|+|+++||+||||||||+||||+.+|+|||||||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+
T Consensus 306 ~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-~i~~r~~m~lsLt~DHRviDGa~aa~ 384 (403)
T TIGR01347 306 DGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-QIEIRPMMYLALSYDHRLIDGKEAVT 384 (403)
T ss_pred cCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-eEEEEEEEEEEEEecchhhChHHHHH
Confidence 99999999999999999999999999999999999999999999999999875 89999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhccC
Q psy6394 1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
||++|+++||||..||+.
T Consensus 385 Fl~~l~~~le~p~~ll~~ 402 (403)
T TIGR01347 385 FLVTIKELLEDPRRLLLD 402 (403)
T ss_pred HHHHHHHHhcCHHHHHhc
Confidence 999999999999998863
No 33
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=2.8e-41 Score=391.33 Aligned_cols=145 Identities=51% Similarity=0.815 Sum_probs=140.3
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|..++++||||||++++||+||||||+|+|||.+|++++++|++++|+|+|+++||+||||||||+||+|+.+|+|||||
T Consensus 270 i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~ 349 (416)
T PLN02528 270 IRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNL 349 (416)
T ss_pred EEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
||+||||+|++.++|++.+++++.+|++|+||||||||||||++||+||++||++||||.+||++
T Consensus 350 pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~lll~ 414 (416)
T PLN02528 350 PEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLH 414 (416)
T ss_pred CceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHHhc
Confidence 99999999999999999754589999999999999999999999999999999999999999874
No 34
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=3e-41 Score=396.40 Aligned_cols=197 Identities=29% Similarity=0.416 Sum_probs=169.1
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++..+..+..||++.++- +.++. ++++.|.+
T Consensus 340 evdvt~L~~lR~~l~~~~~~~~g~kls~~~~l---------------------------iKA~a~AL~~~P~l------- 385 (539)
T PLN02744 340 DTRVDKLMALRSQLNSLQEASGGKKISVNDLV---------------------------IKAAALALRKVPQC------- 385 (539)
T ss_pred EEEcHHHHHHHHHHHHHhhhcccCccCHHHHH---------------------------HHHHHHHHHhCcHh-------
Confidence 34555789999999877655445577665432 23333 34666764
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
|.+|..| .|.+++++||||||++++||+||||||||+|+|.||++++++|+++||
T Consensus 386 -----Na~~~~~--------------------~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr 440 (539)
T PLN02744 386 -----NSSWTDD--------------------YIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKAR 440 (539)
T ss_pred -----heeeccC--------------------cEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 5665322 247788999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCC-CCCCcceeeeecCCceeEEEecceeEEeEEe-cCceEEEEEEEEeeecccccccChHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVG-NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-AEMRVVAKCILNVTWAADHRVVDGATV 1025 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG-~~g~~~~~~iin~pq~ail~vG~i~~~pv~~-~~~~~~~~~~m~ltls~DHRviDG~~a 1025 (1045)
+|+|+++||+||||||||+| |||+.+|||||||||+||||+|+++++||+. .++++++|++|+||||||||||||++|
T Consensus 441 ~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~A 520 (539)
T PLN02744 441 ENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIG 520 (539)
T ss_pred cCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHH
Confidence 99999999999999999997 8999999999999999999999999999984 234899999999999999999999999
Q ss_pred HHHHHHHHHhhcCcchhcc
Q psy6394 1026 ARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 1026 a~fl~~~k~~le~P~~ll~ 1044 (1045)
|+||++||++||||..||+
T Consensus 521 A~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 521 AEWLKAFKGYIENPESMLL 539 (539)
T ss_pred HHHHHHHHHHhcCHHhhhC
Confidence 9999999999999999875
No 35
>KOG0559|consensus
Probab=100.00 E-value=3.1e-40 Score=354.04 Aligned_cols=198 Identities=28% Similarity=0.409 Sum_probs=173.5
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeE
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVA 868 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~ 868 (1045)
.+|..++.+++++.++..-+-+.-||.. ++ +.+ .+|..+ +++.|++|.
T Consensus 259 EvDMS~lm~mRk~ykdaf~kKhGvKlGf---------------Ms-----~F~---KA~~~A---lq~qPvVNa------ 306 (457)
T KOG0559|consen 259 EVDMSNLMEMRKQYKDAFLKKHGVKLGF---------------MS-----GFS---KAAAYA---LQDQPVVNA------ 306 (457)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCceeee---------------hh-----HHH---HHHHHH---hhhCcceee------
Confidence 5677889999999988766555555532 11 111 123333 588898752
Q ss_pred EEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhc
Q psy6394 869 KCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHE 948 (1045)
Q Consensus 869 ~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~ 948 (1045)
+||| ++|++...++|+|||+|+.||+||||||++.|++.||.++|..|..|||+
T Consensus 307 -------------vIdg-------------~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~ 360 (457)
T KOG0559|consen 307 -------------VIDG-------------DDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARD 360 (457)
T ss_pred -------------eecC-------------CeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhcc
Confidence 4666 34577778999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHH
Q psy6394 949 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARA 1028 (1045)
Q Consensus 949 g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~f 1028 (1045)
|+|..+||.||||||||-|.||..+.||||||||+||||+.+|.++||+.+| ++++|+||++.||||||+|||-+|--|
T Consensus 361 g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-~Vv~RPMMYvALTYDHRliDGREAVtF 439 (457)
T KOG0559|consen 361 GKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-QVVPRPMMYVALTYDHRLIDGREAVTF 439 (457)
T ss_pred CceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-EeeeccceEEEeeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987 999999999999999999999999999
Q ss_pred HHHHHHhhcCcchhccC
Q psy6394 1029 ATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 1029 l~~~k~~le~P~~ll~~ 1045 (1045)
|+.+|+++|||..||++
T Consensus 440 Lr~iK~~VEDP~~mll~ 456 (457)
T KOG0559|consen 440 LRKIKEAVEDPRKMLLD 456 (457)
T ss_pred HHHHHHHhhCHHHHhhc
Confidence 99999999999999985
No 36
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=2.1e-40 Score=385.99 Aligned_cols=144 Identities=32% Similarity=0.513 Sum_probs=138.5
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.++++||||||++++||+||||||||+|||.+|++++++|++++|+|+|+++||+||||||||+||+|+.+|+|||||
T Consensus 290 i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~ 369 (435)
T TIGR01349 290 IRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINP 369 (435)
T ss_pred EEEeCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCc--eEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEM--RVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~--~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
||+||||+|++.++||+.++. .+++|++|+||||||||+|||++||+||++|+++||||..||+
T Consensus 370 pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 370 PQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred CceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999997652 2999999999999999999999999999999999999999875
No 37
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.5e-38 Score=362.99 Aligned_cols=144 Identities=38% Similarity=0.624 Sum_probs=140.3
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.+.++|||+||++++||+||||||||+|++.+|++++.+|+.++|+|+|+++||+||||||||+|+||+..|+|||||
T Consensus 261 iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~ 340 (404)
T COG0508 261 IVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINP 340 (404)
T ss_pred EEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccC
Confidence 47778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
||+||||+|++.++||+.++ ++++|+||+|+||||||+|||++|++||.++|++||||..||++
T Consensus 341 Pq~aILgv~~~~~rpv~~~~-~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~~ 404 (404)
T COG0508 341 PQVAILGVGAIEERPVVVGG-EIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERLLLE 404 (404)
T ss_pred hhHheeeccccccCceEecC-ceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChhhhhcC
Confidence 99999999999999999887 99999999999999999999999999999999999999999874
No 38
>KOG0558|consensus
Probab=100.00 E-value=3e-37 Score=329.10 Aligned_cols=185 Identities=48% Similarity=0.772 Sum_probs=148.5
Q ss_pred eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.++|+|.|+||+|.|++|.+|+ |||||+|+++|.||||++|||+++|+|.|||+|++|+.+.+|.+.||++|..++++
T Consensus 64 vv~f~LsdiGEGI~Ev~vkeWf--VKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve 141 (474)
T KOG0558|consen 64 VVQFKLSDIGEGIAEVTVKEWF--VKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVE 141 (474)
T ss_pred eEEEEhhhccccceeeeeeeeh--hhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeec
Confidence 7899999999999999999999 99999999999999999999999999999999999999999999999999999987
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCcccccccccccc
Q psy6394 267 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKI 346 (1045)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1045)
+..+..+..+ ++|.+ +. +. +. ....+..+.
T Consensus 142 ~~~ds~e~s~-----es~~v--------------s~---------------~~------------~~----~~~~~~~~t 171 (474)
T KOG0558|consen 142 DSQDSPEDSD-----ESPAV--------------SL---------------GE------------SK----QGEESLLKT 171 (474)
T ss_pred cCcCCcccCC-----ccccc--------------cC---------------CC------------Cc----hhhhhcccc
Confidence 6533221100 00000 00 00 00 001134457
Q ss_pred ccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcCCCcccccccc--------ccc-------cccceeEEecce
Q psy6394 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHT--------AHV-------REASNVISIRGY 411 (1045)
Q Consensus 347 ~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~l~g~ 411 (1045)
+|||+|||||+||||||+.|+|||++|||+|||||+|+++.+.....+.+ +.+ -.+|.++||+|+
T Consensus 172 laTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf 251 (474)
T KOG0558|consen 172 LATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGF 251 (474)
T ss_pred ccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhH
Confidence 89999999999999999999999999999999999999998664322211 111 246999999999
Q ss_pred eeeccccccccc
Q psy6394 412 VKGMFKSMTEAH 423 (1045)
Q Consensus 412 r~~m~k~Mt~S~ 423 (1045)
+|+|.|+|+++.
T Consensus 252 ~rAMvKtMt~al 263 (474)
T KOG0558|consen 252 SRAMVKTMTEAL 263 (474)
T ss_pred HHHHHHHHHHHh
Confidence 999999999974
No 39
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.5e-36 Score=357.50 Aligned_cols=196 Identities=24% Similarity=0.350 Sum_probs=171.8
Q ss_pred ecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCc
Q psy6394 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMR 865 (1045)
Q Consensus 787 Ir~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~ 865 (1045)
++.++.+.+.+.+..+++-..+.+.+|++..++. +.|+. ++++.|.
T Consensus 143 vr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI---------------------------~kAvv~AL~~~P~------ 189 (1228)
T PRK12270 143 VRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLI---------------------------GYALVQALKAFPN------ 189 (1228)
T ss_pred eecccHHHHHHHHHHHHHHhhhccCCcccHHHHH---------------------------HHHHHHHHHhCch------
Confidence 5678889999999999999999999999865432 22322 3466665
Q ss_pred eeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecC-----CceeeeeecccCCCCHHHHHHHHH
Q psy6394 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTK-----HGLVVPNIKSVNKLSLLDITRELL 940 (1045)
Q Consensus 866 i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~-----~GL~vPvi~~a~~~sl~~ia~~~~ 940 (1045)
||.+|.. +||. ..|+.+.++||||||+++ +||+||+||+||+|++.+|..+++
T Consensus 190 ------mNasy~~----~DGK------------p~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~ 247 (1228)
T PRK12270 190 ------MNRHYAE----VDGK------------PTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYE 247 (1228)
T ss_pred ------hhceeec----cCCC------------ceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHH
Confidence 5666532 3553 235889999999999999 699999999999999999999999
Q ss_pred HHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEec-----CceEEEEEEEEeeecc
Q psy6394 941 RIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDA-----EMRVVAKCILNVTWAA 1015 (1045)
Q Consensus 941 ~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~-----~~~~~~~~~m~ltls~ 1015 (1045)
+|+.|||+|+|+++||+||||||||+||+|+.+|+|||||||+||||+|++...|++.+ .+++.+++||+||+||
T Consensus 248 dLV~KAR~gKLt~eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTy 327 (1228)
T PRK12270 248 DIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTY 327 (1228)
T ss_pred HHHHHHHcCCCCHHHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeec
Confidence 99999999999999999999999999999999999999999999999999998888743 2479999999999999
Q ss_pred cccccChHHHHHHHHHHHHhhc
Q psy6394 1016 DHRVVDGATVARAATLWKSLVE 1037 (1045)
Q Consensus 1016 DHRviDG~~aa~fl~~~k~~le 1037 (1045)
|||||||+++++||+.|+++||
T Consensus 328 DHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 328 DHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred cceeeccHhHHHHHHHHHHHHh
Confidence 9999999999999999999998
No 40
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.97 E-value=2.3e-31 Score=310.79 Aligned_cols=143 Identities=40% Similarity=0.653 Sum_probs=138.7
Q ss_pred ccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecC
Q psy6394 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 901 ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~ 980 (1045)
|+.+..+|+|+||++++||++|||++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.+|+|||||
T Consensus 268 i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~ 347 (411)
T PRK11856 268 IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINP 347 (411)
T ss_pred EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCC
Confidence 37778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 981 RQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
||+|||++|++.++||+.+| ++++|.+|+|||+||||+|||+++++||+.|+++||||..||+
T Consensus 348 p~~ail~iG~~~~~~~~~~g-~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 348 PEVAILGVGAIVERPVVVDG-EIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred CceEEEEcccceEEEEEECC-EEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 99999999999999999765 8999999999999999999999999999999999999999986
No 41
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.64 E-value=5.2e-16 Score=138.18 Aligned_cols=74 Identities=28% Similarity=0.481 Sum_probs=72.1
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.+|++|.+|..+++++|.+|+ |++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~--v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWL--VEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEES--SSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEE--ECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 379999999999999999999 99999999999999999999999999999999999999999999999999986
No 42
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.64 E-value=5.5e-16 Score=178.16 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=74.2
Q ss_pred eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
..+|+||+||++|+||+|++|+ |++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~--~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~ 77 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWL--VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVA 77 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEE--cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEe
Confidence 3689999999999999999999 999999999999999999999999999999999999999999999999999996
No 43
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.60 E-value=3.5e-15 Score=132.83 Aligned_cols=74 Identities=27% Similarity=0.470 Sum_probs=72.1
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
+++++|.+|..++++++.+|+ +++||.|++||+||+|||||+.++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~--v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWL--VEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEES--SSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEE--ECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 478999999999999999999 99999999999999999999999999999999999999999999999999986
No 44
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.59 E-value=3.5e-15 Score=171.47 Aligned_cols=120 Identities=20% Similarity=0.284 Sum_probs=103.7
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..+++||++|++|+||+|++|+ |++||.|++||+|++||+||++++|+||.+|+|.++.+++|+.|.+|++|+.++..
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~--~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~ 79 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWL--VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADA 79 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEE--cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 3689999999999999999999 99999999999999999999999999999999999999999999999999999753
Q ss_pred CccccccccccccccCCCCCCCCCCCCCCCCccccccCCCCCCCcCccccCCCCCccchHhH
Q psy6394 527 DEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDI 588 (1045)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV 588 (1045)
.... ..-...++|.+++++++ ++++....+++..+++...++
T Consensus 80 ~~~~-------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 80 EVSD-------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred CCCc-------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 2110 01134578899998888 899999888888777765555
No 45
>PRK06748 hypothetical protein; Validated
Probab=99.53 E-value=3.6e-14 Score=127.72 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=60.5
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc-CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|.+|+ |++||.|++||+|++||| ||++++|+||.+|+|.+|++++||.|++|++|+.|+
T Consensus 12 ~G~I~~w~--vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 12 YGKVEKLF--VRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred cEEEEEEE--eCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 39999999 999999999999999999 999999999999999999999999999999999996
No 46
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.49 E-value=1.5e-13 Score=161.83 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=75.7
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEEEEec
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEVE 266 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~i~~~ 266 (1045)
++|+||++|++|+||+|.+|+ |++||.|++||+|++|||||++++|+||.+|+|.+|++++|+ .|++|++|+.|+.+
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWL--KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred cceecCCCCCCcceeEEEEEE--ecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 489999999999999999999 999999999999999999999999999999999999999995 79999999999865
Q ss_pred Ccc
Q psy6394 267 DEG 269 (1045)
Q Consensus 267 ~~~ 269 (1045)
+++
T Consensus 81 ~~~ 83 (464)
T PRK11892 81 GES 83 (464)
T ss_pred CCc
Confidence 543
No 47
>PRK06748 hypothetical protein; Validated
Probab=99.46 E-value=2.2e-13 Score=122.61 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEec-cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
-|+|.+|+ |++||.|++||+|++||| ||+.++|+||.+|+|.+|++++||.|++|++|++|+.
T Consensus 12 ~G~I~~w~--vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLF--VRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEE--eCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 48999999 999999999999999999 9999999999999999999999999999999999963
No 48
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.36 E-value=2.8e-12 Score=113.32 Aligned_cols=62 Identities=31% Similarity=0.351 Sum_probs=60.2
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|.+|+ |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 10 ~G~i~~~~--v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVV--VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 49999999 999999999999999999999999999999999999999999999999999884
No 49
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.31 E-value=9.8e-12 Score=110.19 Aligned_cols=72 Identities=26% Similarity=0.452 Sum_probs=69.6
Q ss_pred EEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 190 ~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
|.+|++|.++.+|.+.+|+ +++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+.+..|++|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~--v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWL--KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEE--cCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6789999999999999999 99999999999999999999999999999999999999999999999999874
No 50
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.31 E-value=7.5e-12 Score=147.58 Aligned_cols=80 Identities=26% Similarity=0.452 Sum_probs=75.6
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEEeec
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEVE 526 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i~~~ 526 (1045)
++++||++|++|+||+|.+|+ |++||.|++||.|++|||||++++++||.+|+|.++++++|+ .|++|++|++|+.+
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWL--KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred cceecCCCCCCcceeEEEEEE--ecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 589999999999999999999 999999999999999999999999999999999999999995 79999999999765
Q ss_pred Ccc
Q psy6394 527 DEG 529 (1045)
Q Consensus 527 ~~~ 529 (1045)
++.
T Consensus 81 ~~~ 83 (464)
T PRK11892 81 GES 83 (464)
T ss_pred CCc
Confidence 443
No 51
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=1.7e-11 Score=107.90 Aligned_cols=61 Identities=34% Similarity=0.388 Sum_probs=59.7
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
|+|.+|+ +++||+|++||+|++||+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 10 G~i~~~~--v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIV--VKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEEE--eCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 9999999 999999999999999999999999999999999999999999999999999884
No 52
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.26 E-value=1.8e-11 Score=108.19 Aligned_cols=62 Identities=31% Similarity=0.351 Sum_probs=60.2
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|.+|+ +++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.+..|++|+.|+
T Consensus 10 ~G~i~~~~--v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVV--VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 48999999 999999999999999999999999999999999999999999999999999884
No 53
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.24 E-value=1.5e-11 Score=122.85 Aligned_cols=61 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
|++.+.+ |++||+|++||.||.||.||+..+|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus 79 Gtv~~~~--V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 79 GTVYKPF--VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred eEEEEEe--eccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 8999999 999999999999999999999999999999999999999999999999999985
No 54
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.22 E-value=4.4e-11 Score=106.05 Aligned_cols=72 Identities=26% Similarity=0.448 Sum_probs=69.2
Q ss_pred EEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 450 i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
+.+|++|.++.+|++.+|+ +++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~--v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWL--KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEE--cCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 5689999999999999999 99999999999999999999999999999999999999999999999999864
No 55
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.21 E-value=1e-11 Score=95.80 Aligned_cols=38 Identities=37% Similarity=0.744 Sum_probs=34.2
Q ss_pred ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHh
Q psy6394 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIIT 382 (1045)
Q Consensus 345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~ 382 (1045)
++.+||+||+||+|+|||++.|+|||++|||+|+||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 56899999999999999999999999999999999985
No 56
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.13 E-value=1.8e-10 Score=101.46 Aligned_cols=62 Identities=34% Similarity=0.382 Sum_probs=60.0
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
-|+|.+|+ +++||.|++||+|+++|+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~G~i~~~~--v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIV--VKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEE--eCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 48999999 999999999999999999999999999999999999999999999999999884
No 57
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.11 E-value=2.5e-10 Score=111.93 Aligned_cols=61 Identities=25% Similarity=0.242 Sum_probs=59.6
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.|+|.+|+ +++||.|++||+|+++|+||+..+|.||.+|+|.+|++++||.|..|++|+.|
T Consensus 69 ~G~V~~i~--V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVL--VAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEEEEEEE--eCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 48999999 99999999999999999999999999999999999999999999999999987
No 58
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.10 E-value=1.4e-10 Score=115.92 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=60.0
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
-|++.+.+ |++||+|++||.||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|+
T Consensus 78 ~Gtv~~~~--V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPF--VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEe--eccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 38899999 999999999999999999999999999999999999999999999999999985
No 59
>PRK07051 hypothetical protein; Validated
Probab=99.06 E-value=8.4e-10 Score=99.86 Aligned_cols=70 Identities=20% Similarity=0.137 Sum_probs=63.2
Q ss_pred eEEEEccCCCCCCceEEEEE-------EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCe
Q psy6394 187 LIQFKLADIGEGIREVNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP 259 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~ 259 (1045)
+.+|..|. .|++.+ |+ +++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++
T Consensus 3 ~~~~~ap~------~g~~~~~~~~~~~~~--v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~ 74 (80)
T PRK07051 3 QHEIVSPL------PGTFYRRPSPDAPPY--VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQV 74 (80)
T ss_pred ccEEeCCC------ceEEEecCCCCCCCc--cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCE
Confidence 44566663 356667 99 9999999999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q psy6394 260 LLDIE 264 (1045)
Q Consensus 260 l~~i~ 264 (1045)
|+.|+
T Consensus 75 l~~i~ 79 (80)
T PRK07051 75 LARIE 79 (80)
T ss_pred EEEEe
Confidence 99985
No 60
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.04 E-value=6.3e-10 Score=112.33 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=59.5
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.|+|.+|+ |++||.|++||.|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 92 ~G~I~~~~--V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRIL--VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CeEEEEEE--eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 48999999 99999999999999999999999999999999999999999999999999987
No 61
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.00 E-value=1.1e-09 Score=107.34 Aligned_cols=61 Identities=25% Similarity=0.242 Sum_probs=59.5
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
.|+|.+|+ +++||.|++||.|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 69 ~G~V~~i~--V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVL--VAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CEEEEEEE--eCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 48999999 99999999999999999999999999999999999999999999999999987
No 62
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.99 E-value=8.9e-10 Score=117.87 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=55.5
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
+|+ |++||.|++||+||+||+||+.++|+|+.+|+|.+|++++||.|.+|++|+.|+
T Consensus 217 ~w~--VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 217 PPF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cce--eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 399 999999999999999999999999999999999999999999999999999985
No 63
>PRK07051 hypothetical protein; Validated
Probab=98.97 E-value=2.7e-09 Score=96.59 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=63.9
Q ss_pred eEEEEecCCCCCcceeEEEE-------eeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCc
Q psy6394 447 LIQFNLADIGEGIREVNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP 519 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~ 519 (1045)
..++..|.. |++.+ |+ +++||.|++||.|+++|+||+.++|.||.+|+|.++++++|+.|..|++
T Consensus 3 ~~~~~ap~~------g~~~~~~~~~~~~~--v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~ 74 (80)
T PRK07051 3 QHEIVSPLP------GTFYRRPSPDAPPY--VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQV 74 (80)
T ss_pred ccEEeCCCc------eEEEecCCCCCCCc--cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCE
Confidence 456667743 56777 99 9999999999999999999999999999999999999999999999999
Q ss_pred eEEEe
Q psy6394 520 LLDIE 524 (1045)
Q Consensus 520 l~~i~ 524 (1045)
|++++
T Consensus 75 l~~i~ 79 (80)
T PRK07051 75 LARIE 79 (80)
T ss_pred EEEEe
Confidence 99985
No 64
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.97 E-value=1.4e-09 Score=110.73 Aligned_cols=61 Identities=26% Similarity=0.344 Sum_probs=58.0
Q ss_pred EEEEE-------EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 202 VNIKE-------WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 202 g~i~~-------w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
|++.+ |+ |++||.|++||+||.||+||+..+|.|+.+|+|.+|+++.|+.|..|++|+.|+
T Consensus 89 G~~~~~~~P~~~~~--v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 89 GTFYRAPSPDAKPF--VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecCCCCCCcc--ccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 66665 99 999999999999999999999999999999999999999999999999999874
No 65
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.96 E-value=2.7e-09 Score=92.17 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=59.4
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
-+|.|.+|+ +++||.|++||.|+++|++|+..+|.||.+|+|.+++++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~--v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVL--VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEE--eCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 469999999 99999999999999999999999999999999999999999999999999875
No 66
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.91 E-value=3.3e-09 Score=107.22 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=59.4
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
.|+|.+|+ +++||.|++||.|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 92 ~G~I~~~~--V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRIL--VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CeEEEEEE--eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 48899999 99999999999999999999999999999999999999999999999999987
No 67
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.90 E-value=3.5e-09 Score=107.73 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=55.1
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+ |++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus 99 ~~~--v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 99 PPF--VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred Ccc--cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 399 999999999999999999999999999999999999999999999999999873
No 68
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.87 E-value=4.5e-09 Score=127.00 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=63.3
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
++..|. |+|++|+ |++||.|++||+|++||+||++.+|.||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 528 v~apm~-G~V~~~~--V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 528 ITVAIP-GSIIAIH--VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred EecCcc-eEEEEEE--eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 444555 9999999 999999999999999999999999999999999999999999999999999996
No 69
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.85 E-value=5.4e-09 Score=111.98 Aligned_cols=68 Identities=26% Similarity=0.331 Sum_probs=61.8
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
..-+..|+.|+ .|+ |++||.|++||.|++||+||+.++|+||.+|+|.+|++++||.|.+|++|+.|+
T Consensus 206 Gtf~r~p~pge--------~w~--VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 206 GTFYRSPAPGE--------PPF--VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEEeccCCCC--------cce--eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 34455666654 799 999999999999999999999999999999999999999999999999999984
No 70
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=98.85 E-value=4.7e-10 Score=86.66 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.8
Q ss_pred CCCCCccccccCCCCCCCcCccccCCCCCccchHhHHh
Q psy6394 553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIIT 590 (1045)
Q Consensus 553 ~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~ 590 (1045)
++.+||++|++|+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 46789999999999999999999999999999999974
No 71
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.85 E-value=1.1e-08 Score=88.43 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=59.3
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
-.|.+.+|+ +++||.|++||.|+++|++|...+|.||.+|+|.+++++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~--v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVL--VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEE--eCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 468899999 99999999999999999999999999999999999999999999999999864
No 72
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.84 E-value=2.3e-08 Score=86.52 Aligned_cols=73 Identities=40% Similarity=0.632 Sum_probs=70.2
Q ss_pred EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
++.+|+++....+|+|.+|+ ++.|+.|..|++++.+|++|+.+.+.++.+|++.+.++.+|+.+..|++|++|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~--~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEE--ECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 47899999999999999999 99999999999999999999999999999999999999999999999999874
No 73
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.80 E-value=1.1e-08 Score=104.18 Aligned_cols=57 Identities=28% Similarity=0.395 Sum_probs=55.3
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+ |++||.|++||.||.||+||+.++|+|+.+|+|.+|++++|+.|..|++|+.|+
T Consensus 100 ~~~--v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 100 KPF--VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred Ccc--ccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 499 999999999999999999999999999999999999999999999999999874
No 74
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.75 E-value=6.2e-08 Score=83.81 Aligned_cols=73 Identities=38% Similarity=0.621 Sum_probs=70.1
Q ss_pred EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
++.+|+++....+|+|.+|+ +..|+.|..|++++.++++|+..++.+|.+|++.+.++.+|+.+..|++|++|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~--~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEE--ECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 47899999999999999999 99999999999999999999999999999999999999999999999999874
No 75
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.74 E-value=2.2e-08 Score=101.96 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=55.3
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+ |++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 99 ~~~--v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 99 PPF--VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred Ccc--cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 599 999999999999999999999999999999999999999999999999999873
No 76
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.72 E-value=2.3e-08 Score=130.59 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=60.2
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|.+|+ |++||.|++||+|++|||||++++|.||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~--v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVL--VEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEE--eCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 49999999 999999999999999999999999999999999999999999999999999884
No 77
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.71 E-value=2.9e-08 Score=120.16 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=61.0
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
.|+|++|+ |++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~--V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIH--VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEE--eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 48999999 9999999999999999999999999999999999999999999999999999963
No 78
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=98.71 E-value=2.4e-07 Score=98.64 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=120.5
Q ss_pred CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEe
Q psy6394 698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAID 777 (1045)
Q Consensus 698 ~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~ 777 (1045)
..-|.+.++.++|+|.|.++.++ .++++...++.++.+|+-++|+|+-++.+ ++++++++.++.+.+|-
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~-~g~v~~~d~i~ps~Tv~ 91 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVD-DGEVVYYDRIDPSYTVF 91 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEET-TSCEEEESS-EEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeC-CCcEEEECCcceeeeEE
Confidence 46799999999999999877553 46899999999999999999999999986 34899999999999998
Q ss_pred cC-CCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCCCc-cCCCceEeeccCCccceeecc-ccccc--ceeeEee
Q psy6394 778 TK-HGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLPRD-IQGGTISMSNVGNVGGTLVQP-IIVPG--QVCIVAF 851 (1045)
Q Consensus 778 t~-~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~~d-~~ggTftISNlG~~G~~~~tp-ii~~p--q~ailav 851 (1045)
.+ ++...-+.- .-..++.++.+...+.++++++. .+.++. .....|.+|++=-+.-+.++. +-+.+ ..-++..
T Consensus 92 ~~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~ 170 (206)
T PF00302_consen 92 HKDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITW 170 (206)
T ss_dssp ETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEE
T ss_pred eCCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEe
Confidence 64 454432211 12347888888888877776553 344432 334567787776555444322 22221 1247888
Q ss_pred ccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhh
Q psy6394 852 GKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLW 895 (1045)
Q Consensus 852 G~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~ 895 (1045)
|+..+. +| |-.||+++..+|.++||..+++|++.+
T Consensus 171 GK~~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~l 205 (206)
T PF00302_consen 171 GKYFEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEEL 205 (206)
T ss_dssp E--EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHH
T ss_pred eeeEeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHh
Confidence 887543 23 578999999999999999999999876
No 79
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.65 E-value=4.2e-08 Score=119.17 Aligned_cols=63 Identities=30% Similarity=0.379 Sum_probs=58.3
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 260 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l 260 (1045)
++..|. |+|++|+ |++||.|++||+|++||+||++++|.||.+|+|.+|++++|+.|.+|++|
T Consensus 520 v~ap~~-G~v~~~~--V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 520 VTAPIA-GSIVKVK--VSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EeCCcc-EEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 333444 9999999 99999999999999999999999999999999999999999999999975
No 80
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.64 E-value=5.4e-08 Score=125.93 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=62.7
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
++..|. |+|++|+ |++||.|++||+|++||+||++++|.||.+|+|.+|++++|+.|.+|++|+.|+
T Consensus 1077 I~a~~~-G~v~~~~--v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1077 VGAPMP-GVIIEVK--VSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred eecCCC-cEEEEEE--eCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 455554 9999999 999999999999999999999999999999999999999999999999999884
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.62 E-value=7.7e-08 Score=116.99 Aligned_cols=61 Identities=38% Similarity=0.427 Sum_probs=59.6
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.|+|++|+ |++||.|++||+||+||+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 532 ~G~I~~~~--V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVI--VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred cEEEEEEE--eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 48999999 99999999999999999999999999999999999999999999999999987
No 82
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=98.59 E-value=1.1e-06 Score=94.20 Aligned_cols=177 Identities=15% Similarity=0.129 Sum_probs=123.1
Q ss_pred CCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecC
Q psy6394 700 IPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTK 779 (1045)
Q Consensus 700 iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~ 779 (1045)
-|++.++.++|+|+|.++.++ .++++.+.++.|+.+|+-++|+|+-++.+ ++++.++.++.+..|-.+
T Consensus 30 ~~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~--~~v~~~D~i~ps~Ti~~~ 97 (219)
T PRK13757 30 QCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKD--GELVIWDSVHPCYTVFHE 97 (219)
T ss_pred CCceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEEC--CeEEEEeEEeeeEEEEeC
Confidence 345999999999999866543 47899999999999999999999999963 678888999999999865
Q ss_pred C-CeeeeeecccccccHHHHHHHHHHHHhccccC-CCCCCccCCCceEeeccCCccceee-ccccccc--ceeeEeeccc
Q psy6394 780 H-GLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLPRDIQGGTISMSNVGNVGGTLV-QPIIVPG--QVCIVAFGKI 854 (1045)
Q Consensus 780 ~-GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~~d~~ggTftISNlG~~G~~~~-tpii~~p--q~ailavG~i 854 (1045)
+ +...-+ .-.-..++.++.+.....++++.+. .+-+.......|.||.+=-+.-+.+ .++.+.. .+-++..|+.
T Consensus 98 ~~~tFs~~-~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy 176 (219)
T PRK13757 98 QTETFSSL-WSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY 176 (219)
T ss_pred CCceEEEE-EecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeece
Confidence 5 433322 1222335666666666666666654 3434333345666665544332222 1111111 1236788877
Q ss_pred eeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhc
Q psy6394 855 QLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898 (1045)
Q Consensus 855 ~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~ 898 (1045)
.++ +| |-+|++++..+|-++||..+++|++.+.++
T Consensus 177 ~~~-----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~ 211 (219)
T PRK13757 177 YTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQY 211 (219)
T ss_pred EEE-----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHH
Confidence 432 22 578999999999999999999999999887
No 83
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.56 E-value=1.1e-07 Score=124.37 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=60.2
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|.+|+ |++||.|++||+|++|||||++++|+||.+|+|.++++++||.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~--v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVL--VEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEE--eCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 58999999 999999999999999999999999999999999999999999999999999874
No 84
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.50 E-value=1.8e-07 Score=113.68 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=56.3
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCce
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l 520 (1045)
-|+|++|+ |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 525 ~G~v~~~~--V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVK--VSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 48999999 99999999999999999999999999999999999999999999999975
No 85
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.48 E-value=2.9e-07 Score=112.03 Aligned_cols=61 Identities=38% Similarity=0.427 Sum_probs=59.6
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
.|+|.+|+ |++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 532 ~G~I~~~~--V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVI--VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred cEEEEEEE--eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 58899999 99999999999999999999999999999999999999999999999999987
No 86
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.47 E-value=3.3e-07 Score=111.80 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=60.3
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|.+|+ |++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 530 ~G~v~~~~--V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVK--VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEE--eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 48999999 999999999999999999999999999999999999999999999999999985
No 87
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.43 E-value=3.6e-07 Score=118.48 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=60.1
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|++|+ |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1082 ~G~v~~~~--v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVK--VSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEE--eCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 48999999 999999999999999999999999999999999999999999999999999874
No 88
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.40 E-value=5.5e-07 Score=117.29 Aligned_cols=67 Identities=28% Similarity=0.404 Sum_probs=62.7
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
++..|. |+|++|+ |++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1079 v~apm~-G~v~~i~--v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1079 VGAPMP-GSVVTVL--VKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred EeCCce-EEEEEEE--cCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 344444 9999999 999999999999999999999999999999999999999999999999999985
No 89
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.33 E-value=7.5e-07 Score=103.70 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=60.3
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|+... |++|++|.+||+|+++|.|||+..|.||.+|+|+++.+.+||.|..|++|+.|+
T Consensus 583 pG~v~~v~--V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVA--VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEE--ecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 38999999 999999999999999999999999999999999999999999999999999985
No 90
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.31 E-value=7.7e-07 Score=106.25 Aligned_cols=67 Identities=30% Similarity=0.439 Sum_probs=63.3
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
+|..|. |.|++.. |++||+|++||+|+.+|.|||+..|.||.||+|.+++|+.||.|..|+.|..++
T Consensus 1082 igApmp-G~Vv~v~--V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1082 IGAPMP-GVVVEVK--VKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred cCCCCC-CceEEEE--EccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 566676 9999999 999999999999999999999999999999999999999999999999998874
No 91
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.30 E-value=1.3e-06 Score=106.55 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=60.3
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|.+|+ |++||.|++||+|+++|++|+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 530 ~G~v~~~~--V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVK--VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEE--eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 58899999 999999999999999999999999999999999999999999999999999985
No 92
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.18 E-value=3e-06 Score=110.52 Aligned_cols=62 Identities=29% Similarity=0.381 Sum_probs=60.3
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|++|+ |++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~--v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVL--VKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEE--cCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 48999999 999999999999999999999999999999999999999999999999999985
No 93
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.12 E-value=3.6e-06 Score=98.19 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=60.1
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|+... |++|+.|.+||+|+.+|.||++..|.||.+|+|.++.+.+||.|..|++|+.|+
T Consensus 583 pG~v~~v~--V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVA--VKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEE--ecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 38899999 999999999999999999999999999999999999999999999999999885
No 94
>KOG0369|consensus
Probab=98.01 E-value=7.9e-06 Score=95.81 Aligned_cols=68 Identities=26% Similarity=0.359 Sum_probs=63.8
Q ss_pred CCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 194 ~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.+|..|. |+|+++. |++|++|++||+||.+..|||+|-|.||.+|+|+++++..|+.+.-|+.++.++
T Consensus 1108 ~igAPMp-G~vieik--vk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1108 HIGAPMP-GTVIEIK--VKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred cccCCCC-CceEEEE--EecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 3566666 9999999 999999999999999999999999999999999999999999999999999885
No 95
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.92 E-value=1.1e-05 Score=96.69 Aligned_cols=61 Identities=30% Similarity=0.425 Sum_probs=59.2
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
|.|++.. |++||+|++||+|+.+|.||++..|.||++|+|.+++|+.||.+..|+.|..++
T Consensus 1088 G~Vv~v~--V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVK--VKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEE--EccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 7899999 999999999999999999999999999999999999999999999999998874
No 96
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.87 E-value=2.1e-05 Score=73.79 Aligned_cols=61 Identities=23% Similarity=0.129 Sum_probs=49.0
Q ss_pred EEEccCCCCCCceEEEEE-EeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC
Q psy6394 189 QFKLADIGEGIREVNIKE-WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD 252 (1045)
Q Consensus 189 ~~~~P~lg~~~~eg~i~~-w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~ 252 (1045)
.+-|-+.+..+ =|+|.. |+ +++|+.|++||+|++||++|+..+|.||.+|+|.++..+.++
T Consensus 17 ~lGlt~~~~~~-lG~i~~i~~--~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 17 TVGITDYAQDL-LGDIVFVEL--PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEeeCHHHHhh-CCCEEEEEe--cCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 34444444433 366777 55 778999999999999999999999999999999999887665
No 97
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.73 E-value=5e-05 Score=71.23 Aligned_cols=63 Identities=22% Similarity=0.117 Sum_probs=49.1
Q ss_pred EEEEecCCCCCcceeEEEE-eeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCE
Q psy6394 448 IQFNLADIGEGIREVNIKE-WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 513 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~-w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~ 513 (1045)
..+-|-+.+..+ -|+|.. |+ +++|+.|++||.|++||++|+..+|.||.+|+|.+++.+.++.
T Consensus 16 ~~lGlt~~~~~~-lG~i~~i~~--~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 16 ATVGITDYAQDL-LGDIVFVEL--PEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEeeCHHHHhh-CCCEEEEEe--cCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 344444443322 356776 67 7789999999999999999999999999999999998665543
No 98
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=97.63 E-value=0.0012 Score=68.47 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=124.0
Q ss_pred hcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEE
Q psy6394 696 EANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIA 775 (1045)
Q Consensus 696 ~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiA 775 (1045)
++...||+.+....|++.+-.+.++ .+++++++++.|+.+++.++++|+-++. ++.+.+.+.++..+.
T Consensus 24 R~~~~p~y~i~~~LDvtn~~~~vk~----------~~l~Ff~a~l~avtr~~n~~~EFRlr~~--~~~~~~~d~v~p~~t 91 (219)
T COG4845 24 RLLQYPHYDINLQLDVTNFYGYVKE----------NGLSFFPALLYAVTRCANRHQEFRLRIQ--NGQLGYWDNVPPMYT 91 (219)
T ss_pred hhcccceEeeeeeeehhHHHHHHHH----------cCCcchHHHHHHHHHHhcccHHhHhhhc--CCeeEEeecCCcceE
Confidence 3457999999999999998666543 3689999999999999999999999998 478999999999999
Q ss_pred EecCCC-eeeeeecccccccHHHHHHHHHHHHhccccCC-CCCCccCCCceEeeccCCccceeecccccccceeeEeec-
Q psy6394 776 IDTKHG-LVVPNIKSVNKLCLLDITRELLRIQGCSHEGK-VLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG- 852 (1045)
Q Consensus 776 V~t~~G-L~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k-l~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG- 852 (1045)
|..+++ ++. ++----+.+..++.+....-+++.+.+. +..+|-.-. -+-+++.+-...||.+- +-.+
T Consensus 92 v~~~~~e~Fs-~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~--~~~~~s~lPWlsFtslS-------~~~~~ 161 (219)
T COG4845 92 VFHGETETFS-VLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPC--DVYIFSNLPWLSFTSLS-------HHYRR 161 (219)
T ss_pred EEcCCCcEEE-EEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcc--eeEEeccccccceeeee-------eeccC
Confidence 998655 433 2222245667777776666666655543 212111111 11122222222233321 1111
Q ss_pred -cceeEeEe------ccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCc
Q psy6394 853 -KIQLLPRF------DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDH 907 (1045)
Q Consensus 853 -~i~~~p~~------~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v 907 (1045)
++.-.|++ ..||+ -.|+++...+|-.+||-..+.|++.+.++ +.+|..
T Consensus 162 ~k~~~~PiF~~Grf~~~~Gk----l~lPlavq~hHA~vDG~Hi~~l~~~lQ~~---~~~~~~ 216 (219)
T COG4845 162 NKIYGQPIFYAGRFYEEDGK----LTLPLAVQAHHANVDGFHIGQLFDQLQTL---FSPPPC 216 (219)
T ss_pred CccccceeEeecceeccCCe----EEEeEEEEecccccchhhHHHHHHHHHHH---hcCCCC
Confidence 33334444 24554 45899999999999999999999999998 887653
No 99
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.58 E-value=9.4e-05 Score=70.97 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEec
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVE 266 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~ 266 (1045)
.++|+.|++||++++||++|+..+|.||.+|+|.++.-+..+. + +.| ..|+.|...
T Consensus 38 p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~~~ 100 (110)
T TIGR03077 38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQLD 100 (110)
T ss_pred CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEEC
Confidence 5789999999999999999999999999999999996655543 2 233 377777643
No 100
>KOG0369|consensus
Probab=97.51 E-value=0.00012 Score=86.38 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=59.7
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
-|+|+++. |++|++|++||+|+.+..+|+++-|.||.+|+|+++.+..|+.+.-|+.++.++
T Consensus 1114 pG~vieik--vk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIK--VKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEE--EecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 38899999 999999999999999999999999999999999999999999999999998875
No 101
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.48 E-value=0.00026 Score=69.87 Aligned_cols=56 Identities=23% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE---eeCCCCeec---CCC-eEEEEEec
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PLLDIEVE 266 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i---~~~~g~~v~---vG~-~l~~i~~~ 266 (1045)
.++|++|++||+++.||++|+..+|.||.+|+|.++ +....+.+. .|+ .|+.|...
T Consensus 45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 678999999999999999999999999999999999 444445555 665 99999854
No 102
>KOG0238|consensus
Probab=97.47 E-value=8.7e-05 Score=85.56 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=58.6
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
|.|.+++ ||+||.|++||.|+.++.||+...+.||.+|+|+.+.++.|+.|.-|.+|..++
T Consensus 610 G~Iekv~--Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVL--VKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred Ceeeeee--ccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 7899999 999999999999999999999999999999999999999999999999998763
No 103
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.44 E-value=0.00024 Score=68.58 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---ee---cCCC-eEEEEEe
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VA---LVGK-PLLDIEV 265 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v---~vG~-~l~~i~~ 265 (1045)
.++|++|++||++++||++|+..+|.||.+|+|.++.-..-+ .+ +.|. .|+.+..
T Consensus 40 p~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~ 101 (114)
T PRK00624 40 PSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQL 101 (114)
T ss_pred CCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEEE
Confidence 578999999999999999999999999999999999543332 22 2333 7777764
No 104
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.29 E-value=0.00033 Score=67.25 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=36.3
Q ss_pred CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC
Q psy6394 472 TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG 511 (1045)
Q Consensus 472 ~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G 511 (1045)
++|+.|++||++++||++|+..+|.||.+|+|.+++-+..
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 6799999999999999999999999999999999964333
No 105
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.21 E-value=0.00041 Score=69.85 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=57.0
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------cC-CCeE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------LV-GKPL 260 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~v-G~~l 260 (1045)
..+=|-+.+..+- |+|+.+. ..++|++|++||+++.||++|+..+|.||.+|+|.++....-+.. +. ...|
T Consensus 31 ~~vGitd~aq~~l-G~I~~v~-lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl 108 (144)
T PRK13380 31 VTVGITDYAQTMA-GDVVFVR-LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWF 108 (144)
T ss_pred EEEecCHHHHHhc-CCEEEEE-cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeE
Confidence 3455555544432 6677776 235899999999999999999999999999999999988766542 22 3477
Q ss_pred EEEEec
Q psy6394 261 LDIEVE 266 (1045)
Q Consensus 261 ~~i~~~ 266 (1045)
+.+...
T Consensus 109 ~~v~~~ 114 (144)
T PRK13380 109 FRFKPA 114 (144)
T ss_pred EEEEEC
Confidence 777643
No 106
>KOG0368|consensus
Probab=97.16 E-value=0.0005 Score=87.12 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=61.5
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~ 267 (1045)
..|++++|+ |+.|+.|..||+-+|||.|||.|.+.|+.+|+| +...++|+.+..|.+|+.++-++
T Consensus 692 s~GKLl~yl--VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 692 SPGKLLQYL--VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCccceEEE--ecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 579999999 999999999999999999999999999999988 78899999999999999998554
No 107
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.12 E-value=0.00062 Score=65.78 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 472 TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 472 ~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
++|+.|++||++++||++|+..+|.||.+|+|.+++
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 679999999999999999999999999999999995
No 108
>KOG0238|consensus
Probab=97.05 E-value=0.00039 Score=80.32 Aligned_cols=61 Identities=23% Similarity=0.270 Sum_probs=58.3
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
|.|.+.+ |++||.|++||.|+.++.+|+..-+.||.+|+|..+.++.|+.|.-|.+|..++
T Consensus 610 G~Iekv~--Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVL--VKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred Ceeeeee--ccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 5799999 999999999999999999999999999999999999999999999999998763
No 109
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.99 E-value=0.0018 Score=74.21 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.5
Q ss_pred eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence 4799999999999999999999999999999743
No 110
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.96 E-value=0.0023 Score=72.93 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=58.7
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC--------------------------------------------
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------- 230 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------- 230 (1045)
|+.. ..|.|.+++ |++||.|++||+|+++++..
T Consensus 50 i~~~-v~G~V~~v~--V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~ 126 (310)
T PRK10559 50 IAPD-VSGLITQVN--VHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQ 126 (310)
T ss_pred EccC-CceEEEEEE--eCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4444 459999999 99999999999999997621
Q ss_pred --------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 231 --------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 231 --------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
....|.||+||+|.++.+++|+.|..|++++.|...
T Consensus 127 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 127 ANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024789999999999999999999999999998643
No 111
>PRK13380 glycine cleavage system protein H; Provisional
Probab=96.93 E-value=0.0013 Score=66.29 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=42.1
Q ss_pred eEEEEeeeccC-CCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC
Q psy6394 462 VNIKEWNGNVT-EGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG 511 (1045)
Q Consensus 462 g~i~~w~~~v~-~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G 511 (1045)
|.|+.+. +. +|+.|++||+++.||++|+..+|.||.+|+|.+++.+-.
T Consensus 44 G~I~~v~--lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 44 GDVVFVR--LKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred CCEEEEE--cCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 5577776 65 899999999999999999999999999999999975443
No 112
>KOG0368|consensus
Probab=96.85 E-value=0.0013 Score=83.64 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=61.0
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
.-|++++|+ |+.|+.|..||+-++||.||+.|.+.|+.+|+| +...++|+.+.+|++|+.++...+
T Consensus 692 s~GKLl~yl--VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYL--VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEE--ecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence 568999999 999999999999999999999999999999999 555799999999999999986543
No 113
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.84 E-value=0.002 Score=72.96 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=56.6
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 230 (1045)
.+|.|.+++ |++||.|++||+|+.+++.-
T Consensus 33 ~~G~V~~i~--v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~ 110 (322)
T TIGR01730 33 VAGKITKIS--VREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAA 110 (322)
T ss_pred ccEEEEEEE--cCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 459999999 99999999999999997531
Q ss_pred ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
....|.||.+|+|..+.+..|+.+..|++|+.|..
T Consensus 111 ~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 167 (322)
T TIGR01730 111 VEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVD 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence 13479999999999999999999999999999973
No 114
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.76 E-value=0.0046 Score=73.09 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=55.6
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcC------------------------------------------------Cc
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESD------------------------------------------------KA 231 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetd------------------------------------------------Ka 231 (1045)
-.|.|.+.+ .+++||.|++||+|++|++. ..
T Consensus 130 v~G~V~~l~-~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~ 208 (409)
T PRK09783 130 AAGFIDKVY-PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQT 208 (409)
T ss_pred cCEEEEEEE-ecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 358999985 16899999999999999831 11
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
...|.||+||+|.+..+.+|+.|..|++|+.|..
T Consensus 209 ~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d 242 (409)
T PRK09783 209 RFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 242 (409)
T ss_pred cEEEECCCCeEEEEEECCCCCEECCCCeEEEEEc
Confidence 3579999999999999999999999999999963
No 115
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.75 E-value=0.0022 Score=52.77 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=32.1
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
++.|.+|.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 46899999999999999999999999999999843
No 116
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.69 E-value=0.0036 Score=72.30 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=31.4
Q ss_pred eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|.||+||+|.++.+.+|+.|..|++|+.|...
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~ 242 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDT 242 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecC
Confidence 4789999999999999999999999999999744
No 117
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.68 E-value=0.0019 Score=63.74 Aligned_cols=56 Identities=27% Similarity=0.227 Sum_probs=45.6
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------c-CCCeEEEEEec
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------L-VGKPLLDIEVE 266 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~-vG~~l~~i~~~ 266 (1045)
.++|++|++||+++.||++|+..+|.||.+|+|.++.-..-+.. + -...|+.|...
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~ 106 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLS 106 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecC
Confidence 57899999999999999999999999999999999876655431 1 23577777643
No 118
>PRK01202 glycine cleavage system protein H; Provisional
Probab=96.65 E-value=0.0036 Score=61.85 Aligned_cols=56 Identities=23% Similarity=0.192 Sum_probs=45.1
Q ss_pred cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee---CCCCEEe---cC-CceEEEeec
Q psy6394 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY---GEGDVAL---VG-KPLLDIEVE 526 (1045)
Q Consensus 471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~---~~G~~v~---vg-~~l~~i~~~ 526 (1045)
.++|+.|++||+++.||++|+..+|.||.+|+|.+++- ...+.+. -| .-|+.+...
T Consensus 45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 36799999999999999999999999999999999943 3334444 44 377777654
No 119
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.61 E-value=0.0048 Score=70.69 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.5
Q ss_pred eEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence 4799999999999999999999999999999754
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.57 E-value=0.0061 Score=69.42 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=57.1
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ |++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~--V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~ 131 (310)
T PRK10559 54 VSGLITQVN--VHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVL 131 (310)
T ss_pred CceEEEEEE--eCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 469999999 99999999999999998731
Q ss_pred ---------------------eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 491 ---------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 491 ---------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
....|.||++|+|.++.+++|+.|..|++++.|...
T Consensus 132 ~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 132 QTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024688999999999999999999999999988653
No 121
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.55 E-value=0.0052 Score=72.26 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=31.4
Q ss_pred eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|.||+||+|..+.+++|+.|..|++|+.|...
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~ 249 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPA 249 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeC
Confidence 4799999999999999999999999999999743
No 122
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.49 E-value=0.0054 Score=71.92 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=58.3
Q ss_pred ccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC-----------------------------------------
Q psy6394 192 LADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK----------------------------------------- 230 (1045)
Q Consensus 192 ~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK----------------------------------------- 230 (1045)
.-.|+..+ .|.|.+++ +++||.|++||+|+.|++.-
T Consensus 63 ~~~l~~~v-~G~V~~v~--v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~ 139 (385)
T PRK09578 63 QAEVRARV-AGIVTART--YEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSER 139 (385)
T ss_pred EEEEeccC-cEEEEEEE--CCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 33555553 49999999 99999999999999997631
Q ss_pred ------------------------------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394 231 ------------------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV 265 (1045)
Q Consensus 231 ------------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~ 265 (1045)
....|.||+||+|.+.++++|+.|..| ++|+.|..
T Consensus 140 ~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~ 206 (385)
T PRK09578 140 DYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQ 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEe
Confidence 013899999999999999999999985 58888863
No 123
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.48 E-value=0.0043 Score=70.26 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=57.0
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|+.+++.-
T Consensus 33 ~~G~V~~i~--v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~ 110 (322)
T TIGR01730 33 VAGKITKIS--VREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAA 110 (322)
T ss_pred ccEEEEEEE--cCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 458999999 99999999999999997631
Q ss_pred ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
....|.||++|+|..+.+++|+.+..|++|+.|...
T Consensus 111 ~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 111 VEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 134699999999999999999999999999998643
No 124
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.47 E-value=0.0047 Score=50.83 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=32.1
Q ss_pred eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 46789999999999999999999999999999764
No 125
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.37 E-value=0.0062 Score=69.91 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=31.4
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
...|.||+||+|..+.+.+|+.|..|++|+.|..
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~ 236 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSL 236 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEec
Confidence 3589999999999999999999999999999963
No 126
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.28 E-value=0.0051 Score=60.78 Aligned_cols=38 Identities=32% Similarity=0.252 Sum_probs=35.6
Q ss_pred cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee
Q psy6394 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 508 (1045)
Q Consensus 471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~ 508 (1045)
.++|+.|++||+++.||++|+..+|.||.+|+|.+++-
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~ 81 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND 81 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence 36899999999999999999999999999999999864
No 127
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.25 E-value=0.014 Score=69.02 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=55.9
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEecc------------------------------------------------cee
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESD------------------------------------------------KAS 492 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetd------------------------------------------------Ka~ 492 (1045)
.|.|.+.+ .+++||.|++||+|+++++. ...
T Consensus 131 ~G~V~~l~-~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 131 AGFIDKVY-PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred CEEEEEEE-ecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 58888874 16999999999999999831 113
Q ss_pred eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..|.||++|+|.+..+.+|+.|..|++|+.|....
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 57999999999999999999999999999997543
No 128
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.20 E-value=0.012 Score=69.18 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=56.5
Q ss_pred CCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------
Q psy6394 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------- 230 (1045)
Q Consensus 194 ~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------- 230 (1045)
.|..- ..|.|.+++ +++||.|++||+|++|+..-
T Consensus 63 ~l~~~-v~G~V~~i~--v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~ 139 (385)
T PRK09859 63 EIRPQ-VGGIIIKRN--FIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDY 139 (385)
T ss_pred EEecc-CcEEEEEEE--cCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 34444 359999999 99999999999999997530
Q ss_pred ----------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCC--eEEEEE
Q psy6394 231 ----------------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE 264 (1045)
Q Consensus 231 ----------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~--~l~~i~ 264 (1045)
....|.||+||+|.+.++.+|+.|..|+ +|+.|.
T Consensus 140 d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 203 (385)
T PRK09859 140 DTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQ 203 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEE
Confidence 1248999999999999999999999985 688875
No 129
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.20 E-value=0.0085 Score=58.85 Aligned_cols=63 Identities=24% Similarity=0.133 Sum_probs=42.9
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee-------cCCCeEEEEEe
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-------LVGKPLLDIEV 265 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v-------~vG~~l~~i~~ 265 (1045)
|+|+.+. ..++|+.|++|++++.||+.|+..++.||.+|+|.++.-..-+.. .-...|+.|..
T Consensus 31 G~i~~v~-lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~~P~lln~~p~~~gWl~~i~~ 100 (122)
T PF01597_consen 31 GDIVYVE-LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLDNPELLNSDPYGDGWLIKIKP 100 (122)
T ss_dssp -SEEEEE--B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT-TTHHHHSTTTTTEEEEEEE
T ss_pred CceEEEE-EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccccChHHhccCCCCCCeEEEEEe
Confidence 4444443 367899999999999999999999999999999999865443221 12456777764
No 130
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.18 E-value=0.01 Score=68.64 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.1
Q ss_pred eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
...|.||++|+|.++.+++|+.|..|++|+.|...+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 346899999999999999999999999999997543
No 131
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.07 E-value=0.016 Score=68.33 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=56.1
Q ss_pred cCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCC------------------------------------------
Q psy6394 193 ADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------ 230 (1045)
Q Consensus 193 P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------ 230 (1045)
-.|+.. -.|.|.+++ |++||.|++||+|++|+...
T Consensus 66 ~~l~a~-vsG~V~~v~--v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~ 142 (397)
T PRK15030 66 AEVRPQ-VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQE 142 (397)
T ss_pred EEEEec-CcEEEEEEE--cCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 344444 349999999 99999999999999997521
Q ss_pred -----------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCe--EEEEE
Q psy6394 231 -----------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP--LLDIE 264 (1045)
Q Consensus 231 -----------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~--l~~i~ 264 (1045)
....|.||+||+|.+.++++|+.|..|++ |+.|.
T Consensus 143 ~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~ 207 (397)
T PRK15030 143 YDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 207 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEE
Confidence 11378899999999999999999999985 66664
No 132
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=95.95 E-value=0.016 Score=68.03 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=55.6
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|+.+++.-
T Consensus 70 v~G~V~~v~--v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~ 147 (385)
T PRK09578 70 VAGIVTART--YEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVAD 147 (385)
T ss_pred CcEEEEEEE--CCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 458999999 99999999999999998741
Q ss_pred ----------------------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394 491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE 526 (1045)
Q Consensus 491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~ 526 (1045)
....|.||++|+|.+.++++|+.|..| ++|+.|...
T Consensus 148 ~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 148 ERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 124799999999999999999999986 588888643
No 133
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=95.91 E-value=0.019 Score=67.45 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=31.8
Q ss_pred eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..|.||++|+|..+.+++|+.|..|++|+.|....
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 47999999999999999999999999999996543
No 134
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.89 E-value=0.018 Score=67.18 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=28.0
Q ss_pred EEeCCCCeEEEEEeeCCCCeecCCC---eEEEEEe
Q psy6394 234 TITSRYKGTVRKVYYGEGDVALVGK---PLLDIEV 265 (1045)
Q Consensus 234 ~i~s~~~G~v~~i~~~~g~~v~vG~---~l~~i~~ 265 (1045)
.|.||+||+|..+.+..|+.|..|+ +|+.|..
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~ 219 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 219 (370)
T ss_pred EEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence 7999999999999999999997764 6888753
No 135
>PRK12784 hypothetical protein; Provisional
Probab=95.89 E-value=0.038 Score=48.79 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=59.4
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEc-CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
-.|+|-+.+ +.+++.|-+-+.|+-|++ |..-..|.--.+|.|.-+.+.+||.+..+..|+.++.
T Consensus 12 ~~G~Vekif--i~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed 76 (84)
T PRK12784 12 YEGKVEEIF--VNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED 76 (84)
T ss_pred cccEEEEEE--EcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence 368999999 999999999999999999 6777789999999999999999999999999999973
No 136
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=95.88 E-value=0.015 Score=66.75 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=31.7
Q ss_pred eeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 492 ~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
...|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred cCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 35799999999999999999999999999999643
No 137
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.84 E-value=0.016 Score=68.81 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=53.7
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 230 (1045)
..|.|.+++ +++||.|++||+|++|....
T Consensus 94 vsG~V~~i~--v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~ 171 (415)
T PRK11556 94 VDGQLMALH--FQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQAL 171 (415)
T ss_pred ccEEEEEEE--CCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 469999999 99999999999999996521
Q ss_pred ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCCC--eEEEEE
Q psy6394 231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE 264 (1045)
Q Consensus 231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~--~l~~i~ 264 (1045)
....|.||++|+|..+.+.+|+.|..|+ +|+.|.
T Consensus 172 ~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~ 229 (415)
T PRK11556 172 VSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence 0237999999999999999999999984 677764
No 138
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.71 E-value=0.014 Score=57.23 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=54.8
Q ss_pred EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe------ecCC-CeEE
Q psy6394 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV------ALVG-KPLL 261 (1045)
Q Consensus 189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~------v~vG-~~l~ 261 (1045)
.|-|-+.+..+ =|.|+-.. ..++|+.|++|+.++.||+-|+..+|.||.+|+|.++.-..-+. -+.| ..|+
T Consensus 27 tvGiT~~aq~~-lGdiv~Ve-lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~~PeliN~dPyg~gWi~ 104 (131)
T COG0509 27 TVGITDYAQDQ-LGDIVFVE-LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVDSPELINSDPYGEGWIV 104 (131)
T ss_pred EEeCCHHHHHh-cCCEEEEE-cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhcChhhhccCCCCCceEE
Confidence 44444443332 25565554 36789999999999999999999999999999999886554433 2355 4777
Q ss_pred EEEecC
Q psy6394 262 DIEVED 267 (1045)
Q Consensus 262 ~i~~~~ 267 (1045)
.|...+
T Consensus 105 klk~~d 110 (131)
T COG0509 105 KLKPAD 110 (131)
T ss_pred EEeeCC
Confidence 776443
No 139
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.66 E-value=0.026 Score=66.30 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=55.3
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|++++..-
T Consensus 68 v~G~V~~i~--v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~ 145 (385)
T PRK09859 68 VGGIIIKRN--FIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQ 145 (385)
T ss_pred CcEEEEEEE--cCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 358999999 99999999999999998630
Q ss_pred ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCC--ceEEEeec
Q psy6394 491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIEVE 526 (1045)
Q Consensus 491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~--~l~~i~~~ 526 (1045)
....|.||++|+|.+.++.+|+.|..|+ +|+.|...
T Consensus 146 ~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 146 LNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence 1247999999999999999999999985 68877543
No 140
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.51 E-value=0.013 Score=66.64 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=26.0
Q ss_pred EeCCCCeEEE-------------------------EEeeCCCCeecCCCeEEEEEec
Q psy6394 235 ITSRYKGTVR-------------------------KVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 235 i~s~~~G~v~-------------------------~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
|.||++|+|. ++.+.+|+.|..|++|+.|-..
T Consensus 137 i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~ 193 (328)
T PF12700_consen 137 IKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL 193 (328)
T ss_dssp EE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred cccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence 9999999999 9999999999999999999643
No 141
>PRK12784 hypothetical protein; Provisional
Probab=95.51 E-value=0.063 Score=47.45 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=57.6
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEec-cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVES-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vet-dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
.|+|.+.+ +.+++.|-+-++|+.|++ |+.-..|.--.+|.|..+.+.+||.+..+..|++++.
T Consensus 13 ~G~Vekif--i~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~ed 76 (84)
T PRK12784 13 EGKVEEIF--VNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLED 76 (84)
T ss_pred ccEEEEEE--EcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEee
Confidence 58899999 999999999999999999 5556668888999999999999999999999999974
No 142
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=95.45 E-value=0.025 Score=55.51 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=34.3
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.|+.+. =.++|+.+++|++++.||+.|+..++.||++|+|.+++
T Consensus 31 G~i~~v~-lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVE-LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE--B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEE-EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 3344443 14679999999999999999999999999999999986
No 143
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=95.43 E-value=0.039 Score=65.03 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=53.7
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccc--------------------------------------------------
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDK-------------------------------------------------- 490 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK-------------------------------------------------- 490 (1045)
.|.|.+++ +++||.|++||+|++|+...
T Consensus 73 sG~V~~v~--v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~ 150 (397)
T PRK15030 73 SGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADA 150 (397)
T ss_pred cEEEEEEE--cCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 58999999 99999999999999998531
Q ss_pred ---------------------eeeEEecCCCEEEEEEeeCCCCEEecCCc--eEEEee
Q psy6394 491 ---------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP--LLDIEV 525 (1045)
Q Consensus 491 ---------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~--l~~i~~ 525 (1045)
....|.||++|+|.+.++++|+.|..|++ |+.|..
T Consensus 151 ~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 151 QQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence 12468899999999999999999999985 666643
No 144
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=95.35 E-value=0.21 Score=53.55 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=75.5
Q ss_pred ccccCCcceEEEEecC-CceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCccc-cCCCceeeecCCCCCCccee-e
Q psy6394 901 ILVNPDHNISIAIDTK-HGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLPRD-IQGGTISMSNVGNVGGTLVQ-P 976 (1045)
Q Consensus 901 ile~p~v~Igiav~~~-~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~~d-~~ggTftiSNlG~~g~~~~~-~ 976 (1045)
++++..++.+..|-.+ ++...-+.- --.-++.+..+...+.++++++. .+.+.. .....|-+|++=-+.-+.++ +
T Consensus 78 v~~~d~i~ps~Tv~~~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~ 156 (206)
T PF00302_consen 78 VVYYDRIDPSYTVFHKDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHP 156 (206)
T ss_dssp EEEESS-EEEEEEEETTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEE
T ss_pred EEEECCcceeeeEEeCCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceeccccccc
Confidence 3556667777777653 443322211 13447889999999888888774 455443 44567888877655544432 2
Q ss_pred eecCC--ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHH
Q psy6394 977 IIVPR--QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWK 1033 (1045)
Q Consensus 977 iin~p--q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k 1033 (1045)
+-+.+ -..++..|+..++ +| |-+|+|++.+-|.++||.++++|++.|.
T Consensus 157 ~~~~~~~~~P~it~GK~~~~----~g-----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 157 VPNGKDDSIPRITWGKYFEE----NG-----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp ESSTTT-SS-EEEEE--EEE----TT-----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred ccCCCcccccEEEeeeeEeE----CC-----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 22222 2578999998752 33 5789999999999999999999999874
No 145
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=95.28 E-value=0.21 Score=53.99 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhhhhcC-CCCccccCCCceeeecCCCCCCcce-eeeecCC--ceeEEEecceeEEeEEecCceEE
Q psy6394 929 KLSLLDITRELLRIQGCSHEG-KVLPRDIQGGTISMSNVGNVGGTLV-QPIIVPR--QVCIVAFGKIQLLPRFDAEMRVV 1004 (1045)
Q Consensus 929 ~~sl~~ia~~~~~l~~~a~~g-~l~~~d~~ggTftiSNlG~~g~~~~-~~iin~p--q~ail~vG~i~~~pv~~~~~~~~ 1004 (1045)
.-++.+..+...+.++++++. .+-+.....-.|-||.+=-+.-+.+ .++-+.. ...|+..|+..+ ++|
T Consensus 110 ~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~----~~g---- 181 (219)
T PRK13757 110 HDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT----QGD---- 181 (219)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEE----ECC----
Confidence 345566767777777778775 4545444556777776533322221 2222222 235788998764 233
Q ss_pred EEEEEEeeecccccccChHHHHHHHHHHHHhhcC
Q psy6394 1005 AKCILNVTWAADHRVVDGATVARAATLWKSLVEN 1038 (1045)
Q Consensus 1005 ~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~ 1038 (1045)
|-+|+|++.+-|.++||.++++|++.|.+++.+
T Consensus 182 -r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 182 -KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred -EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999876
No 146
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=95.26 E-value=0.039 Score=63.09 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=27.8
Q ss_pred EEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 234 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 234 ~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.|.||+||+|..+.+.+|+.|.. ++|+.|..
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~ 236 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGD 236 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEec
Confidence 68899999999999999999986 88888864
No 147
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.13 E-value=0.04 Score=65.41 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|++|....
T Consensus 94 vsG~V~~i~--v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~ 171 (415)
T PRK11556 94 VDGQLMALH--FQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQAL 171 (415)
T ss_pred ccEEEEEEE--CCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Confidence 468999999 99999999999999996531
Q ss_pred ----------------------eeeEEecCCCEEEEEEeeCCCCEEecCC--ceEEEe
Q psy6394 491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVGK--PLLDIE 524 (1045)
Q Consensus 491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~--~l~~i~ 524 (1045)
....|.||++|+|..+.++.|+.|..|+ +|+.|.
T Consensus 172 ~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~ 229 (415)
T PRK11556 172 VSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVIT 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEe
Confidence 0237999999999999999999999985 566664
No 148
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.11 E-value=0.05 Score=63.45 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=27.8
Q ss_pred EEecCCCEEEEEEeeCCCCEEecCC---ceEEEee
Q psy6394 494 TITSRYKGTVRKVYYGEGDVALVGK---PLLDIEV 525 (1045)
Q Consensus 494 ei~ap~~G~v~~i~~~~G~~v~vg~---~l~~i~~ 525 (1045)
.|.||++|+|..+.+..|+.|..|+ +|+.|..
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~ 219 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 219 (370)
T ss_pred EEECCCCcEEEeeecCCCcEeecccCCceEEEEec
Confidence 7999999999999999999997764 6887754
No 149
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=94.90 E-value=0.028 Score=55.26 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=34.9
Q ss_pred cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
.++|++|++|+.++.||+-|+..+|.||.+|.|.+++
T Consensus 47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 5788999999999999999999999999999998885
No 150
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.51 E-value=0.099 Score=57.17 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=51.3
Q ss_pred EEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecCc
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
+.+.. ++.||.|++||+|+.|+. .+|.||.+|+|..+. ++|-.|..|--|+.|+...+
T Consensus 174 i~~~~--~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli-rdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 174 IVTPT--KAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI-HEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred EEeec--cCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe-cCCCCcCCCCEEEEECCCCC
Confidence 44557 999999999999999975 799999999998885 99999999999999986653
No 151
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=94.32 E-value=0.092 Score=50.57 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred cHHHHHHhhcCCC-C-c-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHH-HHHHHhc
Q psy6394 3 NVLSVSRSLRSIC-K-T-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEV-LLDTILG 78 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-~-~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~-~l~~il~ 78 (1045)
+++.+..|..... . . |+|+|....+. +++|+..+||+...+.........+.. +..+.++
T Consensus 12 vll~i~~h~~r~~~~~v~G~LlG~~~~~~----------------~v~I~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~ 75 (114)
T PF01398_consen 12 VLLKIIDHATRSSPNEVIGLLLGTQDGDN----------------TVEITNSFPVPHSESEDDCDMDDEDFQKKMIELLK 75 (114)
T ss_dssp HHHHHHHHHHHHHCTEEEEEEEEEEETT-----------------EEEEEEEEEESEEEESSEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEEEEecCce----------------EEEEEEEEEeeEecCccccccchhhHHHHHHhhhc
Confidence 3556666665533 4 3 99999876543 677888888875432222122222222 3333433
Q ss_pred cC--CCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394 79 EF--KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF 113 (1045)
Q Consensus 79 ~~--~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~ 113 (1045)
.. +-.+||||.=--+..--||-.+.-+|++++.+.
T Consensus 76 ~~~~~~~iVGWY~s~p~~~~~~S~~di~~q~~~q~~~ 112 (114)
T PF01398_consen 76 KVNPNLEIVGWYHSHPNISCFPSPTDIETQKQYQRMN 112 (114)
T ss_dssp HCSTTSEEEEEEEEESSS-SS--HHHHHHHHHHHHHT
T ss_pred cccccceEEEEEEccCCccccCCHHHHHHHHHHHHhC
Confidence 32 356999999887777888999999998887764
No 152
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic. This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import
Probab=94.07 E-value=0.28 Score=50.23 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=62.4
Q ss_pred cHHHHHHhhcCCC----Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh
Q psy6394 3 NVLSVSRSLRSIC----KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL 77 (1045)
Q Consensus 3 ~~~~~~~~~~s~~----~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il 77 (1045)
+++.+..|..... .. |.|||... ..+++|++.+||+.-. -+..-.++.+-+++.+
T Consensus 7 vll~I~dh~~R~~~~~~~v~G~LlG~~~-----------------~~~veV~nsF~lp~~~---~~~~~~~d~~y~~~m~ 66 (157)
T cd08057 7 VLLNISDHYTRRKYGIKRVIGVLLGYVD-----------------GDKIEVTNSFELPFDE---EEESIFIDTEYLEKRY 66 (157)
T ss_pred HHhhHHHHHHhccCCCCeEEEEEEeEEe-----------------CCEEEEEEeEEccccC---CCcchhhhHHHHHHHH
Confidence 3555665543332 33 99999762 2357788999998311 0111145655555444
Q ss_pred ccCC-----CceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394 78 GEFK-----ADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV 130 (1045)
Q Consensus 78 ~~~~-----k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~ 130 (1045)
.-.+ ..+||||.--.+...-++-.+..||.+|... .....+++++.++.
T Consensus 67 ~~~~~v~~~~~vVGWY~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~v~L~~D~~~ 120 (157)
T cd08057 67 NLHKKVYPQEKIVGWYSIGSNNSNEISKSDNSLHSQFSLI----SEENPLILILDPSL 120 (157)
T ss_pred HHHHHhCCCCCEEEEEeecCCCCCCCChhHHHHHHHHHhc----cCCCCEEEEEcCCc
Confidence 4332 4599999877654445677889999777765 12334677777654
No 153
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.01 E-value=0.16 Score=55.68 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=48.2
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEecC
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~~ 267 (1045)
+.. ++.||.|++||+|+.|.. .+|.||.+|+|.-+ +++|-.|..|.-|+.|+.-+
T Consensus 176 ~~~--~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 176 TPT--KAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG 230 (256)
T ss_pred eec--cCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence 446 999999999999999975 79999999999665 67999999999999998544
No 154
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=93.21 E-value=0.19 Score=55.40 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=31.0
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.+.|.||+||+|..+.+.+|+.|..|++|+.|..
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 3468999999999999999999999999999863
No 155
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=92.71 E-value=0.14 Score=48.53 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 249 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~ 249 (1045)
.+-. |++||+|++||.|++.+. -....|-|+.+|+|.+|.-.
T Consensus 42 ~~p~--V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 42 AEPV--VKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred ceEE--EcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 3456 999999999999999974 66889999999999998543
No 156
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=92.49 E-value=0.73 Score=48.73 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCCc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCcc---HHHHHHHhc
Q psy6394 4 VLSVSRSLRSICKT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLN---EVLLDTILG 78 (1045)
Q Consensus 4 ~~~~~~~~~s~~~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~---~~~l~~il~ 78 (1045)
++.+..|..+...+ |+|+|.... + ...+.|+..+||.... . .-...++ ..++.+.+.
T Consensus 14 ll~m~~Ha~~~~~EvcGlL~G~~d~---------~------~~~l~Vt~~~p~~~~~-~--~~~~e~dp~~q~e~~~~l~ 75 (187)
T cd08067 14 LLLMDFHCHLTTSEVIGYLGGTWDP---------N------TQNLTILQAFPCRSRL-T--GLDCEMDPVSETEIRESLE 75 (187)
T ss_pred HHHHHHHhcCCCcEEEEEEEeEEcC---------C------CCeEEEEEEEecCCCC-C--CcccccCHHHHHHHHHHHH
Confidence 34444444444455 999998421 1 2245678999998643 1 1112222 345556677
Q ss_pred cCCCceeEEEEeecccccccchhhHHHHhhhhhhhhc--CCcccEEEEEeeccc
Q psy6394 79 EFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSH--IPKQLFLFFRISTNV 130 (1045)
Q Consensus 79 ~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~--~~~~~~~~~l~t~~~ 130 (1045)
++.-++||||.---...-.||.++.--+.++|.++.. -....|+.+.+.+-.
T Consensus 76 ~~gl~vVGwYHSHP~~~~~pS~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~ 129 (187)
T cd08067 76 SRGLSVVGWYHSHPTFPPNPSLRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYD 129 (187)
T ss_pred HcCCEEEEEEecCCCCCcCCCHHHHHHHHHHHhhccccccCCCCeEEEEEcccc
Confidence 7777899999998888899999997777666776642 345667777776544
No 157
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=92.30 E-value=0.37 Score=56.16 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.4
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.|-+.+++ +++||.|++||+|++|=. +....+|.||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~--~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYR--AAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEe--cCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence 46778888 999999999999999843 455666899999998654 445578888888876
No 158
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.20 E-value=0.45 Score=53.72 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=45.3
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc--CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
+-+.++. ++.||.|++||+|++|-. .....+|.||.+|+|.-+ ...-.|..|+.|+.|
T Consensus 227 ~G~~~~~--~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSL--VKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEe--cCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence 4566778 999999999999999954 233478999999999544 445568888888865
No 159
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=92.17 E-value=0.2 Score=47.61 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=37.4
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.-.+-+ |++||.|++||.|++.+. -....|.||.+|+|.+|.
T Consensus 39 G~~~~p~--V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 39 GAPAEPV--VKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCcceEE--EcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 4455677 999999999999999975 668899999999999985
No 160
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.82 E-value=0.51 Score=53.55 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=48.2
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc---CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.+-+.+.+ +++||.|++||+|++|=. +....+|.||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 236 ~~Gl~~~~--~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 236 TSGIFVPA--KHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred CCeEEEEC--cCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 35667777 999999999999999843 5678899999999996654 44578889988876
No 161
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J
Probab=91.02 E-value=1.4 Score=42.03 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=56.5
Q ss_pred HHHHhhcCC-C-Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHH---HHHhcc
Q psy6394 6 SVSRSLRSI-C-KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLL---DTILGE 79 (1045)
Q Consensus 6 ~~~~~~~s~-~-~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l---~~il~~ 79 (1045)
.++++..++ . .. |+|+|.... + ++.|...+++++.. .....+...+ ......
T Consensus 3 ~il~~a~~~~~~ev~G~L~G~~~~------------~-----~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 60 (116)
T cd07767 3 MFLDAAKSINGKEVIGLLYGSKTK------------K-----VLDVDEVIAVPFDE-----GDKDDNVWFLMYLDFKKLN 60 (116)
T ss_pred hHHHHHhcCCCcEEEEEeEEEEcC------------C-----EEEEEEEEecccCC-----CCCccHHHHHHHHHHHHhc
Confidence 567777775 3 44 999997321 1 34455666665322 1112222222 222223
Q ss_pred CCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394 80 FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV 130 (1045)
Q Consensus 80 ~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~ 130 (1045)
..-.+||||.-.-+..-.+|..+...|..++.. .++ .+++++....
T Consensus 61 ~~~~iVGwyhshp~~~~~~s~~dv~~~~~~q~~---~~~--~v~li~~~~~ 106 (116)
T cd07767 61 AGLRIVGWYHTHPKPSCFLSPNDLATHELFQRY---FPE--KVMIIVDVKP 106 (116)
T ss_pred CCCeEEEEEEcCCCCCCccCHHHHHHHHHHHHh---CCC--CEEEEEECCC
Confidence 345799999987777778999998888655543 333 3555555444
No 162
>smart00232 JAB_MPN JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.
Probab=90.40 E-value=2.2 Score=41.78 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=52.9
Q ss_pred cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC-CccHH---HHHH
Q psy6394 3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG-TLNEV---LLDT 75 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g-~i~~~---~l~~ 75 (1045)
++..++.+..+.. .+ |+|+|..... .+.|...+||+... -+..- .++.+ .+.+
T Consensus 8 v~~~i~~h~~~~~p~e~~G~L~G~~~~~-----------------~~~i~~~~~~p~~~---~~~~~~~~~~~~~~~~~~ 67 (135)
T smart00232 8 VPLNILKHAIRDGPEEVCGVLLGKSNKD-----------------RPEVKEVFAVPNEP---QDDSVQEYDEDYSHLMDE 67 (135)
T ss_pred HHHHHHHHHhcCCCcEEEEEEEEEEcCC-----------------EEEEEEEEecCcCC---CCcchhhhhhhHHHHHHH
Confidence 3455666776655 33 9999984321 25566777776321 11110 22322 2222
Q ss_pred Hhcc--CCCceeEEEEeecccccccchhhHHHHhhhhh
Q psy6394 76 ILGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSN 111 (1045)
Q Consensus 76 il~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~ 111 (1045)
.+.. ..-++||||.-.-+....||.++..+|..+..
T Consensus 68 ~~~~~~~~~~~vGwyhshp~~~~~pS~~D~~~~~~~~~ 105 (135)
T smart00232 68 ELKKVNKDLEIVGWYHSHPDESPFPSEVDVATHESYQA 105 (135)
T ss_pred HHHhhCCCceEEEEEEcCCCCCCCcCHHHHHHHHHHHh
Confidence 2222 23469999999999999999999999955443
No 163
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=90.16 E-value=0.72 Score=52.40 Aligned_cols=87 Identities=25% Similarity=0.410 Sum_probs=49.3
Q ss_pred cHHHHHHhhcCCC-----Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC--CccHHHHH
Q psy6394 3 NVLSVSRSLRSIC-----KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG--TLNEVLLD 74 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-----~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g--~i~~~~l~ 74 (1045)
+++++..|..... .. |-|||... + ..|+|++.+||+--. --+..+ .+|.+-++
T Consensus 14 Vll~I~dh~~R~~~~~~~rviG~LLG~~~------------~-----~~ieItnsF~~p~~e--~~~~~~~~~~D~~y~~ 74 (303)
T PLN03246 14 VLLSIVDHYNRVAKDTRKRVVGVLLGSSF------------R-----GRVDVTNSFAVPFEE--DDKDPSIWFLDHNYLE 74 (303)
T ss_pred HHHHHHHHHHhccCCCCCeeEEEEEeeec------------C-----CEEEEEeccccCccc--CCCCccceeecHHHHH
Confidence 4556666554332 24 99999742 1 267899999998210 011111 26654444
Q ss_pred HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhh
Q psy6394 75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNY 112 (1045)
Q Consensus 75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~ 112 (1045)
+.+.-. +..+||||.=- ..++=.+..||+.|...
T Consensus 75 ~m~~~~k~V~~~~~vVGWY~tg----~~i~~~d~~IH~~~~~~ 113 (303)
T PLN03246 75 SMFGMFKRINAKEHVVGWYSTG----PKLRENDLDIHELFNDY 113 (303)
T ss_pred HHHHHHHHhCCCCcEEeeecCC----CCCCcchHHHHHHHHhh
Confidence 433332 24599999733 33444678999766654
No 164
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=89.61 E-value=0.91 Score=52.19 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=46.9
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.+-+.... ++.||.|++||+|++|=. .....+|.||.+|+|.-+.. .-.|..|+.|+.|
T Consensus 262 ~~Gi~~~~--v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~--~~~V~~Gd~l~~i 324 (325)
T TIGR02994 262 DDGLIEFM--IDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHF--PGLIKSGDCIAVL 324 (325)
T ss_pred CCeEEEEe--cCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeC--CCccCCCCEEEEe
Confidence 35566777 999999999999999843 34577899999999977543 4568888888875
No 165
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=89.56 E-value=1.1 Score=50.31 Aligned_cols=98 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred cHHHHHHhhcCC-----CCc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccC--CCCccHHHHH
Q psy6394 3 NVLSVSRSLRSI-----CKT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSK--DGTLNEVLLD 74 (1045)
Q Consensus 3 ~~~~~~~~~~s~-----~~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~--~g~i~~~~l~ 74 (1045)
+++++..|.... ... |.|||... ..+++|++.++|+.-. --+. ...+|.+-+.
T Consensus 9 VLl~I~dh~~R~~~~~~~~ViG~LLG~~~-----------------~~~veItnsF~~p~~~--~~~~~~~~~~d~~y~~ 69 (280)
T cd08062 9 VLLSVVDHYNRVAKGTSKRVVGVLLGSWK-----------------KGVLDVTNSFAVPFEE--DEKDPSVWFLDHNYLE 69 (280)
T ss_pred HHHHHHHHHhhhcCCCCceEEEEEEEEEe-----------------CCEEEEEEeeecCccC--CCCCcchhhhhHHHHH
Confidence 466777776432 134 99999754 1367888999998211 0001 1135555554
Q ss_pred HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeec
Q psy6394 75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRIST 128 (1045)
Q Consensus 75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~ 128 (1045)
+.+.-. +..+||||.--. .++=.+..||+.|+..- ++ .+|+++.+
T Consensus 70 ~m~~~~kkv~~~e~vVGWY~tg~----~~~~~d~~ih~~~~~~~---~~--pv~l~vd~ 119 (280)
T cd08062 70 NMYGMFKKVNAKEKIVGWYSTGP----KLRPNDLDINELFRRYC---PN--PVLVIIDV 119 (280)
T ss_pred HHHHHHHHhCCCCCeEEEecCCC----CCCcchHHHHHHHHHhC---CC--CEEEEEec
Confidence 443322 245999997442 23445679996665533 22 34555554
No 166
>COG3608 Predicted deacylase [General function prediction only]
Probab=89.46 E-value=0.64 Score=52.94 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEc---CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
.++-+++.+ |+.||.|++||+|+.|=. -+..+||.|+.+|+|..+... -.++.|+.++.+
T Consensus 262 p~~G~v~~~--v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~--~~v~~Gdl~~~v 324 (331)
T COG3608 262 PAGGLVEFL--VDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL--RLVQPGDLLKVV 324 (331)
T ss_pred CCCceEEEe--ecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec--cccCCCCeeeee
Confidence 467788999 999999999999998855 589999999999999877532 134455555444
No 167
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.46 E-value=1 Score=51.12 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=47.9
Q ss_pred EEEEeeeccCCCCeeccCCeEeEEec---cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 463 NIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 463 ~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
=+...+ ++.||.|++||.|++|=. +....++.||.+|+|..+ ...-.|..|+.|+.|
T Consensus 238 Gl~~~~--~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i 297 (298)
T cd06253 238 GIFVPA--KHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEC--cCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence 377888 999999999999999854 566789999999999776 466778888888875
No 168
>PF13437 HlyD_3: HlyD family secretion protein
Probab=89.09 E-value=0.58 Score=44.09 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=29.7
Q ss_pred EEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 234 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 234 ~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
+|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 478999999999999999999999999999744
No 169
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.85 E-value=1.4 Score=50.54 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=47.2
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.+-+.... ++.||.|++||+|++|=. .....+|.||.+|+|.-+.. .-.|..|++|+.|-
T Consensus 251 ~~G~~~~~--~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPL--VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGLVRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEe--cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCccCCCCEEEEEe
Confidence 35677888 999999999999999854 34567899999999975543 34578888888773
No 170
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=88.67 E-value=3 Score=40.62 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=62.3
Q ss_pred cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh--
Q psy6394 3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL-- 77 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il-- 77 (1045)
+++.+..|..+.. .+ |+|+|....+ ......++|....||+.. .+ + .+-++.++
T Consensus 2 ~~~~i~~ha~~~~p~E~cGlL~G~~~~~------------~~~~~~~~v~~~~p~~~~----~~--~---~~~~~~~~~~ 60 (119)
T cd08058 2 ALLKMLQHAESNTGIEVMGLLCGELTHN------------EFTDKHVIVPKQSAGPDS----CT--G---ENVEELFNVQ 60 (119)
T ss_pred HHHHHHHHhcCCCCeEEEEEeeeEEecC------------ccceeEEEEeecCCCCCC----ch--h---HHHHHHHHHH
Confidence 3556667777764 33 9999986322 112345567777787731 22 1 22233333
Q ss_pred ccCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394 78 GEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV 130 (1045)
Q Consensus 78 ~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~ 130 (1045)
.+...++||||.---...-.||-++...+.+++.. + +.++++.+.+..
T Consensus 61 ~~~g~~~vG~YHSHP~~~~~pS~~Di~~~~~~q~~---~--p~~~~lI~s~~~ 108 (119)
T cd08058 61 TGRPLLVVGWYHSHPTFTAWLSSVDIHTQASYQLM---L--PEAIAIVVSPKH 108 (119)
T ss_pred hCCCCeEEEEEecCCCCCCccCHHHHHHHHHHhcc---C--CCeEEEEECcCC
Confidence 44457799999999888889999997766444333 2 455666666533
No 171
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=88.66 E-value=1.2 Score=50.39 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=44.4
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec--cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
+.++. ++.||.|++||+|++|-. .....+|.||.+|+|..+ ...-.|..|+.++.|
T Consensus 229 ~~~~~--~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i 286 (287)
T cd06251 229 LLRSL--VKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI 286 (287)
T ss_pred EEEEe--cCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence 56778 999999999999999954 233478999999999665 455667777777765
No 172
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=88.48 E-value=0.62 Score=51.29 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=34.0
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCc--eeEEeCCCCeEEEEEeeCC
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKA--SVTITSRYKGTVRKVYYGE 250 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa--~~~i~s~~~G~v~~i~~~~ 250 (1045)
+.+ |+|||+|+.||+|++ ||- .+-+.||.+|+|.+|..-+
T Consensus 42 km~--VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 42 KML--VKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred cEE--eccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 556 999999999999998 665 4668899999999998743
No 173
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=87.51 E-value=0.51 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=24.5
Q ss_pred eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|.++..|+|.+|+|++|+.|+.|++|+.|+..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 5789999999999999999999999999999843
No 174
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=87.30 E-value=1.5 Score=51.15 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=46.6
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
+=+.+++ ++.||.|++||.|++|-. +....+|.||.+|+|..+ ...-.|..|+.|+.|
T Consensus 297 ~Gl~~~~--~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~V~~G~~l~~I 358 (359)
T cd06250 297 GGMVVYR--AAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRFVRAGDELAKI 358 (359)
T ss_pred CeEEEEe--cCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCccccCCCeEEEe
Confidence 3478888 999999999999999854 344555799999999766 566778888888766
No 175
>PF13437 HlyD_3: HlyD family secretion protein
Probab=87.12 E-value=0.82 Score=43.07 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=30.3
Q ss_pred EEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 494 TITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 494 ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+|.||++|+|..+.+++|+.+..|++|+.|...
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 478999999999999999999999999999754
No 176
>COG3608 Predicted deacylase [General function prediction only]
Probab=86.75 E-value=1.5 Score=50.03 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=46.3
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEec---cceeeEEecCCCEEEEEEe----eCCCC
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVES---DKASVTITSRYKGTVRKVY----YGEGD 512 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vet---dKa~~ei~ap~~G~v~~i~----~~~G~ 512 (1045)
..-+..|.-| +++.+ ++.||.|++||.|+.|=. -+...||.|+.+|+|..+. ++.||
T Consensus 256 ~~~i~Ap~~G-------~v~~~--v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gd 319 (331)
T COG3608 256 DEMIRAPAGG-------LVEFL--VDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGD 319 (331)
T ss_pred cceeecCCCc-------eEEEe--ecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCC
Confidence 3446666654 88999 999999999999998866 4899999999999998874 45553
No 177
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=85.85 E-value=1.8 Score=49.75 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=45.5
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
+.... ++.||.|++||+|++|=. .....+|.||.+|+|..+ ...-.|..|+.|+.|
T Consensus 265 i~~~~--v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~--~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 265 LIEFM--IDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR--HFPGLIKSGDCIAVL 324 (325)
T ss_pred EEEEe--cCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE--eCCCccCCCCEEEEe
Confidence 77788 999999999999999854 335678999999999876 455667777777765
No 178
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=85.46 E-value=0.74 Score=51.62 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=24.8
Q ss_pred eEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..|.++..|+|.+|+|++|+.|+.|++|+.|+...
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 57899999999999999999999999999998643
No 179
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=85.45 E-value=1.1 Score=51.25 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=35.9
Q ss_pred EEEcCCceeEEeCCCC---eEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 225 EVESDKASVTITSRYK---GTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 225 ~vetdKa~~~i~s~~~---G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.|+..--.+.|.++.+ |+|.+|++++||.|+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 4444444668899999 99999999999999999999999854
No 180
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=85.20 E-value=1.8 Score=48.86 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=39.2
Q ss_pred EEEEeeeEeCCccccccccCCCCccHHHHHHHhccCC-----CceeEEEEeecccccccchhhHHHHhhhhhh
Q psy6394 45 TVSITATLPFSESEDLLFSKDGTLNEVLLDTILGEFK-----ADVVGWYSFTRNQDLSQSLCQLFLAHHFSNY 112 (1045)
Q Consensus 45 ~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il~~~~-----k~viGWyrfRrns~~~~s~re~~~h~~~~~~ 112 (1045)
.++|++.++|+--.+. +..-.+|.+-+++.+.-.+ ..+||||.=--+ -++-.+..||++|..+
T Consensus 43 ~veItnsF~~p~~~~~--~~~~~id~~y~~~m~~~~kkV~~~~~vVGWY~tg~~---~~~~~~~~Ih~~~~~~ 110 (288)
T cd08063 43 EIEIENSFELKYDTNE--DGEIVLDKEFLETRLEQFKQVFKDLDFVGWYTTGPG---GPTESDLPIHKQILEI 110 (288)
T ss_pred EEEEEEEEecccccCC--CCceeeCHHHHHHHHHHHHHhccCCceEEEEecCCC---CCCHHHHHHHHHHHhh
Confidence 4788999999821111 1223566655554443332 359999976544 2667889999887754
No 181
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=85.08 E-value=2.5 Score=48.46 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=45.5
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
+.... ++.||.|++||+|++|-. .....+|.||.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 254 ~~~~~--~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 254 LFEPL--VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEe--cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 77888 999999999999999855 3556789999999997664 345577777777663
No 182
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=85.06 E-value=0.92 Score=51.45 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=29.8
Q ss_pred eEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 222 VVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 222 ~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.-..|+. .+..|.++.+|.| ++++++|+.|+.|++|+.++..
T Consensus 13 ~~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 13 ASGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 3455665 5788999999999 9999999999999999999854
No 183
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=84.93 E-value=2 Score=48.51 Aligned_cols=56 Identities=14% Similarity=0.069 Sum_probs=41.8
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc--CCceeEEeCCCCeEEEEEeeCCCCeecCCCeE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPL 260 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l 260 (1045)
.+-+.+.+ ++.||.|++||+|++|=. .....+|.||+||+|.-+... -.|..|++|
T Consensus 230 ~~G~~~~~--~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPF--VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LPVRKGDPL 287 (288)
T ss_pred CCeEEEEe--cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--CccCCCCcc
Confidence 45677888 999999999999999832 344678999999999766442 345555554
No 184
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=84.17 E-value=1.7 Score=44.12 Aligned_cols=47 Identities=32% Similarity=0.192 Sum_probs=34.3
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeE-EeCCCCeEEEEEee
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVYY 248 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~-i~s~~~G~v~~i~~ 248 (1045)
.||..+-.. +.+||.|.+||.|+-+.|-|-++. +.||.+|+|.-+.=
T Consensus 87 veG~~v~~i--~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 87 VEGYQVYPI--VDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp EESSEEEES--S-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred ecceEEEEE--cccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 356666667 899999999999999999999986 99999999976643
No 185
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=83.68 E-value=1.8 Score=43.94 Aligned_cols=45 Identities=33% Similarity=0.235 Sum_probs=34.3
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeE-EecCCCEEEEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVY 507 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~e-i~ap~~G~v~~i~ 507 (1045)
||..+-.. +.+||.|.+||.|+-+.|-|-.+. +.||++|+|.-+.
T Consensus 88 eG~~v~~i--~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPI--VDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEES--S-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEE--cccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 56667778 999999999999999999999887 8999999997775
No 186
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al
Probab=83.24 E-value=9.9 Score=39.76 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=40.8
Q ss_pred cHHHHHHHhccCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeecc
Q psy6394 69 NEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTN 129 (1045)
Q Consensus 69 ~~~~l~~il~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~ 129 (1045)
+.+...+.+....-.+||||.-.-++.-.||-.|...|.+++... ..++++.+.+.
T Consensus 62 ~~~e~~~~~~~~gle~vGwyHSHP~~~~~pS~~Dv~t~~~~~~~~-----p~~~~lIvSp~ 117 (173)
T cd08066 62 NEEELFDFQDQHDLITLGWIHTHPTQTCFLSSVDLHTHCSYQLML-----PEAIAIVCAPK 117 (173)
T ss_pred CHHHHHHHHHhCCCeeEEEEeccCCCCCccCHHHHHHHHHHHhcC-----CCeEEEEECCC
Confidence 333344455566678999999999999999999999996665542 45666666653
No 187
>KOG3373|consensus
Probab=82.63 E-value=0.91 Score=45.99 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD 252 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~ 252 (1045)
=++|-.|.+||.++.+|+=|+.-+|.+|.+|.|.+|.-+-.+
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 478999999999999999999999999999999999766544
No 188
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=82.21 E-value=1.6 Score=49.53 Aligned_cols=38 Identities=34% Similarity=0.466 Sum_probs=32.9
Q ss_pred CCCCCeecCCCeEEEEEcCCc--eeEEeCCCCeEEEEEeeCCC
Q psy6394 211 VTEGARINEFDVVCEVESDKA--SVTITSRYKGTVRKVYYGEG 251 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa--~~~i~s~~~G~v~~i~~~~g 251 (1045)
|++||.|++||+|+| ||- -+-++||.+|+|..|.-.+-
T Consensus 45 V~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~K 84 (447)
T COG1726 45 VREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGEK 84 (447)
T ss_pred eccCCeeeccceeee---cccCCCeEEeccCCceEEEeecccc
Confidence 999999999999998 553 57899999999999986543
No 189
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=81.17 E-value=2.2 Score=50.37 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=37.8
Q ss_pred EEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 224 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 224 ~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|........|.++.+|+|.+++|++||.|+.|++|+.++..
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~ 77 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDAT 77 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccc
Confidence 4566677778899999999999999999999999999999854
No 190
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=80.58 E-value=2.1 Score=51.29 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=35.9
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEee
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~ 248 (1045)
|.--+-. |++||+|+.||+|++-... ..+.+.||.+|+|++|..
T Consensus 38 G~~~k~~--Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMK--VRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceE--eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 3334567 9999999999999986543 578899999999999953
No 191
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=80.43 E-value=2.6 Score=50.19 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=32.3
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 45899999999999999999999999999999854
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.18 E-value=2.6 Score=50.71 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 229 DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 229 dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
+.-...|.++..|+|.+|+|++||.|+.|++|+.++..
T Consensus 56 ~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 56 AKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred cCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 33356788999999999999999999999999999744
No 193
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=79.98 E-value=3 Score=46.01 Aligned_cols=43 Identities=33% Similarity=0.410 Sum_probs=34.6
Q ss_pred EEEeeeccCCCCeeccCCeEeEEecccee--eEEecCCCEEEEEEeeCCCCE
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVESDKAS--VTITSRYKGTVRKVYYGEGDV 513 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vetdKa~--~ei~ap~~G~v~~i~~~~G~~ 513 (1045)
.-+.+ |++||+|+.||+|++ ||-. +-+.||.+|+|.+|.. |+.
T Consensus 40 ~Pkm~--VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r 84 (257)
T PF05896_consen 40 KPKML--VKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER 84 (257)
T ss_pred CccEE--eccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence 45777 999999999999985 5443 4478999999999975 554
No 194
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=79.93 E-value=5.3 Score=44.62 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=50.1
Q ss_pred cHHHHHHhhcCC---C-Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh
Q psy6394 3 NVLSVSRSLRSI---C-KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL 77 (1045)
Q Consensus 3 ~~~~~~~~~~s~---~-~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il 77 (1045)
+++++..|.... . .. |.|||.... ..++|++.+||+.-. -...-.+|.+-+.+.+
T Consensus 7 Vll~I~dH~~R~~~~~~~V~G~LLG~~~~-----------------~~veItnsF~~p~~~---~~~~~~~d~~y~~~m~ 66 (265)
T cd08064 7 VLFSILDSYERRNEGQERVIGTLLGTRSE-----------------GEVEITNCFAVPHNE---SEDQVAVDMEYHRTMY 66 (265)
T ss_pred HHHhHHHHHhhhcCCCcEEEEEEEEEEeC-----------------CEEEEEeCeecceeC---CCCeEEEcHHHHHHHH
Confidence 456677665442 2 33 999997641 357788999997211 1112235544444333
Q ss_pred ccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394 78 GEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF 113 (1045)
Q Consensus 78 ~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~ 113 (1045)
.-. +..+||||.=-. .++=.+..||.+|+..-
T Consensus 67 ~~~kkv~~~~~vVGWY~tg~----~~~~~~~~Ih~~~~~~~ 103 (265)
T cd08064 67 ELHQKVNPKEVIVGWYATGS----EITEHSALIHDYYSREC 103 (265)
T ss_pred HHHHHhCCCCcEEeeeeCCC----CCCccHHHHHHHHHhhC
Confidence 322 345999997643 23334789998877654
No 195
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=79.27 E-value=13 Score=41.77 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=52.5
Q ss_pred cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccH---HHHHH-
Q psy6394 3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNE---VLLDT- 75 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~---~~l~~- 75 (1045)
+++.++.|..+.. .+ |+|+|.+. ..++.|+..+|++..- ....-..+. +.+.+
T Consensus 18 allkil~Ha~~~~p~Ev~GlLlG~~~-----------------~~~v~Vt~~fp~p~~~---t~~~v~~~~e~~~~m~~~ 77 (268)
T cd08069 18 ALLKMLKHARAGGPIEVMGLMLGKVD-----------------DYTIIVVDVFALPVEG---TETRVNAQDEFQEYMVQY 77 (268)
T ss_pred HHHHHHHHHhccCCceEEEEEEeeec-----------------CCeEEEEEEEECCcCC---CCCceeccHHHHHHHHHH
Confidence 3555666666654 33 99999842 1246677888987321 111111222 23333
Q ss_pred -Hhcc--CCCceeEEEEeecccccccchhhHHHHhhhhh
Q psy6394 76 -ILGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSN 111 (1045)
Q Consensus 76 -il~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~ 111 (1045)
.++. +..++||||.---...-.||-.+...|..++.
T Consensus 78 ~~~~~~~~~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~ 116 (268)
T cd08069 78 EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQ 116 (268)
T ss_pred HHHHHhCCCceeEeeeccCCCcCCcCCHHHHHHHHHHHh
Confidence 4333 23679999987766667788888888755444
No 196
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.07 E-value=2.7 Score=50.03 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=33.7
Q ss_pred cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 489 DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 489 dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..-...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~ 92 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP 92 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence 33355899999999999999999999999999999764
No 197
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=78.79 E-value=2.5 Score=50.69 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=34.3
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEee
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~ 248 (1045)
-+-. |++||+|++||.|++-..+ .++.+.||.+|+|++|..
T Consensus 42 ~~~~--V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 42 PKMK--VKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CceE--eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 3456 9999999999999975544 468899999999999954
No 198
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=78.67 E-value=5.7 Score=45.03 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=34.4
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc--CCceeEEeCCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKV 246 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~~i~s~~~G~v~~i 246 (1045)
.+-+.+.. ++.||.|++||+|++|-. .....++.||.+|+|.-+
T Consensus 238 ~~Gi~~~~--~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 238 HGGLFEPS--VPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CCeEEEEe--cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 35667777 899999999999999843 222567899999999776
No 199
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.50 E-value=2.7 Score=49.54 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=38.5
Q ss_pred eEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 484 CEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 484 ~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
+.|........|.++.+|+|.+++|++||.|+.|++|+.++...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 45667777788999999999999999999999999999997643
No 200
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=78.05 E-value=32 Score=36.66 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=80.4
Q ss_pred cccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCcee-eecCCCCCCcceeeeecC
Q psy6394 902 LVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTIS-MSNVGNVGGTLVQPIIVP 980 (1045)
Q Consensus 902 le~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTft-iSNlG~~g~~~~~~iin~ 980 (1045)
.+...+.....|..+++-..-++---=..+..+.++....-+++.+++.-... .+.++. +-++|.+.=..|+.|-.+
T Consensus 81 ~~~d~v~p~~tv~~~~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~--k~~~~~~~~~~s~lPWlsFtslS~~ 158 (219)
T COG4845 81 GYWDNVPPMYTVFHGETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERA--KDPTPCDVYIFSNLPWLSFTSLSHH 158 (219)
T ss_pred EEeecCCcceEEEcCCCcEEEEEeccccccHHHHHHHHHHHHHHhccCccccc--CCCCcceeEEeccccccceeeeeee
Confidence 44455667777777555333333333566777888887777788777754322 233332 333444444455555322
Q ss_pred CceeEEEecceeEEeEEec------CceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchh
Q psy6394 981 RQVCIVAFGKIQLLPRFDA------EMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALL 1042 (1045)
Q Consensus 981 pq~ail~vG~i~~~pv~~~------~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~l 1042 (1045)
= .-.++.-.|+..- +|+ -.|+|++...|-.+||-++++|+..|..++++|-.+
T Consensus 159 ~-----~~~k~~~~PiF~~Grf~~~~Gk----l~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 159 Y-----RRNKIYGQPIFYAGRFYEEDGK----LTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred c-----cCCccccceeEeecceeccCCe----EEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 1 1113333444421 223 368899999999999999999999999999998654
No 201
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.97 E-value=3.1 Score=50.15 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=34.6
Q ss_pred EeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 486 VESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 486 vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
|..+.-...|.++..|+|.+|+|++||.|+.|++|+.++..
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 33333356789999999999999999999999999999754
No 202
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=77.68 E-value=4.8 Score=45.50 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=39.9
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec--cceeeEEecCCCEEEEEEeeCCCCEEecCCce
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l 520 (1045)
+.+.+ ++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..-.|..|+.|
T Consensus 233 ~~~~~--~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 233 LWYPF--VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred EEEEe--cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 77888 999999999999999832 3446789999999997774 23344444443
No 203
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=77.16 E-value=2.4 Score=38.13 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=16.9
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
+.++ ++.||.|++||+||+|=++
T Consensus 34 i~l~--~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 34 IELH--KKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp EEES--S-TTSEEBTTSEEEEEEES
T ss_pred eEec--CcCcCEECCCCeEEEEEcC
Confidence 4567 8888888888888887553
No 204
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=76.88 E-value=36 Score=41.05 Aligned_cols=39 Identities=8% Similarity=0.165 Sum_probs=30.7
Q ss_pred EEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHh
Q psy6394 704 RLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTE 749 (1045)
Q Consensus 704 ~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~ 749 (1045)
+....++-+.+..+++..|+ .+.|++.+|.-+++.||.+
T Consensus 251 ~~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~ 289 (480)
T PF07247_consen 251 YRSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSK 289 (480)
T ss_pred EEEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHh
Confidence 34556777777777776664 5799999999999999997
No 205
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=75.97 E-value=2.9 Score=50.12 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=36.5
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.-.+-+ |++||+|+.||+|++-... ..+.+.||.+|+|.+|.
T Consensus 38 G~~~k~~--Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 38 GMRPKMK--VRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred CCCCceE--eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 4456778 9999999999999976644 47889999999999995
No 206
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=75.52 E-value=5.6 Score=42.75 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=44.4
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 260 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l 260 (1045)
.+.|+.| +++|+.+++||.+.-++-- +++++--|.+ .++.+++||+|..|+.+
T Consensus 149 ~r~I~~~---~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 149 ARRIVCY---VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred ccEEEEe---CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 4677766 6899999999999999987 6777777766 38899999999999855
No 207
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=75.45 E-value=5.8 Score=42.02 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=44.9
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLL 261 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~ 261 (1045)
.+.|..| +++|+.+++||.+.-++-- .++++--|.+ .++.+++|++|..|+.|.
T Consensus 129 ~~~i~~~---~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 129 ARRIVCY---VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ccEEEEe---cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 3566666 6899999999999999987 7777777776 388999999999999764
No 208
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=75.19 E-value=3.4 Score=49.59 Aligned_cols=44 Identities=23% Similarity=0.221 Sum_probs=36.3
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEee
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 508 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~ 508 (1045)
|.-.+-+ |++||+|++||+|++-... .+..+.||.+|+|.+|..
T Consensus 39 G~~~~~~--V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMK--VKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceE--eCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 4445678 9999999999999966544 468899999999999953
No 209
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=74.99 E-value=2.9 Score=50.14 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.6
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEe
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~ 247 (1045)
+-. |++||+|+.||+|++.+ ....+.|.||.+|+|.+|.
T Consensus 44 ~~~--V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 44 EPI--VKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred cee--eCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 446 99999999999999984 3358899999999999985
No 210
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=73.90 E-value=8.9 Score=48.55 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=32.8
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEe
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~ 247 (1045)
+-+ |++||+|.+||+|.+-.. -..+.|.||.+|+|..|.
T Consensus 50 ~~~--V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 50 ELC--VKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred cce--eCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 446 999999999999997643 246899999999999974
No 211
>KOG3373|consensus
Probab=73.06 E-value=2.3 Score=43.21 Aligned_cols=38 Identities=29% Similarity=0.269 Sum_probs=35.3
Q ss_pred CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeC
Q psy6394 472 TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 509 (1045)
Q Consensus 472 ~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~ 509 (1045)
++|-.|.+||.++.+|+=|+.-+|.+|.+|.|.+|+-+
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 67889999999999999999999999999999999743
No 212
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=72.24 E-value=5.6 Score=45.38 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=35.4
Q ss_pred cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
|++||.|++|++|+|---. --+-++||.+|+|..|. -|+.=.-.+++..+
T Consensus 45 V~~gD~VkkGq~LfEdKkn-pgv~~Tap~sG~V~aI~--RG~KRvLqsVVI~~ 94 (447)
T COG1726 45 VREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIH--RGEKRVLQSVVIKV 94 (447)
T ss_pred eccCCeeeccceeeecccC-CCeEEeccCCceEEEee--cccceeeeeEEEEe
Confidence 9999999999999974322 23558999999999996 45443333444433
No 213
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=72.24 E-value=6.8 Score=44.33 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=40.8
Q ss_pred CCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 213 EGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 213 ~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.++....-.....++. .-..++.++..|.|.++++++||.|+.|++|+.++.
T Consensus 48 ~~~~~~~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 48 PAELSAAVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred ecccccceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 4444444455556665 445588899999999999999999999999999985
No 214
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=71.25 E-value=4.1 Score=48.82 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=35.3
Q ss_pred EEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 463 ~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
.-.+-+ |++||+|+.||+|++.+ ......+.||.+|+|.+|.
T Consensus 41 ~~~~~~--V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 41 APAEPI--VKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCcee--eCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 344677 99999999999999883 3358899999999999984
No 215
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=71.13 E-value=5.6 Score=43.78 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.0
Q ss_pred eEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 493 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 493 ~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+.|.||++|+|..+.+.+|+.+..|++|+.|...
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADL 122 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence 4689999999999999999999999999998643
No 216
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=71.02 E-value=8.4 Score=40.12 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=32.2
Q ss_pred CCeEeEEeccceeeEEecCCCEEEEEE-----------------------------------eeCCCCEEecCCceEEEe
Q psy6394 480 FDVVCEVESDKASVTITSRYKGTVRKV-----------------------------------YYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 480 gd~l~~vetdKa~~ei~ap~~G~v~~i-----------------------------------~~~~G~~v~vg~~l~~i~ 524 (1045)
||-++..=++ ..|.||++|+|..+ ++++||.|+.|++|++++
T Consensus 48 GdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 48 GDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred cceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 5665555543 46777777777766 579999999999999997
Q ss_pred e
Q psy6394 525 V 525 (1045)
Q Consensus 525 ~ 525 (1045)
.
T Consensus 125 ~ 125 (169)
T PRK09439 125 L 125 (169)
T ss_pred H
Confidence 4
No 217
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=70.20 E-value=4.2 Score=36.56 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=20.4
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccc
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDK 490 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdK 490 (1045)
+.=+.++ ++.||.|++||+|++|=++.
T Consensus 31 ~vGi~l~--~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 31 AVGIELH--KKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp T-EEEES--S-TTSEEBTTSEEEEEEESS
T ss_pred CcCeEec--CcCcCEECCCCeEEEEEcCC
Confidence 3445778 99999999999999886643
No 218
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=69.90 E-value=10 Score=37.53 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEeeCCCCEEecCCceEEEee
Q psy6394 503 VRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 503 v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
=-++++++||.|..|++|+.++.
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEcH
Confidence 33556899999999999999974
No 219
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=67.68 E-value=9.5 Score=38.13 Aligned_cols=44 Identities=30% Similarity=0.438 Sum_probs=29.6
Q ss_pred cCCeEeEEeccceeeEEecCCCEEEEEE-----------------------------------eeCCCCEEecCCceEEE
Q psy6394 479 EFDVVCEVESDKASVTITSRYKGTVRKV-----------------------------------YYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 479 ~gd~l~~vetdKa~~ei~ap~~G~v~~i-----------------------------------~~~~G~~v~vg~~l~~i 523 (1045)
-||-++..=++. .|-||++|+|..+ ++++||.|+.|++|+.+
T Consensus 29 lG~GvaI~p~~~---~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~ 105 (132)
T PF00358_consen 29 LGDGVAIIPSDG---KVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEF 105 (132)
T ss_dssp SSEEEEEEESSS---EEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE
T ss_pred CcCEEEEEcCCC---eEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEE
Confidence 345555444432 5778888888777 46899999999999999
Q ss_pred ee
Q psy6394 524 EV 525 (1045)
Q Consensus 524 ~~ 525 (1045)
+.
T Consensus 106 D~ 107 (132)
T PF00358_consen 106 DL 107 (132)
T ss_dssp -H
T ss_pred cH
Confidence 74
No 220
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=67.37 E-value=12 Score=36.87 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEEeeCCCCEEecCCceEEEee
Q psy6394 504 RKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 504 ~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
-+.++++||.|+.|++|+.++.
T Consensus 82 F~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 82 FTSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred eEEEecCCCEEcCCCEEEEEcH
Confidence 3557899999999999999974
No 221
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=67.05 E-value=15 Score=41.25 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=47.1
Q ss_pred eEEEEEEeccCCCCCeecCCCeE--EEEE-c-CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVV--CEVE-S-DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l--~~ve-t-dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.+-+..+. ++.||.|++||+| .++- . +-...++.+|.+|+| +.....-.|..|+.|+.+.
T Consensus 227 ~~G~~~~~--~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 227 AGGLFEPE--VKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA 290 (292)
T ss_dssp SSEEEEET--SSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred ccEEEEEe--ecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence 35666888 9999999999999 5543 2 344568999999999 5566777899999998874
No 222
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=65.20 E-value=17 Score=41.28 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=34.7
Q ss_pred EEEEeeeccCCCCeeccCCeEeEEec--cceeeEEecCCCEEEEEE
Q psy6394 463 NIKEWNGNVTEGARINEFDVVCEVES--DKASVTITSRYKGTVRKV 506 (1045)
Q Consensus 463 ~i~~w~~~v~~Gd~V~~gd~l~~vet--dKa~~ei~ap~~G~v~~i 506 (1045)
=+.+.. ++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 240 Gi~~~~--~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 240 GLFEPS--VPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEEe--cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 377888 999999999999999854 223567899999999776
No 223
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=62.95 E-value=6.5 Score=47.24 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=35.5
Q ss_pred EEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 465 KEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 465 ~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
...+ |++||+|.+||+|.+-+- -..-+.||.+|+|.+|.
T Consensus 45 ~~~~--Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILL--VKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceE--EeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 4667 999999999999998887 78889999999999997
No 224
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=62.86 E-value=7 Score=36.04 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=18.7
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++||.|++||+|++++.+
T Consensus 47 v~~~--~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 47 VEWL--VKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEES--S-TT-EEETTCEEEEEEEE
T ss_pred EEEE--eCCCCCccCCcEEEEEEeC
Confidence 5799 9999999999999999863
No 225
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=62.41 E-value=6.3 Score=47.36 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=34.6
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEe
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~ 247 (1045)
.-+ |++||+|.+||+|.+=+. -.+-+.||.+|+|.+|.
T Consensus 46 ~~~--Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 46 ILL--VKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ceE--EeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 346 999999999999999887 68899999999999998
No 226
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=61.21 E-value=9.3 Score=44.42 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=31.9
Q ss_pred eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 232 ~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.+.|.+..+|+|.++.+..++.|+.|++|+.|+..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcH
Confidence 45788999999999999999999999999999854
No 227
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=59.87 E-value=18 Score=40.85 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=36.6
Q ss_pred CCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 480 FDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 480 gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
-.....++. ....++.++..|.|.++++++||.|+.|++|+.++.
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 344445555 334478888999999999999999999999999986
No 228
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=59.72 E-value=10 Score=44.15 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=31.2
Q ss_pred eEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 233 VTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 233 ~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|.||.+|+|.+..+.+|+.|.+|++|+.+...
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~ 242 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPL 242 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecc
Confidence 4689999999999999999999999999999743
No 229
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=59.01 E-value=16 Score=37.42 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEeeCCCCEEecCCceEEEee
Q psy6394 504 RKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 504 ~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
=+.++++||.|++|++|+.++.
T Consensus 89 F~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 89 FESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred eEEEeeCCCEEccCCEEEEECH
Confidence 3446899999999999999974
No 230
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.81 E-value=17 Score=36.02 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=44.3
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeE-EecCCCEEEEEEe
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVY 507 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~e-i~ap~~G~v~~i~ 507 (1045)
..-+.+| -||-++--. +..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+.
T Consensus 91 d~ll~iP------vEGYvVtpI--aDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 91 DELLLIP------VEGYVVTPI--ADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred CEEEEEe------cCcEEEEEe--ecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 3445567 477888888 999999999999999999999887 7899999986663
No 231
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.49 E-value=19 Score=35.67 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=40.0
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeE-EeCCCCeEEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKV 246 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~-i~s~~~G~v~~i 246 (1045)
.||-++--. +..|+.|.+||+++-+.|-|-.+. +.+|.+|+|.-|
T Consensus 98 vEGYvVtpI--aDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPI--ADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEe--ecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 478888888 899999999999999999999987 889999998654
No 232
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=58.33 E-value=53 Score=36.36 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=65.4
Q ss_pred cHHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCc---cccccccCCCCccHHHHH--
Q psy6394 3 NVLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSE---SEDLLFSKDGTLNEVLLD-- 74 (1045)
Q Consensus 3 ~~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~---l~~~fy~~~g~i~~~~l~-- 74 (1045)
.+..+..|..+.- .+ |+|+|++... . +......+.|...+|+.. .- .. -.+|.+.+-
T Consensus 10 ~l~~il~HA~~~~P~EvCGLL~G~~~~~--~--------~~~~~~~v~i~~~~~~~~~~~s~-~r----~eidPee~~~a 74 (244)
T cd08068 10 VYLVCLTHALSTEKEEVMGLLIGEIEVS--K--------KGEEVAIVHISAVIILRRSDKRK-DR----VEISPEQLSAA 74 (244)
T ss_pred HHHHHHHHHHhCCCcceeEEEEeecccc--c--------ccccceeEEEeeeccccccCCCC-ce----EEeCHHHHHHH
Confidence 3556777777765 44 9999996422 0 111222334444555421 11 11 134444332
Q ss_pred -----HHhcc--CCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEee---ccccccccceeeceeee
Q psy6394 75 -----TILGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRIS---TNVVFEENFTYTNKFLC 144 (1045)
Q Consensus 75 -----~il~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t---~~~~~~~~~t~~~~~l~ 144 (1045)
++++. +.-.|||||.=--.+.-.||-+|.--+..++.+ +..|+++++. ....+..+...++-|-.
T Consensus 75 ~~ea~~~~~~~~rgl~vVGwYHSHP~~~a~PS~~Dv~tq~~~q~~-----~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~ 149 (244)
T cd08068 75 STEAERLTEETGRPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMM-----DSGFVGLIFSCFNEDKSTKMGEVQVTCFQS 149 (244)
T ss_pred HHHHHHHHhhccCCceEEEEEecCCCCCCCCCHhHHHHHHHHHhh-----CCCcEEEEEEecCCccccccCCEEEEEEEe
Confidence 22222 345699999988888899999997755343321 2456666654 32233444444444443
Q ss_pred cc
Q psy6394 145 TT 146 (1045)
Q Consensus 145 ~~ 146 (1045)
..
T Consensus 150 ~~ 151 (244)
T cd08068 150 VQ 151 (244)
T ss_pred cC
Confidence 33
No 233
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=58.23 E-value=11 Score=47.80 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=35.0
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.-.+-+ |++||+|.+||+|++-.. -....|.||.+|+|..|.
T Consensus 46 G~~~~~~--V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELC--VKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcce--eCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 3445677 999999999999996542 256889999999999983
No 234
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=53.23 E-value=12 Score=34.46 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=18.7
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES 488 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet 488 (1045)
-++|+ +++|+.|++||+|++++-
T Consensus 46 ~v~~~--~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWL--VKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEES--S-TT-EEETTCEEEEEEE
T ss_pred EEEEE--eCCCCCccCCcEEEEEEe
Confidence 45799 999999999999999874
No 235
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=51.13 E-value=22 Score=38.02 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=49.5
Q ss_pred EEccCCCCCCceEEEEEEeccC-CCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEE
Q psy6394 190 FKLADIGEGIREVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 262 (1045)
Q Consensus 190 ~~~P~lg~~~~eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~ 262 (1045)
+.+=.+|.. .=|.|+-|. - ++|+.|++||.+.-++= =+++.+--|.+-+. ++.+++|+.|..|+.|++
T Consensus 134 v~~v~Vga~-~v~~I~~~~--~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGAL-LVGSIVLTV--DPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEEEEeccc-eeceeEEEe--cccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 455555653 447777774 3 68999999999999986 44555544444333 899999999999999863
No 236
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=49.68 E-value=26 Score=39.14 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=39.8
Q ss_pred cHHHHHHhhcCCCCc---eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCC--CCccH---HHHH
Q psy6394 3 NVLSVSRSLRSICKT---GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKD--GTLNE---VLLD 74 (1045)
Q Consensus 3 ~~~~~~~~~~s~~~~---gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~--g~i~~---~~l~ 74 (1045)
++++++.|..+.... |.|+|.... .+++|++.+|.+..- . .+.. -.++. ..+-
T Consensus 9 vllkIv~H~~~~~p~~v~G~LLG~~~~-----------------~~leVtn~Fp~P~~~-~-~~~~~~~~~~~~yq~~m~ 69 (266)
T cd08065 9 VVLKIIKHCKEELPELVQGQLLGLDVG-----------------GTLEVTNCFPFPKSE-E-DDSDRADEDIADYQLEMM 69 (266)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeeeEcC-----------------CEEEEEeccCCCCCC-C-CCcchhhhhHHHHHHHHH
Confidence 567778777776633 999998641 256677777776321 0 0000 11221 2333
Q ss_pred HHhccCC--CceeEEEEeec
Q psy6394 75 TILGEFK--ADVVGWYSFTR 92 (1045)
Q Consensus 75 ~il~~~~--k~viGWyrfRr 92 (1045)
+.++... .++||||.=-.
T Consensus 70 ~~~r~v~~~e~iVGWY~S~p 89 (266)
T cd08065 70 RLLREVNVDHNHVGWYQSTY 89 (266)
T ss_pred HHHHHhCCCCcEEEeEeecC
Confidence 4444443 37999996544
No 237
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=49.61 E-value=36 Score=38.22 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=45.8
Q ss_pred EEEEeeeccCCCCeeccCCeE--eEEec--cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 463 NIKEWNGNVTEGARINEFDVV--CEVES--DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 463 ~i~~w~~~v~~Gd~V~~gd~l--~~vet--dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
-+..+. ++.||.|++||+| ..+-. +-...++.||.+|+|.-+ .+.-.|..|+.|+.+.
T Consensus 229 G~~~~~--~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPE--VKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPYVEQGDALAKVA 290 (292)
T ss_dssp EEEEET--SSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSECTTTEEEEEEE
T ss_pred EEEEEe--ecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--CcccccCCCCeEEEEe
Confidence 366888 9999999999999 54432 334568999999999555 6888888998888875
No 238
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=49.26 E-value=35 Score=33.55 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccC--CCCccHHHHH---H
Q psy6394 4 VLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSK--DGTLNEVLLD---T 75 (1045)
Q Consensus 4 ~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~--~g~i~~~~l~---~ 75 (1045)
+..++++....- .+ |||+|....... .|+.++||.... -++ .=.++.+-+. +
T Consensus 4 ~~~il~ha~~~~P~E~cGlL~G~~~~~~~-----------------~i~~~~p~~n~~---~~~~~~f~~d~~~~~~~~~ 63 (128)
T cd08070 4 LEAILAHAEAEYPEECCGLLLGKGGGVTA-----------------IVTEVYPVRNVA---ESPRRRFEIDPAEQLAAQR 63 (128)
T ss_pred HHHHHHHHHhCCCCceEEEEEeecCCCCc-----------------eEEEEEEccCCC---CCCCceEEECHHHHHHHHH
Confidence 455666666644 45 999998543211 125678886432 111 1134444333 3
Q ss_pred HhccCCCceeEEEEeecccccccchhhHHHH
Q psy6394 76 ILGEFKADVVGWYSFTRNQDLSQSLCQLFLA 106 (1045)
Q Consensus 76 il~~~~k~viGWyrfRrns~~~~s~re~~~h 106 (1045)
-+......+||||.---+..-.||-.++...
T Consensus 64 ~~~~~g~~~vG~~HSHP~~~~~PS~~D~~~~ 94 (128)
T cd08070 64 EARERGLEVVGIYHSHPDGPARPSETDLRLA 94 (128)
T ss_pred HHHHCCCeEEEEEeCCCCCCCCCCHHHHHhc
Confidence 3444456799999999999999999998777
No 239
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=48.86 E-value=35 Score=36.17 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=41.1
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceE
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLL 521 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~ 521 (1045)
+.|..| +++|+.+++||.+.-++-- .++++--|.+ .++.+++|+.|..|+.|+
T Consensus 130 ~~i~~~---~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVCY---VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEEe---cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 345444 5899999999999999876 5556666665 277899999999999664
No 240
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=48.22 E-value=35 Score=36.72 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=40.3
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCce
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l 520 (1045)
+.|..| +++|+.+++||.+..++-- .++++--|.+ .++.+++||.|..|+.+
T Consensus 150 r~I~~~---~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getv 201 (206)
T PRK05305 150 RRIVCY---VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETV 201 (206)
T ss_pred cEEEEe---CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEE
Confidence 445554 5899999999999999876 4555556655 27889999999999844
No 241
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=46.73 E-value=14 Score=36.91 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.8
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
|+--+|+ |++||+|++||+|+++.-+
T Consensus 83 G~gF~~~--v~~G~~V~~G~~L~~~D~~ 108 (132)
T PF00358_consen 83 GEGFETL--VKEGDKVKAGQPLIEFDLE 108 (132)
T ss_dssp TTTEEES--S-TTSEE-TTEEEEEE-HH
T ss_pred CcceEEE--EeCCCEEECCCEEEEEcHH
Confidence 3445788 9999999999999998643
No 242
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=45.03 E-value=17 Score=35.89 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
|+=-+|+ +++||+|++||+|+++--
T Consensus 79 g~gF~~~--vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 79 GEGFTSH--VEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred CCceEEE--ecCCCEEcCCCEEEEEcH
Confidence 4446788 899999999999998754
No 243
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=44.77 E-value=33 Score=38.44 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=43.5
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
..|..|. .+|+.|++||.+..++=. +++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~---~~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYE---YENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeec---cCCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 4566774 569999999999999886 5666555544 33 7789999999999999754
No 244
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=44.40 E-value=17 Score=35.72 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=19.8
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
|+=-+++ |++||+|++||+|+++.-
T Consensus 79 G~gF~~~--v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 79 GEGFTSH--VEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred CCceEEE--ecCCCEEcCCCEEEEEcH
Confidence 3335778 899999999999998764
No 245
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=41.20 E-value=22 Score=37.11 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.1
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
|+=-+++ |++||+|++||+|+++.-
T Consensus 101 G~gF~~~--Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 101 GEGFKRI--AEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred CCceEEE--ecCCCEEeCCCEEEEEcH
Confidence 3445788 999999999999999865
No 246
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=40.82 E-value=45 Score=41.88 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=44.0
Q ss_pred eeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE------------------------------
Q psy6394 461 EVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV------------------------------ 506 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i------------------------------ 506 (1045)
+|+++... ++-|.|=. ||-++..=+| .+|.||++|+|..+
T Consensus 486 ~G~v~~L~---~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G 559 (627)
T PRK09824 486 TGEVVPLE---QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDG 559 (627)
T ss_pred ceEEeeHH---HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCC
Confidence 56666654 55555544 6776665554 48899999999877
Q ss_pred -----eeCCCCEEecCCceEEEee
Q psy6394 507 -----YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 -----~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|++++.
T Consensus 560 ~gF~~~v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 560 KFFTAHVNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred CCceEEecCCCEEcCCCEEEEEcH
Confidence 4689999999999999975
No 247
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=40.42 E-value=44 Score=35.68 Aligned_cols=58 Identities=10% Similarity=-0.036 Sum_probs=42.7
Q ss_pred eeEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEE
Q psy6394 461 EVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 522 (1045)
Q Consensus 461 eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~ 522 (1045)
=+.|.-|. . ++|+.|++||.+..++= -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 144 v~~I~~~~--~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 144 VGSIVLTV--DPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred eceeEEEe--cccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 35565555 4 69999999999999886 44454444444323 888999999999999874
No 248
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=38.39 E-value=57 Score=41.09 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=42.3
Q ss_pred eeEEEEeeeccCCCCeec----cCCeEeEEeccceeeEEecCCCEEEEEE------------------------------
Q psy6394 461 EVNIKEWNGNVTEGARIN----EFDVVCEVESDKASVTITSRYKGTVRKV------------------------------ 506 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~----~gd~l~~vetdKa~~ei~ap~~G~v~~i------------------------------ 506 (1045)
+|+++... ++-|.|= -||-++..=+| .+|.||++|+|..+
T Consensus 506 ~G~vi~l~---~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G 579 (648)
T PRK10255 506 TGDVVALD---QVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEG 579 (648)
T ss_pred CcEEEEcc---cCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCC
Confidence 46666654 3344333 36777766665 47889999999877
Q ss_pred -----eeCCCCEEecCCceEEEee
Q psy6394 507 -----YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 -----~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|++++.
T Consensus 580 ~gF~~~Vk~Gd~V~~G~~l~~~D~ 603 (648)
T PRK10255 580 KGFKRLVEEGAQVSAGQPILEMDL 603 (648)
T ss_pred CCceEEecCCCEEcCCCEEEEEcH
Confidence 4689999999999999874
No 249
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=37.44 E-value=83 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=23.4
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccce
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKA 491 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa 491 (1045)
|+--+-+ +++||+|++||+|+++.-|+.
T Consensus 86 GegF~~~--v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESL--VKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEE--eeCCCEEccCCEEEEECHHHH
Confidence 5556778 999999999999999987643
No 250
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=37.03 E-value=32 Score=38.59 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.7
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
..|+ +++||.|++||+|+++|.+
T Consensus 66 ~~~~--~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 66 IQWL--VKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEE--cCCCCEeCCCCEEEEEecc
Confidence 4788 9999999999999999865
No 251
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=36.29 E-value=1.1e+02 Score=35.81 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred EEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEE-EcCCceeEEeCC--CCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEV-ESDKASVTITSR--YKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 190 ~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~v-etdKa~~~i~s~--~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
+.+|.|... +.-+|.-.+|+||.|..||.+.+| ||.-.+..|-.| ..|+|+.| +.+|+ ..+-+.++.++.+
T Consensus 38 ~~~~~ld~~----~~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~ 111 (369)
T cd01134 38 VNVPALDRD----KKWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFD 111 (369)
T ss_pred CCCCCCCCC----CeeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeC
Confidence 455655432 222333337899999999999987 554455555444 48998664 55666 3455677777743
Q ss_pred C
Q psy6394 267 D 267 (1045)
Q Consensus 267 ~ 267 (1045)
+
T Consensus 112 g 112 (369)
T cd01134 112 G 112 (369)
T ss_pred C
Confidence 3
No 252
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=34.78 E-value=78 Score=39.23 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCCeecCCCeEEEE-EcCCceeEEeCC--CCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 211 VTEGARINEFDVVCEV-ESDKASVTITSR--YKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~v-etdKa~~~i~s~--~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
+|+||.|..||++.+| ||.-....|-.| ..|+|+.| +++|+ ..+.++|+.++.
T Consensus 124 ~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 124 LRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred cccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 7889999999999976 665555555444 47999766 56676 577899999985
No 253
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=34.61 E-value=40 Score=42.29 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=19.9
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
|+=-+.+ ||+||+|++||+|+++.-
T Consensus 543 g~gF~~~--v~~g~~V~~G~~l~~~d~ 567 (610)
T TIGR01995 543 GEGFEIL--VKVGDHVKAGQLLLTFDL 567 (610)
T ss_pred CCCeEEE--ecCcCEEcCCCEEEEecH
Confidence 4445778 899999999999998855
No 254
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=31.62 E-value=53 Score=36.67 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=49.4
Q ss_pred EEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 190 ~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
+-+=.+|.. --|.|+ | ..+|+.|++||.+.-++-. +++.+--|.+-+--...+.+|+.|..|+.|+.+
T Consensus 191 v~~v~Vga~-~Vg~I~-~---~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 191 MALVKVGAM-FVNSIE-L---THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EEEEEEeeE-EeeEEE-E---ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 334445543 336665 5 4589999999999999998 888777666533235678899999999998753
No 255
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=31.56 E-value=72 Score=38.80 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.7
Q ss_pred eccceeeEEecCCCEEEEEE------------------------eeCCCCEEecCCceEEEeecC
Q psy6394 487 ESDKASVTITSRYKGTVRKV------------------------YYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 487 etdKa~~ei~ap~~G~v~~i------------------------~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..-+-+.+|.|+.+|+|..| +.+.||.|..|++|+.|..+.
T Consensus 408 ~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 408 EAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAES 472 (493)
T ss_pred CCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCC
Confidence 34566889999999999988 469999999999999998543
No 256
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=30.83 E-value=86 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.8
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
|+=-+++ |++||+|++||+|+++.-
T Consensus 559 G~gF~~~--v~~Gd~V~~G~~l~~~D~ 583 (627)
T PRK09824 559 GKFFTAH--VNVGDKVNTGDLLIEFDI 583 (627)
T ss_pred CCCceEE--ecCCCEEcCCCEEEEEcH
Confidence 3334788 999999999999999865
No 257
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=30.62 E-value=67 Score=46.10 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEee
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~ 248 (1045)
|++|+.|++||+||+... -+..|-+..+|+|.=...
T Consensus 2426 v~~g~~V~~g~~la~wdp--~~~piisE~~G~v~f~d~ 2461 (2836)
T PRK14844 2426 VDEGGSVKIGDKVAEWDP--YTLPIITEKTGTVSYQDL 2461 (2836)
T ss_pred ecCCCEecCCCEEEEEcC--CCcceEeecceEEEEEEE
Confidence 899999999999998633 244444444444433333
No 258
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=29.51 E-value=57 Score=40.96 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=36.4
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeE---EecC----CCEEEEEEeeCCCCEEecCCceEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVT---ITSR----YKGTVRKVYYGEGDVALVGKPLLD 522 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~e---i~ap----~~G~v~~i~~~~G~~v~vg~~l~~ 522 (1045)
+|+--+.+ |++||+|++||+|+++.-++..-. ...| -......+....+..+..|+++..
T Consensus 542 ~g~gF~~~--v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~~~~~~~~~~ 608 (610)
T TIGR01995 542 NGEGFEIL--VKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDVLLR 608 (610)
T ss_pred CCCCeEEE--ecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCcccCCCeeEE
Confidence 35566888 999999999999999987543221 1111 111222333344555777776654
No 259
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=28.97 E-value=84 Score=38.22 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=37.0
Q ss_pred EEEEcCCceeEEeCCCCeEEEEE------------------------eeCCCCeecCCCeEEEEEecCc
Q psy6394 224 CEVESDKASVTITSRYKGTVRKV------------------------YYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 224 ~~vetdKa~~~i~s~~~G~v~~i------------------------~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
..+..-+.+.+|.|+.+|+|..| +++.||.|+.|++|++|-.+.+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~ 473 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESE 473 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCH
Confidence 33455677899999999999875 5889999999999999985543
No 260
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=27.44 E-value=74 Score=40.13 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=21.0
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
|+=-+.+ ||+||+|++||+|+++.-+
T Consensus 579 G~gF~~~--Vk~Gd~V~~G~~l~~~D~~ 604 (648)
T PRK10255 579 GKGFKRL--VEEGAQVSAGQPILEMDLD 604 (648)
T ss_pred CCCceEE--ecCCCEEcCCCEEEEEcHH
Confidence 3445678 9999999999999998654
No 261
>PRK04350 thymidine phosphorylase; Provisional
Probab=25.34 E-value=1e+02 Score=37.55 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=34.3
Q ss_pred eccceeeEEecCCCEEEEEE------------------------eeCCCCEEecCCceEEEeecC
Q psy6394 487 ESDKASVTITSRYKGTVRKV------------------------YYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 487 etdKa~~ei~ap~~G~v~~i------------------------~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..-+-..+|.|+.+|+|..| +.+.||.|..|++|+.|..+.
T Consensus 400 ~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 400 PLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAES 464 (490)
T ss_pred CCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCC
Confidence 34566888999999999988 469999999999999998543
No 262
>KOG1556|consensus
Probab=24.95 E-value=51 Score=35.96 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred cHHHHHHhhcCCCC-----c-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCcccccc-ccCCC----CccH-
Q psy6394 3 NVLSVSRSLRSICK-----T-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLL-FSKDG----TLNE- 70 (1045)
Q Consensus 3 ~~~~~~~~~~s~~~-----~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~f-y~~~g----~i~~- 70 (1045)
+|+|+..|+|-... + |.|||.-..+ +|+|++.+-|+ | -|-.+ .+|-
T Consensus 17 VLLS~VDhynR~~k~~~KRvvGvLLG~~~~~-----------------~i~vtnSfAvp-----FeEDdk~~svWFlDh~ 74 (309)
T KOG1556|consen 17 VLLSAVDHYNRVGKDTNKRVVGVLLGSWNGD-----------------VIDVTNSFAVP-----FEEDDKDKSVWFLDHN 74 (309)
T ss_pred HHHHHHHHHhhhccCcCceEEEEEEecCCCC-----------------eEEeecceecc-----ccccCCCCceEEeccH
Confidence 68899999987762 2 9999965433 45666667775 1 11111 1222
Q ss_pred --HHHHHHhcc--CCCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394 71 --VLLDTILGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF 113 (1045)
Q Consensus 71 --~~l~~il~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~ 113 (1045)
+.+-.+... .+..|+|||.-. .++-=.+.-|++.|..+.
T Consensus 75 Y~esM~~mfkKvNakekivGWYhTG----Pkl~~nDl~In~l~k~y~ 117 (309)
T KOG1556|consen 75 YIESMFGMFKKVNAKEKVVGWYHTG----PKLRENDLDINELLKRYV 117 (309)
T ss_pred HHHHHHHHHHHhcchhheeeeeccC----CccccchhhHHHHHhhcC
Confidence 122222222 245699999543 222223467886665544
No 263
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.90 E-value=67 Score=36.23 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++++..
T Consensus 66 v~~~--~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELH--KKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEE--eCCCCEEcCCCEEEEEEEC
Confidence 5899 9999999999999998854
No 264
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=24.78 E-value=1e+02 Score=37.57 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=32.8
Q ss_pred cceeeEEecCCCEEEEEE------------------------eeCCCCEEecCCceEEEeecC
Q psy6394 489 DKASVTITSRYKGTVRKV------------------------YYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 489 dKa~~ei~ap~~G~v~~i------------------------~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
-+-..+|.||.+|+|..| +.+.||.|..|++|+.|..+.
T Consensus 411 a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 411 GDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAES 473 (500)
T ss_pred CCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCC
Confidence 445788999999999888 469999999999999998543
No 265
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=24.04 E-value=76 Score=34.95 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=42.2
Q ss_pred EEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEE
Q psy6394 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 262 (1045)
Q Consensus 203 ~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~ 262 (1045)
.+..|.-..++|+.|++||-+.-++=- +++.+--|.+-+--+..+.+|+.|..|+.|+.
T Consensus 178 ~~~~~~y~~~~g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 178 FTQTWTYNALGPVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred ceeeEeeccccCceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 345555111239999999999999885 67766666542333678999999999999863
No 266
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=24.00 E-value=2.4e+02 Score=33.15 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=46.1
Q ss_pred EecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEe-ccceeeEEecC--CCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 451 NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVE-SDKASVTITSR--YKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 451 ~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~ve-tdKa~~ei~ap--~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.+|.|.. -+..+|.-.+++||.|..||.+.+|. |.-..-.|..| ..|+|..+. .+|+ ..+.+.++.++..
T Consensus 39 ~~~~ld~----~~~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~-~~g~-~~~~~~~~~~~~~ 111 (369)
T cd01134 39 NVPALDR----DKKWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA-PAGD-YTVDDVILEVEFD 111 (369)
T ss_pred CCCCCCC----CCeeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe-cCCC-eeEEEEEEEEEeC
Confidence 4565543 23344443489999999999999775 44445555555 599998763 5666 4556777888753
No 267
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=23.61 E-value=2.4e+02 Score=25.85 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=35.7
Q ss_pred CceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 199 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 199 ~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
+.+|+|+.+. - -....-.+.|+...-...+.. -+..+.++.||.|+.|+.|+.+.
T Consensus 19 ~~~G~V~~~~--~-----~~~~g~~V~i~~~~g~~~~y~----~l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 19 PADGKVVFVG--E-----DPGYGNYVIIQHGNGYITVYG----HLDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp SSSEEEEEEE--E-----ETTTEEEEEEEETTSEEEEEE----EESEESS-TTSEE-TTCEEEEEB
T ss_pred CccEEEEEEE--e-----ccCCccEEEEEeCCcCCEEEe----ccccccceecccccCCCEEEecC
Confidence 4568998886 2 224455566666544343332 26677799999999999999986
No 268
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=23.45 E-value=1.2e+02 Score=33.92 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=42.2
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
..|..|. . +|+.|++||.+..++=- .++.+--|.+ .+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~--~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYE--Y-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeec--c-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCEEEcchhhccC
Confidence 4567777 4 49999999999998874 4555544443 33 6778999999999999754
No 269
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=23.35 E-value=62 Score=38.77 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=14.3
Q ss_pred EeeCCCCeecCCCeEEEEEec
Q psy6394 246 VYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 246 i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
++++.||.|+.|++|++|-.+
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred eccCCcCEeCCCCeEEEEECC
Confidence 456677777777777777643
No 270
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=23.12 E-value=72 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=34.6
Q ss_pred EeccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeec
Q psy6394 486 VESDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 486 vetdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+-..+-..+|.|+.+|+|..| +.+.||.|..|++|+.|...
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 345677889999999999988 45889999999999999754
No 271
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=22.86 E-value=64 Score=38.74 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=29.5
Q ss_pred cCCCCccHHHH--HHHhccC----CCceeEEEEeecccccccchhh-HHHHhhhhhhhhcCC
Q psy6394 63 SKDGTLNEVLL--DTILGEF----KADVVGWYSFTRNQDLSQSLCQ-LFLAHHFSNYFSHIP 117 (1045)
Q Consensus 63 ~~~g~i~~~~l--~~il~~~----~k~viGWyrfRrns~~~~s~re-~~~h~~~~~~~~~~~ 117 (1045)
+..|.|+..-| -+|++.+ ...|+==.+|-. .-...|+-| +.|.+.|..+=..+.
T Consensus 172 dvt~tvds~pli~aSImSKK~A~G~~~lvlDVk~G~-gAfmkt~~~A~~La~~mv~ig~~~g 232 (440)
T PRK05820 172 DVTATVESIPLITASILSKKLAEGLDALVLDVKVGS-GAFMKTYEEARELARSMVEVANGAG 232 (440)
T ss_pred cccCCCChHHHHHHHHHHHHHHcCCCeEEEEcCCCC-CCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 46788888666 5666653 344554455554 334445555 445544444444443
No 272
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=22.72 E-value=1.2e+02 Score=36.52 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.9
Q ss_pred cceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeecC
Q psy6394 489 DKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 489 dKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
-+-..+|.|+.+|+|.+| +.+.||.|+.|++|+.|..+.
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAAD 405 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCC
Confidence 344677788888888777 468999999999999998543
No 273
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.48 E-value=80 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 204 IKEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 204 i~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
-++|+ ++.|+.|++||+|++++.+
T Consensus 66 ~v~~~--~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 66 TVTLA--VADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEE--eCCCCEecCCCEEEEEEec
Confidence 35899 9999999999999998854
No 274
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.29 E-value=88 Score=35.12 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
+--++|+ +++|+.|++||+|++++.+
T Consensus 57 ~l~v~~~--~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWL--VKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEE--eCCCCEecCCCEEEEEEEC
Confidence 4446788 8888888888888888754
No 275
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=22.24 E-value=2.5e+02 Score=29.71 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHhhcCCCCc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCcccccc-ccCCCCccHHHHHHHhccCCC
Q psy6394 6 SVSRSLRSICKT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLL-FSKDGTLNEVLLDTILGEFKA 82 (1045)
Q Consensus 6 ~~~~~~~s~~~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~f-y~~~g~i~~~~l~~il~~~~k 82 (1045)
.+.|...-+..+ |+|+|.... + ..+.|...+|+.-. .| -++.-+|-....++-.++..-
T Consensus 9 i~~HA~k~p~~evcGlLlG~~~~-----------~-----~~~~V~d~vPl~h~--~~~l~P~~Eval~~ve~~~~~~gl 70 (182)
T cd08060 9 MLLHAAKYPHCAVNGLLLGKKSS-----------G-----GSVEITDAVPLFHS--CLALAPMLEVALALVDAYCKSSGL 70 (182)
T ss_pred HHHHHHHcCCchheEEEEeeecC-----------C-----CCEEEEEEEEcCCC--ccccCHHHHHHHHHHHHHHHHCCC
Confidence 456666665545 999999432 1 11334455665421 12 223333344445555555555
Q ss_pred ceeEEEEeec
Q psy6394 83 DVVGWYSFTR 92 (1045)
Q Consensus 83 ~viGWyrfRr 92 (1045)
.|||+|.=.-
T Consensus 71 ~IvG~Yhsh~ 80 (182)
T cd08060 71 VIVGYYQANE 80 (182)
T ss_pred EEEEEEecCC
Confidence 7999995433
No 276
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=21.82 E-value=5.6e+02 Score=30.43 Aligned_cols=166 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred eeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCC-
Q psy6394 702 SLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKH- 780 (1045)
Q Consensus 702 ~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~- 780 (1045)
+.+....+++..+.+..+. .+.|++++++-|++.+|.+ |....+. .....+.|++.|+.-.
T Consensus 229 r~~~~~~~~~~~l~~~a~~----------~g~T~ndvllaa~~~al~~-------~~~~~~~-~~~~~i~~~~pv~~R~~ 290 (446)
T TIGR02946 229 RRFAAQSLPLADVKAVAKA----------FGVTINDVVLAAVAGALRR-------YLEERGE-LPDDPLVAMVPVSLRPM 290 (446)
T ss_pred ceEEeeccCHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHH-------HHHHcCC-CCCCceEEEEeeecccc
Q ss_pred ----------CeeeeeecccccccHHHHHHHHHHHHhccccCC--------------------------CCCCccCCCce
Q psy6394 781 ----------GLVVPNIKSVNKLCLLDITRELLRIQGCSHEGK--------------------------VLPRDIQGGTI 824 (1045)
Q Consensus 781 ----------GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~k--------------------------l~~~d~~ggTf 824 (1045)
|++...+.--....+..+ .++++....+++.. +.......-|+
T Consensus 291 ~~~~~~~N~~~~~~~~l~~~~~~~~~~l-~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 369 (446)
T TIGR02946 291 EDDSEGGNQVSAVLVPLPTGIADPVERL-SAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNL 369 (446)
T ss_pred ccCCCCCCEEEEEEecCCCCCCCHHHHH-HHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeE
Q ss_pred EeeccCCcc---------ceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhh
Q psy6394 825 SMSNVGNVG---------GTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLW 895 (1045)
Q Consensus 825 tISNlG~~G---------~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~ 895 (1045)
+|||++... +....++..++.-..++++-...--. |.+++++|..++. +..+|...+
T Consensus 370 ~~SNvpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy~g~------------l~~~~~~d~~~~~--d~~~l~~~~ 435 (446)
T TIGR02946 370 VISNVPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTSYNGQ------------LDFGLLADRDAVP--DPQELADAL 435 (446)
T ss_pred EEeCCCCCCcccEecCeeEEEeeccccccCCCeEEEEEEecCCe------------EEEEEeechhhCC--CHHHHHHHH
Q ss_pred hhcccccc
Q psy6394 896 KSLENILV 903 (1045)
Q Consensus 896 ~~~~~ile 903 (1045)
.+. ++
T Consensus 436 ~~~---l~ 440 (446)
T TIGR02946 436 EAA---LE 440 (446)
T ss_pred HHH---HH
No 277
>KOG3050|consensus
Probab=21.71 E-value=1.3e+02 Score=33.03 Aligned_cols=37 Identities=11% Similarity=0.353 Sum_probs=26.4
Q ss_pred HHHHHHhccCCCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394 71 VLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF 113 (1045)
Q Consensus 71 ~~l~~il~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~ 113 (1045)
+-.+++..|.. +||||.-. --++=-|.=||++++++-
T Consensus 81 eqykqVFpdl~--vlGwYttG----~d~t~sd~~i~k~l~~i~ 117 (299)
T KOG3050|consen 81 EQYKQVFPDLY--VLGWYTTG----SDPTPSDIHIHKQLMDIN 117 (299)
T ss_pred HHHHHhcccce--EEEEeecC----CCCChhhhHHHHHHHhhh
Confidence 33445555543 99999765 445778999999998887
No 278
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.46 E-value=87 Score=35.37 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=20.7
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ ++.|+.|++||+|++++.+
T Consensus 68 ~~~~--~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQ--VADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEE--eCCCCEEcCCCEEEEEEEc
Confidence 6899 9999999999999998854
No 279
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=21.45 E-value=1.9e+02 Score=35.40 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=47.8
Q ss_pred EEccCCCCCCceEEEEEEe--ccCCCCCeecCCCeEEEE-EcCCc-eeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 190 FKLADIGEGIREVNIKEWN--GNVTEGARINEFDVVCEV-ESDKA-SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 190 ~~~P~lg~~~~eg~i~~w~--~~v~~Gd~V~~gd~l~~v-etdKa-~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
+.+|.|... .+|. -.+|+||+|..||+|..| ||--. -+-++.+.+|....+.+.+|+ ..+-++|+.++.
T Consensus 105 v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~ 177 (588)
T COG1155 105 LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVST 177 (588)
T ss_pred CCCCCCCcc------cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEec
Confidence 455666543 2564 115799999999999987 44322 223555657777788887786 456688999975
Q ss_pred cCc
Q psy6394 266 EDE 268 (1045)
Q Consensus 266 ~~~ 268 (1045)
++.
T Consensus 178 ~~g 180 (588)
T COG1155 178 EGG 180 (588)
T ss_pred CCC
Confidence 544
No 280
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=21.26 E-value=88 Score=35.44 Aligned_cols=23 Identities=13% Similarity=0.204 Sum_probs=20.3
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ ++.|+.|++||+|++++..
T Consensus 63 v~~~--~~dG~~v~~G~~i~~~~G~ 85 (284)
T PRK06096 63 IDDA--VSDGSQANAGQRLISAQGN 85 (284)
T ss_pred EEEE--eCCCCEeCCCCEEEEEEeC
Confidence 5899 9999999999999988753
No 281
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=21.20 E-value=89 Score=35.15 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.8
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++++.+
T Consensus 58 v~~~--~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 58 VDLA--AASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEEE--cCCCCEecCCCEEEEEEEc
Confidence 5788 9999999999999998854
No 282
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=21.17 E-value=1e+02 Score=33.91 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=42.6
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEE
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 522 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~ 522 (1045)
+.+..|..+.++|+.|++||.+..++=- .++.+--|.+-.--+..+++|+.|..|+.|++
T Consensus 177 ~~~~~~~y~~~~g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 177 EFTQTWTYNALGPVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred cceeeEeeccccCceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 3466777334459999999999988873 56655555432222567899999999999864
No 283
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=20.90 E-value=1.3e+02 Score=36.11 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=32.8
Q ss_pred ccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeecC
Q psy6394 488 SDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 488 tdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..+-..+|.|+.+|+|..| +.+.||.|..|++|+.|....
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCC
Confidence 3566788889999998877 468999999999999998543
No 284
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.89 E-value=81 Score=35.44 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=19.6
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES 488 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet 488 (1045)
-..|+ +++||.|+.||.|+++|-
T Consensus 65 ~~~~~--~~DG~~v~~g~~i~~~~G 87 (280)
T COG0157 65 EIQWL--VKDGDRVKPGDVLAEIEG 87 (280)
T ss_pred EEEEE--cCCCCEeCCCCEEEEEec
Confidence 45789 999999999999888764
No 285
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.77 E-value=92 Score=35.49 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++++.+
T Consensus 87 v~~~--~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWH--VDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEE--cCCCCEecCCCEEEEEEEC
Confidence 5899 9999999999999998864
No 286
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.50 E-value=95 Score=35.32 Aligned_cols=23 Identities=35% Similarity=0.705 Sum_probs=20.4
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ ++.|+.|++||+|++++..
T Consensus 84 v~~~--~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 84 VTWR--YREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEEE--cCCCCEeCCCCEEEEEEeC
Confidence 6899 9999999999999998753
No 287
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=20.37 E-value=1.4e+02 Score=36.00 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=31.6
Q ss_pred ccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEee
Q psy6394 488 SDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 488 tdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~ 525 (1045)
.-+-..+|.|+.+|+|..| +.+.||.|..|++|+.|..
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 3455778888888888888 4589999999999999983
No 288
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.35 E-value=95 Score=35.26 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=20.5
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++++.+
T Consensus 74 ~~~~--~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 74 FTPL--VAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEE--cCCCCEecCCCEEEEEEEc
Confidence 4799 9999999999999998854
No 289
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=20.19 E-value=78 Score=37.96 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=8.9
Q ss_pred eeCCCCeecCCCeEEEEE
Q psy6394 247 YYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 247 ~~~~g~~v~vG~~l~~i~ 264 (1045)
+++.||.|+.|++|++|-
T Consensus 381 ~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 381 RKKVGDSVKKGESLATIY 398 (434)
T ss_pred ccCCcCEeCCCCeEEEEe
Confidence 344455555555555544
No 290
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.14 E-value=97 Score=35.20 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.7
Q ss_pred EEEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 204 IKEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 204 i~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
-++|+ +++|+.|++||+|++++.+
T Consensus 77 ~v~~~--~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 77 EVLDR--VEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEE--cCCCCEecCCCEEEEEEEC
Confidence 35899 9999999999999998854
No 291
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=20.05 E-value=1.4e+02 Score=35.36 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEe-------eCCCCeecCCCeEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY-------YGEGDVALVGKPLLD 262 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~-------~~~g~~v~vG~~l~~ 262 (1045)
+|+-.... |.|-... +...+..-.+|-|-.||+|.++. |++||.|+.||+|..
T Consensus 167 ~GT~l~I~--v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 167 KGTRLIIE--VVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EeeEEEEE--EEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Done!