Query psy6394
Match_columns 1045
No_of_seqs 648 out of 4822
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:46:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 6.4E-80 2.2E-84 716.0 -0.5 401 447-909 2-425 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 5.8E-53 2E-57 457.7 20.0 227 676-908 16-243 (256)
3 2ii3_A Lipoamide acyltransfera 100.0 1.1E-52 3.8E-57 457.8 21.1 229 676-908 29-257 (262)
4 1dpb_A Dihydrolipoyl-transacet 100.0 5E-52 1.7E-56 448.8 22.4 228 677-909 14-242 (243)
5 3l60_A Branched-chain alpha-ke 100.0 2.2E-52 7.6E-57 451.6 18.0 218 682-908 18-238 (250)
6 1scz_A E2, dihydrolipoamide su 100.0 5.4E-52 1.9E-56 445.9 19.6 225 678-908 4-229 (233)
7 3rqc_A Probable lipoamide acyl 100.0 3.1E-50 1.1E-54 429.7 17.0 216 677-909 5-221 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 1E-50 3.5E-55 438.1 12.0 226 676-908 10-237 (239)
9 1scz_A E2, dihydrolipoamide su 100.0 4.9E-41 1.7E-45 360.8 13.8 197 789-1045 35-232 (233)
10 3mae_A 2-oxoisovalerate dehydr 100.0 7.4E-41 2.5E-45 362.9 13.9 215 738-1043 29-244 (256)
11 1dpb_A Dihydrolipoyl-transacet 100.0 4.9E-40 1.7E-44 355.2 17.3 144 900-1044 100-243 (243)
12 2xt6_A 2-oxoglutarate decarbox 100.0 2.3E-40 8E-45 420.7 14.2 211 693-906 1-223 (1113)
13 2ii3_A Lipoamide acyltransfera 100.0 2.8E-40 9.5E-45 360.1 12.4 145 900-1044 115-259 (262)
14 3l60_A Branched-chain alpha-ke 100.0 9.8E-40 3.3E-44 353.0 15.8 145 900-1045 97-241 (250)
15 3b8k_A PDCE2;, dihydrolipoylly 100.0 5.6E-38 1.9E-42 338.7 10.3 145 900-1044 94-239 (239)
16 3rqc_A Probable lipoamide acyl 100.0 2E-37 7E-42 330.8 14.0 137 900-1045 87-223 (224)
17 3dva_I Dihydrolipoyllysine-res 100.0 5.8E-38 2E-42 364.3 0.0 145 900-1045 283-427 (428)
18 1q23_A Chloramphenicol acetylt 100.0 3.8E-35 1.3E-39 312.2 20.2 184 693-905 23-215 (219)
19 3cla_A Type III chloramphenico 100.0 1.3E-34 4.3E-39 307.1 20.4 187 693-904 18-210 (213)
20 2i9d_A Chloramphenicol acetylt 100.0 5.5E-33 1.9E-37 294.9 20.3 190 688-898 15-215 (217)
21 2xt6_A 2-oxoglutarate decarbox 100.0 1.3E-33 4.6E-38 358.9 5.1 201 787-1042 14-225 (1113)
22 1q23_A Chloramphenicol acetylt 99.9 4.4E-28 1.5E-32 257.9 13.7 127 900-1040 81-216 (219)
23 1zy8_K Pyruvate dehydrogenase 99.9 7.1E-29 2.4E-33 264.6 3.9 167 186-386 2-169 (229)
24 3cla_A Type III chloramphenico 99.9 8.5E-27 2.9E-31 247.1 15.0 129 900-1038 76-210 (213)
25 2i9d_A Chloramphenicol acetylt 99.9 7.2E-25 2.5E-29 232.6 13.8 127 900-1036 79-216 (217)
26 1zy8_K Pyruvate dehydrogenase 99.9 4.9E-26 1.7E-30 242.7 0.5 147 446-594 2-169 (229)
27 1y8o_B Dihydrolipoyllysine-res 99.7 8.2E-17 2.8E-21 156.3 13.4 91 176-268 16-107 (128)
28 2dne_A Dihydrolipoyllysine-res 99.7 9.9E-17 3.4E-21 151.8 10.7 83 184-268 4-87 (108)
29 3crk_C Dihydrolipoyllysine-res 99.7 4.2E-16 1.4E-20 141.9 12.5 79 186-266 4-83 (87)
30 2dnc_A Pyruvate dehydrogenase 99.7 2.9E-16 9.8E-21 146.1 11.4 80 186-267 6-86 (98)
31 1k8m_A E2 component of branche 99.6 7.8E-16 2.7E-20 141.9 11.1 77 187-265 4-80 (93)
32 1y8o_B Dihydrolipoyllysine-res 99.6 2.5E-15 8.5E-20 145.9 12.7 83 444-528 24-107 (128)
33 2dnc_A Pyruvate dehydrogenase 99.6 3.2E-15 1.1E-19 139.1 10.8 82 445-528 5-87 (98)
34 3crk_C Dihydrolipoyllysine-res 99.6 6.1E-15 2.1E-19 134.2 11.8 79 447-527 5-84 (87)
35 2dne_A Dihydrolipoyllysine-res 99.6 3.8E-15 1.3E-19 141.0 10.2 82 445-528 5-87 (108)
36 1ghj_A E2, E2, the dihydrolipo 99.6 5.6E-15 1.9E-19 131.8 9.9 75 188-264 2-76 (79)
37 1k8m_A E2 component of branche 99.6 1E-14 3.4E-19 134.4 10.2 78 447-526 4-81 (93)
38 1qjo_A Dihydrolipoamide acetyl 99.5 2.4E-14 8.3E-19 127.9 9.7 76 187-266 2-77 (80)
39 2l5t_A Lipoamide acyltransfera 99.5 2.2E-14 7.6E-19 127.2 9.3 75 188-264 2-76 (77)
40 1pmr_A Dihydrolipoyl succinylt 99.5 1.1E-15 3.9E-20 136.7 -0.5 75 188-264 3-77 (80)
41 1ghj_A E2, E2, the dihydrolipo 99.5 4.7E-14 1.6E-18 125.8 9.5 76 448-525 2-77 (79)
42 1iyu_A E2P, dihydrolipoamide a 99.5 2.6E-13 9E-18 120.9 10.7 73 188-265 2-74 (79)
43 1qjo_A Dihydrolipoamide acetyl 99.4 2.4E-13 8.3E-18 121.3 10.0 76 447-526 2-77 (80)
44 2l5t_A Lipoamide acyltransfera 99.4 2.3E-13 8E-18 120.6 9.2 75 448-524 2-76 (77)
45 1pmr_A Dihydrolipoyl succinylt 99.4 1E-14 3.5E-19 130.5 -0.5 76 448-525 3-78 (80)
46 1gjx_A Pyruvate dehydrogenase; 99.4 1.1E-13 3.8E-18 123.9 4.8 76 187-265 2-77 (81)
47 1iyu_A E2P, dihydrolipoamide a 99.4 1.6E-12 5.5E-17 115.8 10.1 74 448-526 2-75 (79)
48 1gjx_A Pyruvate dehydrogenase; 99.3 1.1E-12 3.8E-17 117.4 4.9 76 447-525 2-77 (81)
49 2k7v_A Dihydrolipoyllysine-res 99.3 3.5E-13 1.2E-17 122.0 0.6 71 188-266 3-73 (85)
50 2k7v_A Dihydrolipoyllysine-res 99.2 3.9E-12 1.3E-16 115.1 1.1 72 448-527 3-74 (85)
51 2jku_A Propionyl-COA carboxyla 99.2 1E-11 3.5E-16 114.5 3.3 84 179-264 7-94 (94)
52 1z6h_A Biotin/lipoyl attachmen 99.1 1.5E-10 5E-15 100.9 9.1 63 200-264 6-68 (72)
53 2kcc_A Acetyl-COA carboxylase 99.1 7.3E-11 2.5E-15 106.5 7.1 63 200-265 12-74 (84)
54 2dn8_A Acetyl-COA carboxylase 99.1 3.5E-10 1.2E-14 105.4 8.9 63 200-265 24-86 (100)
55 2eq9_C Pyruvate dehydrogenase 99.0 1.2E-10 4E-15 90.6 4.2 39 347-385 2-40 (41)
56 3rnm_E Lipoamide acyltransfera 99.0 1E-10 3.4E-15 97.3 3.4 44 343-386 5-48 (58)
57 2kcc_A Acetyl-COA carboxylase 99.0 3.4E-10 1.1E-14 102.1 7.1 65 460-527 12-76 (84)
58 1z6h_A Biotin/lipoyl attachmen 99.0 8.5E-10 2.9E-14 96.0 9.0 64 460-525 6-69 (72)
59 2d5d_A Methylmalonyl-COA decar 99.0 1E-09 3.6E-14 95.8 9.4 63 200-264 12-74 (74)
60 2eq8_C Pyruvate dehydrogenase 99.0 1.9E-10 6.4E-15 88.9 4.0 38 348-385 2-39 (40)
61 2jku_A Propionyl-COA carboxyla 99.0 1E-10 3.5E-15 107.8 3.0 79 444-524 12-94 (94)
62 2eq7_C 2-oxoglutarate dehydrog 99.0 1.8E-10 6.1E-15 89.0 3.5 38 348-385 2-39 (40)
63 1bdo_A Acetyl-COA carboxylase; 99.0 7.9E-10 2.7E-14 98.5 7.9 57 206-264 24-80 (80)
64 2ejm_A Methylcrotonoyl-COA car 99.0 1.2E-09 4.1E-14 101.6 9.1 65 200-266 21-85 (99)
65 1dcz_A Transcarboxylase 1.3S s 99.0 1.2E-09 4.1E-14 96.4 8.5 63 200-264 15-77 (77)
66 1w85_I Dihydrolipoyllysine-res 99.0 3.6E-10 1.2E-14 91.3 4.0 42 345-386 6-47 (49)
67 2dn8_A Acetyl-COA carboxylase 98.9 2.1E-09 7.1E-14 100.2 8.9 64 460-526 24-87 (100)
68 1bal_A Dihydrolipoamide succin 98.9 3.2E-10 1.1E-14 92.3 2.9 42 345-386 9-50 (51)
69 2d5d_A Methylmalonyl-COA decar 98.9 5.2E-09 1.8E-13 91.3 9.2 63 460-524 12-74 (74)
70 1bdo_A Acetyl-COA carboxylase; 98.9 2.9E-09 9.9E-14 94.8 7.3 57 466-524 24-80 (80)
71 1dcz_A Transcarboxylase 1.3S s 98.9 5.4E-09 1.9E-13 92.2 8.3 63 460-524 15-77 (77)
72 3n6r_A Propionyl-COA carboxyla 98.8 3.6E-09 1.2E-13 130.1 9.5 62 201-264 620-681 (681)
73 2coo_A Lipoamide acyltransfera 98.8 1.6E-09 5.4E-14 93.8 4.1 43 344-386 14-56 (70)
74 2f60_K Pyruvate dehydrogenase 98.8 1.3E-09 4.6E-14 92.6 3.0 42 344-385 8-49 (64)
75 2ejm_A Methylcrotonoyl-COA car 98.8 9.4E-09 3.2E-13 95.5 9.0 66 460-527 21-86 (99)
76 3va7_A KLLA0E08119P; carboxyla 98.8 8E-09 2.7E-13 133.8 9.5 60 202-263 1176-1235(1236)
77 1w4i_A Pyruvate dehydrogenase 98.8 3.6E-09 1.2E-13 89.5 4.1 41 345-385 4-44 (62)
78 3hbl_A Pyruvate carboxylase; T 98.8 1E-08 3.4E-13 132.4 9.4 63 201-265 1085-1147(1150)
79 3u9t_A MCC alpha, methylcroton 98.7 1.2E-09 4.2E-14 134.2 0.0 63 201-265 610-672 (675)
80 3n6r_A Propionyl-COA carboxyla 98.7 2E-08 6.9E-13 123.5 9.1 62 461-524 620-681 (681)
81 2eq9_C Pyruvate dehydrogenase 98.7 3.5E-09 1.2E-13 82.2 0.5 39 555-593 2-40 (41)
82 3va7_A KLLA0E08119P; carboxyla 98.6 3.7E-08 1.3E-12 127.6 9.2 61 461-523 1175-1235(1236)
83 2eq7_C 2-oxoglutarate dehydrog 98.6 3.7E-09 1.3E-13 81.6 -0.3 37 556-592 2-38 (40)
84 2eq8_C Pyruvate dehydrogenase 98.6 4.3E-09 1.5E-13 81.3 -0.3 37 556-592 2-38 (40)
85 3rnm_E Lipoamide acyltransfera 98.6 4.9E-09 1.7E-13 87.2 -0.2 42 552-593 6-47 (58)
86 1bal_A Dihydrolipoamide succin 98.6 1.3E-08 4.5E-13 82.8 2.2 42 552-593 8-49 (51)
87 3hbl_A Pyruvate carboxylase; T 98.6 5.9E-08 2E-12 125.3 9.0 64 461-526 1085-1148(1150)
88 1zko_A Glycine cleavage system 98.6 7.3E-08 2.5E-12 94.3 7.4 72 189-267 38-116 (136)
89 3u9t_A MCC alpha, methylcroton 98.5 8.8E-09 3E-13 126.6 0.0 64 461-526 610-673 (675)
90 1w85_I Dihydrolipoyllysine-res 98.5 1.5E-08 5E-13 81.8 0.3 41 553-593 6-46 (49)
91 2k32_A A; NMR {Campylobacter j 98.5 2.2E-07 7.5E-12 88.5 7.2 65 200-266 8-102 (116)
92 3bg3_A Pyruvate carboxylase, m 98.4 5.7E-08 2E-12 119.0 3.4 66 195-263 652-717 (718)
93 2coo_A Lipoamide acyltransfera 98.4 3.3E-08 1.1E-12 85.6 -0.2 43 552-594 14-56 (70)
94 2qf7_A Pyruvate carboxylase pr 98.4 2.3E-07 7.8E-12 120.2 5.9 62 201-264 1103-1164(1165)
95 1w4i_A Pyruvate dehydrogenase 98.3 3.2E-08 1.1E-12 83.7 -2.4 41 554-594 5-45 (62)
96 2k32_A A; NMR {Campylobacter j 98.3 8.2E-07 2.8E-11 84.5 6.8 65 460-526 8-102 (116)
97 1zko_A Glycine cleavage system 98.3 8.3E-07 2.8E-11 86.8 6.9 71 449-527 38-116 (136)
98 2f60_K Pyruvate dehydrogenase 98.3 9.4E-08 3.2E-12 81.2 -0.5 40 554-593 10-49 (64)
99 3bg3_A Pyruvate carboxylase, m 98.2 3E-07 1E-11 112.7 2.9 61 461-523 657-717 (718)
100 3a7l_A H-protein, glycine clea 98.2 2.4E-06 8.2E-11 82.9 7.0 73 188-267 29-108 (128)
101 2qf7_A Pyruvate carboxylase pr 98.1 1E-06 3.5E-11 114.1 5.3 62 461-524 1103-1164(1165)
102 1hpc_A H protein of the glycin 98.1 1.5E-06 5.3E-11 84.5 5.1 73 188-267 28-107 (131)
103 1onl_A Glycine cleavage system 98.1 2.7E-06 9.3E-11 82.4 6.8 73 188-267 28-107 (128)
104 1hpc_A H protein of the glycin 97.7 1.5E-05 5.1E-10 77.5 3.9 71 449-527 29-107 (131)
105 1onl_A Glycine cleavage system 97.7 3.4E-05 1.1E-09 74.8 6.2 72 449-527 29-107 (128)
106 3a7l_A H-protein, glycine clea 97.7 3.3E-05 1.1E-09 74.9 5.7 73 448-527 29-108 (128)
107 3ne5_B Cation efflux system pr 97.3 0.00035 1.2E-08 80.9 8.4 64 200-265 128-240 (413)
108 2f1m_A Acriflavine resistance 97.2 0.00016 5.5E-09 78.8 4.0 64 200-265 29-165 (277)
109 3klr_A Glycine cleavage system 97.2 0.00043 1.5E-08 66.5 6.2 64 202-266 32-102 (125)
110 3lnn_A Membrane fusion protein 97.2 0.00059 2E-08 77.1 8.1 64 200-265 64-204 (359)
111 3fpp_A Macrolide-specific effl 97.1 0.00052 1.8E-08 77.0 7.0 64 200-265 38-189 (341)
112 3mxu_A Glycine cleavage system 97.0 0.00079 2.7E-08 65.9 6.2 65 202-267 54-125 (143)
113 3ne5_B Cation efflux system pr 97.0 0.0011 3.9E-08 76.6 8.8 65 460-526 128-241 (413)
114 2f1m_A Acriflavine resistance 97.0 0.00045 1.5E-08 75.2 4.7 65 460-526 29-166 (277)
115 3tzu_A GCVH, glycine cleavage 96.9 0.00086 2.9E-08 65.4 5.4 64 202-266 49-119 (137)
116 3lnn_A Membrane fusion protein 96.9 0.0015 5.2E-08 73.7 8.1 65 460-526 64-205 (359)
117 3klr_A Glycine cleavage system 96.8 0.0013 4.3E-08 63.3 6.0 47 462-510 32-79 (125)
118 3fpp_A Macrolide-specific effl 96.8 0.0015 5.2E-08 73.2 7.3 64 460-525 38-189 (341)
119 1vf7_A Multidrug resistance pr 96.8 0.00062 2.1E-08 77.6 3.7 64 200-265 50-172 (369)
120 3mxu_A Glycine cleavage system 96.7 0.002 6.8E-08 63.1 6.0 47 462-509 54-100 (143)
121 3hgb_A Glycine cleavage system 96.6 0.0028 9.7E-08 62.7 6.3 65 202-267 59-130 (155)
122 3tzu_A GCVH, glycine cleavage 96.5 0.0022 7.6E-08 62.5 5.3 45 462-507 49-93 (137)
123 1vf7_A Multidrug resistance pr 96.4 0.0019 6.6E-08 73.5 4.8 65 460-526 50-173 (369)
124 3hgb_A Glycine cleavage system 96.0 0.0063 2.2E-07 60.2 5.5 45 462-507 59-103 (155)
125 4dk0_A Putative MACA; alpha-ha 95.7 0.00069 2.3E-08 76.9 -3.2 31 234-264 156-189 (369)
126 4dk0_A Putative MACA; alpha-ha 95.0 0.0021 7.1E-08 72.8 -2.4 31 494-524 156-189 (369)
127 3cdx_A Succinylglutamatedesucc 94.5 0.1 3.5E-06 59.0 9.9 61 202-266 275-339 (354)
128 3na6_A Succinylglutamate desuc 94.3 0.12 4E-06 58.0 9.6 61 201-265 264-328 (331)
129 3fmc_A Putative succinylglutam 93.6 0.14 4.9E-06 58.1 8.8 61 201-265 297-363 (368)
130 2o95_A 26S proteasome non-ATPa 93.5 0.2 6.9E-06 51.3 9.0 98 3-130 16-129 (187)
131 3cdx_A Succinylglutamatedesucc 92.9 0.25 8.4E-06 55.8 9.2 59 464-526 277-339 (354)
132 3na6_A Succinylglutamate desuc 92.6 0.24 8.1E-06 55.5 8.6 59 464-526 267-329 (331)
133 1f3z_A EIIA-GLC, glucose-speci 92.1 0.16 5.4E-06 50.9 5.5 59 200-264 19-116 (161)
134 3fmc_A Putative succinylglutam 91.7 0.35 1.2E-05 54.9 8.6 58 464-525 300-363 (368)
135 2gpr_A Glucose-permease IIA co 90.8 0.22 7.5E-06 49.5 5.0 59 200-264 14-111 (154)
136 1f3z_A EIIA-GLC, glucose-speci 90.1 0.34 1.2E-05 48.4 5.7 60 460-525 19-117 (161)
137 1ax3_A Iiaglc, glucose permeas 89.8 0.19 6.5E-06 50.4 3.6 59 200-264 19-116 (162)
138 4e0q_A COP9 signalosome comple 89.5 0.49 1.7E-05 46.3 6.3 99 3-130 14-125 (141)
139 2gpr_A Glucose-permease IIA co 88.7 0.37 1.3E-05 47.9 4.7 59 461-525 15-112 (154)
140 2qj8_A MLR6093 protein; struct 88.2 1.3 4.3E-05 49.5 9.3 60 201-264 264-327 (332)
141 4b4t_U RPN8, 26S proteasome re 86.5 1.4 4.7E-05 49.4 8.3 87 3-113 14-114 (338)
142 1ax3_A Iiaglc, glucose permeas 86.4 0.5 1.7E-05 47.3 4.1 60 460-525 19-117 (162)
143 2xha_A NUSG, transcription ant 86.1 0.82 2.8E-05 46.8 5.6 33 206-246 22-54 (193)
144 2qj8_A MLR6093 protein; struct 82.8 2.5 8.4E-05 47.1 8.2 59 463-525 266-328 (332)
145 2xha_A NUSG, transcription ant 82.0 1.7 5.8E-05 44.5 5.8 33 466-506 22-54 (193)
146 4b4t_V 26S proteasome regulato 80.2 4.5 0.00015 44.6 9.0 106 3-131 33-146 (306)
147 3d4r_A Domain of unknown funct 79.3 3.4 0.00012 41.0 6.7 49 461-511 108-157 (169)
148 3d4r_A Domain of unknown funct 78.9 2.5 8.6E-05 42.0 5.6 49 201-251 108-157 (169)
149 2xhc_A Transcription antitermi 77.4 2.5 8.6E-05 47.5 5.9 46 461-514 171-221 (352)
150 2znr_A AMSH-like protease; met 74.9 7.2 0.00025 39.5 8.0 86 5-111 19-111 (178)
151 2auk_A DNA-directed RNA polyme 74.6 3.5 0.00012 42.3 5.6 41 211-253 66-106 (190)
152 2xhc_A Transcription antitermi 70.8 4.7 0.00016 45.2 6.0 32 466-505 62-93 (352)
153 3our_B EIIA, phosphotransferas 66.6 7.6 0.00026 39.4 5.9 59 461-525 42-139 (183)
154 2auk_A DNA-directed RNA polyme 66.3 6.7 0.00023 40.2 5.6 46 466-515 63-108 (190)
155 2kks_A Uncharacterized protein 63.3 17 0.00056 35.3 7.6 83 4-105 9-97 (146)
156 2kcq_A MOV34/MPN/PAD-1 family; 51.1 37 0.0013 33.0 7.8 81 4-103 8-97 (153)
157 3lu0_D DNA-directed RNA polyme 49.9 13 0.00045 48.1 5.2 41 211-253 1005-1045(1407)
158 2bco_A Succinylglutamate desuc 45.5 18 0.00061 40.5 5.0 49 211-266 281-329 (350)
159 3rzv_A STAM-binding protein; u 43.1 68 0.0023 33.2 8.5 50 75-129 108-157 (211)
160 3our_B EIIA, phosphotransferas 40.9 15 0.00051 37.3 3.0 22 205-228 118-139 (183)
161 3lu0_D DNA-directed RNA polyme 39.1 22 0.00076 46.1 4.8 46 466-515 1002-1047(1407)
162 1uou_A Thymidine phosphorylase 31.6 52 0.0018 38.3 6.0 43 226-268 366-437 (474)
163 2dsj_A Pyrimidine-nucleoside ( 28.4 58 0.002 37.3 5.6 42 486-528 322-394 (423)
164 1brw_A PYNP, protein (pyrimidi 28.2 62 0.0021 37.2 5.8 42 487-528 330-402 (433)
165 1brw_A PYNP, protein (pyrimidi 27.6 67 0.0023 37.0 6.0 43 226-268 329-402 (433)
166 1qpo_A Quinolinate acid phosph 27.3 38 0.0013 36.8 3.7 23 205-229 73-95 (284)
167 2dsj_A Pyrimidine-nucleoside ( 27.3 63 0.0022 37.0 5.6 42 226-268 322-394 (423)
168 1x1o_A Nicotinate-nucleotide p 26.5 37 0.0013 36.9 3.4 23 205-229 74-96 (286)
169 3tqv_A Nicotinate-nucleotide p 26.2 38 0.0013 36.8 3.4 23 205-229 77-99 (287)
170 2bco_A Succinylglutamate desuc 25.5 39 0.0013 37.7 3.4 49 471-526 281-329 (350)
171 3l0g_A Nicotinate-nucleotide p 25.4 40 0.0014 36.8 3.4 23 205-229 86-108 (300)
172 1o4u_A Type II quinolic acid p 25.2 35 0.0012 37.1 2.9 23 205-229 73-95 (285)
173 2tpt_A Thymidine phosphorylase 24.8 62 0.0021 37.3 5.0 42 487-528 335-407 (440)
174 3h5q_A PYNP, pyrimidine-nucleo 24.0 80 0.0027 36.3 5.7 37 488-524 334-401 (436)
175 3gnn_A Nicotinate-nucleotide p 23.9 44 0.0015 36.5 3.4 22 205-228 88-109 (298)
176 2b7n_A Probable nicotinate-nuc 23.3 50 0.0017 35.5 3.7 22 205-228 60-81 (273)
177 3paj_A Nicotinate-nucleotide p 22.9 48 0.0016 36.6 3.4 22 205-228 110-131 (320)
178 1qap_A Quinolinic acid phospho 22.1 50 0.0017 36.0 3.4 23 205-229 87-109 (296)
179 3h5q_A PYNP, pyrimidine-nucleo 20.8 50 0.0017 38.0 3.2 19 246-264 383-401 (436)
180 2tpt_A Thymidine phosphorylase 20.8 62 0.0021 37.3 3.9 43 226-268 334-407 (440)
181 1oi0_A AF2198, hypothetical pr 20.2 1.2E+02 0.004 28.3 5.2 27 80-106 61-87 (124)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=6.4e-80 Score=715.98 Aligned_cols=401 Identities=32% Similarity=0.513 Sum_probs=39.5
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.++|+||+||++|+||+|++|+ |++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus 2 ~~~i~mP~lg~~~~eg~i~~w~--v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 2 AFEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeeEEcCCCCCCCccEEEEEEE--cCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 4689999999999999999999 99999999999999999999999999999999999999999999999999999865
Q ss_pred Cccccccc-----cc---cccc-c--CC------CC--C--C-CCCCCCCCCCccccccCCCCCCCcCccccCCCCCccc
Q psy6394 527 DEGVAAEE-----AD---SLDR-K--AA------PG--V--S-EVNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVL 584 (1045)
Q Consensus 527 ~~~~~~~~-----~~---~~~~-~--~~------~~--~--~-~~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~ 584 (1045)
++..+... .. +.+. . +. +. . . ......+++||++||||+|+||||+.|+|||++|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~ 159 (428)
T 3dva_I 80 GYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVL 159 (428)
T ss_dssp ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCC
T ss_pred CccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCcee
Confidence 44321110 00 0000 0 00 00 0 0 0012346899999999999999999999999999999
Q ss_pred hHhHHhhhCCCCCCCCCCccccccccccceeeccccccccccccccccCCCccccccccccccccccchhhhcccCCCCC
Q psy6394 585 KEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSD 664 (1045)
Q Consensus 585 k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~d~~~~~~v~~~~~~~~~~~~~~ 664 (1045)
|+||++|++.......++.+++ . ...++
T Consensus 160 k~DV~~~~~~~~~~~~~~~~~~--~-------------------------------------------------~~~~~- 187 (428)
T 3dva_I 160 KEDIDAFLAGGAKPAPAAAEEK--A-------------------------------------------------APAAA- 187 (428)
T ss_dssp TTTTTTTSCC----------------------------------------------------------------------
T ss_pred HHHHHHHhhccccccccccccc--c-------------------------------------------------ccCCC-
Confidence 9999999764321100000000 0 00000
Q ss_pred CCCCCcccccCCcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHH
Q psy6394 665 ETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKAL 743 (1045)
Q Consensus 665 ~~~p~~~~~~~~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAv 743 (1045)
.+. ........+++||++|||.||++|.+| +++||+|++.+||+|+|+++|+++++..++.+ .|+||++|++||+
T Consensus 188 --~~~-~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk~~~~~~~~~g-~kls~~~~~ikAv 263 (428)
T 3dva_I 188 --KPA-TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKG-IKLTFLPYVVKAL 263 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --Ccc-ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHHHhhhhHhhcC-CCcCHHHHHHHHH
Confidence 000 000112366789999999999999999 79999999999999999999999997655556 9999999999999
Q ss_pred HHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCc
Q psy6394 744 SLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGT 823 (1045)
Q Consensus 744 a~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggT 823 (1045)
++||++||+||++|++++++|++++++|||+||++++||++|||++++.+++.+|+++++++.+++|+|+|+++|++|||
T Consensus 264 a~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggt 343 (428)
T 3dva_I 264 VSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGAS 343 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCE
Confidence 99999999999999865578999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCccceeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccc
Q psy6394 824 ISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILV 903 (1045)
Q Consensus 824 ftISNlG~~G~~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile 903 (1045)
|||||+|+||+++|+||||+||+|||++|+++++|++ .+|++++|++|+++|+||||||||+++++||+.|+++ |+
T Consensus 344 ftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~---Le 419 (428)
T 3dva_I 344 CTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRL---LS 419 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeeeEEEEEEecccccchHHHHHHHHHHHHH---Hh
Confidence 9999999999999999999999999999999999999 6889999999999999999999999999999999999 99
Q ss_pred cCCcce
Q psy6394 904 NPDHNI 909 (1045)
Q Consensus 904 ~p~v~I 909 (1045)
+|..++
T Consensus 420 ~P~~ll 425 (428)
T 3dva_I 420 DPELLL 425 (428)
T ss_dssp ------
T ss_pred CHHHHh
Confidence 998664
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-53 Score=457.73 Aligned_cols=227 Identities=29% Similarity=0.437 Sum_probs=216.7
Q ss_pred CcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccc
Q psy6394 676 EASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILN 754 (1045)
Q Consensus 676 ~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lN 754 (1045)
+..+++|++++||+||++|.+| +++||+|++.++|+|+|+++|+++|+.+.+..+.|+|+++|++||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 4578899999999999999999 799999999999999999999999986655433899999999999999999999999
Q ss_pred eEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccc
Q psy6394 755 ASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG 834 (1045)
Q Consensus 755 a~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~ 834 (1045)
++|++ +.+++++++|||+||++++||+||||+|+|.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+
T Consensus 96 a~~~~--~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 173 (256)
T 3mae_A 96 STWAG--DKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp EEEET--TEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred hEEec--CEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence 99984 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 835 TLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 835 ~~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
.+|+|||||||+||||+|+++++|+++ +|+++++++|+++|++|||||||+++|+||+.++++ +|+|..+
T Consensus 174 ~~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~---Le~P~~~ 243 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKAN---VEKISKE 243 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHTCCTT
T ss_pred cceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHH---HhChHHH
Confidence 999999999999999999999999994 689999999999999999999999999999999999 9999754
No 3
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=1.1e-52 Score=457.79 Aligned_cols=229 Identities=42% Similarity=0.751 Sum_probs=218.1
Q ss_pred CcceeeecCchhhHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394 676 EASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA 755 (1045)
Q Consensus 676 ~~~~~~pls~~rk~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa 755 (1045)
...+++|++++||.||++|.+|+++||+|++.++|+|+|+++|+++|+...+.| .|+|+++|++||+++||++||+||+
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g-~kls~~~~~ikAva~Al~~~P~~Na 107 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARG-IKLSFMPFFLKAASLGLLQFPILNA 107 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTT-CCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred CCcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhcc-CCccHHHHHHHHHHHHHHhChHhhE
Confidence 356788999999999999999977999999999999999999999997555555 8999999999999999999999999
Q ss_pred EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394 756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT 835 (1045)
Q Consensus 756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~ 835 (1045)
+|+++++++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.
T Consensus 108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~ 187 (262)
T 2ii3_A 108 SVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGT 187 (262)
T ss_dssp EECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCS
T ss_pred EEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCcc
Confidence 99875578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
+|+|||||||+||||+|+++++|+++.||+++++++|+++|+||||+|||+++|+||+.++++ +++|..+
T Consensus 188 ~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---Le~P~~l 257 (262)
T 2ii3_A 188 YAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSY---LENPAFM 257 (262)
T ss_dssp CEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHSTHHH
T ss_pred ceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHH---HhCHHHH
Confidence 999999999999999999999999966789999999999999999999999999999999999 9998754
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=5e-52 Score=448.84 Aligned_cols=228 Identities=25% Similarity=0.414 Sum_probs=217.4
Q ss_pred cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394 677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA 755 (1045)
Q Consensus 677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa 755 (1045)
..+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+...+.| .++|+++|++||+++||++||+||+
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g-~kls~~~~~ikA~~~Al~~~P~~Na 92 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAG-VKLTVLPLLLKACAYLLKELPDFNS 92 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTT-CCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhcc-CCCChHHHHHHHHHHHHHhChHhhE
Confidence 456789999999999999999 79999999999999999999999997655556 8999999999999999999999999
Q ss_pred EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394 756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT 835 (1045)
Q Consensus 756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~ 835 (1045)
+|+++++++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+.
T Consensus 93 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~ 172 (243)
T 1dpb_A 93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT 172 (243)
T ss_dssp EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred EEecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcc
Confidence 99865578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
+|+|||||||+||||+|+++++|+++ +|+++++++|+++|++|||+|||+++|+||+.++++ +|+|..++
T Consensus 173 ~~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~ll 242 (243)
T 1dpb_A 173 AFTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDL---LADIRAIL 242 (243)
T ss_dssp CCCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHH---HHCGGGGG
T ss_pred ceECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHH---HhCHHhhh
Confidence 99999999999999999999999994 789999999999999999999999999999999999 99997653
No 5
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=2.2e-52 Score=451.65 Aligned_cols=218 Identities=23% Similarity=0.391 Sum_probs=209.7
Q ss_pred ecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCC
Q psy6394 682 PIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPT 760 (1045)
Q Consensus 682 pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~ 760 (1045)
|++++||+||++|.+| +++||+|++.+||+|+|+++|+++|+ .+ .|+|+++|++||+++||++||+||++|+++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~-~kls~~~~iikAva~AL~~~P~~Na~~~~~ 92 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AA-PEITPFALTLRLLVIALKHNVILNSTWVDS 92 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TC-TTCCHHHHHHHHHHHHHHHCGGGSEEEECT
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHHhCHHhhEEEecc
Confidence 9999999999999999 79999999999999999999999874 35 899999999999999999999999999864
Q ss_pred --CceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeec
Q psy6394 761 --QENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ 838 (1045)
Q Consensus 761 --~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~t 838 (1045)
+++|++++++|||+||++++||++|||+|++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.+|+
T Consensus 93 ~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ft 172 (250)
T 3l60_A 93 GEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGV 172 (250)
T ss_dssp TTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCC
T ss_pred CCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeE
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 839 PIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 839 pii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
|||||||+||||+|+++++|++ .+|+++++++|+++|+||||||||+++|+||+.++++ +|+|..+
T Consensus 173 pIinppq~aIL~vG~i~~~pv~-~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~---Le~P~~l 238 (250)
T 3l60_A 173 PVINHPEAAILGLGAIKPRPVV-VGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDL---IESPETA 238 (250)
T ss_dssp CCCCTTCSEEEEECCCEEEEEE-ETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHSHHHH
T ss_pred eeeCCCCceEEEecceEEEeEE-ECCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHH---HhCHHHH
Confidence 9999999999999999999999 4789999999999999999999999999999999999 9998654
No 6
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=5.4e-52 Score=445.88 Aligned_cols=225 Identities=25% Similarity=0.453 Sum_probs=214.1
Q ss_pred ceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceE
Q psy6394 678 SNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNAS 756 (1045)
Q Consensus 678 ~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~ 756 (1045)
.+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+.+.+..|.|+|+++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 45679999999999999999 78999999999999999999999997654433389999999999999999999999999
Q ss_pred EcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCcccee
Q psy6394 757 IDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTL 836 (1045)
Q Consensus 757 ~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~ 836 (1045)
|++ +++++++++|||+||++++||++|||++++.+++.+|+++++++++++|+|+|+++|++||||||||+|+||+.+
T Consensus 84 ~~~--~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~ 161 (233)
T 1scz_A 84 IDG--DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp EET--TEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred EeC--CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence 984 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 837 VQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 837 ~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
|+|||||||+||||+|+++++|++ .+|+++++++|+++|++|||+|||+++|+||+.++++ +|+|..+
T Consensus 162 ~tpIin~pq~aIl~vG~~~~~pv~-~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~l 229 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMA-VNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKEL---LEDPTRL 229 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHCTTHH
T ss_pred eEcccCCCCcEEEEccccEEEEEE-ECCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHH---HhCHHHH
Confidence 999999999999999999999999 4789999999999999999999999999999999999 9999754
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=3.1e-50 Score=429.74 Aligned_cols=216 Identities=27% Similarity=0.443 Sum_probs=206.3
Q ss_pred cceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccce
Q psy6394 677 ASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNA 755 (1045)
Q Consensus 677 ~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa 755 (1045)
..+++|++++||+||++|.+| +++||+|++.++|+|+|+++|+++|+ .| .|+|+++|++||+++||++||+||+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~----~g-~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA----RN-RKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT----TT-CCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 467889999999999999999 89999999999999999999999885 25 8999999999999999999999999
Q ss_pred EEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccce
Q psy6394 756 SIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGT 835 (1045)
Q Consensus 756 ~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~ 835 (1045)
+|+++.+++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+.
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~ 159 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGI 159 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCS
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCcc
Confidence 99875568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcce
Q psy6394 836 LVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNI 909 (1045)
Q Consensus 836 ~~tpii~~pq~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~I 909 (1045)
+|+|||||||+||||+|+++++|+ +++|+++|++|||+|||+++|+||+.++++ +|+|..++
T Consensus 160 ~~tpiin~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~---le~p~~ll 221 (224)
T 3rqc_A 160 MSTPIINYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKV---IEDPNAII 221 (224)
T ss_dssp EEECCCCTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHH---HTCTTTTT
T ss_pred ceEeccCCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHH---HhCHHHHh
Confidence 999999999999999999999886 789999999999999999999999999999 99998664
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=438.08 Aligned_cols=226 Identities=27% Similarity=0.365 Sum_probs=214.2
Q ss_pred CcceeeecCchhhHHHHHhhhc-CCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccc
Q psy6394 676 EASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILN 754 (1045)
Q Consensus 676 ~~~~~~pls~~rk~ia~~m~~S-~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lN 754 (1045)
+..+++|++++||.||++|.+| +++||+|++.++|+|+|+++|+++|+.... + .++|+++|++||+++||++||+||
T Consensus 10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~-~kls~~~~~ikAv~~Al~~~P~~N 87 (239)
T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG-R-SKISVNDFIIKASALACLKVPEAN 87 (239)
T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT-S-SCCCHHHHHHHHHHHHHHHCCCSC
T ss_pred CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc-c-CCCCHHHHHHHHHHHHHHhChHhh
Confidence 3467789999999999999999 899999999999999999999999975433 3 599999999999999999999999
Q ss_pred eEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccc
Q psy6394 755 ASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGG 834 (1045)
Q Consensus 755 a~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~ 834 (1045)
++|++ +++++++++|||+||++++||++|||+++|.+++.+|+++++++++++|+|+|+++|++||||||||+|++|+
T Consensus 88 a~~~~--~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~ 165 (239)
T 3b8k_A 88 SSWMD--TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGI 165 (239)
T ss_dssp TTSCC--CSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCC
T ss_pred EEEEC--CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCc
Confidence 99984 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccceeeEeeccceeEeEec-cCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcc
Q psy6394 835 TLVQPIIVPGQVCIVAFGKIQLLPRFD-AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHN 908 (1045)
Q Consensus 835 ~~~tpii~~pq~ailavG~i~~~p~~~-~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~ 908 (1045)
++|+||+||||+|||++|+++++|+++ .+|+++++++|+++|++|||+|||+++|+||+.++++ +|+|..+
T Consensus 166 ~~ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~---le~p~~l 237 (239)
T 3b8k_A 166 KNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKY---LEKPITM 237 (239)
T ss_dssp SSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHH---HHCTHHH
T ss_pred eeEECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHH---HhCHHhh
Confidence 999999999999999999999999995 5789999999999999999999999999999999999 9998654
No 9
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=4.9e-41 Score=360.82 Aligned_cols=197 Identities=23% Similarity=0.376 Sum_probs=169.5
Q ss_pred ccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCcee
Q psy6394 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIV 867 (1045)
Q Consensus 789 ~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~ 867 (1045)
++|...+.++++++++...+.+..|+++.+ ++ +.++. ++++.|.+
T Consensus 35 evdvt~l~~~r~~~k~~~~~~~g~kls~~~---------------------~~------ikA~~~Al~~~P~~------- 80 (233)
T 1scz_A 35 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMS---------------------FY------VKAVVEALKRYPEV------- 80 (233)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHSSCCCSHH---------------------HH------HHHHHHHHHHCTTT-------
T ss_pred EEEcHHHHHHHHHHHhhhhhhcCCcccHHH---------------------HH------HHHHHHHHHhChHh-------
Confidence 455667888888888755444455666543 22 23333 35677765
Q ss_pred EEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhh
Q psy6394 868 AKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSH 947 (1045)
Q Consensus 868 ~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~ 947 (1045)
|.+|.. ++|+++..+|+|+||++++||++|||+||+++++.+|+++++++++++|
T Consensus 81 -----Na~~~~--------------------~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar 135 (233)
T 1scz_A 81 -----NASIDG--------------------DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGR 135 (233)
T ss_dssp -----TCEEET--------------------TEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTT
T ss_pred -----hEEEeC--------------------CEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHH
Confidence 455531 2347888999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHH
Q psy6394 948 EGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027 (1045)
Q Consensus 948 ~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~ 1027 (1045)
+|+|+++||+||||||||+|++|+..|+|||||||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+
T Consensus 136 ~~kL~~~e~~ggtftISnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~~~g-~i~~r~~m~lsls~DHRviDGa~aa~ 214 (233)
T 1scz_A 136 DGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNG-QVEILPMMYLALSYDHRLIDGRESVG 214 (233)
T ss_dssp TTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred cCCCCccccCCCEEEEEeCCCCCccceEcccCCCCcEEEEccccEEEEEEECC-EEEEEEEEEEEEEEcceeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999775 89999999999999999999999999
Q ss_pred HHHHHHHhhcCcchhccC
Q psy6394 1028 AATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 1028 fl~~~k~~le~P~~ll~~ 1045 (1045)
||+.|+++||+|..||++
T Consensus 215 Fl~~lk~~le~p~~ll~~ 232 (233)
T 1scz_A 215 FLVTIKELLEDPTRLLLD 232 (233)
T ss_dssp HHHHHHHHHHCTTHHHHT
T ss_pred HHHHHHHHHhCHHHHhhc
Confidence 999999999999988764
No 10
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=7.4e-41 Score=362.87 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhCCccceEEcCCCceEEEcCCccEEEEEecCCCeeeeeecccccccHHHHHHHHHHHHhccccCCCCCC
Q psy6394 738 FFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPR 817 (1045)
Q Consensus 738 ~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~ 817 (1045)
.+.+.+.++....|.+.... ++|...+.++++++++..++....|+++.
T Consensus 29 ~ia~~m~~S~~~iP~~t~~~-------------------------------evDvt~l~~~r~~~k~~~~~~~g~kls~~ 77 (256)
T 3mae_A 29 AIAKHMSVSKQEIPHAWMMV-------------------------------EVDATGLVRYRNAVKDSFKKEEGYSLTYF 77 (256)
T ss_dssp HHHHHHHHHHHHSCEEEEEE-------------------------------EEECHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHhccCCeEEEEE-------------------------------EEEHHHHHHHHHHHHhhhhhhcCCCccHH
Confidence 45666667777778665433 45566788888888875544444566553
Q ss_pred ccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhh
Q psy6394 818 DIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWK 896 (1045)
Q Consensus 818 d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~ 896 (1045)
+++ +.++. ++++.|.+ |.+|..|
T Consensus 78 ---------------------~~i------ikAva~AL~~~P~~------------Na~~~~~----------------- 101 (256)
T 3mae_A 78 ---------------------AFF------IKAVAQALKEFPQL------------NSTWAGD----------------- 101 (256)
T ss_dssp ---------------------HHH------HHHHHHHHHHCTTT------------SEEEETT-----------------
T ss_pred ---------------------HHH------HHHHHHHHHhCHHh------------hhEEecC-----------------
Confidence 332 22333 34666764 5666422
Q ss_pred hcccccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceee
Q psy6394 897 SLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQP 976 (1045)
Q Consensus 897 ~~~~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~ 976 (1045)
+|+++..+||||||++++||+||||+|+|+++|.+|++++++|+++||+|+|.++|++||||||||+|++|++.|+|
T Consensus 102 ---~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftp 178 (256)
T 3mae_A 102 ---KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMG 178 (256)
T ss_dssp ---EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSEEEC
T ss_pred ---EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccceEc
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhc
Q psy6394 977 IIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLL 1043 (1045)
Q Consensus 977 iin~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll 1043 (1045)
||||||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+||+.|+++||||..|.
T Consensus 179 IInppq~aIL~vG~i~~~pv~~~g-~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~ 244 (256)
T 3mae_A 179 IINHPQAAILQVESIVKRPVIIDD-MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKEN 244 (256)
T ss_dssp CCCTTSSEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred ccCCCCceEEEecccEEEEEEECC-EEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHH
Confidence 999999999999999999999876 899999999999999999999999999999999999998764
No 11
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=4.9e-40 Score=355.20 Aligned_cols=144 Identities=27% Similarity=0.469 Sum_probs=139.7
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++..+|+|+||++++||++|||+|+|++++.+|+++++++++++|+|+|+++|++||||||||+|++|++.|+||||
T Consensus 100 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~tpIin 179 (243)
T 1dpb_A 100 ALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVN 179 (243)
T ss_dssp CEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCC
T ss_pred eEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceECccC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
|||+||||+|++.++||+++| ++++|++|+||||||||+|||++||+||+.|+++||+|..||+
T Consensus 180 ~pq~aIl~vG~~~~~pv~~~g-~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 180 APEVAILGVSKASMQPVWDGK-AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp TTSSEEEEECCCEEEEEECSS-SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred CCCCeEEEccccEEEEEEECC-eEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999765 8999999999999999999999999999999999999998875
No 12
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.3e-40 Score=420.72 Aligned_cols=211 Identities=20% Similarity=0.328 Sum_probs=175.6
Q ss_pred HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCC--ceEEEcCCc
Q psy6394 693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQ--ENILVNPDH 770 (1045)
Q Consensus 693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~--~~i~~~~~v 770 (1045)
+|.+|.++||+|++.++|+|+|+++|+++|+.+.+..+.|+|+++|++||+++||++||.||++|+++. +.|++++++
T Consensus 1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v 80 (1113)
T 2xt6_A 1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT 80 (1113)
T ss_dssp ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence 477888899999999999999999999999865554348999999999999999999999999998532 279999999
Q ss_pred cEEEEEecC--CC---eeeeeecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccc
Q psy6394 771 NISIAIDTK--HG---LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845 (1045)
Q Consensus 771 nIgiAV~t~--~G---L~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq 845 (1045)
||||||+++ +| |+||||||++.+++.+|+++++++++++|+|||+++|++||||||||+|+||+.+|+|||||||
T Consensus 81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq 160 (1113)
T 2xt6_A 81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ 160 (1113)
T ss_dssp CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence 999999997 56 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeeccceeEeEeccC-----CceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCC
Q psy6394 846 VCIVAFGKIQLLPRFDAE-----MRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906 (1045)
Q Consensus 846 ~ailavG~i~~~p~~~~~-----g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~ 906 (1045)
+||||+|+++++|+++.+ |+++++++|+++|+||||||||+++|+||+.++++ +++|.
T Consensus 161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~---Le~p~ 223 (1113)
T 2xt6_A 161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQL---LLDDD 223 (1113)
T ss_dssp SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHH---TTCHH
T ss_pred ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHH---HhCcH
Confidence 999999999999998531 68999999999999999999999999999999999 99865
No 13
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=2.8e-40 Score=360.14 Aligned_cols=145 Identities=48% Similarity=0.855 Sum_probs=139.5
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++..+||||||++++||++|||+||+++++.+|+++++++++++|+|+|+++||+||||||||+|++|+++|+||||
T Consensus 115 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~tPIin 194 (262)
T 2ii3_A 115 NITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVIL 194 (262)
T ss_dssp EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCEECCCC
T ss_pred EEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccceECccC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
|||+||||+|++.++||+++++++++|++|+||||||||+|||+++|+||+.|+++||||..||+
T Consensus 195 ppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~ 259 (262)
T 2ii3_A 195 PPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259 (262)
T ss_dssp TTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHH
T ss_pred CCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999974458999999999999999999999999999999999999998875
No 14
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=9.8e-40 Score=352.95 Aligned_cols=145 Identities=27% Similarity=0.442 Sum_probs=140.8
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++..+||||||++++||+||||+|+|++++.+|++++++|++++|+|+|.++||+||||||||+|++|++.|+||||
T Consensus 97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin 176 (250)
T 3l60_A 97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN 176 (250)
T ss_dssp EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
|||+||||+|++.++||+.+| ++++|++|+||||||||+|||++||+||+.|+++||||..|+.+
T Consensus 177 ppq~aIL~vG~i~~~pv~~~g-~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~ 241 (250)
T 3l60_A 177 HPEAAILGLGAIKPRPVVVGG-EVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLD 241 (250)
T ss_dssp TTCSEEEEECCCEEEEEEETT-EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTT
T ss_pred CCCceEEEecceEEEeEEECC-EEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCc
Confidence 999999999999999999876 89999999999999999999999999999999999999998754
No 15
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=338.70 Aligned_cols=145 Identities=30% Similarity=0.445 Sum_probs=138.9
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++..+|+|+||++++||++|||+|+|++++.+|+++++++++++|+|+|+++||+||||||||+|++|++.|+||||
T Consensus 94 ~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ftpiin 173 (239)
T 3b8k_A 94 VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIIN 173 (239)
T ss_dssp SSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCCCCCC
T ss_pred EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEECcCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEe-cCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhcc
Q psy6394 980 PRQVCIVAFGKIQLLPRFD-AEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLT 1044 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~-~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~ 1044 (1045)
|||+||||+|+++++||++ .++++++|++|+||||||||+|||++||+||+.|+++||||..||+
T Consensus 174 ~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 174 PPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp TTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred CCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 9999999999999999994 3348999999999999999999999999999999999999998875
No 16
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=2e-37 Score=330.83 Aligned_cols=137 Identities=28% Similarity=0.461 Sum_probs=132.4
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++..+|+|+||++++||+||||+|+|++++.+|+++++++++++|+|+|.++|++||||||||+|++|++.|+||||
T Consensus 87 ~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpiin 166 (224)
T 3rqc_A 87 VYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIIN 166 (224)
T ss_dssp CCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCCC
T ss_pred EEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEeccC
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
|||+||||+|++.++|+ |++|+||||||||+|||++||+||+.|+++||||..||++
T Consensus 167 ~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~ 223 (224)
T 3rqc_A 167 YPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYE 223 (224)
T ss_dssp TTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC-
T ss_pred CCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhc
Confidence 99999999999999886 7899999999999999999999999999999999999875
No 17
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=5.8e-38 Score=364.30 Aligned_cols=145 Identities=32% Similarity=0.581 Sum_probs=0.0
Q ss_pred cccccCCcceEEEEecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeec
Q psy6394 900 NILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV 979 (1045)
Q Consensus 900 ~ile~p~v~Igiav~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin 979 (1045)
+|+++.++|||+||++++||+||||+|+++++|.+|++++++|++++|+|+|.++||+||||||||+|+||+++|+||||
T Consensus 283 ~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin 362 (428)
T 3dva_I 283 EIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVIN 362 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcchhccC
Q psy6394 980 PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPALLLTQ 1045 (1045)
Q Consensus 980 ~pq~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~~ll~~ 1045 (1045)
|||+||||+|++.++||+.+| ++++|++|+||||||||+|||+++++||++|+++||||.+||++
T Consensus 363 ~pq~aIl~vG~i~~~pv~~~g-~i~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~ 427 (428)
T 3dva_I 363 HPEVAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427 (428)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCceEEEccccEEEEEEECC-EEEEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhc
Confidence 999999999999999999665 89999999999999999999999999999999999999999874
No 18
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=3.8e-35 Score=312.22 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=165.3
Q ss_pred HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccE
Q psy6394 693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNI 772 (1045)
Q Consensus 693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnI 772 (1045)
..-.+.++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||+||++|+ ++.+++++++||
T Consensus 23 ~~f~~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~--~~~i~~~~~v~i 90 (219)
T 1q23_A 23 EAFQSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMK--DGELVIWDSVHP 90 (219)
T ss_dssp HHHTTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEE--TTEEEEESCCEE
T ss_pred HHhcCCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEE--CCEEEEecccCe
Confidence 3445578999999999999999999853 4799999999999999999999999998 478999999999
Q ss_pred EEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCC-CccCCCceEeeccCCccceeecccccccc----
Q psy6394 773 SIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQPIIVPGQ---- 845 (1045)
Q Consensus 773 giAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~-~d~~ggTftISNlG~~G~~~~tpii~~pq---- 845 (1045)
|+|| ++++||++||++. ..+++.+|+++++++++++|+| +|++ +|+ ||||||||+|++| |+|++|+|+
T Consensus 91 giAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~---ft~i~~~~~~~~~ 165 (219)
T 1q23_A 91 CYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVS---FTSFDLNVANMDN 165 (219)
T ss_dssp EEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCC---CSEEEEEESCCTT
T ss_pred EEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcccc---ccccccCCCCCcc
Confidence 9999 9999999999986 5689999999999999999998 6976 899 9999999999976 566666664
Q ss_pred --eeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccC
Q psy6394 846 --VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905 (1045)
Q Consensus 846 --~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p 905 (1045)
++|+++|+++++ +| +++|+++|++|||+|||+++|+||+.++++ +|+|
T Consensus 166 ~~~pIi~~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~---le~~ 215 (219)
T 1q23_A 166 FFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQY---CDEW 215 (219)
T ss_dssp CCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HHHC
T ss_pred ceeEEEecccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHH---HhCc
Confidence 599999999865 23 699999999999999999999999999999 8875
No 19
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=1.3e-34 Score=307.14 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=164.9
Q ss_pred HhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEcCCccE
Q psy6394 693 SMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNI 772 (1045)
Q Consensus 693 ~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~~~vnI 772 (1045)
..-.+.++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||++|++|+ ++.+++++++||
T Consensus 18 ~~f~~~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~--~~~i~~~~~v~i 85 (213)
T 3cla_A 18 EFYRHRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIK--DDELIVWDSVDP 85 (213)
T ss_dssp HHHHHTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEE--TTEEEEESCCEE
T ss_pred HHHhCCCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEE--CCEEEEEeccce
Confidence 3444568999999999999999999852 5899999999999999999999999998 478999999999
Q ss_pred EEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhccccC-CCCC-CccCCCceEeeccCCccceeeccccccc---ce
Q psy6394 773 SIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQPIIVPG---QV 846 (1045)
Q Consensus 773 giAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~~-kl~~-~d~~ggTftISNlG~~G~~~~tpii~~p---q~ 846 (1045)
|+|| ++++||++||+++ +.+++.+|+++++++++++|++ +|++ +|++||||||||+|+++.+.++..++.+ .+
T Consensus 86 giAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~ 164 (213)
T 3cla_A 86 QFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFA 164 (213)
T ss_dssp EEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCS
T ss_pred eEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccc
Confidence 9999 9999999999987 5689999999999999999996 9988 7899999999999998765554333333 24
Q ss_pred eeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhccccccc
Q psy6394 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVN 904 (1045)
Q Consensus 847 ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~ 904 (1045)
+|+++|+++++ +| +++|+++|++|||+|||+++|+||+.++++ +|+
T Consensus 165 PIi~~G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~---le~ 210 (213)
T 3cla_A 165 PIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQEL---CNS 210 (213)
T ss_dssp CEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH---HTS
T ss_pred cEEEeeEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHH---HHh
Confidence 78999999765 23 699999999999999999999999999999 886
No 20
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-33 Score=294.86 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=164.8
Q ss_pred hHHHHHhhhcCCCCeeEEeecccchHHHHHHHHHHHHHHhccCcccChHHHHHHHHHHHHHhCCccceEEcCCCceEEEc
Q psy6394 688 KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVN 767 (1045)
Q Consensus 688 k~ia~~m~~S~~iP~~~~~~evD~t~l~~~r~~~~~~~~~~~~~klT~~~~likAva~aL~~~P~lNa~~~~~~~~i~~~ 767 (1045)
|+---....+.++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||++|++|++ ++.++++
T Consensus 15 R~~~f~~f~~~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~n~~~~~-~~~i~~~ 83 (217)
T 2i9d_A 15 RKENFNFFRHFQNPQLSITSEVECGGARQRAKA----------AGQSFFLHYLYAVLRAANEIPEFRYRIDP-DGRVVLY 83 (217)
T ss_dssp THHHHHHHTTCSBCEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHSGGGGEEECT-TSCEEEE
T ss_pred CHHHHHHHhCCCCceEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhCHHhheEEcC-CCEEEEe
Confidence 333334444578999999999999999999853 47999999999999999999999999983 3689999
Q ss_pred CCccEEEEE-ecCCCeeeeeecccccccHHHHHHHHHHHHhcccc-CCCCCC------ccCCCceEeeccCCccceeecc
Q psy6394 768 PDHNISIAI-DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHE-GKVLPR------DIQGGTISMSNVGNVGGTLVQP 839 (1045)
Q Consensus 768 ~~vnIgiAV-~t~~GL~vPvIr~ad~~sl~ei~~~l~~l~~~ar~-~kl~~~------d~~ggTftISNlG~~G~~~~tp 839 (1045)
+++|||+|| ++++||++||+.. ..+++.+|+++++++++++|+ |+|+++ |++||||||||+|+++.+.++.
T Consensus 84 ~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~ 162 (217)
T 2i9d_A 84 DTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITG 162 (217)
T ss_dssp SCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECC
T ss_pred cccCeEEEEEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeec
Confidence 999999999 9999999999864 568999999999999999998 599995 9999999999999988666654
Q ss_pred ccccc---ceeeEeeccceeEeEeccCCceeEEEeeeEEEeccceeecchhhhhhhhhhhhc
Q psy6394 840 IIVPG---QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898 (1045)
Q Consensus 840 ii~~p---q~ailavG~i~~~p~~~~~g~i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~ 898 (1045)
.++.+ .++|+++|++.++ +| +++|+++|++|||+|||+++|+||+.++++
T Consensus 163 ~~~~g~~~~~PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~ 215 (217)
T 2i9d_A 163 TQEKRSGNNYPLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDF 215 (217)
T ss_dssp CBCSTTCCSSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCccceEEEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHH
Confidence 45444 2479999999764 23 799999999999999999999999999987
No 21
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.97 E-value=1.3e-33 Score=358.90 Aligned_cols=201 Identities=20% Similarity=0.317 Sum_probs=150.5
Q ss_pred ecccccccHHHHHHHHHHHHhccccCCCCCCccCCCceEeeccCCccceeecccccccceeeEeec-cceeEeEeccCCc
Q psy6394 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFG-KIQLLPRFDAEMR 865 (1045)
Q Consensus 787 Ir~ad~~sl~ei~~~l~~l~~~ar~~kl~~~d~~ggTftISNlG~~G~~~~tpii~~pq~ailavG-~i~~~p~~~~~g~ 865 (1045)
..++|...+.++++++++...+.+..|+++. +++ +.++. ++++.|.+
T Consensus 14 ~~evDvt~l~~~R~~~k~~~~~~~g~kls~~---------------------~~i------ikAva~AL~~~P~~----- 61 (1113)
T 2xt6_A 14 VRAIPAKLMIDNRVVINNHLKRTRGGKISFT---------------------HLL------GYAIVQAVKKFPNM----- 61 (1113)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHTTCCCCCHH---------------------HHH------HHHHHHHHHHCGGG-----
T ss_pred EEEEehHHHHHHHHHHHhhhhhhcCCCccHH---------------------HHH------HHHHHHHHHhChHh-----
Confidence 3467777888888899875554455566553 332 22332 35677764
Q ss_pred eeEEEeeeEEEeccceeecchhhhhhhhhhhhcccccccCCcceEEEEecC--Cc---eeeeeecccCCCCHHHHHHHHH
Q psy6394 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAIDTK--HG---LVVPNIKSVNKLSLLDITRELL 940 (1045)
Q Consensus 866 i~~~~~m~lslt~DhRviDGa~aa~fl~~~~~~~~ile~p~v~Igiav~~~--~G---L~vPvi~~a~~~sl~~ia~~~~ 940 (1045)
|.+|..|. |. .+|+.+..+||||||+++ +| |+|||||||++|+|.+|+++++
T Consensus 62 -------Na~~~~~~----~~------------~~i~~~~~vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~ 118 (1113)
T 2xt6_A 62 -------NRHFAVVD----GK------------PTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYE 118 (1113)
T ss_dssp -------GCEEEESS----SS------------EEEECCSSCCEEEEC-----------CEEEECCGGGCCHHHHHHHHH
T ss_pred -------hEEEeccC----CC------------ceEEEeCcccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHH
Confidence 55664321 10 135778899999999997 56 9999999999999999999999
Q ss_pred HHHhhhhcCCCCccccCCCceeeecCCCCCCcceeeeecCCceeEEEecceeEEeEEecC-----ceEEEEEEEEeeecc
Q psy6394 941 RIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAE-----MRVVAKCILNVTWAA 1015 (1045)
Q Consensus 941 ~l~~~a~~g~l~~~d~~ggTftiSNlG~~g~~~~~~iin~pq~ail~vG~i~~~pv~~~~-----~~~~~~~~m~ltls~ 1015 (1045)
+|+++||+|+|+++||+||||||||+|++|++.|+|||||||+||||+|++.++||++++ +++++|++|+|||||
T Consensus 119 ~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~ 198 (1113)
T 2xt6_A 119 DIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY 198 (1113)
T ss_dssp HHHHHHTTTCCCGGGTSCCSEEEECC------------CTTCSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEE
T ss_pred HHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCCceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998651 478999999999999
Q ss_pred cccccChHHHHHHHHHHHHhhcCcchh
Q psy6394 1016 DHRVVDGATVARAATLWKSLVENPALL 1042 (1045)
Q Consensus 1016 DHRviDG~~aa~fl~~~k~~le~P~~l 1042 (1045)
|||||||++||+||+.|+++||+|..|
T Consensus 199 DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 199 DHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp ETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999999999999999999843
No 22
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.95 E-value=4.4e-28 Score=257.89 Aligned_cols=127 Identities=12% Similarity=0.107 Sum_probs=113.6
Q ss_pred cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCc-cccCCCceeeecCCCCCCcceee
Q psy6394 900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQP 976 (1045)
Q Consensus 900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~-~d~~ggTftiSNlG~~g~~~~~~ 976 (1045)
+|+++..+|+|+|| ++++||++||++. ..+++.+|++++++++++||+| +|.+ +|+ ||||||||+|++| |++
T Consensus 81 ~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~---ft~ 155 (219)
T 1q23_A 81 ELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVS---FTS 155 (219)
T ss_dssp EEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCC---CSE
T ss_pred EEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCcccc---ccc
Confidence 45788899999999 9999999999997 5689999999999999999998 6976 899 9999999999975 566
Q ss_pred eecCCc------eeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcCcc
Q psy6394 977 IIVPRQ------VCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENPA 1040 (1045)
Q Consensus 977 iin~pq------~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~P~ 1040 (1045)
|+|+|+ ++||++|++.++ ++ |.+|+||||||||+|||++||+||+.|+++||+|.
T Consensus 156 i~~~~~~~~~~~~pIi~~G~~~~~----~~-----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~ 216 (219)
T 1q23_A 156 FDLNVANMDNFFAPVFTMGKYYTQ----GD-----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216 (219)
T ss_dssp EEEEESCCTTCCSCEEEECCCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCCCccceeEEEecccEEEE----CC-----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence 666665 699999999875 32 68999999999999999999999999999999863
No 23
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.95 E-value=7.1e-29 Score=264.60 Aligned_cols=167 Identities=25% Similarity=0.361 Sum_probs=38.6
Q ss_pred eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe-ecCCCeEEEEE
Q psy6394 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV-ALVGKPLLDIE 264 (1045)
Q Consensus 186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~-v~vG~~l~~i~ 264 (1045)
|.++|+||+||++|++|+|++|+ |++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |.+|++|++|+
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~--vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEe--cCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 45689999999999999999999 9999999999999999999999999999999999999999997 99999999997
Q ss_pred ecCccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccccccccCcccccccccc
Q psy6394 265 VEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKW 344 (1045)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1045)
.++++....... ...+. ..+. ...+.+. ... .+....+. . . .......
T Consensus 80 ~~~~~~~~~~~~----~~~~~----~~~~-~~~~~~~----~~~---~~~~~~~~--~---~-----------~~~~~~~ 127 (229)
T 1zy8_K 80 EEGEDWKHVEIP----KDVGP----PPPV-SKPSEPR----PSP---EPQISIPV--K---K-----------EHIPGTL 127 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccccccccc----ccccc----cccc-ccCCCcc----ccc---ccccCCCc--c---c-----------ccccccc
Confidence 544321100000 00000 0000 0000000 000 00000000 0 0 0001123
Q ss_pred ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386 (1045)
Q Consensus 345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~ 386 (1045)
+++++|+|||||+|+||||+.|+|||++|||+|+||++|+..
T Consensus 128 ~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~DV~~~~~~ 169 (229)
T 1zy8_K 128 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 169 (229)
T ss_dssp --CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHHHHHHHHH
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCceehHHHHHHHhh
Confidence 578999999999999999999999999999999999999863
No 24
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.94 E-value=8.5e-27 Score=247.12 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=113.7
Q ss_pred cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhcC-CCCc-cccCCCceeeecCCCCCCcceee
Q psy6394 900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEG-KVLP-RDIQGGTISMSNVGNVGGTLVQP 976 (1045)
Q Consensus 900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~g-~l~~-~d~~ggTftiSNlG~~g~~~~~~ 976 (1045)
+|+++..+|+|+|| ++++||++||+++ +.+++.+|++++++++++||+| +|.+ +|++||||||||+||++.+.|..
T Consensus 76 ~i~~~~~v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~ 154 (213)
T 3cla_A 76 ELIVWDSVDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNL 154 (213)
T ss_dssp EEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCC
T ss_pred EEEEEeccceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccc
Confidence 45788899999999 9999999999987 5699999999999999999996 9988 89999999999999987665543
Q ss_pred eecCC---ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhhcC
Q psy6394 977 IIVPR---QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLVEN 1038 (1045)
Q Consensus 977 iin~p---q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~le~ 1038 (1045)
.++++ ..+|+++|++.++ ++ |++|+||||||||+|||++||+||+.|+++||+
T Consensus 155 ~~~~g~~~~~PIi~~G~~~~~----~~-----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 155 NVANFTDYFAPIITMAKYQQE----GD-----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp CCSCCTTCCSCEEEEECCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCCCCcccccEEEeeEEEEE----CC-----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 33333 2589999999875 33 689999999999999999999999999999998
No 25
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=7.2e-25 Score=232.57 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=111.8
Q ss_pred cccccCCcceEEEE-ecCCceeeeeecccCCCCHHHHHHHHHHHHhhhhc-CCCCcc------ccCCCceeeecCCCCCC
Q psy6394 900 NILVNPDHNISIAI-DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHE-GKVLPR------DIQGGTISMSNVGNVGG 971 (1045)
Q Consensus 900 ~ile~p~v~Igiav-~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~a~~-g~l~~~------d~~ggTftiSNlG~~g~ 971 (1045)
+|+++..+|+|+|| ++++||++||+.. ..+++.+|++++++++++||+ |+|.++ |++||||||||+|+++.
T Consensus 79 ~i~~~~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~f 157 (217)
T 2i9d_A 79 RVVLYDTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYF 157 (217)
T ss_dssp CEEEESCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCC
T ss_pred EEEEecccCeEEEEEecCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCcccc
Confidence 45788899999999 9999999999874 568999999999999999999 599995 99999999999999886
Q ss_pred cceeeeecCC---ceeEEEecceeEEeEEecCceEEEEEEEEeeecccccccChHHHHHHHHHHHHhh
Q psy6394 972 TLVQPIIVPR---QVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAATLWKSLV 1036 (1045)
Q Consensus 972 ~~~~~iin~p---q~ail~vG~i~~~pv~~~~~~~~~~~~m~ltls~DHRviDG~~aa~fl~~~k~~l 1036 (1045)
+.++..++++ ..+|+++|++.++ ++ |.+|+||||||||+|||++||+||+.|+++|
T Consensus 158 t~i~~~~~~g~~~~~PIi~~Gk~~~~----~~-----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 158 TSITGTQEKRSGNNYPLLNAGKAIIR----EG-----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp SEECCCBCSTTCCSSCEEEECCCEEE----TT-----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred ceeecCCCCCccceEEEEecceEEEE----CC-----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 6665545544 2589999999875 32 6899999999999999999999999999986
No 26
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.91 E-value=4.9e-26 Score=242.75 Aligned_cols=147 Identities=23% Similarity=0.302 Sum_probs=38.2
Q ss_pred eeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCE-EecCCceEEEe
Q psy6394 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV-ALVGKPLLDIE 524 (1045)
Q Consensus 446 ~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~-v~vg~~l~~i~ 524 (1045)
+.++|+||+||++|++|+|++|+ |++||.|++||+||+|||||+.++|+||++|+|.++++++|+. |.+|++|++|+
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~--vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEe--cCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 35689999999999999999999 9999999999999999999999999999999999999999997 99999999997
Q ss_pred ecCccccc---c---cccc---ccccC--CC--C-CCC------CCCCCCCCCccccccCCCCCCCcCccccCCCCCccc
Q psy6394 525 VEDEGVAA---E---EADS---LDRKA--AP--G-VSE------VNTPDTSDQPNETLHKDPNKIDTKELRGTGKQGRVL 584 (1045)
Q Consensus 525 ~~~~~~~~---~---~~~~---~~~~~--~~--~-~~~------~~~~~~~asP~vr~la~e~gidls~v~gTG~~GrI~ 584 (1045)
.+++.... . .... .+..+ .+ . ... .....++++|++||||+|+||||+.|+|||++|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRIt 159 (229)
T 1zy8_K 80 EEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFT 159 (229)
T ss_dssp --------------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBC
T ss_pred ccCccccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCcee
Confidence 54322110 0 0000 00000 00 0 000 011246789999999999999999999999999999
Q ss_pred hHhHHhhhCC
Q psy6394 585 KEDIITYMNS 594 (1045)
Q Consensus 585 k~DV~~~~~~ 594 (1045)
|+||++|++.
T Consensus 160 k~DV~~~~~~ 169 (229)
T 1zy8_K 160 KEDALKLVQL 169 (229)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHhh
Confidence 9999999853
No 27
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.70 E-value=8.2e-17 Score=156.34 Aligned_cols=91 Identities=21% Similarity=0.348 Sum_probs=78.8
Q ss_pred cccccccccceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-ee
Q psy6394 176 HHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VA 254 (1045)
Q Consensus 176 r~~~~s~~~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v 254 (1045)
|.+-......+.++|+||++|++|.+|+|++|+ |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|
T Consensus 16 ~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~--V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V 93 (128)
T 1y8o_B 16 NLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDV 93 (128)
T ss_dssp -------CCCSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSE
T ss_pred cccCccccCCcceeEEcCCCCCCcccEEEEEEe--cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeee
Confidence 333333445567899999999999999999999 999999999999999999999999999999999999999998 89
Q ss_pred cCCCeEEEEEecCc
Q psy6394 255 LVGKPLLDIEVEDE 268 (1045)
Q Consensus 255 ~vG~~l~~i~~~~~ 268 (1045)
.+|++|++|+..++
T Consensus 94 ~~G~~L~~i~~~~~ 107 (128)
T 1y8o_B 94 PLGTPLCIIVEKEA 107 (128)
T ss_dssp ETTCEEEEEESSGG
T ss_pred cCCCEEEEEecCcc
Confidence 99999999985443
No 28
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=151.83 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=78.1
Q ss_pred cceeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEE
Q psy6394 184 RHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLD 262 (1045)
Q Consensus 184 ~~~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~ 262 (1045)
+.|.++|+||++|++|.+|+|++|+ |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++
T Consensus 4 ~p~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~ 81 (108)
T 2dne_A 4 GSSGQKVPLPSLSPTMQAGTIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICI 81 (108)
T ss_dssp CCCCEEEECCCCSSSCCEEEEEECS--SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEE
T ss_pred CccceEEecCCCCCCcccEEEEEEE--cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEE
Confidence 4456899999999999999999999 999999999999999999999999999999999999999999 8999999999
Q ss_pred EEecCc
Q psy6394 263 IEVEDE 268 (1045)
Q Consensus 263 i~~~~~ 268 (1045)
|...++
T Consensus 82 i~~~~~ 87 (108)
T 2dne_A 82 TVGKPE 87 (108)
T ss_dssp EESCHH
T ss_pred EecCcc
Confidence 985543
No 29
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.66 E-value=4.2e-16 Score=141.86 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=75.6
Q ss_pred eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC-eecCCCeEEEEE
Q psy6394 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIE 264 (1045)
Q Consensus 186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~-~v~vG~~l~~i~ 264 (1045)
+.++|+||++|+++.+|+|.+|+ |++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|.
T Consensus 4 ~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 4 PHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CEEEEECCCSSTTCCEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred cceEEeCCCCCCCCCcEEEEEEE--cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 35789999999999999999999 999999999999999999999999999999999999999999 899999999998
Q ss_pred ec
Q psy6394 265 VE 266 (1045)
Q Consensus 265 ~~ 266 (1045)
.+
T Consensus 82 ~~ 83 (87)
T 3crk_C 82 EK 83 (87)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 30
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=146.15 Aligned_cols=80 Identities=29% Similarity=0.425 Sum_probs=76.3
Q ss_pred eeEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee-cCCCeEEEEE
Q psy6394 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-LVGKPLLDIE 264 (1045)
Q Consensus 186 ~~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v-~vG~~l~~i~ 264 (1045)
+.++|+||++|++|.+|+|.+|+ |++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| .+|++|+.|.
T Consensus 6 ~~~~i~~P~lg~~~~~G~i~~~~--v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 6 SGIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 83 (98)
T ss_dssp CCEEEECCCCSTTCSEECEEEES--SCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEE
T ss_pred ccEEEECCCCCCCCccEEEEEEE--cCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEe
Confidence 45689999999999999999999 99999999999999999999999999999999999999999998 9999999998
Q ss_pred ecC
Q psy6394 265 VED 267 (1045)
Q Consensus 265 ~~~ 267 (1045)
..+
T Consensus 84 ~~~ 86 (98)
T 2dnc_A 84 EEG 86 (98)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
No 31
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.63 E-value=7.8e-16 Score=141.87 Aligned_cols=77 Identities=65% Similarity=1.134 Sum_probs=74.9
Q ss_pred eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.++|+||++|+++.+|+|.+|+ |++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|+.
T Consensus 4 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred ceEEEcCCCCCCCCCEEEEEEE--cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 5689999999999999999999 9999999999999999999999999999999999999999999999999999974
No 32
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.61 E-value=2.5e-15 Score=145.92 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=78.3
Q ss_pred cceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEE
Q psy6394 444 RHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLD 522 (1045)
Q Consensus 444 ~~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~ 522 (1045)
.++.++++||++|+++.+|+|++|+ |++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++
T Consensus 24 ~p~~~~i~~P~lG~~~~~G~V~~~~--V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~ 101 (128)
T 1y8o_B 24 YPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCI 101 (128)
T ss_dssp CCSEEEEECCCSSTTCSEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEE
T ss_pred CCcceeEEcCCCCCCcccEEEEEEe--cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEE
Confidence 4457899999999999999999999 999999999999999999999999999999999999999998 8999999999
Q ss_pred EeecCc
Q psy6394 523 IEVEDE 528 (1045)
Q Consensus 523 i~~~~~ 528 (1045)
|+..++
T Consensus 102 i~~~~~ 107 (128)
T 1y8o_B 102 IVEKEA 107 (128)
T ss_dssp EESSGG
T ss_pred EecCcc
Confidence 986543
No 33
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=139.10 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=77.5
Q ss_pred ceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEE-ecCCceEEE
Q psy6394 445 HKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA-LVGKPLLDI 523 (1045)
Q Consensus 445 ~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v-~vg~~l~~i 523 (1045)
.+.++++||++|+++.+|+|.+|+ |++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+ .+|++|++|
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~--v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i 82 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI 82 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEES--SCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEE--cCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEE
Confidence 356789999999999999999999 99999999999999999999999999999999999999999998 999999999
Q ss_pred eecCc
Q psy6394 524 EVEDE 528 (1045)
Q Consensus 524 ~~~~~ 528 (1045)
...++
T Consensus 83 ~~~~~ 87 (98)
T 2dnc_A 83 VEEGE 87 (98)
T ss_dssp ECTTS
T ss_pred ecCCC
Confidence 86543
No 34
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.59 E-value=6.1e-15 Score=134.18 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=75.8
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEEee
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDIEV 525 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i~~ 525 (1045)
.++++||++|+++.+|+|.+|+ |++||.|++||.|+++|+||+.++|+||++|+|.++++++|+ .|.+|++|++|..
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEEC--SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred ceEEeCCCCCCCCCcEEEEEEE--cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 5789999999999999999999 999999999999999999999999999999999999999999 8999999999986
Q ss_pred cC
Q psy6394 526 ED 527 (1045)
Q Consensus 526 ~~ 527 (1045)
.+
T Consensus 83 ~~ 84 (87)
T 3crk_C 83 KE 84 (87)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 35
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=140.96 Aligned_cols=82 Identities=27% Similarity=0.344 Sum_probs=77.5
Q ss_pred ceeEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCC-EEecCCceEEE
Q psy6394 445 HKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD-VALVGKPLLDI 523 (1045)
Q Consensus 445 ~~~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~-~v~vg~~l~~i 523 (1045)
++.++++||++|+++.+|+|.+|+ |++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|
T Consensus 5 p~~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i 82 (108)
T 2dne_A 5 SSGQKVPLPSLSPTMQAGTIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT 82 (108)
T ss_dssp CCCEEEECCCCSSSCCEEEEEECS--SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred ccceEEecCCCCCCcccEEEEEEE--cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence 356889999999999999999999 999999999999999999999999999999999999999999 89999999999
Q ss_pred eecCc
Q psy6394 524 EVEDE 528 (1045)
Q Consensus 524 ~~~~~ 528 (1045)
...++
T Consensus 83 ~~~~~ 87 (108)
T 2dne_A 83 VGKPE 87 (108)
T ss_dssp ESCHH
T ss_pred ecCcc
Confidence 86543
No 36
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.57 E-value=5.6e-15 Score=131.82 Aligned_cols=75 Identities=21% Similarity=0.455 Sum_probs=73.2
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
++++||++|+++.+|+|.+|+ |++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLT 76 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEEC
T ss_pred cEEECCCCCCCCCCEEEEEEE--cCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 479999999999999999999 999999999999999999999999999999999999999999999999999986
No 37
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.55 E-value=1e-14 Score=134.44 Aligned_cols=78 Identities=64% Similarity=1.125 Sum_probs=75.4
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.++++||++|+++.+|+|.+|+ |++||.|++||+|++||+||+.++|+||++|+|.++++++|+.+.+|++|+.|+..
T Consensus 4 ~~~i~~P~lg~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEEC--CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred ceEEEcCCCCCCCCCEEEEEEE--cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 5789999999999999999999 99999999999999999999999999999999999999999999999999999754
No 38
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.52 E-value=2.4e-14 Score=127.88 Aligned_cols=76 Identities=29% Similarity=0.461 Sum_probs=72.7
Q ss_pred eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
.++|+||++|++ +|+|.+|+ +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|..+
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~--v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CeEEECCCCCCC--CEEEEEEE--cCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 468999999998 89999999 99999999999999999999999999999999999999999999999999999743
No 39
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.52 E-value=2.2e-14 Score=127.21 Aligned_cols=75 Identities=43% Similarity=0.720 Sum_probs=73.2
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
++++||++|+++.+|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECS--CCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEE--eCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999 999999999999999999999999999999999999999999999999999985
No 40
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.51 E-value=1.1e-15 Score=136.70 Aligned_cols=75 Identities=19% Similarity=0.384 Sum_probs=72.9
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.+++||++|+++.+|+|.+|+ |++||.|++||+||+||+||+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~ 77 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCC
T ss_pred cEEEcCCCCCCCccEEEEEEE--CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 479999999999999999999 999999999999999999999999999999999999999999999999999885
No 41
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.50 E-value=4.7e-14 Score=125.77 Aligned_cols=76 Identities=20% Similarity=0.430 Sum_probs=73.6
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||++|+++.+|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCS--SCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEE--cCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 578999999999999999999 9999999999999999999999999999999999999999999999999999864
No 42
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.45 E-value=2.6e-13 Score=120.93 Aligned_cols=73 Identities=27% Similarity=0.337 Sum_probs=70.0
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.+++||++|++ + +|.+|+ |++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~--v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEECCCCSSE--E-EEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred cEEECCCCCCC--C-EEEEEe--cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 36899999996 7 999999 9999999999999999999999999999999999999999999999999999974
No 43
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.45 E-value=2.4e-13 Score=121.34 Aligned_cols=76 Identities=30% Similarity=0.474 Sum_probs=72.8
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.++++||++|++ +|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~--v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECC--CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CeEEECCCCCCC--CEEEEEEE--cCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 468999999998 99999999 99999999999999999999999999999999999999999999999999999754
No 44
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.44 E-value=2.3e-13 Score=120.60 Aligned_cols=75 Identities=41% Similarity=0.709 Sum_probs=73.0
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
+++++|++|+++.+|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECS--CCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEE--eCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 578999999999999999999 999999999999999999999999999999999999999999999999999885
No 45
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.42 E-value=1e-14 Score=130.48 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=73.1
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||++|+++.+|+|.+|+ +++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCC--CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEE--CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 468899999999999999999 9999999999999999999999999999999999999999999999999998853
No 46
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.40 E-value=1.1e-13 Score=123.90 Aligned_cols=76 Identities=30% Similarity=0.460 Sum_probs=72.2
Q ss_pred eEEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 187 ~~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.++|+||++| ++..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEE--cCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 3578999999 68899999999 9999999999999999999999999999999999999999999999999999963
No 47
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.37 E-value=1.6e-12 Score=115.82 Aligned_cols=74 Identities=27% Similarity=0.322 Sum_probs=70.4
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
++++||++|++ + +|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~--v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSSE--E-EEEEEC--CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred cEEECCCCCCC--C-EEEEEe--cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 47899999996 7 999999 99999999999999999999999999999999999999999999999999999754
No 48
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.30 E-value=1.1e-12 Score=117.35 Aligned_cols=76 Identities=29% Similarity=0.450 Sum_probs=72.4
Q ss_pred eEEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 447 ~~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
.++++||++| ++..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.+..|++|+.|..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEEC--CCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEE--cCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 3578999999 68999999999 9999999999999999999999999999999999999999999999999999964
No 49
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.29 E-value=3.5e-13 Score=121.97 Aligned_cols=71 Identities=28% Similarity=0.440 Sum_probs=67.1
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
++|++|.+ |+|.+|+ +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 3 ~~i~~p~~------G~v~~~~--v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SCCCCCSC------CCCCSCC--CSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEECCCe------EEEEEEE--cCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 46888988 8899999 99999999999999999999999999999999999999999999999999999854
No 50
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.17 E-value=3.9e-12 Score=115.07 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=67.4
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
++|++|.+ |+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~--v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCC--CSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEE--cCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 35778887 7899999 999999999999999999999999999999999999999999999999999998654
No 51
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.15 E-value=1e-11 Score=114.55 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=28.8
Q ss_pred ccccccceeEEEEccCCCCCC----ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee
Q psy6394 179 HTSCIRHKLIQFKLADIGEGI----REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA 254 (1045)
Q Consensus 179 ~~s~~~~~~~~~~~P~lg~~~----~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v 254 (1045)
|++-......+|.+|+..+.. ..|+|.+|+ +++||.|++||+|++||++|+..+|.||++|+|.++.+++|+.|
T Consensus 7 ~~~~~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V 84 (94)
T 2jku_A 7 HSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVS--VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTV 84 (94)
T ss_dssp -----------------CCCCCCCSSSCEEEEEC--CCTTCCCCTTCCCEEEEC--------------------------
T ss_pred ccccccccCEEEEcCCCCceEEECCCCEEEEEEE--CCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEE
Confidence 556666677789999998764 489999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEE
Q psy6394 255 LVGKPLLDIE 264 (1045)
Q Consensus 255 ~vG~~l~~i~ 264 (1045)
..|++|+.|+
T Consensus 85 ~~G~~L~~ie 94 (94)
T 2jku_A 85 GEGDLLVELE 94 (94)
T ss_dssp ----------
T ss_pred CCCCEEEEEC
Confidence 9999998874
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.12 E-value=1.5e-10 Score=100.90 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=60.9
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
..|+|.+|+ +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|.
T Consensus 6 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~ 68 (72)
T 1z6h_A 6 MAGNLWKVH--VKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELS 68 (72)
T ss_dssp SSEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEG
T ss_pred ccEEEEEEE--cCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEe
Confidence 369999999 999999999999999999999999999999999999999999999999999985
No 53
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.12 E-value=7.3e-11 Score=106.48 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=60.5
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.+|+|.+|+ +++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|..
T Consensus 12 ~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 12 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp SSCCEEEES--SCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred CCEEEEEEE--CCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 468999999 9999999999999999999999999999999999999 99999999999999973
No 54
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.5e-10 Score=105.42 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=60.4
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.|..|++|+.|..
T Consensus 24 ~~G~v~~~~--v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 24 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp SCEEEEEES--SCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred CCEEEEEEE--cCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 469999999 9999999999999999999999999999999999 99999999999999999963
No 55
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.04 E-value=1.2e-10 Score=90.57 Aligned_cols=39 Identities=36% Similarity=0.652 Sum_probs=37.2
Q ss_pred ccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385 (1045)
Q Consensus 347 ~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~ 385 (1045)
+++|+||+||+|+|||++.|+|||++|||+|+||++|+.
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 579999999999999999999999999999999999975
No 56
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.02 E-value=1e-10 Score=97.34 Aligned_cols=44 Identities=45% Similarity=0.763 Sum_probs=39.2
Q ss_pred ccccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394 343 KWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386 (1045)
Q Consensus 343 ~~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~ 386 (1045)
+.++.++|+||+||+|+|||++.|+|||++|||+|+||++|++.
T Consensus 5 ~~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 5 GRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp ---CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 34678999999999999999999999999999999999999853
No 57
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.02 E-value=3.4e-10 Score=102.11 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=61.4
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..|+|.+|+ +++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+.|..|++|+.|....
T Consensus 12 ~~G~v~~~~--v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEES--SCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEE--CCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 468899999 9999999999999999999999999999999999999 9999999999999997543
No 58
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.01 E-value=8.5e-10 Score=96.01 Aligned_cols=64 Identities=28% Similarity=0.326 Sum_probs=61.3
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
..|+|.+|+ +++||.|++||+|+++|++|...+|.||++|+|.++++++|+.|..|++|+.|..
T Consensus 6 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVH--VKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred ccEEEEEEE--cCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 368999999 9999999999999999999999999999999999999999999999999999864
No 59
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.00 E-value=1e-09 Score=95.82 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=60.3
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
..|+|.+|+ +++||.|++||+|++++++|...+|.||.+|+|.++.+++|+.+..|++|+.|+
T Consensus 12 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVL--VRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEE--cCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 469999999 999999999999999999999999999999999999999999999999999873
No 60
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.00 E-value=1.9e-10 Score=88.90 Aligned_cols=38 Identities=39% Similarity=0.696 Sum_probs=36.3
Q ss_pred cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385 (1045)
Q Consensus 348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~ 385 (1045)
++|+||++|+|+|||++.|+|||++|||+|+||++|++
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 39 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAAG 39 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHHC
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHhc
Confidence 68999999999999999999999999999999999874
No 61
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=107.79 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=28.8
Q ss_pred cceeEEEEecCCCCCc----ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCc
Q psy6394 444 RHKLIQFNLADIGEGI----REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKP 519 (1045)
Q Consensus 444 ~~~~~~i~~P~lge~~----~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~ 519 (1045)
.....++.+|..++.. ..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++
T Consensus 12 ~~~~~~v~~~~~~~~~v~a~~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~ 89 (94)
T 2jku_A 12 DLGTENLYFQSMTSSVLRSPMPGVVVAVS--VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDL 89 (94)
T ss_dssp ------------CCCCCCCSSSCEEEEEC--CCTTCCCCTTCCCEEEEC-------------------------------
T ss_pred cccCEEEEcCCCCceEEECCCCEEEEEEE--CCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCE
Confidence 4456778899887764 489999999 9999999999999999999999999999999999999999999999999
Q ss_pred eEEEe
Q psy6394 520 LLDIE 524 (1045)
Q Consensus 520 l~~i~ 524 (1045)
|+.|+
T Consensus 90 L~~ie 94 (94)
T 2jku_A 90 LVELE 94 (94)
T ss_dssp -----
T ss_pred EEEEC
Confidence 98873
No 62
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=98.99 E-value=1.8e-10 Score=89.01 Aligned_cols=38 Identities=34% Similarity=0.698 Sum_probs=35.1
Q ss_pred cChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385 (1045)
Q Consensus 348 atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~ 385 (1045)
++|+||+||+++|||++.|+|||++|||+|+||++|+.
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 39 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC--
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 68999999999999999999999999999999999864
No 63
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.98 E-value=7.9e-10 Score=98.47 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=54.8
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
+|+ +++||.|++||+|++||++|+.++|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 24 ~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred ccc--cCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 469 999999999999999999999999999999999999999999999999999873
No 64
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=101.62 Aligned_cols=65 Identities=32% Similarity=0.384 Sum_probs=62.0
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
..|+|.+|+ +++||.|++||+|++||++|+..+|.||++|+|.++++++|+.|..|++|+.|...
T Consensus 21 ~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 21 MTGTIEKVF--VKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp SSEEEEEEC--CCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred CCEEEEEEE--CCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECC
Confidence 369999999 99999999999999999999999999999999999999999999999999999743
No 65
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.97 E-value=1.2e-09 Score=96.40 Aligned_cols=63 Identities=25% Similarity=0.273 Sum_probs=60.3
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
..|.|.+|+ +++||.|++||+|++++++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~~G~v~~~~--v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEE--cCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 468999999 999999999999999999999999999999999999999999999999999873
No 66
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.95 E-value=3.6e-10 Score=91.30 Aligned_cols=42 Identities=43% Similarity=0.787 Sum_probs=39.3
Q ss_pred ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386 (1045)
Q Consensus 345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~ 386 (1045)
++.++|+||+||+|+|||++.|+|||++|||+|+||++|+..
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~~ 47 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 47 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHCC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHhc
Confidence 467899999999999999999999999999999999999863
No 67
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.1e-09 Score=100.15 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=60.9
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|. +++++|+.+..|++|+.|...
T Consensus 24 ~~G~v~~~~--v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 24 SAGKLTQYT--VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD 87 (100)
T ss_dssp SCEEEEEES--SCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred CCEEEEEEE--cCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence 468999999 9999999999999999999999999999999999 999999999999999999643
No 68
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.93 E-value=3.2e-10 Score=92.28 Aligned_cols=42 Identities=26% Similarity=0.572 Sum_probs=39.3
Q ss_pred ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386 (1045)
Q Consensus 345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~ 386 (1045)
++.++|+||+||+|+|||++.|+|||++|||+|+||++|+++
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~~ 50 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 50 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSCC
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhcc
Confidence 457899999999999999999999999999999999999875
No 69
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.88 E-value=5.2e-09 Score=91.33 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=60.2
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
..|.|.+|+ +++||.|++||+|++++++|...+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus 12 ~~G~v~~~~--v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVL--VRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEEC--CCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEE--cCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 468999999 999999999999999999999999999999999999999999999999999873
No 70
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.87 E-value=2.9e-09 Score=94.82 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=54.9
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
+|+ +++||.|++||.|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|+
T Consensus 24 ~~~--v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAF--IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp CCS--CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred ccc--cCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 479 999999999999999999999999999999999999999999999999999874
No 71
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.85 E-value=5.4e-09 Score=92.15 Aligned_cols=63 Identities=25% Similarity=0.273 Sum_probs=60.2
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
..|.|.+|+ +++||.|++||+|++++++|...+|.||++|+|.++++++|+.+..|++|+.|+
T Consensus 15 ~~G~v~~~~--v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEEC--CCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEE--cCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 468899999 999999999999999999999999999999999999999999999999999874
No 72
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.84 E-value=3.6e-09 Score=130.13 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=60.2
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|++|+ |++||+|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 620 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVD--VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEEC--CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEE--eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 49999999 999999999999999999999999999999999999999999999999999884
No 73
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=93.83 Aligned_cols=43 Identities=49% Similarity=0.823 Sum_probs=39.9
Q ss_pred cccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhcC
Q psy6394 344 WKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386 (1045)
Q Consensus 344 ~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~~ 386 (1045)
.+++++|+||+||+|+||||+.|+|||++|||+|+||++|+..
T Consensus 14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999863
No 74
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.82 E-value=1.3e-09 Score=92.61 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=39.4
Q ss_pred cccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394 344 WKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385 (1045)
Q Consensus 344 ~~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~ 385 (1045)
.++.++|+||+||+++|||++.|+|||++|||+|+||++|+.
T Consensus 8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~ 49 (64)
T 2f60_K 8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ 49 (64)
T ss_dssp HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHh
Confidence 356789999999999999999999999999999999999986
No 75
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.81 E-value=9.4e-09 Score=95.52 Aligned_cols=66 Identities=32% Similarity=0.392 Sum_probs=62.5
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeecC
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~~ 527 (1045)
..|+|.+|+ +++||.|++||+|+++|++|+..+|.||++|+|.++++++|+.|..|++|+.|....
T Consensus 21 ~~G~v~~~~--v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 21 MTGTIEKVF--VKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE 86 (99)
T ss_dssp SSEEEEEEC--CCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred CCEEEEEEE--CCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence 368999999 999999999999999999999999999999999999999999999999999997543
No 76
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.77 E-value=8e-09 Score=133.76 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=59.2
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
|+|.+|+ |++||+|++||+||+||+||++++|+||.+|+|.+|++++|+.|.+|++|+.|
T Consensus 1176 G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPV--AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEES--SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred EEEEEEE--cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 9999999 99999999999999999999999999999999999999999999999999987
No 77
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.77 E-value=3.6e-09 Score=89.52 Aligned_cols=41 Identities=34% Similarity=0.626 Sum_probs=39.0
Q ss_pred ccccChHHHHHHHHcCCCcccccccCCCcceehhhHHhhhc
Q psy6394 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385 (1045)
Q Consensus 345 ~~~atP~vRrlA~e~gidls~v~gTG~~Gri~k~DVl~~~~ 385 (1045)
+++++|++|+||+++||||+.|.|||++|||+|+||++|+.
T Consensus 4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~ 44 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAE 44 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHh
Confidence 46789999999999999999999999999999999999986
No 78
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.75 E-value=1e-08 Score=132.42 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=60.8
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.|+|++|+ |++||.|++||+||+||+||++++|+||.+|+|.+|++++|+.|.+|++|+.|+.
T Consensus 1085 ~G~v~~~~--v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1085 PGSVTEVK--VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp SEEEEEEC--CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred eEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 49999999 9999999999999999999999999999999999999999999999999999974
No 79
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.73 E-value=1.2e-09 Score=134.17 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=0.0
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.|+|++|+ |++||+|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 610 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 610 NGSIVRVL--VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------------------------------------
T ss_pred CEEEEEEE--eCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 49999999 9999999999999999999999999999999999999999999999999999974
No 80
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.69 E-value=2e-08 Score=123.52 Aligned_cols=62 Identities=23% Similarity=0.344 Sum_probs=60.2
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
-|+|++|+ |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 620 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVD--VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEEC--CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEE--eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 48999999 999999999999999999999999999999999999999999999999999884
No 81
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=98.65 E-value=3.5e-09 Score=82.22 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=36.8
Q ss_pred CCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394 555 SDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN 593 (1045)
Q Consensus 555 ~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~ 593 (1045)
+++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 579999999999999999999999999999999999864
No 82
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.63 E-value=3.7e-08 Score=127.63 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
-|+|.+|+ |++||.|++||+|++||+||++++|+||.+|+|.+|++++||.|.+|++|+.|
T Consensus 1175 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPV--AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEES--SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEE--cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 38999999 99999999999999999999999999999999999999999999999999987
No 83
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=98.62 E-value=3.7e-09 Score=81.61 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=34.8
Q ss_pred CCccccccCCCCCCCcCccccCCCCCccchHhHHhhh
Q psy6394 556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYM 592 (1045)
Q Consensus 556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~ 592 (1045)
++|++|++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6899999999999999999999999999999999875
No 84
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=98.60 E-value=4.3e-09 Score=81.25 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=35.7
Q ss_pred CCccccccCCCCCCCcCccccCCCCCccchHhHHhhh
Q psy6394 556 DQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYM 592 (1045)
Q Consensus 556 asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~ 592 (1045)
++|++|++|+++|||++.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6899999999999999999999999999999999886
No 85
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=98.59 E-value=4.9e-09 Score=87.22 Aligned_cols=42 Identities=38% Similarity=0.595 Sum_probs=38.2
Q ss_pred CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394 552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN 593 (1045)
Q Consensus 552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~ 593 (1045)
..+.++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~ 47 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLE 47 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHh
Confidence 457889999999999999999999999999999999999864
No 86
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.59 E-value=1.3e-08 Score=82.77 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=38.4
Q ss_pred CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394 552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN 593 (1045)
Q Consensus 552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~ 593 (1045)
....++|++|++|+++|||++.|.|||++|||+++||++|+.
T Consensus 8 ~~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~~ 49 (51)
T 1bal_A 8 NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49 (51)
T ss_dssp SSCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTSC
T ss_pred CCCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHhc
Confidence 345789999999999999999999999999999999998754
No 87
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.58 E-value=5.9e-08 Score=125.31 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=60.8
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.|+|++|+ |++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~--v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVK--VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEEC--CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred eEEEEEEE--eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 58999999 99999999999999999999999999999999999999999999999999999743
No 88
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.57 E-value=7.3e-08 Score=94.27 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=60.9
Q ss_pred EEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE---eeCCCCeec---CCC-eEE
Q psy6394 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PLL 261 (1045)
Q Consensus 189 ~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i---~~~~g~~v~---vG~-~l~ 261 (1045)
.+..|.+|+ |+.+. .+++||.|++||+||+||+||+..+|.||.+|+|.++ +++.|+.|+ .|+ +|+
T Consensus 38 ~~a~~~lG~------i~~V~-lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~ 110 (136)
T 1zko_A 38 NHAQEQLGD------VVYVD-LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF 110 (136)
T ss_dssp HHHHHHHCS------EEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred hhhcccCCC------cEEEE-ecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence 456677765 23333 0489999999999999999999999999999999999 899999998 998 999
Q ss_pred EEEecC
Q psy6394 262 DIEVED 267 (1045)
Q Consensus 262 ~i~~~~ 267 (1045)
.|...+
T Consensus 111 ~i~~~~ 116 (136)
T 1zko_A 111 KMEISD 116 (136)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 998544
No 89
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.54 E-value=8.8e-09 Score=126.61 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=0.0
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
.|+|++|+ |++||.|++||+|++||+||++++|+||.+|+|.++++++||.|.+|++|+.|+.+
T Consensus 610 ~G~v~~~~--v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVL--VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ------------------------------------------------------------------
T ss_pred CEEEEEEE--eCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 48899999 99999999999999999999999999999999999999999999999999999753
No 90
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.50 E-value=1.5e-08 Score=81.83 Aligned_cols=41 Identities=34% Similarity=0.536 Sum_probs=38.3
Q ss_pred CCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394 553 DTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN 593 (1045)
Q Consensus 553 ~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~ 593 (1045)
...++|++|++|+++|||++.|.|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 35679999999999999999999999999999999999875
No 91
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.46 E-value=2.2e-07 Score=88.55 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=60.0
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCcee-----------------------------EEeCCCCeEEEEEeeCC
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKASV-----------------------------TITSRYKGTVRKVYYGE 250 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~-----------------------------~i~s~~~G~v~~i~~~~ 250 (1045)
..|.|.+|+ |++||.|++||+|+++++.++.. .|.||++|+|.++.+.+
T Consensus 8 ~~G~V~~v~--v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~ 85 (116)
T 2k32_A 8 VSGVIVNKL--FKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI 85 (116)
T ss_dssp SCEEEEEEC--SCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred CCEEEEEEE--CCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence 469999999 99999999999999999986664 99999999999999999
Q ss_pred CCeecCC-CeEEEEEec
Q psy6394 251 GDVALVG-KPLLDIEVE 266 (1045)
Q Consensus 251 g~~v~vG-~~l~~i~~~ 266 (1045)
|+.|..| ++|+.|...
T Consensus 86 G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 86 GDYVSASTTELVRVTNL 102 (116)
T ss_dssp TCEECTTTSCCEEEECS
T ss_pred CCEEcCCCcEEEEEECC
Confidence 9999999 999999743
No 92
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.44 E-value=5.7e-08 Score=119.00 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=61.7
Q ss_pred CCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEE
Q psy6394 195 IGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263 (1045)
Q Consensus 195 lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i 263 (1045)
+...| .|+|++|+ |++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 652 v~ap~-~G~V~~v~--V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 652 IGAPM-PGKVIDIK--VVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp EECSS-CEEEEEEC--SCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred EeCCC-CeEEEEEE--eCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 34444 59999999 99999999999999999999999999999999999999999999999999876
No 93
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.40 E-value=3.3e-08 Score=85.58 Aligned_cols=43 Identities=37% Similarity=0.588 Sum_probs=39.6
Q ss_pred CCCCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCC
Q psy6394 552 PDTSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNS 594 (1045)
Q Consensus 552 ~~~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~ 594 (1045)
..+.++|++|++|+++|||+..|.|||++|||+++||++|+..
T Consensus 14 ~~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 14 RKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp CSCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred CccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 3567899999999999999999999999999999999998764
No 94
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.35 E-value=2.3e-07 Score=120.16 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=53.7
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.|+|.+|+ |++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1103 ~G~v~~~~--v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVF--VSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEEC--CSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEE--cCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 49999999 999999999999999999999999999999999999999999999999999875
No 95
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.30 E-value=3.2e-08 Score=83.69 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=38.4
Q ss_pred CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhCC
Q psy6394 554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNS 594 (1045)
Q Consensus 554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~~ 594 (1045)
.+++|++|++|+++|||++.|.|||++|||+++||++|+..
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 56799999999999999999999999999999999999863
No 96
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.29 E-value=8.2e-07 Score=84.54 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=59.9
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccceee-----------------------------EEecCCCEEEEEEeeCC
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKASV-----------------------------TITSRYKGTVRKVYYGE 510 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~-----------------------------ei~ap~~G~v~~i~~~~ 510 (1045)
..|.|.+|+ +++||.|++||+|+++++.++.. .|.||++|+|.++.+++
T Consensus 8 ~~G~V~~v~--v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~ 85 (116)
T 2k32_A 8 VSGVIVNKL--FKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI 85 (116)
T ss_dssp SCEEEEEEC--SCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred CCEEEEEEE--CCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence 469999999 99999999999999999986654 89999999999999999
Q ss_pred CCEEecC-CceEEEeec
Q psy6394 511 GDVALVG-KPLLDIEVE 526 (1045)
Q Consensus 511 G~~v~vg-~~l~~i~~~ 526 (1045)
|+.|..| ++|+.|...
T Consensus 86 G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 86 GDYVSASTTELVRVTNL 102 (116)
T ss_dssp TCEECTTTSCCEEEECS
T ss_pred CCEEcCCCcEEEEEECC
Confidence 9999999 999999754
No 97
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.29 E-value=8.3e-07 Score=86.83 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=60.3
Q ss_pred EEEecCCCCCcceeEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEE---eeCCCCEEe---cCC-ce
Q psy6394 449 QFNLADIGEGIREVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKV---YYGEGDVAL---VGK-PL 520 (1045)
Q Consensus 449 ~i~~P~lge~~~eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i---~~~~G~~v~---vg~-~l 520 (1045)
.+..|.+|+ |+... + ++||.|++||+||+||++|+..+|.||.+|+|.++ ++++|+.|. .|+ .|
T Consensus 38 ~~a~~~lG~------i~~V~--lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL 109 (136)
T 1zko_A 38 NHAQEQLGD------VVYVD--LPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWL 109 (136)
T ss_dssp HHHHHHHCS------EEEEE--CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred hhhcccCCC------cEEEE--ecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEE
Confidence 344677764 44444 4 99999999999999999999999999999999999 788999998 887 99
Q ss_pred EEEeecC
Q psy6394 521 LDIEVED 527 (1045)
Q Consensus 521 ~~i~~~~ 527 (1045)
+.|....
T Consensus 110 ~~i~~~~ 116 (136)
T 1zko_A 110 FKMEISD 116 (136)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998653
No 98
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.26 E-value=9.4e-08 Score=81.25 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=37.4
Q ss_pred CCCCccccccCCCCCCCcCccccCCCCCccchHhHHhhhC
Q psy6394 554 TSDQPNETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMN 593 (1045)
Q Consensus 554 ~~asP~vr~la~e~gidls~v~gTG~~GrI~k~DV~~~~~ 593 (1045)
+.++|++|++|+++|||++.|+|||++|||+++||++|++
T Consensus 10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~ 49 (64)
T 2f60_K 10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ 49 (64)
T ss_dssp HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHh
Confidence 3579999999999999999999999999999999999874
No 99
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.23 E-value=3e-07 Score=112.66 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=59.4
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEE
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i 523 (1045)
.|+|++|+ |++||.|++||+|++||+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 657 ~G~V~~v~--V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIK--VVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp CEEEEEEC--SCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred CeEEEEEE--eCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 69999999 99999999999999999999999999999999999999999999999999876
No 100
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.17 E-value=2.4e-06 Score=82.85 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=58.4
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---eec---CCC-eE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VAL---VGK-PL 260 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v~---vG~-~l 260 (1045)
..+..|.+|+ +. .+. ..++||+|++||+||+||++|+..+|.||.+|+|.++....++ .++ .|+ .|
T Consensus 29 td~a~~~lG~-i~-----~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl 101 (128)
T 3a7l_A 29 TEHAQELLGD-MV-----FVD-LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI 101 (128)
T ss_dssp CHHHHHHHCS-EE-----EEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred ehHHhccCCc-eE-----EEE-ecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccE
Confidence 4566777776 33 333 1489999999999999999999999999999999999875554 465 777 99
Q ss_pred EEEEecC
Q psy6394 261 LDIEVED 267 (1045)
Q Consensus 261 ~~i~~~~ 267 (1045)
+.|...+
T Consensus 102 ~~i~~~~ 108 (128)
T 3a7l_A 102 FKIKASD 108 (128)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998654
No 101
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.15 E-value=1e-06 Score=114.15 Aligned_cols=62 Identities=24% Similarity=0.227 Sum_probs=53.7
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEe
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~ 524 (1045)
.|+|.+|+ |++||.|++||+|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1103 ~G~v~~~~--v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVF--VSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEEC--CSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEE--cCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 58999999 999999999999999999999999999999999999999999999999999874
No 102
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.14 E-value=1.5e-06 Score=84.48 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=58.0
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCC---eec---CCC-eE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD---VAL---VGK-PL 260 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~---~v~---vG~-~l 260 (1045)
..+..|.+|+ |+.+. ..++||+|++||+||+||+||+..+|.||.+|+|.++..+.++ .|+ .|+ .|
T Consensus 28 td~a~~~lG~------i~~v~-lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl 100 (131)
T 1hpc_A 28 TDHAQDHLGE------VVFVE-LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWM 100 (131)
T ss_dssp CHHHHHHHCS------EEEEE-CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred ehhhcccCCC------ceEEE-ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceE
Confidence 3456676665 44444 1489999999999999999999999999999999999866654 454 666 99
Q ss_pred EEEEecC
Q psy6394 261 LDIEVED 267 (1045)
Q Consensus 261 ~~i~~~~ 267 (1045)
+.|...+
T Consensus 101 ~~i~~~~ 107 (131)
T 1hpc_A 101 IKIKPTS 107 (131)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9998644
No 103
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.14 E-value=2.7e-06 Score=82.44 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=57.8
Q ss_pred EEEEccCCCCCCceEEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeC---CCCee---cCCC-eE
Q psy6394 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG---EGDVA---LVGK-PL 260 (1045)
Q Consensus 188 ~~~~~P~lg~~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~---~g~~v---~vG~-~l 260 (1045)
..+..|.+|+ +. ... ..++||+|++||+||+||++|+..+|.||.+|+|.++... ..+.+ +.|+ +|
T Consensus 28 t~~a~~~lG~-i~-----~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl 100 (128)
T 1onl_A 28 TDYAQDALGD-VV-----YVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWI 100 (128)
T ss_dssp CHHHHHHHCS-EE-----EEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred ehHHhhcCCC-ce-----EEE-ecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccE
Confidence 4456677765 33 333 1489999999999999999999999999999999999765 44445 6787 99
Q ss_pred EEEEecC
Q psy6394 261 LDIEVED 267 (1045)
Q Consensus 261 ~~i~~~~ 267 (1045)
+.|...+
T Consensus 101 ~~i~~~~ 107 (128)
T 1onl_A 101 FRLKPRD 107 (128)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998654
No 104
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.73 E-value=1.5e-05 Score=77.52 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=55.2
Q ss_pred EEEecCCCCCcceeEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC---CEEe---cCC-ce
Q psy6394 449 QFNLADIGEGIREVNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG---DVAL---VGK-PL 520 (1045)
Q Consensus 449 ~i~~P~lge~~~eg~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G---~~v~---vg~-~l 520 (1045)
++.+|.+|+ |+... + ++||.|++||+|++||++|+..+|.||.+|+|.+++.+.+ +.+. -|+ -|
T Consensus 29 d~a~~~lG~------i~~v~--lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl 100 (131)
T 1hpc_A 29 DHAQDHLGE------VVFVE--LPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWM 100 (131)
T ss_dssp HHHHHHHCS------EEEEE--CCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCC
T ss_pred hhhcccCCC------ceEEE--ecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceE
Confidence 344566664 55655 5 9999999999999999999999999999999999985444 3453 344 78
Q ss_pred EEEeecC
Q psy6394 521 LDIEVED 527 (1045)
Q Consensus 521 ~~i~~~~ 527 (1045)
+.|....
T Consensus 101 ~~i~~~~ 107 (131)
T 1hpc_A 101 IKIKPTS 107 (131)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 8887543
No 105
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.73 E-value=3.4e-05 Score=74.79 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=55.6
Q ss_pred EEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeC---CCCEE---ecCC-ceE
Q psy6394 449 QFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG---EGDVA---LVGK-PLL 521 (1045)
Q Consensus 449 ~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~---~G~~v---~vg~-~l~ 521 (1045)
.+..|.+|+ |+... -.++||.|++||.+|+||++|+..+|.||.+|+|.+++.+ ..+.+ +-|+ -|+
T Consensus 29 ~~a~~~lG~------i~~v~-lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (128)
T 1onl_A 29 DYAQDALGD------VVYVE-LPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF 101 (128)
T ss_dssp HHHHHHHCS------EEEEE-CBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred hHHhhcCCC------ceEEE-ecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence 344566664 44444 0399999999999999999999999999999999999754 44555 5565 788
Q ss_pred EEeecC
Q psy6394 522 DIEVED 527 (1045)
Q Consensus 522 ~i~~~~ 527 (1045)
.|....
T Consensus 102 ~i~~~~ 107 (128)
T 1onl_A 102 RLKPRD 107 (128)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 887543
No 106
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.70 E-value=3.3e-05 Score=74.87 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=55.6
Q ss_pred EEEEecCCCCCcceeEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCC---CEEe---cCC-ce
Q psy6394 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG---DVAL---VGK-PL 520 (1045)
Q Consensus 448 ~~i~~P~lge~~~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G---~~v~---vg~-~l 520 (1045)
.++..|.+|+ |+.... .++|+.|++||.+|+||++|+..+|.||.+|+|.+++.+.+ +.+. -|+ -|
T Consensus 29 td~a~~~lG~------i~~v~l-p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl 101 (128)
T 3a7l_A 29 TEHAQELLGD------MVFVDL-PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI 101 (128)
T ss_dssp CHHHHHHHCS------EEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCC
T ss_pred ehHHhccCCc------eEEEEe-cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccE
Confidence 3444677765 445440 39999999999999999999999999999999999986444 4454 454 78
Q ss_pred EEEeecC
Q psy6394 521 LDIEVED 527 (1045)
Q Consensus 521 ~~i~~~~ 527 (1045)
+.|....
T Consensus 102 ~~i~~~~ 108 (128)
T 3a7l_A 102 FKIKASD 108 (128)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 8887543
No 107
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.30 E-value=0.00035 Score=80.95 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=57.7
Q ss_pred ceEEEEEEeccC-CCCCeecCCCeEEEEEc------------------------------------------------CC
Q psy6394 200 REVNIKEWNGNV-TEGARINEFDVVCEVES------------------------------------------------DK 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v-~~Gd~V~~gd~l~~vet------------------------------------------------dK 230 (1045)
..|.|.+++ | ++||.|++||+|++|++ ..
T Consensus 128 ~~G~V~~v~--V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~ 205 (413)
T 3ne5_B 128 AAGFIDKVY--PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQ 205 (413)
T ss_dssp SCEEEEEEC--SCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCC
T ss_pred cCEEEEEEE--eCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 469999999 9 99999999999999995 22
Q ss_pred ceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 231 ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 231 a~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
....|.||++|+|.++.+.+|+.|..|++|+.|..
T Consensus 206 ~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 206 TRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp CEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred ccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 35689999999999999999999999999999973
No 108
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.21 E-value=0.00016 Score=78.82 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 230 (1045)
..|.|.+|+ |++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~ 106 (277)
T 2f1m_A 29 VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALAD 106 (277)
T ss_dssp SCEEEEEEC--SCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHH
T ss_pred ccEEEEEEE--cCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 359999999 99999999999999998741
Q ss_pred ----------------------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394 231 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV 265 (1045)
Q Consensus 231 ----------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~ 265 (1045)
....|.||++|+|..+.+.+|+.|..| ++|+.|..
T Consensus 107 ~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 107 AQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEec
Confidence 124899999999999999999999999 68999964
No 109
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.19 E-value=0.00043 Score=66.54 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=50.7
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCCC-eEEEEEec
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVGK-PLLDIEVE 266 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG~-~l~~i~~~ 266 (1045)
|.|+-+. .-++|++|++||+++.||++|+..+|.||.+|+|.++.....+. + +.|+ .|+.|...
T Consensus 32 Gdiv~ve-lp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~~~ 102 (125)
T 3klr_A 32 GDVVYCS-LPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFS 102 (125)
T ss_dssp CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEEES
T ss_pred CCeEEEE-eCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEEEC
Confidence 4555554 14789999999999999999999999999999999997766544 3 2554 78888754
No 110
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.15 E-value=0.00059 Score=77.15 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=57.7
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCCc------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDKA------------------------------------------------ 231 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa------------------------------------------------ 231 (1045)
..|.|.+++ |++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a 141 (359)
T 3lnn_A 64 LAGRIVSLN--KQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA 141 (359)
T ss_dssp SCEEEEECC--SCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHH
T ss_pred CCEEEEEEE--cCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 369999999 999999999999999987531
Q ss_pred ----------------------------eeEEeCCCCeEEEEEeeCCCCeecC-CCeEEEEEe
Q psy6394 232 ----------------------------SVTITSRYKGTVRKVYYGEGDVALV-GKPLLDIEV 265 (1045)
Q Consensus 232 ----------------------------~~~i~s~~~G~v~~i~~~~g~~v~v-G~~l~~i~~ 265 (1045)
...|.||++|+|.++.+.+|+.|.. |++|+.|..
T Consensus 142 ~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~ 204 (359)
T 3lnn_A 142 ASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVAD 204 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEEC
T ss_pred HHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEec
Confidence 3579999999999999999999999 999999974
No 111
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.11 E-value=0.00052 Score=77.02 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=56.2
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 230 (1045)
..|.|.+|+ |++||.|++||+|+++++..
T Consensus 38 ~~G~V~~v~--v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~ 115 (341)
T 3fpp_A 38 VSGQLKTLS--VAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115 (341)
T ss_dssp SCEEEEEEC--CCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHH
T ss_pred CCcEEEEEE--eCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence 459999999 99999999999999998741
Q ss_pred ------------------------------------ceeEEeCCCCeEEEEEeeCCCCeecCCCe---EEEEEe
Q psy6394 231 ------------------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP---LLDIEV 265 (1045)
Q Consensus 231 ------------------------------------a~~~i~s~~~G~v~~i~~~~g~~v~vG~~---l~~i~~ 265 (1045)
....|.||++|+|.++.+.+|+.|..|++ |+.|..
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 189 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence 11569999999999999999999999987 888863
No 112
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.01 E-value=0.00079 Score=65.92 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCee------cCC-CeEEEEEecC
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA------LVG-KPLLDIEVED 267 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v------~vG-~~l~~i~~~~ 267 (1045)
|.|+-+. .-++|++|++||+++.||++|+..+|.||.+|+|.++.-...+.- +.| ..|+.|+..+
T Consensus 54 GdIvfVe-lP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d 125 (143)
T 3mxu_A 54 GDLVFID-LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQD 125 (143)
T ss_dssp CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSC
T ss_pred CCeEEEE-cCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECC
Confidence 4454443 147899999999999999999999999999999999987665542 345 4788887543
No 113
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.00 E-value=0.0011 Score=76.60 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=58.1
Q ss_pred ceeEEEEeeecc-CCCCeeccCCeEeEEec------------------------------------------------cc
Q psy6394 460 REVNIKEWNGNV-TEGARINEFDVVCEVES------------------------------------------------DK 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v-~~Gd~V~~gd~l~~vet------------------------------------------------dK 490 (1045)
..|.|.+++ | ++||.|++||+|+++++ ..
T Consensus 128 ~~G~V~~v~--V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~ 205 (413)
T 3ne5_B 128 AAGFIDKVY--PLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQ 205 (413)
T ss_dssp SCEEEEEEC--SCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCC
T ss_pred cCEEEEEEE--eCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc
Confidence 469999999 9 99999999999999995 22
Q ss_pred eeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 491 ASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 491 a~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
....|.||++|+|.++.+.+|+.|..|++|+.|...
T Consensus 206 ~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 206 TRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp CEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred ccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 356899999999999999999999999999999743
No 114
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=96.97 E-value=0.00045 Score=75.25 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=57.3
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ |++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~ 106 (277)
T 2f1m_A 29 VSGIILKRN--FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALAD 106 (277)
T ss_dssp SCEEEEEEC--SCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHH
T ss_pred ccEEEEEEE--cCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 359999999 99999999999999998742
Q ss_pred ----------------------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394 491 ----------------------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE 526 (1045)
Q Consensus 491 ----------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~ 526 (1045)
....|.||++|+|..+.+.+|+.|..| ++|+.|...
T Consensus 107 ~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 107 AQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence 134899999999999999999999999 689999654
No 115
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.90 E-value=0.00086 Score=65.36 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=48.5
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEec
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVE 266 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~ 266 (1045)
|.|+-+. .-++|++|++||.++.||++|+..+|.||.+|+|.++.-...+. + +.| ..|+.|+..
T Consensus 49 Gdiv~Ve-lP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~~~ 119 (137)
T 3tzu_A 49 GDLVFVQ-LPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPT 119 (137)
T ss_dssp CSEEEEE-CCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEEEE
T ss_pred CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEEeh
Confidence 4454443 14799999999999999999999999999999999996543322 2 345 377777643
No 116
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=96.87 E-value=0.0015 Score=73.74 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccce------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDKA------------------------------------------------ 491 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa------------------------------------------------ 491 (1045)
..|.|.+++ +++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~--v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a 141 (359)
T 3lnn_A 64 LAGRIVSLN--KQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA 141 (359)
T ss_dssp SCEEEEECC--SCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHH
T ss_pred CCEEEEEEE--cCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 369999999 999999999999999997531
Q ss_pred ----------------------------eeEEecCCCEEEEEEeeCCCCEEec-CCceEEEeec
Q psy6394 492 ----------------------------SVTITSRYKGTVRKVYYGEGDVALV-GKPLLDIEVE 526 (1045)
Q Consensus 492 ----------------------------~~ei~ap~~G~v~~i~~~~G~~v~v-g~~l~~i~~~ 526 (1045)
...|.||++|+|.++.+.+|+.+.. |++|+.|...
T Consensus 142 ~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 142 ASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 3579999999999999999999999 9999999753
No 117
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=96.85 E-value=0.0013 Score=63.29 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=40.6
Q ss_pred eEEEEeeecc-CCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCC
Q psy6394 462 VNIKEWNGNV-TEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510 (1045)
Q Consensus 462 g~i~~w~~~v-~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~ 510 (1045)
|.|+-.- . ++|+.|++||.++.||++|+..+|.||.+|+|.+++-.-
T Consensus 32 Gdiv~ve--lp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l 79 (125)
T 3klr_A 32 GDVVYCS--LPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL 79 (125)
T ss_dssp CSEEEEE--CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEE--eCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence 4466554 3 799999999999999999999999999999999997543
No 118
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.80 E-value=0.0015 Score=73.21 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=56.3
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|+++++.-
T Consensus 38 ~~G~V~~v~--v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~ 115 (341)
T 3fpp_A 38 VSGQLKTLS--VAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQD 115 (341)
T ss_dssp SCEEEEEEC--CCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHH
T ss_pred CCcEEEEEE--eCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence 358999999 99999999999999998752
Q ss_pred ------------------------------------eeeEEecCCCEEEEEEeeCCCCEEecCCc---eEEEee
Q psy6394 491 ------------------------------------ASVTITSRYKGTVRKVYYGEGDVALVGKP---LLDIEV 525 (1045)
Q Consensus 491 ------------------------------------a~~ei~ap~~G~v~~i~~~~G~~v~vg~~---l~~i~~ 525 (1045)
....|.||++|+|.++.+.+|+.|..|++ |+.|..
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 189 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence 11569999999999999999999999987 888864
No 119
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.75 E-value=0.00062 Score=77.58 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred ceEEEEEEeccCCCCCeecCCCeEEEEEcCC-------------------------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 230 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 230 (1045)
..|.|.+++ |++||.|++||+|++|++..
T Consensus 50 v~G~V~~v~--v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~ 127 (369)
T 1vf7_A 50 VNGIILKRL--FKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAA 127 (369)
T ss_dssp SCEEEEECC--SCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEE--cCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH
Confidence 359999999 99999999999999998632
Q ss_pred --------ceeEEeCCCCeEEEEEeeCCCCeecCC--CeEEEEEe
Q psy6394 231 --------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEV 265 (1045)
Q Consensus 231 --------a~~~i~s~~~G~v~~i~~~~g~~v~vG--~~l~~i~~ 265 (1045)
....|.||++|+|.++.+.+|+.|..| ++|+.|..
T Consensus 128 l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~ 172 (369)
T 1vf7_A 128 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ 172 (369)
T ss_dssp HHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred HHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence 125899999999999999999999995 89999963
No 120
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.67 E-value=0.002 Score=63.10 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=39.6
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeC
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 509 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~ 509 (1045)
|.|+-.-. -++|+.|++||.++.||+.|+..+|.||++|+|.+++-.
T Consensus 54 GdIvfVel-P~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 54 GDLVFIDL-PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp CSEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEc-CCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 34555430 389999999999999999999999999999999999743
No 121
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.55 E-value=0.0028 Score=62.73 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=48.8
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe---e---cCC-CeEEEEEecC
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV---A---LVG-KPLLDIEVED 267 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~---v---~vG-~~l~~i~~~~ 267 (1045)
|.|+-+. .-++|+.|++||.++.||+.|+..+|.||.+|+|.++.-..-+. + +.| ..|+.|+..+
T Consensus 59 GdIvfVe-LP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d 130 (155)
T 3hgb_A 59 GDVVFVQ-LPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS 130 (155)
T ss_dssp CSEEEEE-CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence 4444443 14789999999999999999999999999999999987533222 1 344 4888887543
No 122
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.53 E-value=0.0022 Score=62.47 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=38.7
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.|+-.- --++|++|++||.++.||+.|+..+|.||++|+|.+++
T Consensus 49 Gdiv~Ve-lP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQ-LPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEE-CCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEE-cCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 3455543 03899999999999999999999999999999999996
No 123
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.41 E-value=0.0019 Score=73.45 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=56.9
Q ss_pred ceeEEEEeeeccCCCCeeccCCeEeEEeccc-------------------------------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINEFDVVCEVESDK------------------------------------------------- 490 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~gd~l~~vetdK------------------------------------------------- 490 (1045)
..|.|.+++ +++||.|++||+|+++++..
T Consensus 50 v~G~V~~v~--v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~ 127 (369)
T 1vf7_A 50 VNGIILKRL--FKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAA 127 (369)
T ss_dssp SCEEEEECC--SCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEE--cCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH
Confidence 358999999 99999999999999998742
Q ss_pred --------eeeEEecCCCEEEEEEeeCCCCEEecC--CceEEEeec
Q psy6394 491 --------ASVTITSRYKGTVRKVYYGEGDVALVG--KPLLDIEVE 526 (1045)
Q Consensus 491 --------a~~ei~ap~~G~v~~i~~~~G~~v~vg--~~l~~i~~~ 526 (1045)
....|.||++|+|.++.+++|+.|..| ++|+.|...
T Consensus 128 l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 128 VEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 135899999999999999999999995 899998643
No 124
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.02 E-value=0.0063 Score=60.25 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred eEEEEeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEe
Q psy6394 462 VNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507 (1045)
Q Consensus 462 g~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~ 507 (1045)
|.|+-.-. -++|+.|++||.++.||+.|+..+|.||++|+|.+++
T Consensus 59 GdIvfVeL-P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQL-PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEc-CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 34554430 3899999999999999999999999999999999986
No 125
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=95.74 E-value=0.00069 Score=76.86 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.8
Q ss_pred EEeCCCCeEEEEEeeCCCCeecCCCe---EEEEE
Q psy6394 234 TITSRYKGTVRKVYYGEGDVALVGKP---LLDIE 264 (1045)
Q Consensus 234 ~i~s~~~G~v~~i~~~~g~~v~vG~~---l~~i~ 264 (1045)
.|.||++|+|.++.+.+|+.|..|++ |+.|.
T Consensus 156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 59999999999999999999999998 66553
No 126
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=95.02 E-value=0.0021 Score=72.84 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred EEecCCCEEEEEEeeCCCCEEecCCc---eEEEe
Q psy6394 494 TITSRYKGTVRKVYYGEGDVALVGKP---LLDIE 524 (1045)
Q Consensus 494 ei~ap~~G~v~~i~~~~G~~v~vg~~---l~~i~ 524 (1045)
.|.||++|+|.++.+++|+.|..|++ |+.|.
T Consensus 156 ~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 156 KITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp SCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred EEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 49999999999999999999999998 65553
No 127
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=94.53 E-value=0.1 Score=59.03 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=52.5
Q ss_pred EEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 202 VNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 202 g~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
+.+.+.. ++.||.|++||+|++|+. .+...+|.||.+|+|..+. ....|..|+.|+.|...
T Consensus 275 ~G~~~~~--~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 275 TGLFEPT--HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAVVMED 339 (354)
T ss_dssp CEEEEES--CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEEEEEE
T ss_pred CEEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEEEeee
Confidence 3477777 899999999999999997 5888999999999998664 67789999999999743
No 128
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.29 E-value=0.12 Score=58.01 Aligned_cols=61 Identities=23% Similarity=0.201 Sum_probs=51.3
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.+-+.+.+ ++.||.|++||+|++|.. .....+|.||.+|+|..... .-.|..|+.|+.|..
T Consensus 264 ~~Gl~~~~--v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~V~~G~~l~~Ia~ 328 (331)
T 3na6_A 264 HDGLFEIM--IDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGMIKSGDCAAVIGV 328 (331)
T ss_dssp SCEEEEES--SCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSEECTTCEEEEEEC
T ss_pred CCeEEEEc--CCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCccCCCCEEEEEec
Confidence 34577888 999999999999999997 35678999999999977654 467889999999863
No 129
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=93.61 E-value=0.14 Score=58.08 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=51.8
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc------CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEe
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES------DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 265 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet------dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~ 265 (1045)
.+-|.+.+ ++.||.|++||+|++|-. .....+|.||.+|+|.-.... -.|..|+.|+.|-.
T Consensus 297 ~~Gl~~~~--v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 297 KAGMVEYL--GKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--ASVHQGTELYKVMT 363 (368)
T ss_dssp SCEEEEEC--SCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SEECTTCEEEEEEE
T ss_pred CCEEEEEe--CCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--CccCCCCEEEEEee
Confidence 45677788 999999999999999998 567899999999999766554 67999999999863
No 130
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=93.55 E-value=0.2 Score=51.26 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=58.1
Q ss_pred cHHHHHHhhcC------CCCc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC----CccHH
Q psy6394 3 NVLSVSRSLRS------ICKT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG----TLNEV 71 (1045)
Q Consensus 3 ~~~~~~~~~~s------~~~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g----~i~~~ 71 (1045)
+++.++.|... +... |+|||... +. +++|+..+||+... +... .+|.+
T Consensus 16 vllkI~~H~~r~~~~~~~~~V~G~LLG~~~------------~~-----~v~V~~~f~lp~~~----~~~~~~~~~~d~e 74 (187)
T 2o95_A 16 VLLSVVDHFNRIGKVGNQKRVVGVLLGSWQ------------KK-----VLDVSNSFAVPFDE----DDKDDSVWFLDHD 74 (187)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCEEEEEEEES------------SS-----EEEEEEEEEECEEE----CSSCTTSEEECHH
T ss_pred HHHHHHHHHhhhcccCCCcEEEEEEEEEEc------------CC-----EEEEEEEEEeCCcc----cCCCcchhhcCHH
Confidence 35566666432 2344 99999872 11 37788999998321 1111 56666
Q ss_pred HHHHHh---c--cCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394 72 LLDTIL---G--EFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV 130 (1045)
Q Consensus 72 ~l~~il---~--~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~ 130 (1045)
-+.+.+ + +...+|||||.=- ...|..+..+|.++++.. +.++++++.+..
T Consensus 75 y~~~m~~~~~~v~~~~~iVGWY~s~----~~~s~~d~~i~~~~~~~~-----~~~v~Livd~~~ 129 (187)
T 2o95_A 75 YLENMYGMFKKVNARERIVGWYHTG----PKLHKNDIAINELMKRYC-----PNSVLVIIDVKP 129 (187)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEEECC----SSCCTTHHHHHHHHTTTC-----TTCEEEEECCCT
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCC----CcCCcccHHHHHHHHhcC-----CCCEEEEECCCC
Confidence 555444 3 2235699999733 344677788997665432 345666666544
No 131
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=92.88 E-value=0.25 Score=55.84 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=52.2
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+.+.. ++.||.|++||+|++|+. .+...+|.||.+|+|..+ .....|..|+.|+.|...
T Consensus 277 ~~~~~--~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPT--HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED 339 (354)
T ss_dssp EEEES--CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred EEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence 77777 899999999999999997 588899999999999876 478889999999998754
No 132
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=92.65 E-value=0.24 Score=55.48 Aligned_cols=59 Identities=24% Similarity=0.158 Sum_probs=50.4
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
+.+.+ ++.||.|++||+|++|.. .....+|.||.+|+|.... ..-.|..|+.|+.|...
T Consensus 267 l~~~~--v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 267 LFEIM--IDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEES--SCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEEEECB
T ss_pred EEEEc--CCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEEEecc
Confidence 77778 999999999999999997 3567899999999997764 55778899999998643
No 133
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=92.09 E-value=0.16 Score=50.88 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=51.0
Q ss_pred ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEEE-----------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV----------------------------- 246 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~i----------------------------- 246 (1045)
-.|+|+... +..|.|-. |+-++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~ 92 (161)
T 1f3z_A 19 LSGEIVNIE---DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELK 92 (161)
T ss_dssp SCEEEEEGG---GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGT
T ss_pred CCeEEEEeE---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcC
Confidence 469999874 56787766 8899888876 58899999999999
Q ss_pred ------eeCCCCeecCCCeEEEEE
Q psy6394 247 ------YYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 247 ------~~~~g~~v~vG~~l~~i~ 264 (1045)
++++||.|+.|++|+.++
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEEC
T ss_pred CCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999996
No 134
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=91.72 E-value=0.35 Score=54.86 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=50.4
Q ss_pred EEEeeeccCCCCeeccCCeEeEEec------cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 464 IKEWNGNVTEGARINEFDVVCEVES------DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 464 i~~w~~~v~~Gd~V~~gd~l~~vet------dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
+.+.+ ++.||.|++||+|++|-. .....+|.||.+|+|... ...-.|..|+.|+.|..
T Consensus 300 l~~~~--v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 300 MVEYL--GKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASASVHQGTELYKVMT 363 (368)
T ss_dssp EEEEC--SCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSSEECTTCEEEEEEE
T ss_pred EEEEe--CCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEee
Confidence 67788 999999999999999998 567889999999999776 45678889999988864
No 135
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.79 E-value=0.22 Score=49.51 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=50.2
Q ss_pred ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEE------------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRK------------------------------ 245 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~------------------------------ 245 (1045)
-.|+|+.. -++.|.|-. |+-++...++ ..+.||.+|+|..
T Consensus 14 ~~G~vv~l---~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~ 87 (154)
T 2gpr_A 14 CDGTIITL---DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLD 87 (154)
T ss_dssp SSEEEECG---GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGT
T ss_pred CCeEEEEe---eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcC
Confidence 35888886 456788766 8889888876 5899999999998
Q ss_pred -----EeeCCCCeecCCCeEEEEE
Q psy6394 246 -----VYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 246 -----i~~~~g~~v~vG~~l~~i~ 264 (1045)
+++++||.|+.|++|+.++
T Consensus 88 G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 88 GNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp TCSEEECCCTTCEECTTCEEEEEC
T ss_pred CCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999996
No 136
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=90.06 E-value=0.34 Score=48.43 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=50.6
Q ss_pred ceeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE-----------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV----------------------------- 506 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i----------------------------- 506 (1045)
-.|+|+... ++.|.+-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~ 92 (161)
T 1f3z_A 19 LSGEIVNIE---DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELK 92 (161)
T ss_dssp SCEEEEEGG---GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGT
T ss_pred CCeEEEEeE---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcC
Confidence 368888865 67777766 8888888876 47899999999998
Q ss_pred ------eeCCCCEEecCCceEEEee
Q psy6394 507 ------YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 ------~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|+.++.
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECH
T ss_pred CCccEEEEeCcCEECCCCEEEEECH
Confidence 8899999999999999964
No 137
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=89.84 E-value=0.19 Score=50.38 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=50.2
Q ss_pred ceEEEEEEeccCCCCCeecC----CCeEEEEEcCCceeEEeCCCCeEEEEE-----------------------------
Q psy6394 200 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV----------------------------- 246 (1045)
Q Consensus 200 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~~i~s~~~G~v~~i----------------------------- 246 (1045)
-.|+|+.. .++.|.|-. |+-++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l---~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~ 92 (162)
T 1ax3_A 19 ITGEIHPI---TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLK 92 (162)
T ss_dssp CSEEEEEG---GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTT
T ss_pred CceEEEEe---EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcC
Confidence 46999987 457787766 8888877763 58899999999988
Q ss_pred ------eeCCCCeecCCCeEEEEE
Q psy6394 247 ------YYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 247 ------~~~~g~~v~vG~~l~~i~ 264 (1045)
++++||.|+.|++|+.++
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 93 GEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TTTEEESCCCCSEECSEEEEEEEC
T ss_pred CCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999996
No 138
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=89.54 E-value=0.49 Score=46.28 Aligned_cols=99 Identities=10% Similarity=0.276 Sum_probs=55.0
Q ss_pred cHHHHHHhhcCC-----C--Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHH
Q psy6394 3 NVLSVSRSLRSI-----C--KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLD 74 (1045)
Q Consensus 3 ~~~~~~~~~~s~-----~--~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~ 74 (1045)
+++++..|.+.. . .. |.|||.... .+++|++.++|+.-- -+..-.+|.+-+.
T Consensus 14 vll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~-----------------~~veV~nsF~~p~~~---~~~~~~~d~~y~~ 73 (141)
T 4e0q_A 14 VIMNISEHWTRFRAQHGEPRQVYGALIGKQKG-----------------RNIEIMNSFELKTDV---IGDETVINKDYYN 73 (141)
T ss_dssp HHHHHHHHHHCC------CCEEEEEEEEEEET-----------------TEEEEEEEEECCEEE---ETTEEEECHHHHH
T ss_pred HHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC-----------------CEEEEEEEEEecccC---CCCceeecHHHHH
Confidence 466777777431 1 33 999997631 147788999998311 1111256665555
Q ss_pred HHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeeccc
Q psy6394 75 TILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNV 130 (1045)
Q Consensus 75 ~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~ 130 (1045)
+.+.-. +.++||||.--. .++-.+..+|+++++.. +.-+++++.+..
T Consensus 74 ~m~~~~k~v~~~e~iVGWY~s~~----~~~~~d~~i~~~~~~~~-----~~pV~L~~Dp~~ 125 (141)
T 4e0q_A 74 KKEQQYKQVFSDLDFIGWYTTGD----NPTADDIKIQRQIAAIN-----ECPIMLQLNPLS 125 (141)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEC-----------CHHHHHHHTT-----CCCEEEEESCSC
T ss_pred HHHHHHHHhCCCccEEEEEeCCC----CCCcchHHHHHHHHHHC-----CCCEEEEECCCc
Confidence 444332 356999997642 35566678998877653 224666666554
No 139
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=88.67 E-value=0.37 Score=47.88 Aligned_cols=59 Identities=8% Similarity=0.109 Sum_probs=49.2
Q ss_pred eeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE------------------------------
Q psy6394 461 EVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV------------------------------ 506 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i------------------------------ 506 (1045)
.|+|+... ++.|.+-. |+-++...++ ..+.||++|+|..+
T Consensus 15 ~G~vv~l~---~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G 88 (154)
T 2gpr_A 15 DGTIITLD---EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDG 88 (154)
T ss_dssp SEEEECGG---GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTT
T ss_pred CeEEEEee---ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCC
Confidence 57788754 66777766 8888888876 48999999999984
Q ss_pred -----eeCCCCEEecCCceEEEee
Q psy6394 507 -----YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 -----~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|+.++.
T Consensus 89 ~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 89 NGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp CSEEECCCTTCEECTTCEEEEECH
T ss_pred CceEEEEcCCCEEcCCCEEEEECH
Confidence 7899999999999999964
No 140
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=88.19 E-value=1.3 Score=49.47 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=48.5
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEc----CCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEE
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~ 264 (1045)
.+.+...+ ++.|+.|++||+|+++-. .....+|.||.+|+|.-.. ..-.|..|+.|+.|.
T Consensus 264 ~~G~~~~~--~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 264 SPGIFEPR--CSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILA 327 (332)
T ss_dssp SSEEEEEC--SCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEE
T ss_pred CCeEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEe
Confidence 34566676 889999999999999954 5678899999999996664 455688888998885
No 141
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.46 E-value=1.4 Score=49.38 Aligned_cols=87 Identities=17% Similarity=0.325 Sum_probs=51.8
Q ss_pred cHHHHHHhhc---CC-C-Cc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCC---CccHHHH
Q psy6394 3 NVLSVSRSLR---SI-C-KT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDG---TLNEVLL 73 (1045)
Q Consensus 3 ~~~~~~~~~~---s~-~-~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g---~i~~~~l 73 (1045)
+++++..|.. .. . .+ |.|||... ..+|+|++.++|+- .--+..+ .+|.+-+
T Consensus 14 Vll~I~dH~~R~~~~~~~rViG~LLG~~~-----------------~~~veV~nsF~~p~---~e~~~~~~~~~~D~~y~ 73 (338)
T 4b4t_U 14 VLLSALDHYERTQTKENKRCVGVILGDAN-----------------SSTIRVTNSFALPF---EEDEKNSDVWFLDHNYI 73 (338)
T ss_dssp HHHHHHHHHHHHTTTCCSCCEEEEEEEEC-----------------SSEEEEEEEEECCE---EECSSSTTCEEECHHHH
T ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEeEEc-----------------CCEEEEEEEEEecc---ccCCCCCccccccHHHH
Confidence 4667776642 12 2 44 99999431 12478899999981 1111122 2465544
Q ss_pred HHHhccC-----CCceeEEEEeecccccccchhhHHHHhhhhhhh
Q psy6394 74 DTILGEF-----KADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYF 113 (1045)
Q Consensus 74 ~~il~~~-----~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~ 113 (1045)
++.+.-. +..+||||. |...++-.+..||+.|....
T Consensus 74 ~~m~~~~kkV~~~e~iVGWY~----tg~~~~~~d~~Ih~~~~~~~ 114 (338)
T 4b4t_U 74 ENMNEMCKKINAKEKLIGWYH----SGPKLRASDLKINELFKKYT 114 (338)
T ss_dssp HHHHHHHHHHCCSCEEEEEEE----CCSSCCSTHHHHHHHHGGGC
T ss_pred HHHHHHHhhcCccCCEEEEEe----cCCCCCccHHHHHHHHHhcc
Confidence 4433322 345999996 45567778899997776654
No 142
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=86.44 E-value=0.5 Score=47.34 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=48.9
Q ss_pred ceeEEEEeeeccCCCCeecc----CCeEeEEeccceeeEEecCCCEEEEEE-----------------------------
Q psy6394 460 REVNIKEWNGNVTEGARINE----FDVVCEVESDKASVTITSRYKGTVRKV----------------------------- 506 (1045)
Q Consensus 460 ~eg~i~~w~~~v~~Gd~V~~----gd~l~~vetdKa~~ei~ap~~G~v~~i----------------------------- 506 (1045)
-.|+|+..- ++.|.+-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~---~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~ 92 (162)
T 1ax3_A 19 ITGEIHPIT---DVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLK 92 (162)
T ss_dssp CSEEEEEGG---GSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTT
T ss_pred CceEEEEeE---ECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcC
Confidence 357888854 56777666 8888877773 47899999999988
Q ss_pred ------eeCCCCEEecCCceEEEee
Q psy6394 507 ------YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 ------~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|+.++.
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 93 GEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TTTEEESCCCCSEECSEEEEEEECH
T ss_pred CCccEEEEeCCCEEcCCCEEEEECH
Confidence 7899999999999999974
No 143
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=86.14 E-value=0.82 Score=46.83 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=27.5
Q ss_pred EEeccCCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEE
Q psy6394 206 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246 (1045)
Q Consensus 206 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i 246 (1045)
..+ |++|+.|++||.||+-. .|-+.++|+|.+.
T Consensus 22 ~L~--V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 22 KLH--VNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp EES--CCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred EEE--ECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 346 99999999999999765 7889999998543
No 144
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=82.82 E-value=2.5 Score=47.10 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=47.7
Q ss_pred EEEEeeeccCCCCeeccCCeEeEEec----cceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEee
Q psy6394 463 NIKEWNGNVTEGARINEFDVVCEVES----DKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 463 ~i~~w~~~v~~Gd~V~~gd~l~~vet----dKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~ 525 (1045)
-+.... ++.|+.|++||+|+++-. .....+|.||.+|+|.-.. ..-.|..|+.|+.|..
T Consensus 266 G~~~~~--~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 266 GIFEPR--CSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAILAR 328 (332)
T ss_dssp EEEEEC--SCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEEEE
T ss_pred eEEEEe--CCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEEee
Confidence 355677 899999999999999954 5678899999999997664 5667788888888754
No 145
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=82.01 E-value=1.7 Score=44.54 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=27.3
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEE
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i 506 (1045)
..+ |++|+.|++||.||+-. .|-|.++|+|.+.
T Consensus 22 ~L~--V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 22 KLH--VNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp EES--CCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred EEE--ECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 457 99999999999999765 7888888888433
No 146
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.25 E-value=4.5 Score=44.58 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred cHHHHHHhhcCCCC-c--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHH---HHHHH
Q psy6394 3 NVLSVSRSLRSICK-T--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEV---LLDTI 76 (1045)
Q Consensus 3 ~~~~~~~~~~s~~~-~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~---~l~~i 76 (1045)
+|+.+..|..++.. + |+|+|+.. |. .+++|+..+||+..-+ -...-.++.. .+-+.
T Consensus 33 allkm~~Ha~~~~~~eV~GlLlG~~~--------~~--------~~v~Vt~~f~~P~~~~--~~~v~~~d~~y~~~m~~~ 94 (306)
T 4b4t_V 33 ALLKMLKHGRAGVPMEVMGLMLGEFV--------DD--------YTVNVVDVFAMPQSGT--GVSVEAVDDVFQAKMMDM 94 (306)
T ss_dssp HHHHHHHHTCSCSSSCCEEEEEEEEE--------TT--------TEEEEEEEECCCCEES--SSCEECCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEEEeeEEc--------CC--------eEEEEEEEEeCCcCCC--CCchhcCCHHHHHHHHHH
Confidence 46677778887663 3 99999642 11 2467888899974210 0111123443 23344
Q ss_pred hcc--CCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeecccc
Q psy6394 77 LGE--FKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTNVV 131 (1045)
Q Consensus 77 l~~--~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~~~ 131 (1045)
++. +..++||||.=--...--+|-.+--.|.+++.. ...++.+.+.+..+
T Consensus 95 ~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~-----~~~~V~lV~Dp~~t 146 (306)
T 4b4t_V 95 LKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQL-----NSRAVAVVVDPIQS 146 (306)
T ss_dssp HHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHH-----CSSCEEEEECSSSS
T ss_pred HHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhc-----CCCcEEEEECCCcC
Confidence 443 236699999654333334555554444333332 24466666666543
No 147
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=79.28 E-value=3.4 Score=41.04 Aligned_cols=49 Identities=20% Similarity=0.018 Sum_probs=41.3
Q ss_pred eeEEEEeeeccCCCCeeccCCeEeEEeccceeeE-EecCCCEEEEEEeeCCC
Q psy6394 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVYYGEG 511 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~e-i~ap~~G~v~~i~~~~G 511 (1045)
||-.+-.. +.+|+.|.+||.|+-|.|-|-.+- +.||++|+|.-+.--++
T Consensus 108 eG~~V~~i--~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 108 EGYKVYPI--MDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp CSSEEEEC--CCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred CceEEEEE--cCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 44556667 899999999999999999999887 89999999987764443
No 148
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=78.88 E-value=2.5 Score=41.95 Aligned_cols=49 Identities=20% Similarity=0.018 Sum_probs=40.4
Q ss_pred eEEEEEEeccCCCCCeecCCCeEEEEEcCCceeE-EeCCCCeEEEEEeeCCC
Q psy6394 201 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVT-ITSRYKGTVRKVYYGEG 251 (1045)
Q Consensus 201 eg~i~~w~~~v~~Gd~V~~gd~l~~vetdKa~~~-i~s~~~G~v~~i~~~~g 251 (1045)
||-.+-.. +.+|+.|.+||.|+-|.|-|-++. +.||.+|+|.-+.=-++
T Consensus 108 eG~~V~~i--~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 108 EGYKVYPI--MDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp CSSEEEEC--CCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred CceEEEEE--cCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 45455556 899999999999999999999996 89999999977654433
No 149
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=77.36 E-value=2.5 Score=47.48 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=32.6
Q ss_pred eeEEEEe-----eeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEE
Q psy6394 461 EVNIKEW-----NGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVA 514 (1045)
Q Consensus 461 eg~i~~w-----~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v 514 (1045)
|--|-+| + |++||.|++||.|++= ..+.|..+|.+.-+++.--..+
T Consensus 171 eylip~~~~k~~~--v~~Gd~V~~G~~l~dG------~~~~~~~~~~~e~v~~P~~~~i 221 (352)
T 2xhc_A 171 VYYIPLDVFDRDR--IKKGKEVKQGEMLAEA------RKFFAKVSGRVEVVDYSTRKEI 221 (352)
T ss_dssp EEEEEGGGCCTTT--SCTTCEECTTCEEECC------EEEECSSCEEEEEEECSSCEEE
T ss_pred EEEEcCCCCcCee--eCCCCEEeCCCCcccc------cccccccCceEEEEEccccceE
Confidence 4445555 5 9999999999999864 3467778888876665444433
No 150
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=74.86 E-value=7.2 Score=39.48 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=55.6
Q ss_pred HHHHHhhcCC----CCc-eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCcccc--ccccCCCCccHHHHHHHh
Q psy6394 5 LSVSRSLRSI----CKT-GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESED--LLFSKDGTLNEVLLDTIL 77 (1045)
Q Consensus 5 ~~~~~~~~s~----~~~-gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~--~fy~~~g~i~~~~l~~il 77 (1045)
..++.+..++ ... |||+|.+.. + ...|+..+++++.-+ +++ ..+++.+-+.+
T Consensus 19 ~k~l~hA~~~~~~~~EvcGlL~G~~~~-----------~------~~~V~~v~~~pq~~t~~~~~----~~~~~e~~~~~ 77 (178)
T 2znr_A 19 HKFLQLAESNTVRGIETCGILCGKLTH-----------N------EFTITHVIVPKQSAGPDYCD----MENVEELFNVQ 77 (178)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEEEET-----------T------EEEEEEEEECCEEEETTEEE----ECCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEEEEeeEecC-----------C------CeEEEEEEeCCcCCCCCeec----cCCHHHHHHHH
Confidence 3444444432 255 999998731 1 234667778875310 111 13444455566
Q ss_pred ccCCCceeEEEEeecccccccchhhHHHHhhhhh
Q psy6394 78 GEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSN 111 (1045)
Q Consensus 78 ~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~ 111 (1045)
.++.-++||||.=--+..-.||-++.-.|.+++.
T Consensus 78 ~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~ 111 (178)
T 2znr_A 78 DQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQL 111 (178)
T ss_dssp HHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHH
T ss_pred HhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHh
Confidence 6667789999999888889999999888855554
No 151
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=74.64 E-value=3.5 Score=42.30 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=35.8
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~ 253 (1045)
|++||.|++||.||+. |..+..|-+.++|+|.=-.+.+|.+
T Consensus 66 V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 66 KGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp SCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred ecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 9999999999999976 8999999999999997666666543
No 152
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=70.84 E-value=4.7 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=26.1
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEE
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~ 505 (1045)
..+ |++|+.|++||.||+-. .|-|..+|+|.+
T Consensus 62 ~l~--v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 62 KLH--VNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp EES--CCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEE--ecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 567 99999999999999865 677777777743
No 153
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=66.63 E-value=7.6 Score=39.39 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=41.5
Q ss_pred eeEEEEeeeccCCCCee----ccCCeEeEEeccceeeEEecCCCEEEEEE------------------------------
Q psy6394 461 EVNIKEWNGNVTEGARI----NEFDVVCEVESDKASVTITSRYKGTVRKV------------------------------ 506 (1045)
Q Consensus 461 eg~i~~w~~~v~~Gd~V----~~gd~l~~vetdKa~~ei~ap~~G~v~~i------------------------------ 506 (1045)
.|+++... ++-|.| --||-++..=++- .|-||++|+|..+
T Consensus 42 ~G~vi~L~---eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G 115 (183)
T 3our_B 42 SGEIVNIE---DVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKG 115 (183)
T ss_dssp CEEEEEGG---GSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTT
T ss_pred ceEEEEch---hCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCC
Confidence 45666544 444443 2366666555443 6788999988887
Q ss_pred -----eeCCCCEEecCCceEEEee
Q psy6394 507 -----YYGEGDVALVGKPLLDIEV 525 (1045)
Q Consensus 507 -----~~~~G~~v~vg~~l~~i~~ 525 (1045)
++++||.|+.|++|+.++.
T Consensus 116 ~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 116 EGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp TTEEECSCTTCEECTTCEEEEECH
T ss_pred ccceEEEeCcCEEcCCCEEEEECH
Confidence 4699999999999999974
No 154
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=66.28 E-value=6.7 Score=40.16 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=39.2
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEe
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVAL 515 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~ 515 (1045)
..+ |++|+.|++|+.|++. |..+..|-|.++|+|.--.+-+|.++.
T Consensus 63 ~L~--V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~ 108 (190)
T 2auk_A 63 VLA--KGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT 108 (190)
T ss_dssp EES--SCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEE
T ss_pred EEE--ecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceE
Confidence 457 9999999999999977 899999999999999877777765543
No 155
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=63.32 E-value=17 Score=35.31 Aligned_cols=83 Identities=11% Similarity=0.021 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCccccccccCCCCccHHHHHHHh---
Q psy6394 4 VLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSESEDLLFSKDGTLNEVLLDTIL--- 77 (1045)
Q Consensus 4 ~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l~~~fy~~~g~i~~~~l~~il--- 77 (1045)
+..+.++..+.. .+ |||+|..... ...|+.++||+..-.+= ..-.++.+.+.+.+
T Consensus 9 l~~i~~ha~~~~p~E~cGlL~G~~~~~-----------------~~~v~~~~p~~n~~~~~--~~f~~dp~~~~~~~~~~ 69 (146)
T 2kks_A 9 MEEMLAHARQALPNEACGLLGGRRDGD-----------------DRWVERVYPLNNLDQSP--EHFSMDPREQLTAVKDM 69 (146)
T ss_dssp HHHHHHHHHHHTTSCEEEEEEEEEETT-----------------EEEEEEEECCCCCSCCS--SSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceEEEEEEEEcCC-----------------CcEEEEEEECCCcCCCC--ceEEECHHHHHHHHHHH
Confidence 344555555533 55 9999986411 24577889997432110 11235555555444
Q ss_pred ccCCCceeEEEEeecccccccchhhHHH
Q psy6394 78 GEFKADVVGWYSFTRNQDLSQSLCQLFL 105 (1045)
Q Consensus 78 ~~~~k~viGWyrfRrns~~~~s~re~~~ 105 (1045)
.+..-++||||.=--+..-.||-.|...
T Consensus 70 ~~~g~~ivG~~HSHP~~~~~PS~~D~~~ 97 (146)
T 2kks_A 70 RKNGWVMLGNFHSHPATPARPSAEDKRL 97 (146)
T ss_dssp HHHTCEEEEEEEEESSSCSSCCHHHHTT
T ss_pred HHCCCEEEEEEeCCCcCCCCCCHHHHHh
Confidence 3334579999999999999999988653
No 156
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=51.10 E-value=37 Score=33.04 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=49.6
Q ss_pred HHHHHHhhcCCC-Cc--eeEeeeeEEEEeeeeecCCCCcceEEEEEEEeeeEeCCcc--c---ccc-ccCCCCccHHHHH
Q psy6394 4 VLSVSRSLRSIC-KT--GFLFGEIHRKVSNVTTDSHSNNETVEITVSITATLPFSES--E---DLL-FSKDGTLNEVLLD 74 (1045)
Q Consensus 4 ~~~~~~~~~s~~-~~--gfL~Gev~~~~~~~isDs~~~~~~~~~~i~i~~~~pc~~l--~---~~f-y~~~g~i~~~~l~ 74 (1045)
+..+.++..+.. .+ |||+|.... .+ ++.|+.++||... - +.| +++. ...+..
T Consensus 8 l~~i~~ha~~~~p~E~cGlL~G~~~~-----------~~-----~~~v~~~~p~~n~~~~~~~~~f~~dp~---~~~~~~ 68 (153)
T 2kcq_A 8 LDQIRVHGADAYPEEGCGFLLGTVTD-----------DG-----DNRVAALHRATNRRSEQRTRRYELTAD---DYRAAD 68 (153)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEEECT-----------TS-----CEEEEEEEESSCCCCCCCSCCSSCCCC---SHHHHH
T ss_pred HHHHHHHHHhcCCcceEEEEEEeecc-----------CC-----CeEEEEEEECCCCCCCCCCcEEEECHH---HHHHHH
Confidence 445555665543 44 999998631 11 1456678999753 1 011 1221 223333
Q ss_pred HHhccCCCceeEEEEeecccccccchhhH
Q psy6394 75 TILGEFKADVVGWYSFTRNQDLSQSLCQL 103 (1045)
Q Consensus 75 ~il~~~~k~viGWyrfRrns~~~~s~re~ 103 (1045)
+-+..+..++||||.=--+..-.||-.++
T Consensus 69 ~~~~~~g~~ivG~yHSHP~~~~~PS~~D~ 97 (153)
T 2kcq_A 69 AAAQEQGLDVVGVYHSHPDHPARPSATDL 97 (153)
T ss_dssp HHHHHHTCEEEEEEEECSSSSSSCCHHHH
T ss_pred HHHHHCCCeEEEEEeCCCCCCCCCCHHHH
Confidence 33444456799999999999999999995
No 157
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=49.87 E-value=13 Score=48.05 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCe
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~ 253 (1045)
|++||.|++||.||+. |-.+..|-|.++|+|.=..+.+|-+
T Consensus 1005 v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t 1045 (1407)
T 3lu0_D 1005 KGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 1045 (1407)
T ss_dssp SCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTT
T ss_pred EcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCce
Confidence 9999999999999987 6678899999999987555555544
No 158
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=45.47 E-value=18 Score=40.48 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=39.9
Q ss_pred CCCCCeecCCCeEEEEEcCCceeEEeCCCCeEEEEEeeCCCCeecCCCeEEEEEec
Q psy6394 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266 (1045)
Q Consensus 211 v~~Gd~V~~gd~l~~vetdKa~~~i~s~~~G~v~~i~~~~g~~v~vG~~l~~i~~~ 266 (1045)
++.|+.|++||+|+++- | -+|.+|++|.+.- .. .-.|..|+.++.+-.+
T Consensus 281 ~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 281 VENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVCE 329 (350)
T ss_dssp CCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEEE
T ss_pred ccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEEE
Confidence 78899999999999994 4 7889999998643 33 5679999988888643
No 159
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=43.07 E-value=68 Score=33.25 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHhccCCCceeEEEEeecccccccchhhHHHHhhhhhhhhcCCcccEEEEEeecc
Q psy6394 75 TILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRISTN 129 (1045)
Q Consensus 75 ~il~~~~k~viGWyrfRrns~~~~s~re~~~h~~~~~~~~~~~~~~~~~~l~t~~ 129 (1045)
+......-++||||.=--+....||-++.-.|.+++.. .+ .++.+...+.
T Consensus 108 ~~~~~~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~---~~--~~I~IVvsP~ 157 (211)
T 3rzv_A 108 LIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMM---LP--ESVAIVCSPK 157 (211)
T ss_dssp HHHHHHTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHH---CT--TCEEEEEETT
T ss_pred HHHhhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhc---CC--CeEEEEEcCC
Confidence 33333456799999877777789999999999555544 33 3444444444
No 160
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=40.94 E-value=15 Score=37.27 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEeccCCCCCeecCCCeEEEEEc
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
-+++ |++||+|++||+|+++.-
T Consensus 118 F~~~--V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 118 FTRI--AEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp EEEC--SCTTCEECTTCEEEEECH
T ss_pred ceEE--EeCcCEEcCCCEEEEECH
Confidence 3678 999999999999999854
No 161
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=39.12 E-value=22 Score=46.05 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=38.0
Q ss_pred EeeeccCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEe
Q psy6394 466 EWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVAL 515 (1045)
Q Consensus 466 ~w~~~v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~ 515 (1045)
..+ |++||.|++||.|++. |--+..|-|.++|+|.--.+.+|-.+.
T Consensus 1002 ~l~--v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t~~ 1047 (1407)
T 3lu0_D 1002 VLA--KGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT 1047 (1407)
T ss_dssp EES--SCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTTEE
T ss_pred EEE--EcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCceeE
Confidence 467 9999999999999987 677888999999999876666665543
No 162
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=31.64 E-value=52 Score=38.29 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=36.5
Q ss_pred EEcCCceeEEeCCCCeEEE-----------------------------EEeeCCCCeecCCCeEEEEEecCc
Q psy6394 226 VESDKASVTITSRYKGTVR-----------------------------KVYYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 226 vetdKa~~~i~s~~~G~v~-----------------------------~i~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
+-..+...+|.|+.+|+|. .++++.||.|..|++|++|-.+.+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCCh
Confidence 4557788899999999994 567889999999999999987654
No 163
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.44 E-value=58 Score=37.31 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=35.0
Q ss_pred EeccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeecCc
Q psy6394 486 VESDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 486 vetdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
+..-+ ..+|.|+.+|+|..| +.+.||.|..|++|+.|....+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 34566 888999999999887 4588999999999999987644
No 164
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=28.24 E-value=62 Score=37.23 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=34.8
Q ss_pred eccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeecCc
Q psy6394 487 ESDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 487 etdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
..-+...+|.|+.+|+|..| +.+.||.|..|++|+.|....+
T Consensus 330 ~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 330 PKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 34566788999999999887 4588999999999999986644
No 165
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=27.59 E-value=67 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=35.9
Q ss_pred EEcCCceeEEeCCCCeEEEE-------------------------------EeeCCCCeecCCCeEEEEEecCc
Q psy6394 226 VESDKASVTITSRYKGTVRK-------------------------------VYYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 226 vetdKa~~~i~s~~~G~v~~-------------------------------i~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
+...+...+|.|+.+|+|.+ ++.+.||.|..|++|++|-.+.+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 45577888999999999954 56788999999999999987654
No 166
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=27.33 E-value=38 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++|+..
T Consensus 73 v~~~--~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 73 VLDR--VEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEE--CCTTCEECTTCEEEEEEEE
T ss_pred EEEE--cCCCCEecCCcEEEEEEEe
Confidence 5899 9999999999999998853
No 167
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=27.25 E-value=63 Score=37.04 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.8
Q ss_pred EEcCCceeEEeCCCCeEEEE-------------------------------EeeCCCCeecCCCeEEEEEecCc
Q psy6394 226 VESDKASVTITSRYKGTVRK-------------------------------VYYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 226 vetdKa~~~i~s~~~G~v~~-------------------------------i~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
+...+ ..+|.|+.+|+|.. ++.+.||.|..|++|++|-.+.+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 34567 88999999999954 56788999999999999987654
No 168
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=26.50 E-value=37 Score=36.89 Aligned_cols=23 Identities=35% Similarity=0.248 Sum_probs=20.5
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++|+..
T Consensus 74 v~~~--~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 74 FTPL--VAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEES--SCTTCEECTTCEEEEEEEE
T ss_pred EEEE--cCCCCCccCCCEEEEEEEc
Confidence 5899 9999999999999998853
No 169
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=26.17 E-value=38 Score=36.79 Aligned_cols=23 Identities=9% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++++..
T Consensus 77 v~~~--~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 77 ITWL--YSDAQKVPANARIFELKGN 99 (287)
T ss_dssp EEES--SCTTCEECTTCEEEEEEEE
T ss_pred EEEE--eCCCCEeeCCCEEEEEEEc
Confidence 4899 9999999999999998853
No 170
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=25.47 E-value=39 Score=37.72 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=39.7
Q ss_pred cCCCCeeccCCeEeEEeccceeeEEecCCCEEEEEEeeCCCCEEecCCceEEEeec
Q psy6394 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526 (1045)
Q Consensus 471 v~~Gd~V~~gd~l~~vetdKa~~ei~ap~~G~v~~i~~~~G~~v~vg~~l~~i~~~ 526 (1045)
++.|+.|++||+|+++- | .+|.+|.+|.+.-. . .-.|..|+.++.+...
T Consensus 281 ~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 281 VENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIVF--P-NRHVAIGQRAALMVCE 329 (350)
T ss_dssp CCBTEECCTTCEEEEET-T---EEEECSSSSCEEES--C-CTTCCTTSEEEEEEEE
T ss_pred ccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEEe--c-CCCCCCCcEEEEEEEE
Confidence 88999999999999994 3 78899999986543 3 5778889988877543
No 171
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=25.42 E-value=40 Score=36.80 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.4
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++|+..
T Consensus 86 v~~~--~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 86 YEIH--KKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEEC--CCTTCEECSSCEEEEEEEE
T ss_pred EEEE--eCCCCEeeCCCEEEEEEEC
Confidence 4899 9999999999999998853
No 172
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.24 E-value=35 Score=37.06 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|++||+|++|+..
T Consensus 73 v~~~--~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 73 SKFN--VEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp EEES--CCTTCEEESCEEEEEEEEE
T ss_pred EEEE--cCCCCCcCCCCEEEEEEEc
Confidence 5899 9999999999999998853
No 173
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.84 E-value=62 Score=37.29 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=34.9
Q ss_pred eccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEeecCc
Q psy6394 487 ESDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVEDE 528 (1045)
Q Consensus 487 etdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~~~~~ 528 (1045)
..-+...+|.|+.+|+|..| +.+.||.|..|++|+.|....+
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 34566788999999999888 4588999999999999987644
No 174
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=24.04 E-value=80 Score=36.34 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.8
Q ss_pred ccceeeEEecCCCEEEEEE-------------------------------eeCCCCEEecCCceEEEe
Q psy6394 488 SDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIE 524 (1045)
Q Consensus 488 tdKa~~ei~ap~~G~v~~i-------------------------------~~~~G~~v~vg~~l~~i~ 524 (1045)
.-+...+|.|+.+|+|..| +.+.||.|..|++|+.|.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 3456788999999999888 458999999999999998
No 175
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=23.89 E-value=44 Score=36.47 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEeccCCCCCeecCCCeEEEEEc
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
++|+ +++|+.|++||+|++|+.
T Consensus 88 v~~~--~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWR--HREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEES--SCTTCEECTTCEEEEEEE
T ss_pred EEEE--cCCCCEecCCCEEEEEEe
Confidence 4899 999999999999999885
No 176
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=23.33 E-value=50 Score=35.53 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEeccCCCCCeecCCCeEEEEEc
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
++|. +++|+.|.+||+|++|+.
T Consensus 60 v~~~--~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQT--IKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEE--CCTTCEECTTCEEEEEEE
T ss_pred EEEE--cCCCCCcCCCCEEEEEEe
Confidence 4788 999999999999999885
No 177
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=22.85 E-value=48 Score=36.60 Aligned_cols=22 Identities=23% Similarity=0.682 Sum_probs=20.1
Q ss_pred EEEeccCCCCCeecCCCeEEEEEc
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVES 228 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vet 228 (1045)
++|+ +++|+.|++||+|++|+.
T Consensus 110 v~~~--~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 110 IEWH--VQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEES--SCTTCEECTTCEEEEEEE
T ss_pred EEEE--eCCCCEecCCCEEEEEEe
Confidence 5899 999999999999999885
No 178
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=22.06 E-value=50 Score=36.02 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEeccCCCCCeecCCCeEEEEEcC
Q psy6394 205 KEWNGNVTEGARINEFDVVCEVESD 229 (1045)
Q Consensus 205 ~~w~~~v~~Gd~V~~gd~l~~vetd 229 (1045)
++|+ +++|+.|.+|++|++|+..
T Consensus 87 v~~~--~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 87 LTWH--VDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp EEES--CCTTCEECTTCEEEEEEEE
T ss_pred EEEE--cCCCCEecCCCEEEEEEEc
Confidence 5899 9999999999999998853
No 179
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=20.80 E-value=50 Score=38.00 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=13.5
Q ss_pred EeeCCCCeecCCCeEEEEE
Q psy6394 246 VYYGEGDVALVGKPLLDIE 264 (1045)
Q Consensus 246 i~~~~g~~v~vG~~l~~i~ 264 (1045)
++++.||.|..|++|++|-
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 4566777777777777776
No 180
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=20.76 E-value=62 Score=37.34 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=35.7
Q ss_pred EEcCCceeEEeCCCCeEEEEE-------------------------------eeCCCCeecCCCeEEEEEecCc
Q psy6394 226 VESDKASVTITSRYKGTVRKV-------------------------------YYGEGDVALVGKPLLDIEVEDE 268 (1045)
Q Consensus 226 vetdKa~~~i~s~~~G~v~~i-------------------------------~~~~g~~v~vG~~l~~i~~~~~ 268 (1045)
+...+...+|.|+.+|+|..| +.+.||.|..|++|++|-.+.+
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 445777888999999999654 5788999999999999987654
No 181
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=20.18 E-value=1.2e+02 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=23.1
Q ss_pred CCCceeEEEEeecccccccchhhHHHH
Q psy6394 80 FKADVVGWYSFTRNQDLSQSLCQLFLA 106 (1045)
Q Consensus 80 ~~k~viGWyrfRrns~~~~s~re~~~h 106 (1045)
...+++|||.=--+..-.||-.+....
T Consensus 61 ~~~~ivG~~HSHP~~~~~PS~~D~~~~ 87 (124)
T 1oi0_A 61 IGMKVFGTVHSHPSPSCRPSEEDLSLF 87 (124)
T ss_dssp CCCEEEEEEEEESSSCCSCCHHHHHHH
T ss_pred CCCEEEEEEEECcCCCCccCHHHHHhh
Confidence 457799999999999999999997654
Done!