RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6394
(1045 letters)
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 339 bits (872), Expect = e-107
Identities = 157/457 (34%), Positives = 229/457 (50%), Gaps = 61/457 (13%)
Query: 450 FNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 509
LA GEGI E + W V EG ++ EF +CEV+SDKA++ ITSRYKG V ++ +
Sbjct: 1 VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFS 58
Query: 510 EGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET-------- 561
GD+ VG+ LL I VED ++ L ++ VS + + +
Sbjct: 59 PGDIVKVGETLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRH 118
Query: 562 LHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVK 621
L K ID ++ GTGK GRVLKED++ Y K
Sbjct: 119 LAKQ-YGIDLNDILGTGKDGRVLKEDVLKYAAQ--------------------------K 151
Query: 622 GMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI 681
G+ K + A E + S D+T I
Sbjct: 152 GVVKDSSSAEEATIAEQEEFSTSVSTPT---------EQSYEDKT--------------I 188
Query: 682 PIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIK 741
P+RG+ + M K+MT A +P EE++ L ++K +K T++PF IK
Sbjct: 189 PLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQEN-NTDPTVKHTFLPFLIK 247
Query: 742 ALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRE 801
+LS+ ++++P+LN+ + I + HNI +A+ T+HGLVVPNIK+V L LL+IT+E
Sbjct: 248 SLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKE 307
Query: 802 LLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFD 861
L R+Q + E K+ P DI GGTI++SN+G +GG P++ +V I+A G+IQ +PRF
Sbjct: 308 LSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFV 367
Query: 862 AEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
+ + I+ VT ADHRV+DGATVAR WKS
Sbjct: 368 DDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSY 404
Score = 184 bits (470), Expect = 8e-51
Identities = 74/143 (51%), Positives = 98/143 (68%)
Query: 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
I + HNI +A+ T+HGLVVPNIK+V LSLL+IT+EL R+Q + E K+ P DI GGT
Sbjct: 270 IRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGT 329
Query: 961 ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
I++SN+G +GG P++ +V I+A G+IQ +PRF + V I+ VT ADHRV+
Sbjct: 330 ITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVL 389
Query: 1021 DGATVARAATLWKSLVENPALLL 1043
DGATVAR WKS VE P LL+
Sbjct: 390 DGATVARFCNEWKSYVEKPELLM 412
Score = 143 bits (363), Expect = 1e-36
Identities = 73/251 (29%), Positives = 99/251 (39%), Gaps = 65/251 (25%)
Query: 190 FKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYG 249
LA GEGI E + W V EG ++ EF +CEV+SDKA++ ITSRYKG V ++ +
Sbjct: 1 VPLAQTGEGIAECELLRWF--VKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFS 58
Query: 250 EGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKV 309
GD+ VG+ LL I VED D P S +
Sbjct: 59 PGDIVKVGETLLKIMVEDSQHLRS-----DSLLLPTDSSNIVSLAESDERGSNLSG---- 109
Query: 310 NREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGT 369
+L+TP+VR + K Y ID ++ GT
Sbjct: 110 ------------------------------------VLSTPAVRHLAKQYGIDLNDILGT 133
Query: 370 GKQGRVLKEDIITYM---------------NSPIDETNLAHTAHVREASN---VISIRGY 411
GK GRVLKED++ Y E + E S I +RG+
Sbjct: 134 GKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGF 193
Query: 412 VKGMFKSMTEA 422
+ M K+MT A
Sbjct: 194 QRAMVKTMTAA 204
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 289 bits (743), Expect = 1e-86
Identities = 134/472 (28%), Positives = 207/472 (43%), Gaps = 74/472 (15%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
++ + DIGE I EV + EW V G + E + VE+DKA++ I S G V+++
Sbjct: 120 VEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAA------------EEADSLDRKAAPGVSEVNTPDTS 555
GD VG L+ IEV AA A AA P +
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Query: 556 DQPNETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHV 607
P + H P +D +++GTGK+GR+ KED+ ++ A A
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAA 296
Query: 608 REASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETN 667
+P +VD ++ +++ +
Sbjct: 297 AAGGG----------------GLGLLP----WPKVDFSKFGEIETK-------------- 322
Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
P+ K ++ + TIP + +E D T L ++ Q+
Sbjct: 323 --------------PLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEA- 367
Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
EK +KLT +PFFIKA+ + E P+ NAS+D + + NI A+DT +GLVVP
Sbjct: 368 EKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPV 427
Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
IK V+K LL+I RE+ + + +GK+ P D+QGG ++S++G +GGT PII +V
Sbjct: 428 IKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEV 487
Query: 847 CIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
I+ GK Q+ P V + +L ++ + DHRV+DGAT AR K L
Sbjct: 488 AILGVGKSQMKP-VWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQL 538
Score = 165 bits (421), Expect = 4e-43
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
+ + NI A+DT +GLVVP IK V+K SLL+I RE+ + + +GK+ P D+QG
Sbjct: 403 DELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQG 462
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
G ++S++G +GGT PII +V I+ GK Q+ P V + +L ++ + DHR
Sbjct: 463 GCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKP-VWDGKEFVPRLMLPLSLSYDHR 521
Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
V+DGAT AR K L+ +P +L
Sbjct: 522 VIDGATAARFTNYLKQLLADPRRML 546
Score = 112 bits (282), Expect = 1e-25
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
++ K+ DIGE I EV + EW V G + E + VE+DKA++ I S G V+++
Sbjct: 120 VEVKVPDIGE-ITEVEVIEWL--VKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
GD VG L+ IEV AA A + AAP + P +
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPA---AAAPAAAAAAAPAPAPAA--------- 224
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
A + H A+P+VRR+ + +D +++
Sbjct: 225 -----AAAPAAAAPAAAAAPGKAPH---------------ASPAVRRLARELGVDLSQVK 264
Query: 368 GTGKQGRVLKEDIITY 383
GTGK+GR+ KED+ +
Sbjct: 265 GTGKKGRITKEDVQAF 280
Score = 85.6 bits (213), Expect = 4e-17
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+FK+ DIGE + EV + EW V EG + E + VE+DKA++ I S G V+++
Sbjct: 3 IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET 301
GD VG L IE AA + AA + +
Sbjct: 60 VKVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAA 113
Score = 82.9 bits (206), Expect = 3e-16
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+F + DIGE + EV + EW V EG + E + VE+DKA++ I S G V+++
Sbjct: 3 IEFKVPDIGE-VVEVEVIEWL--VKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIK 59
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNET 561
GD VG L IE AA + AA + +
Sbjct: 60 VKVGDTVSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAA 113
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide acyltransferase (E2) component, and
related enzymes [Energy production and conversion].
Length = 404
Score = 236 bits (603), Expect = 5e-69
Identities = 120/450 (26%), Positives = 195/450 (43%), Gaps = 73/450 (16%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + D+GE + E I EW G ++ E DV+ EVE+DKA++ + + G + K+
Sbjct: 3 IEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETL----- 562
EGD VG + IE E A + AA S T ++
Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120
Query: 563 -HKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVK 621
ID +++GTG GR+ K+D+ + +
Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAA---------------------- 158
Query: 622 GMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVI 681
+ E + + ++K I
Sbjct: 159 ----AAPAPAAAAPASAAGEEERVPMSRIRK---------------------------AI 187
Query: 682 PIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFI 740
R M E+ TIP L L EVD T+L ++ ++ +++K +KLT++ F +
Sbjct: 188 AER---------MVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLV 237
Query: 741 KALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITR 800
KA+ + + P +NASID E I+ + NI IA+DT GLVVP I+ +K L +I +
Sbjct: 238 KAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAK 297
Query: 801 ELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRF 860
E+ + + +GK+ P ++QGGT ++SN+G G + PII P QV I+ G I+ P
Sbjct: 298 EIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVV 357
Query: 861 DAEMRIVAKCILNVTWAADHRVVDGATVAR 890
+V ++ ++ + DHRV+DGA AR
Sbjct: 358 VGGEIVVRP-MMYLSLSYDHRVIDGAEAAR 386
Score = 125 bits (316), Expect = 1e-30
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 897 SLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDI 956
E I+ + NI IA+DT GLVVP I+ +K SL +I +E+ + + +GK+ P ++
Sbjct: 257 DGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEM 316
Query: 957 QGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAAD 1016
QGGT ++SN+G G + PII P QV I+ G I+ P VV ++ ++ + D
Sbjct: 317 QGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRP-MMYLSLSYD 375
Query: 1017 HRVVDGATVARAATLWKSLVENPALLLT 1044
HRV+DGA AR K L+E+P LL
Sbjct: 376 HRVIDGAEAARFLVALKELLEDPERLLL 403
Score = 103 bits (259), Expect = 2e-23
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 53/241 (21%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ K+ D+GE + E I EW G ++ E DV+ EVE+DKA++ + + G + K+
Sbjct: 3 IEIKMPDLGETMTEGTIVEWL--KKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
EGD VG + IE E A + AA S T ++
Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGR-------- 112
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
+LA+P+VRR+ + ID +++
Sbjct: 113 --------------------------------------VLASPAVRRLAREAGIDLSKVK 134
Query: 368 GTGKQGRVLKEDIITY-----MNSPIDETNLAHTAHVREASNVISIRGYVKGMFKSMTEA 422
GTG GR+ K+D+ + A A + + K + + M E+
Sbjct: 135 GTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVES 194
Query: 423 H 423
Sbjct: 195 K 195
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 235 bits (603), Expect = 1e-68
Identities = 137/473 (28%), Positives = 198/473 (41%), Gaps = 91/473 (19%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+F + D+GEG+ E I EW V G + E + EVE+DKA+V I S GTV K+
Sbjct: 3 FEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPN 567
EGDV VG + I EE + AA +
Sbjct: 61 VEEGDVVPVGSVIAVI---------EEEGEAEAAAAAEAAPEAPAPEPAPAAAA------ 105
Query: 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSM 627
+ + A A A+ S
Sbjct: 106 -------------------------AAAAAPAAAAAPAAPAAAAAKAS------------ 128
Query: 628 TEANTIPS-LRLTEE--VDTTQLRDVK---------KEDIITYMNSPSDETNPAHTAHV- 674
P+ +L E VD L VK KED+ + + A A
Sbjct: 129 ------PAVRKLARELGVD---LSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAA 179
Query: 675 -----REASNVIPIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKNQVSALYQEK 728
E +P+ G K + K M E+ IP LT+EVD T L ++ Q+ A
Sbjct: 180 PPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKA----- 234
Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
+KLT F IKA++L + + P LNAS D + I++ NI IA+ T GL+VP I+
Sbjct: 235 IGVKLTVTDFLIKAVALALKKFPELNASWD--DDAIVLKKYVNIGIAVATDGGLIVPVIR 292
Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCI 848
+K L ++ RE+ + + EGK+ P ++QGGT ++SN+G GG PII P +V I
Sbjct: 293 DADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAI 352
Query: 849 VAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA-ATLWKSLEN 900
+ G I P IV + ++ ++ + DHRV+DGA AR L + LEN
Sbjct: 353 LGVGAIVERPVVVDGE-IVVRKVMPLSLSFDHRVIDGADAARFLKALKELLEN 404
Score = 139 bits (353), Expect = 2e-35
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
+ I++ NI IA+ T GL+VP I+ +K SL ++ RE+ + + EGK+ P ++QG
Sbjct: 266 DAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQG 325
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
GT ++SN+G GG PII P +V I+ G I P VV K ++ ++ + DHR
Sbjct: 326 GTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRK-VMPLSLSFDHR 384
Query: 1019 VVDGATVARAATLWKSLVENPALLLT 1044
V+DGA AR K L+ENPALLL
Sbjct: 385 VIDGADAARFLKALKELLENPALLLL 410
Score = 126 bits (320), Expect = 4e-31
Identities = 62/242 (25%), Positives = 92/242 (38%), Gaps = 42/242 (17%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+FK+ D+GEG+ E I EW V G + E + EVE+DKA+V I S GTV K+
Sbjct: 3 FEFKMPDLGEGMTEGEIVEWL--VKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
EGDV VG + IE E E AA A++ AP + + P
Sbjct: 61 VEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAP 120
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
A+P+VR++ + +D ++
Sbjct: 121 AA----------------------------------AAAKASPAVRKLARELGVDLSTVK 146
Query: 368 GTGKQGRVLKEDIITYMNSPIDETNLAHTAHV------REASNVISIRGYVKGMFKSMTE 421
G+G GR+ KED+ + A A E + + G K + K M E
Sbjct: 147 GSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVE 206
Query: 422 AH 423
+
Sbjct: 207 SK 208
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 212
Score = 215 bits (550), Expect = 4e-64
Identities = 82/212 (38%), Positives = 126/212 (59%), Gaps = 5/212 (2%)
Query: 694 MTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPI 752
MTE+ TIP LT+EVD T L ++ ++ +++ LKLT++ F +KA++L + E P
Sbjct: 1 MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKE-GLKLTFLDFLVKAVALALKEFPE 59
Query: 753 LNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEG 812
LNAS D E I+ NI IA+ T GL+VP I++ ++ LL+I +E+ + + +G
Sbjct: 60 LNASWDGDAE-IVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDG 118
Query: 813 KVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCIL 872
K+ P D+QGGT ++SN+G G T PII P QV I+ G I+ P + IV + ++
Sbjct: 119 KLKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVV-VDGEIVIRKVM 177
Query: 873 NVTWAADHRVVDGATVARAATLWKS-LENILV 903
++ + DHRV+DGA AR K LEN +
Sbjct: 178 PLSLSFDHRVIDGAEAARFLNDLKELLENPEL 209
Score = 166 bits (423), Expect = 7e-47
Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 28/197 (14%)
Query: 852 GKIQLLPRFDAEMRIVAKC-----ILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
K+ L ++ VA LN +W D I+
Sbjct: 38 LKLTFLDFL---VKAVALALKEFPELNASWDGDAE-------------------IVYKKY 75
Query: 907 HNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNV 966
NI IA+ T GL+VP I++ ++ SLL+I +E+ + + +GK+ P D+QGGT ++SN+
Sbjct: 76 VNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGKLKPEDLQGGTFTISNL 135
Query: 967 GNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
G G T PII P QV I+ G I+ P V+ K ++ ++ + DHRV+DGA A
Sbjct: 136 GMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDGEIVIRK-VMPLSLSFDHRVIDGAEAA 194
Query: 1027 RAATLWKSLVENPALLL 1043
R K L+ENP LLL
Sbjct: 195 RFLNDLKELLENPELLL 211
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase;
Validated.
Length = 633
Score = 172 bits (438), Expect = 7e-45
Identities = 119/474 (25%), Positives = 212/474 (44%), Gaps = 78/474 (16%)
Query: 451 NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510
N+ DIG EV + E V G ++ + VE DKAS+ + + + GTV+++
Sbjct: 210 NVPDIGGD--EVEVTEVMVKV--GDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV 265
Query: 511 GDVALVGKPLLDIEVEDEGVAAEEADSLD--------RKAAPGVSEVNTPDTSDQ---PN 559
GD G ++ EVE AA A + AP + + + +
Sbjct: 266 GDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAEND 325
Query: 560 ETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREAS 611
+H P ++ +++GTG++GR+LKED+ Y+ D A A A+
Sbjct: 326 AYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVK---DAVKRAEAAPAAAAA 382
Query: 612 NVISIRGYVKGMFKSMTEANTIPSLRLT--EEVDTTQLRDVKKEDIITYMNSPSDETNPA 669
G G+ P + + E++ +L ++K I+ N
Sbjct: 383 G-----GGGPGLL-------PWPKVDFSKFGEIEEVELGRIQK---ISGANL-------- 419
Query: 670 HTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSAL-YQEK 728
R +V IP + ++ D T+L + Q +A + K
Sbjct: 420 -------------HRNWVM-----------IPHVTQFDKADITELEAFRKQQNAEAEKRK 455
Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
+K+T + F +KA++ + + P N+S+ + + + NI IA+DT +GLVVP K
Sbjct: 456 LGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFK 515
Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCI 848
VNK +++++REL+ I + +GK+ D+QGG ++S++G +G T PI+ +V I
Sbjct: 516 DVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAI 575
Query: 849 VAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
+ K + P ++ + + +L ++ + DHRV+DGA AR T+ L +I
Sbjct: 576 LGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDI 628
Score = 104 bits (262), Expect = 5e-23
Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
NI IA+DT +GLVVP K VNK +++++REL+ I + +GK+ D+QGG ++S++G
Sbjct: 498 NIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIG 557
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
+G T PI+ +V I+ K + P ++ + + +L ++ + DHRV+DGA AR
Sbjct: 558 GLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-EFAPRLMLPLSLSYDHRVIDGADGAR 616
Query: 1028 AATLWKSLVEN 1038
T+ + +
Sbjct: 617 FITIINDRLSD 627
Score = 68.1 bits (167), Expect = 1e-11
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253
DIG EV + E V G ++ + VE DKAS+ + + + GTV+++ GD
Sbjct: 213 DIGGD--EVEVTEVMVKV--GDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 268
Query: 254 ALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREP 313
G ++ EVE G A A + AAP + + P
Sbjct: 269 VKTGSLIMRFEVE--GAAPAAAPAKQEAAAPAPAAAKAEAPAAAP--------------- 311
Query: 314 IAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQG 373
A K + + + + A H ATP VRR+ + + ++ +++GTG++G
Sbjct: 312 -AAKAEGKSEFAENDAYVH---------------ATPLVRRLAREFGVNLAKVKGTGRKG 355
Query: 374 RVLKEDIITYMN 385
R+LKED+ Y+
Sbjct: 356 RILKEDVQAYVK 367
Score = 58.5 bits (142), Expect = 1e-08
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + DIG EV + E V G ++ + VE DKAS+ + S G V+++
Sbjct: 3 IEIKVPDIGAD--EVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRK-----AAPGVS---EVNTPD 553
GD G ++ E D A A + ++K AAP + +V+ PD
Sbjct: 59 VKVGDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPD 112
Score = 58.1 bits (141), Expect = 2e-08
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ K+ DIG EV + E V G ++ + VE DKAS+ + S G V+++
Sbjct: 3 IEIKVPDIGAD--EVEVTEIL--VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIK 58
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRK-----AAPGVS---EVNTPD 293
GD G ++ E D A A + ++K AAP + +V+ PD
Sbjct: 59 VKVGDKVETGALIMIFESADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVHVPD 112
Score = 53.9 bits (130), Expect = 4e-07
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
++ DIG EV + E V G + + VE DKAS+ + + + GTV+++
Sbjct: 105 AKDVHVPDIGSD--EVEVTEIL--VKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI 160
Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDR------KAAPGVSEVNTPD 553
GD G ++ EV E AA A + AA GV +VN PD
Sbjct: 161 KVNVGDKVSTGSLIMVFEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPD 213
Score = 53.5 bits (129), Expect = 4e-07
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 194 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 253
DIG EV + E V G + + VE DKAS+ + + + GTV+++ GD
Sbjct: 112 DIGSD--EVEVTEIL--VKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 167
Query: 254 ALVGKPLLDIEVEDEGVAAEEADSLDR------KAAPGVSEVNTPD 293
G ++ EV E AA A + AA GV +VN PD
Sbjct: 168 VSTGSLIMVFEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDVNVPD 213
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 160 bits (407), Expect = 1e-41
Identities = 113/481 (23%), Positives = 210/481 (43%), Gaps = 81/481 (16%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ + + DIG I +V + E V G ++ + +ESDKAS+ + + G V+ V
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172
Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEE-------------ADSLDRKAAPGVSEVNTPD 553
GD G +L + V A A + AAP ++ P
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPA 232
Query: 554 TSDQPNETLHKDPNK------------IDTKELRGTGKQGRVLKEDIITYMNSPSDETNP 601
+ K + +D ++GTG +GR+L+ED+ ++ PS
Sbjct: 233 PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQA 292
Query: 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNS 661
A + + A P VD ++ +V++ D+
Sbjct: 293 A-----------------------AASAAGGAPGALPWPNVDFSKFGEVEEVDM------ 323
Query: 662 PSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQV 721
+ +R+ S + ++ T IP + ++ D T++ + Q
Sbjct: 324 ----------SRIRKIS--------GANLTRNWT---MIPHVTHFDKADITEMEAFRKQQ 362
Query: 722 SALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHG 781
+A EK +KLT + +KA++ + + P NAS+D E +++ NI +A+DT +G
Sbjct: 363 NAA-VEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNG 421
Query: 782 LVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
L+VP IK V++ + ++ EL + + +GK+ P ++QG ++S++G +GGT PI+
Sbjct: 422 LLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIV 481
Query: 842 VPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAAT-LWKSLEN 900
+V I+ K + P ++ + + +L ++ + DHRV+DGA AR T + +SL +
Sbjct: 482 NAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLAD 540
Query: 901 I 901
I
Sbjct: 541 I 541
Score = 96.5 bits (240), Expect = 2e-20
Identities = 43/136 (31%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
NI +A+DT +GL+VP IK V++ + ++ EL + + +GK+ P ++QG ++S++G
Sbjct: 411 NIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLG 470
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
+GGT PI+ +V I+ K + P ++ + + +L ++ + DHRV+DGA AR
Sbjct: 471 GIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-EFEPRLMLPLSLSYDHRVIDGADAAR 529
Query: 1028 AATLWKSLVENPALLL 1043
T + + LL
Sbjct: 530 FTTYICESLADIRRLL 545
Score = 69.5 bits (170), Expect = 4e-12
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 32/206 (15%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ + + DIG I +V + E V G ++ + +ESDKAS+ + + G V+ V
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVL--VKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172
Query: 247 YYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
GD G +L + V A A + + AA + QP EP
Sbjct: 173 KVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQS-------PAATQP------EP 219
Query: 307 NKVNREPIAHKPDVTPDLSRDSA-VSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKE 365
A P +++ A V H A P+VRR+ + + +D
Sbjct: 220 AAAPAAAKAQAPAPQQAGTQNPAKVDH---------------AAPAVRRLAREFGVDLSA 264
Query: 366 LRGTGKQGRVLKEDIITYMNSPIDET 391
++GTG +GR+L+ED+ ++ P
Sbjct: 265 VKGTGIKGRILREDVQRFVKEPSVRA 290
Score = 43.3 bits (102), Expect = 6e-04
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+ K+ DIG+ E + E G ++ + +ESDKAS+ + S G ++++
Sbjct: 1 TEIKVPDIGDN-EEGEVIEVLVKP--GDKVEAGQSLITLESDKASMEVPSSAAGIIKEIK 57
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEE--------------ADSLDRKAAP------GVS 287
GD VG + +EV A E A + +AAP GV
Sbjct: 58 VKVGDTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQ 117
Query: 288 EVNTPDTSDQPNETL 302
EV PD D T+
Sbjct: 118 EVTVPDIGDIEKVTV 132
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed.
Length = 306
Score = 142 bits (360), Expect = 2e-37
Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 57/341 (16%)
Query: 568 KIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSM 627
ID L+G+G+ G++L ED+ ++ S PA
Sbjct: 16 GIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPA------------------------- 50
Query: 628 TEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGYV 687
EA ++ S + + + + P RE V PIR
Sbjct: 51 -EAASVSSAQQAAK-------------------TAAPAAAPPKLEGKREK--VAPIR--- 85
Query: 688 KGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLC 746
K + ++MT + + + + L E+D T+L D++ V + +KLT++PF KA+ +
Sbjct: 86 KAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIA 145
Query: 747 MTEHPILNASIDPTQENILVNPDH-NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRI 805
+ E PI A D LV PD N+ IA+DT+ GL+VP IK+ KL +++I +E+ R+
Sbjct: 146 LKEFPIFAAKYDEATSE-LVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRL 204
Query: 806 QGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMR 865
+ E K+ P +++GG+ +++N G+VG P+I ++ I G I +
Sbjct: 205 AKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVK-NGQ 263
Query: 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPD 906
IVA ++++T AADHR +DGAT+ R A+ K L L P+
Sbjct: 264 IVAGKVMHLTVAADHRWIDGATIGRFASRVKEL---LEKPE 301
Score = 105 bits (263), Expect = 1e-24
Identities = 54/142 (38%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Query: 902 LVNPDH-NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
LV PD N+ IA+DT+ GL+VP IK+ KLS+++I +E+ R+ + E K+ P +++GG+
Sbjct: 163 LVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGS 222
Query: 961 ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
+++N G+VG P+I ++ I G I ++VA ++++T AADHR +
Sbjct: 223 FTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWI 281
Query: 1021 DGATVARAATLWKSLVENPALL 1042
DGAT+ R A+ K L+E P +L
Sbjct: 282 DGATIGRFASRVKELLEKPEIL 303
Score = 49.0 bits (117), Expect = 7e-06
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
KILATP R + K ID L+G+G+ G++L ED+ ++ S
Sbjct: 1 KILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSL 43
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex
dihydrolipoamide succinyltransferase (E2 component).
This model describes the TCA cycle 2-oxoglutarate system
E2 component, dihydrolipoamide succinyltransferase. It
is closely related to the pyruvate dehydrogenase E2
component, dihydrolipoamide acetyltransferase. The seed
for this model includes mitochondrial and Gram-negative
bacterial forms. Mycobacterial candidates are highly
derived, differ in having and extra copy of the
lipoyl-binding domain at the N-terminus. They score
below the trusted cutoff, but above the noise cutoff and
above all examples of dihydrolipoamide acetyltransferase
[Energy metabolism, TCA cycle].
Length = 403
Score = 141 bits (358), Expect = 3e-36
Identities = 108/466 (23%), Positives = 198/466 (42%), Gaps = 78/466 (16%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + ++ E I E + EW+ V G + + + E+E+DK + + S G ++++
Sbjct: 1 IEIKVPELAESITEGTVAEWHKKV--GDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58
Query: 508 YGEGDVALVGKPLLDIEVED-------EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNE 560
+ EGD G+ L +E + E+ ++ AA + + P
Sbjct: 59 FKEGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSL-SPAA 117
Query: 561 TLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYV 620
+ ID + GTG GRV KEDII +P+ PA A + +N
Sbjct: 118 RRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAKAPANF------- 170
Query: 621 KGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNV 680
R E V T+LR
Sbjct: 171 ---------------TRPEERVKMTRLR-------------------------------- 183
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
+ + + + EA N+ L EVD + + +++ + +++K +KL +M FF
Sbjct: 184 -------QRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFF 236
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+KA+ + P +NA ID I+ ++IS+A+ T GLVVP +++ +++ DI
Sbjct: 237 VKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
+E+ + + +GK+ D+ GGT +++N G G + PII P Q I+ I+ P
Sbjct: 295 KEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPV 354
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
+I + ++ + + DHR++DG A T +++ +L +P
Sbjct: 355 AVNG-QIEIRPMMYLALSYDHRLIDG---KEAVTFLVTIKELLEDP 396
Score = 72.8 bits (179), Expect = 3e-13
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+IS+A+ T GLVVP +++ +++S DI +E+ + + +GK+ D+ GGT +++N G
Sbjct: 266 DISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGG 325
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
G + PII P Q I+ I+ P ++ + ++ + + DHR++DG
Sbjct: 326 VFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-QIEIRPMMYLALSYDHRLIDGKEAVT 384
Query: 1028 AATLWKSLVENPALLL 1043
K L+E+P LL
Sbjct: 385 FLVTIKELLEDPRRLL 400
Score = 65.1 bits (159), Expect = 8e-11
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 48/200 (24%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ K+ ++ E I E + EW+ V G + + + E+E+DK + + S G ++++
Sbjct: 1 IEIKVPELAESITEGTVAEWHKKV--GDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
+ EGD G+ L + E D T + E KE
Sbjct: 59 FKEGDTVESGQVL--------AILEEGND-------------ATAAPPAKSGEE--KEET 95
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
A N+ +P+ RR+ K + ID +
Sbjct: 96 PAASAAAA-------------------PTAAANRPS----LSPAARRLAKEHGIDLSAVP 132
Query: 368 GTGKQGRVLKEDIITYMNSP 387
GTG GRV KEDII +P
Sbjct: 133 GTGVTGRVTKEDIIKKTEAP 152
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 133 bits (336), Expect = 5e-33
Identities = 113/487 (23%), Positives = 188/487 (38%), Gaps = 106/487 (21%)
Query: 459 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALV 516
+ N+ +W EG ++N DV+ E+E+DKA++ + +G + K+ EG DV V
Sbjct: 11 MTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP-V 67
Query: 517 GKPLL-------DIEVEDEGVAAEEADSLDRK----------AAPGVSEVNTPDTSDQ-- 557
KP+ D+ + E + S K +AP S + +
Sbjct: 68 NKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSS 127
Query: 558 PNETLHKDPNK----------------IDTKELRGTGKQGRVLKEDIITYMNSPSDETNP 601
P K+ ID + G+G GR++K+DI ++
Sbjct: 128 PAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESF---VPQSPAS 184
Query: 602 AHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNS 661
A+ + V T DV
Sbjct: 185 ANQQ----------------AAATTPATYPAAA------PVSTGSYEDV----------- 211
Query: 662 PSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQ 720
P+ K + K + E+ TIP ++ E + +L ++ +
Sbjct: 212 --------------------PLSNIRKIIAKRLLESKQTIPHYYVSIECNVDKLLALRKE 251
Query: 721 VSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKH 780
++A+ E KL+ F IKA +L + E P N+S I + +IS+A+ T
Sbjct: 252 LNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDN--FIRRYKNVDISVAVATPD 307
Query: 781 GLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPI 840
GL+ P +++ + L I+ E+ + + K+ P + QGGT ++SN+G G I
Sbjct: 308 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAI 367
Query: 841 IVPGQVCIVAFG--KIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
I P Q CI+A G + + D E I++VT + DHRV+DGA A KS
Sbjct: 368 INPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAV---GAEFLKSF 424
Query: 899 ENILVNP 905
+ L NP
Sbjct: 425 KKYLENP 431
Score = 90.6 bits (225), Expect = 5e-19
Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+IS+A+ T GL+ P +++ + L I+ E+ + + K+ P + QGGT ++SN+G
Sbjct: 298 DISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLG 357
Query: 968 NVGGTLVQPIIVPRQVCIVAFG--KIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
G II P Q CI+A G + + D E I++VT + DHRV+DGA
Sbjct: 358 MFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVG 417
Query: 1026 ARAATLWKSLVENPALLL 1043
A +K +ENP +L
Sbjct: 418 AEFLKSFKKYLENPIEML 435
Score = 72.9 bits (179), Expect = 3e-13
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 199 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALV 256
+ N+ +W EG ++N DV+ E+E+DKA++ + +G + K+ EG DV V
Sbjct: 11 MTTGNLAKWL--KKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP-V 67
Query: 257 GKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAH 316
KP+ + VE++ +A + K S P
Sbjct: 68 NKPIA-VLVEEKE-DVADAFK-NYKLESSASPAPKPSEIAPTAP--------------PS 110
Query: 317 KPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVL 376
P +P + S P++ ++ +I A+P +++ K ID + G+G GR++
Sbjct: 111 APKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIV 170
Query: 377 KEDIITY 383
K+DI ++
Sbjct: 171 KKDIESF 177
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 131 bits (330), Expect = 1e-31
Identities = 107/493 (21%), Positives = 186/493 (37%), Gaps = 99/493 (20%)
Query: 452 LADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG 511
+ ++GE + E + W V + ++E + EV +DK I S GT+ ++ E
Sbjct: 131 MPELGESVTEGTVTSWLKAVGDTVEVDE--PLLEVSTDKVDTEIPSPVAGTLLEIRAPED 188
Query: 512 DVALVGKPLLDIEVEDEGVAAEEA--DSLDRKAAPGVSEVNTPDTSDQPNETLHKDP--- 566
D VG L I D A E + + G PD + + P
Sbjct: 189 DTVEVGTVLAIIG--DANAAPAEPAEEEAPAPSEAGSEP--APDPAARAPHAAPDPPAPA 244
Query: 567 ----------------------------------NKIDTKELRGTGKQGRVLKEDIITYM 592
+D ++GTG GR+ K+D++
Sbjct: 245 PAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLA-- 302
Query: 593 NSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKK 652
+ A A+ + E DT +LR +
Sbjct: 303 -AAKAAEEARAAAAAPAAA----------------AAPAAPAAAAKPAEPDTAKLRGTTQ 345
Query: 653 EDIITYMNSPSDETNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDT 711
+ MN +R+ + E+ T L EVD
Sbjct: 346 K-----MN------------RIRQITA------------DKTIESLQTSAQLTQVHEVDM 376
Query: 712 TQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHN 771
T++ ++ + + EK + LT++PFF++A++ + HP +NAS + + + + +
Sbjct: 377 TRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYNAETKEVTYHDVEH 436
Query: 772 ISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGN 831
+ IA+DT GL+VP I + L L + + + + + + K+ P ++ GGT +++N+G+
Sbjct: 437 VGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSGGTFTITNIGS 496
Query: 832 VGGTLVQPIIVPGQVCIVAFGKIQLLPRF----DAEMRIVAKCILNVTWAADHRVVDGAT 887
G PI+ P Q I+ G I PR D I + + + DHR+VDGA
Sbjct: 497 GGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLTYDHRLVDGAD 556
Query: 888 VAR-AATLWKSLE 899
R T+ K LE
Sbjct: 557 AGRFLTTIKKRLE 569
Score = 80.8 bits (199), Expect = 2e-15
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
++ IA+DT GL+VP I + LSL + + + + + + K+ P ++ GGT +++N+G
Sbjct: 436 HVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDELSGGTFTITNIG 495
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRF--DAE----MRVVAKCILNVTWAADHRVVD 1021
+ G PI+ P Q I+ G I PR D + + + + C L +T+ DHR+VD
Sbjct: 496 SGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLTY--DHRLVD 553
Query: 1022 GATVARAATLWKSLVE 1037
GA R T K +E
Sbjct: 554 GADAGRFLTTIKKRLE 569
Score = 57.7 bits (139), Expect = 2e-08
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 23/193 (11%)
Query: 191 KLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 250
K+ ++GE + E + W V + ++E + EV +DK I S GT+ ++ E
Sbjct: 130 KMPELGESVTEGTVTSWLKAVGDTVEVDE--PLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187
Query: 251 GDVALVGKPLLDIEVEDEGVAAEEA--DSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNK 308
D VG L I D A E + + G PD + + P
Sbjct: 188 DDTVEVGTVLAIIG--DANAAPAEPAEEEAPAPSEAGSEP--APDPAARAPHAAPDPPAP 243
Query: 309 VNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELRG 368
P +S + ++ TP VR++ K +D ++G
Sbjct: 244 APAPAKTAAPAAAAPVSSGDSGPYV---------------TPLVRKLAKDKGVDLSTVKG 288
Query: 369 TGKQGRVLKEDII 381
TG GR+ K+D++
Sbjct: 289 TGVGGRIRKQDVL 301
Score = 30.8 bits (69), Expect = 4.3
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
K+ +GE + E + W V + +E + EV +DK I S G + ++
Sbjct: 3 ESVKMPALGESVTEGTVTSWLKAVGDTVEADE--PLLEVSTDKVDTEIPSPAAGVLLEIR 60
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAP 284
E D VG L I E + + + +AAP
Sbjct: 61 APEDDTVEVGGVLAIIGEPGEAGSEPAPAAPEPEAAP 97
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 108 bits (271), Expect = 8e-25
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 12/211 (5%)
Query: 698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASI 757
NT L E D + L +++ + +Q+K +KL +M F+KA ++ + + PI+NA I
Sbjct: 210 NTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYI 269
Query: 758 DPTQENILVNPDH-NISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLP 816
D + +V ++ +IS+A+ T GLVVP I++ +I +EL + + K+
Sbjct: 270 D---GDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTL 326
Query: 817 RDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP--RFDAEMRIVAKCILNV 874
D+ GGT ++SN G G + PII P Q I+ I+ P + IV + I+ +
Sbjct: 327 EDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN---EIVIRPIMYL 383
Query: 875 TWAADHRVVDGATVARAATLWKSLENILVNP 905
DHR++DG A T K +++++ +P
Sbjct: 384 ALTYDHRLIDG---RDAVTFLKKIKDLIEDP 411
Score = 79.3 bits (196), Expect = 2e-15
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 13/142 (9%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+IS+A+ T GLVVP I++ S +I +EL + + K+ D+ GGT ++SN G
Sbjct: 281 DISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGG 340
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLP--RFDAEMRVVAKCILNVTWAADHRVVDGATV 1025
G + PII P Q I+ I+ P + +V + I+ + DHR++DG
Sbjct: 341 VFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN---EIVIRPIMYLALTYDHRLIDG--- 394
Query: 1026 ARAATLW----KSLVENPALLL 1043
R A + K L+E+PA +L
Sbjct: 395 -RDAVTFLKKIKDLIEDPARML 415
Score = 68.9 bits (169), Expect = 4e-12
Identities = 39/186 (20%), Positives = 63/186 (33%), Gaps = 16/186 (8%)
Query: 139 TNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLIQFKLADIGEG 198
NK L + + R+FS P H + + K+ +G+
Sbjct: 9 LNKPL-LSSVKGMFRRFSLRKL---------QPACSAHFSKSY--FSIKV-IKVPTMGDS 55
Query: 199 IREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGK 258
I E + EW V G + E +V+C +E+DK SV I + G + K++ EGD VG
Sbjct: 56 ISEGTVVEWKKKV--GDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGA 113
Query: 259 PLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKP 318
PL +I+ A + A + + P +P
Sbjct: 114 PLSEID-TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPA 172
Query: 319 DVTPDL 324
Sbjct: 173 PAAKPP 178
Score = 67.8 bits (166), Expect = 1e-11
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 6/137 (4%)
Query: 430 PPLQCHHHLHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESD 489
P H + + + +G+ I E + EW V G + E +V+C +E+D
Sbjct: 30 QPACSAHFSKSY--FSIKV-IKVPTMGDSISEGTVVEWKKKV--GDYVKEDEVICIIETD 84
Query: 490 KASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEV 549
K SV I + G + K++ EGD VG PL +I+ A + A +
Sbjct: 85 KVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID-TGGAPPAAAPAAAAAAKAEKTTPE 143
Query: 550 NTPDTSDQPNETLHKDP 566
+ P P
Sbjct: 144 KPKAAAPTPEPPAASKP 160
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 109 bits (273), Expect = 1e-24
Identities = 114/469 (24%), Positives = 189/469 (40%), Gaps = 119/469 (25%)
Query: 461 EVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520
E NI W EG +++ +V+CEVE+DKA+V + +G + K+ G+G + +
Sbjct: 126 EGNIARWLKK--EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEV 183
Query: 521 LDIEVEDEG-------------VAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP- 566
+ I VE+E A + P EV P +S +P + P
Sbjct: 184 IAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPP 243
Query: 567 ------------------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVR 608
N + ++GTG GR++K DI Y+ S
Sbjct: 244 SSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLAS-------------- 289
Query: 609 EASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDETNP 668
KG + + P+L T+ + TQ+R V
Sbjct: 290 ----------GGKGATAPPSTDSKAPALDYTD-IPNTQIRKV------------------ 320
Query: 669 AHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEK 728
TA + + TIP LT + +L +++Q+++L +
Sbjct: 321 --TAS------------------RLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEAS 360
Query: 729 FRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIK 788
K++ IKA +L + + P N+S T + I + NI++A+ T++GL VP +K
Sbjct: 361 GGKKISVNDLVIKAAALALRKVPQCNSSW--TDDYIRQYHNVNINVAVQTENGLYVPVVK 418
Query: 789 SVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQ--PIIVPGQV 846
+K L I E+ ++ + E + P D +GGT ++SN+G G + Q II P Q
Sbjct: 419 DADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFG-IKQFCAIINPPQS 477
Query: 847 CIVAFGKIQLLPRFDAEMRIV---------AKCILNVTWAADHRVVDGA 886
I+A G AE R++ ++VT + DHRV+DGA
Sbjct: 478 AILAVGS--------AEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGA 518
Score = 79.1 bits (195), Expect = 4e-15
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
NI++A+ T++GL VP +K +K L I E+ ++ + E + P D +GGT ++SN+G
Sbjct: 401 NINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLG 460
Query: 968 NVGGTLVQ--PIIVPRQVCIVAFGKIQLLPRFDAEMRVV---------AKCILNVTWAAD 1016
G + Q II P Q I+A G AE RV+ ++VT + D
Sbjct: 461 GPFG-IKQFCAIINPPQSAILAVGS--------AEKRVIPGSGPDQYNFASFMSVTLSCD 511
Query: 1017 HRVVDGATVARAATLWKSLVENPALLL 1043
HRV+DGA A +K +ENP +L
Sbjct: 512 HRVIDGAIGAEWLKAFKGYIENPESML 538
Score = 68.0 bits (166), Expect = 2e-11
Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 68/328 (20%)
Query: 73 LDTILGEFKADVVGWYS------FTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRI 126
+ +L A +V ++S + D+++ L ++
Sbjct: 16 VSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYPPLERRSQP-------------KV 62
Query: 127 STNVVFEENF--TYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLST--PPLQCHHHLHTSC 182
S+ +F N T TGS SS +Q G S+ PP Q
Sbjct: 63 SSLGLFGSNISRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQ--------- 113
Query: 183 IRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGT 242
+ + + + E NI W EG +++ +V+CEVE+DKA+V + +G
Sbjct: 114 ------EIGMPSLSPTMTEGNIARWLKK--EGDKVSPGEVLCEVETDKATVEMECMEEGY 165
Query: 243 VRKVYYGEGDVALVGKPLLDIEVEDEGVAAE----EADSLDRKAAPGVSEVNTPDTSDQP 298
+ K+ G+G + ++ I VE+E + + S AAP P P
Sbjct: 166 LAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPP-----P 220
Query: 299 NETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKH 358
E ++P EP A KP P S D +I A+P R++ +
Sbjct: 221 KEEEVEKPASSP-EPKASKPSAPP-SSGD-----------------RIFASPLARKLAED 261
Query: 359 YEIDTKELRGTGKQGRVLKEDIITYMNS 386
+ ++GTG GR++K DI Y+ S
Sbjct: 262 NNVPLSSIKGTGPDGRIVKADIEDYLAS 289
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 96.8 bits (242), Expect = 4e-21
Identities = 104/456 (22%), Positives = 182/456 (39%), Gaps = 105/456 (23%)
Query: 454 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 513
+ E + E I W+ G + +V+ E+E+DK + + + G + ++ EGD
Sbjct: 9 TLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT 66
Query: 514 ALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDPNKIDTKE 573
VG+ L I+ AA A AA + P +
Sbjct: 67 VTVGQVLGRIDEGAAAGAAAAA------AAAAAAAAAAPAQAQAA--------------- 105
Query: 574 LRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMTEANTI 633
+ ++++N A + R K E
Sbjct: 106 --------------------AAAEQSNDALSPAAR----------------KLAAENGLD 129
Query: 634 PSLRLTEEVDTTQLRD-VKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRG--YVKGM 690
S V T V KED++ + + + A A + R V
Sbjct: 130 AS-----AVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVP-- 182
Query: 691 FKSMTEA-NTIPSLRLTE------------EVDTTQLRDVKNQVSALYQEKFR----LKL 733
MT TI + RL E EVD T + D++ Q Y++ F +KL
Sbjct: 183 ---MTRLRKTI-AERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ----YKDAFEKKHGVKL 234
Query: 734 TYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKL 793
+M FF+KA+ + +P +NASID +I+ + ++I IA+ T GLVVP ++ ++L
Sbjct: 235 GFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVPVLRDADQL 292
Query: 794 CLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGK 853
+I +++ + + +GK+ ++ GGT +++N G G + PII P Q I+ K
Sbjct: 293 SFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHK 352
Query: 854 IQLLPRFDAEM----RIVAKCILNVTWAADHRVVDG 885
I+ P + +IV + ++ + + DHR++DG
Sbjct: 353 IKERP-----VAVNGQIVIRPMMYLALSYDHRIIDG 383
Score = 66.0 bits (162), Expect = 4e-11
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 19/145 (13%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+I IA+ T GLVVP ++ ++LS +I +++ + + +GK+ ++ GGT +++N G
Sbjct: 270 DIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGG 329
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILN-----VTWAADHRVVDG 1022
G + PII P Q I+ KI+ P + V I+ + + DHR++DG
Sbjct: 330 VFGSLMSTPIINPPQSAILGMHKIKERP-----V-AVNGQIVIRPMMYLALSYDHRIIDG 383
Query: 1023 ATVARAATLW----KSLVENPALLL 1043
+ A + K L+E+P LL
Sbjct: 384 ----KEAVGFLVTIKELLEDPERLL 404
Score = 60.6 bits (148), Expect = 2e-09
Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 48/200 (24%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
++ K+ + E + E I W+ G + +V+ E+E+DK + + + G + ++
Sbjct: 3 VEIKVPTLPESVTEATIATWH--KKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
EGD VG+ L I+ AA A + AA ++ ++Q N+ L
Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDAL----- 115
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
+P+ R++ +D ++
Sbjct: 116 -----------------------------------------SPAARKLAAENGLDASAVK 134
Query: 368 GTGKQGRVLKEDIITYMNSP 387
GTGK GRV KED++ + +
Sbjct: 135 GTGKGGRVTKEDVLAALAAA 154
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl
acyltransferase component (E2) of 2-oxo acid
dehydrogenases. 2-oxo acid dehydrogenase multienzyme
complexes, like pyruvate dehydrogenase (PDH),
2-oxoglutarate dehydrogenase (OGDH) and branched-chain
2-oxo acid dehydrogenase (BCDH), contain at least three
different enzymes, 2-oxo acid dehydrogenase (E1),
dihydrolipoyl acyltransferase (E2) and dihydrolipoamide
dehydrogenase (E3) and play a key role in redox
regulation. E2, the central component of the complex,
catalyzes the transfer of the acyl group of CoA from E1
to E3 via reductive acetylation of a lipoyl group
covalently attached to a lysine residue.
Length = 74
Score = 86.7 bits (216), Expect = 1e-20
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+ K+ D+GE + E I EW V EG + E DV+ EVE+DKA+V + + G + K+
Sbjct: 1 TEIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58
Query: 248 YGEGDVALVGKPLLDI 263
EGD VG+ + I
Sbjct: 59 VEEGDTVPVGQVIAVI 74
Score = 84.8 bits (211), Expect = 4e-20
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+ + D+GE + E I EW V EG + E DV+ EVE+DKA+V + + G + K+
Sbjct: 1 TEIKMPDLGESMTEGTIVEWL--VKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58
Query: 508 YGEGDVALVGKPLLDI 523
EGD VG+ + I
Sbjct: 59 VEEGDTVPVGQVIAVI 74
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase;
Provisional.
Length = 347
Score = 91.5 bits (227), Expect = 1e-19
Identities = 83/352 (23%), Positives = 153/352 (43%), Gaps = 45/352 (12%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREASNVISIRGYVKGMFKSMT 628
I+ ++ G+G GRV KED+ TY + +NV+ I + K +
Sbjct: 21 INLYDVSGSGANGRVHKEDVETY-----------------KDTNVVRI----SPLAKRIA 59
Query: 629 EANTIPSLRLTEEVDTTQLR-DVKKEDIITYMNSPSDETNPAHTAHVREASNV------- 680
+ I +E+ T R + K+D++ + + + A + + V
Sbjct: 60 LEHNIA----WQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPY 115
Query: 681 -----IPIRGYVKGMFKSMTEAN-TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLT 734
IP+ K + + M E+ T P+ L EVD T++ ++ +V E K T
Sbjct: 116 GEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTT 175
Query: 735 YMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLC 794
A+ + +HP +NAS+ + I+ + N+++A+ +GL+ P + + K+
Sbjct: 176 VTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMS 235
Query: 795 LLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII-VPGQVCIVAFGK 853
L ++ + G + +GK+ P ++Q T ++SN+G G PII P +
Sbjct: 236 LSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSST 295
Query: 854 IQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
I+ + E IV + I+++ DHRVVDG A K L+ ++ P
Sbjct: 296 IEKPVVVNGE--IVIRPIMSLGLTIDHRVVDGMA---GAKFMKDLKELIETP 342
Score = 64.5 bits (157), Expect = 8e-11
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
N+++A+ +GL+ P + + K+SL ++ + G + +GK+ P ++Q T ++SN+G
Sbjct: 212 NLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLG 271
Query: 968 NVGGTLVQPII-VPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
G PII P + I+ + E+ + + I+++ DHRVVDG A
Sbjct: 272 MFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVI--RPIMSLGLTIDHRVVDGMAGA 329
Query: 1027 RAATLWKSLVENPALLL 1043
+ K L+E P +L
Sbjct: 330 KFMKDLKELIETPISML 346
Score = 38.7 bits (90), Expect = 0.012
Identities = 14/65 (21%), Positives = 36/65 (55%)
Query: 341 KNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVR 400
K+ + +P +R+ + I +E++GTG +G+++K+D++ + I+ ++ A +
Sbjct: 44 KDTNVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIE 103
Query: 401 EASNV 405
+ V
Sbjct: 104 KVEEV 108
Score = 36.0 bits (83), Expect = 0.084
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITY 383
K+ ATP+ R++ I+ ++ G+G GRV KED+ TY
Sbjct: 5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETY 43
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 89.4 bits (221), Expect = 2e-18
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 3/188 (1%)
Query: 698 NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASI 757
NT L EVD T L +++Q + EK +KL M FIKA + P++NA I
Sbjct: 255 NTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVI 314
Query: 758 DPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPR 817
D ++I+ +ISIA+ T GLVVP I+ +K+ +I + + + ++EG +
Sbjct: 315 D--GDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISID 372
Query: 818 DIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWA 877
++ GG+ ++SN G G + PII P Q I+ I P +V + ++ V
Sbjct: 373 EMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMV-VGGSVVPRPMMYVALT 431
Query: 878 ADHRVVDG 885
DHR++DG
Sbjct: 432 YDHRLIDG 439
Score = 66.7 bits (162), Expect = 3e-11
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
+ISIA+ T GLVVP I+ +K++ +I + + + ++EG + ++ GG+ ++SN G
Sbjct: 326 DISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGG 385
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
G + PII P Q I+ I P VV + ++ V DHR++DG
Sbjct: 386 VYGSLISTPIINPPQSAILGMHSIVSRPMV-VGGSVVPRPMMYVALTYDHRLIDGREAVY 444
Query: 1028 AATLWKSLVENPALLL 1043
K +VE+P LL
Sbjct: 445 FLRRVKDVVEDPQRLL 460
Score = 39.7 bits (92), Expect = 0.007
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 214 GARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAE 273
G R+ + + ++E+DK ++ I S G +++ EGD G + I ++ +
Sbjct: 116 GERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSEDAAS-- 173
Query: 274 EADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKP 318
+ P T D P ++P KV P+A KP
Sbjct: 174 -------QVTPSQKIPETTDPKPSPPAEDKQKP-KVESAPVAEKP 210
Score = 32.0 bits (72), Expect = 2.0
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 474 GARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAE 533
G R+ + + ++E+DK ++ I S G +++ EGD G + I ++ +
Sbjct: 116 GERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSEDAAS-- 173
Query: 534 EADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP 566
+ P T D P + P
Sbjct: 174 -------QVTPSQKIPETTDPKPSPPAEDKQKP 199
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. This family
covers two Prosite entries, the conserved lysine residue
binds biotin in one group and lipoic acid in the other.
Note that the HMM does not currently recognise the
Glycine cleavage system H proteins.
Length = 73
Score = 68.0 bits (167), Expect = 3e-14
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+ K IGE ++E EW V G ++ V+CEVE+ K + I + G V+++
Sbjct: 1 TEIKSPMIGESVKEGTA-EWL--VKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57
Query: 248 YGEGDVALVGKPLLDI 263
EGD VG PL I
Sbjct: 58 VKEGDTVEVGDPLAKI 73
Score = 66.5 bits (163), Expect = 1e-13
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+ IGE ++E EW V G ++ V+CEVE+ K + I + G V+++
Sbjct: 1 TEIKSPMIGESVKEGTA-EWL--VKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57
Query: 508 YGEGDVALVGKPLLDI 523
EGD VG PL I
Sbjct: 58 VKEGDTVEVGDPLAKI 73
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 63.4 bits (155), Expect = 6e-10
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 40/171 (23%)
Query: 740 IKALSLCMTEHPILNAS---ID--PTQENILVNPDH-NISIAIDT--KHG---LVVPNIK 788
++AL P +N +D PT LV P H N+ +AID K G LVVP IK
Sbjct: 181 VQALK----AFPNMNRHYAEVDGKPT----LVTPAHVNLGLAIDLPKKDGSRQLVVPAIK 232
Query: 789 SVNKLCLL-------DITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
+ DI R + +GK+ D QG TIS++N G +G P +
Sbjct: 233 GAETMDFAQFWAAYEDIVRR-------ARDGKLTADDFQGTTISLTNPGGIGTVHSVPRL 285
Query: 842 VPGQVCIVAFGKIQLLPRFDA--EMRI----VAKCILNVTWAADHRVVDGA 886
+ GQ I+ G ++ F E R+ ++K ++ +T DHR++ GA
Sbjct: 286 MKGQGAIIGVGAMEYPAEFQGASEERLAELGISK-VMTLTSTYDHRIIQGA 335
Score = 54.9 bits (133), Expect = 2e-07
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 902 LVNPDH-NISIAIDT--KHG---LVVPNIKSVNKLSLL-------DITRELLRIQGCSHE 948
LV P H N+ +AID K G LVVP IK + DI R + +
Sbjct: 203 LVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRR-------ARD 255
Query: 949 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-------AEM 1001
GK+ D QG TIS++N G +G P ++ Q I+ G ++ F AE+
Sbjct: 256 GKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAEL 315
Query: 1002 RVVAKCILNVTWAADHRVVDGA 1023
++K ++ +T DHR++ GA
Sbjct: 316 -GISK-VMTLTSTYDHRIIQGA 335
>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain. This family represents a
small domain of the E2 subunit of 2-oxo-acid
dehydrogenases responsible for the binding of the E3
subunit.
Length = 39
Score = 48.2 bits (116), Expect = 1e-07
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDI 380
++ A+P+ R++ ID +++GTG GR+ KED+
Sbjct: 2 RVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDV 37
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 567 NKIDTKELRGTGKQGRVLKEDI 588
ID +++GTG GR+ KED+
Sbjct: 16 KGIDLSQVKGTGPGGRITKEDV 37
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 47.2 bits (113), Expect = 3e-05
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGV 270
V EG + + D + +VE+DK + + + GT+R+ EG+ VG L V D V
Sbjct: 24 VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALL--AVVADAEV 81
Query: 271 AAEEAD 276
+ E D
Sbjct: 82 SDAEID 87
Score = 47.2 bits (113), Expect = 3e-05
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGV 530
V EG + + D + +VE+DK + + + GT+R+ EG+ VG L V D V
Sbjct: 24 VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALL--AVVADAEV 81
Query: 531 AAEEAD 536
+ E D
Sbjct: 82 SDAEID 87
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are
present in biotin-dependent carboxylases/decarboxylases,
the dihydrolipoyl acyltransferase component (E2) of
2-oxo acid dehydrogenases, and the H-protein of the
glycine cleavage system (GCS). These domains transport
CO2, acyl, or methylamine, respectively, between
components of the complex/protein via a biotinyl or
lipoyl group, which is covalently attached to a highly
conserved lysine residue.
Length = 73
Score = 40.1 bits (94), Expect = 2e-04
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
G ++ + DV+ E+E+ KA+ + + GTV+KV EG PL+ I
Sbjct: 21 KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73
Score = 40.1 bits (94), Expect = 2e-04
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
G ++ + DV+ E+E+ KA+ + + GTV+KV EG PL+ I
Sbjct: 21 KKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].
Length = 140
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V G + + +E+ K I + G V+++ GD G PL IE
Sbjct: 86 VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V G + + +E+ K I + G V+++ GD G PL IE
Sbjct: 86 VEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl
carrier protein (BCCP) domain is present in all
biotin-dependent enzymes, such as acetyl-CoA
carboxylase, pyruvate carboxylase, propionyl-CoA
carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA
carboxylase, oxaloacetate decarboxylase,
methylmalonyl-CoA decarboxylase, transcarboxylase and
urea amidolyase. This domain functions in transferring
CO2 from one subsite to another, allowing carboxylation,
decarboxylation, or transcarboxylation. During this
process, biotin is covalently attached to a specific
lysine.
Length = 67
Score = 39.3 bits (93), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
V EG ++ + +E+ K +T+ G V+++ EGD G+ L+ I
Sbjct: 15 VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
Score = 39.3 bits (93), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
V EG ++ + +E+ K +T+ G V+++ EGD G+ L+ I
Sbjct: 15 VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase. Members of this family are
ATP-dependent urea carboxylase, including characterized
members from Oleomonas sagaranensis (alpha class
Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the yeast
enzyme is not included in this model and is represented
by an adjacent gene in Oleomonas sagaranensis. The fusion
of urea carboxylase and allophanate hydrolase is
designated urea amidolyase. The enzyme from Oleomonas
sagaranensis was shown to be highly active on acetamide
and formamide as well as urea [Central intermediary
metabolism, Nitrogen metabolism].
Length = 1201
Score = 43.5 bits (103), Expect = 7e-04
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
W V G R+ + +E+ K + +++ G V K+ GD+ G + +E
Sbjct: 1144 WKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
Score = 43.5 bits (103), Expect = 7e-04
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 467 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
W V G R+ + +E+ K + +++ G V K+ GD+ G + +E
Sbjct: 1144 WKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism].
Length = 645
Score = 41.9 bits (99), Expect = 0.002
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V EG ++ D++ +E+ K T+ + G V K+ EGD VG L++ E
Sbjct: 590 AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644
Score = 41.9 bits (99), Expect = 0.002
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V EG ++ D++ +E+ K T+ + G V K+ EGD VG L++ E
Sbjct: 590 AVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 40.2 bits (95), Expect = 0.005
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V EG ++ D V +E+ K I + GTV+++ EGD G L++IE
Sbjct: 537 KVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591
Score = 40.2 bits (95), Expect = 0.005
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V EG ++ D V +E+ K I + GTV+++ EGD G L++IE
Sbjct: 537 KVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591
>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional.
Length = 593
Score = 40.3 bits (95), Expect = 0.005
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 262
NI + VTEG + E DV+ +E+ K I + GTVR + EGD VG LL
Sbjct: 534 NI--FKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLT 591
Query: 263 I 263
+
Sbjct: 592 L 592
Score = 40.3 bits (95), Expect = 0.005
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 522
NI + VTEG + E DV+ +E+ K I + GTVR + EGD VG LL
Sbjct: 534 NI--FKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLT 591
Query: 523 I 523
+
Sbjct: 592 L 592
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 38.0 bits (89), Expect = 0.023
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDE 268
EG ++ DV+ E+E+DKA++ + + +GT+ K+ EG V V P+ + E E
Sbjct: 24 KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVK-VNTPIAVLLEEGE 82
Query: 269 GVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPNKVNREPIAHKPDVTPD 323
+ D AAP + K+ P A +V D
Sbjct: 83 SAS-------DAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAAD 130
Score = 34.5 bits (80), Expect = 0.31
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDE 528
EG ++ DV+ E+E+DKA++ + + +GT+ K+ EG V V P+ + E E
Sbjct: 24 KKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVK-VNTPIAVLLEEGE 82
Query: 529 GVAAEEADSLDRKAAP 544
+ A A
Sbjct: 83 SASDAGAAPAAAAEAA 98
>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier
protein subunit; Validated.
Length = 70
Score = 34.4 bits (79), Expect = 0.023
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
W V G + E V +ES K + I + GTV+K+ EGD G LL+IE
Sbjct: 13 WKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70
Score = 34.4 bits (79), Expect = 0.023
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 467 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
W V G + E V +ES K + I + GTV+K+ EGD G LL+IE
Sbjct: 13 WKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 36.7 bits (85), Expect = 0.059
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Query: 178 LHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDV-VCEVESDKASVT-I 235
L T F+LA + E +E+ E ARI E + E+E+ T I
Sbjct: 207 LETVLQSLSQADFQLAGVAE--KELETVE--------ARIKEARYEIEELENKLNLNTRI 256
Query: 236 TSRYKGTVRKVYYGEGDVALVGKPLLDIEVED------EGVA---AEEADSLDRKAAPGV 286
S++ G V ++ Y G + G PL +EVED EGVA E +K PG+
Sbjct: 257 VSQHSGRVIELNYTPGQLVAAGAPLASLEVEDQTDEGLEGVAYFPVAEG----KKIRPGM 312
Query: 287 SEVNTPDT 294
S TP T
Sbjct: 313 SVQITPST 320
Score = 36.4 bits (84), Expect = 0.069
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 25/128 (19%)
Query: 438 LHTSCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDV-VCEVESDKASVT-I 495
L T F LA + E +E+ E ARI E + E+E+ T I
Sbjct: 207 LETVLQSLSQADFQLAGVAE--KELETVE--------ARIKEARYEIEELENKLNLNTRI 256
Query: 496 TSRYKGTVRKVYYGEGDVALVGKPLLDIEVED------EGVA---AEEADSLDRKAAPGV 546
S++ G V ++ Y G + G PL +EVED EGVA E +K PG+
Sbjct: 257 VSQHSGRVIELNYTPGQLVAAGAPLASLEVEDQTDEGLEGVAYFPVAEG----KKIRPGM 312
Query: 547 SEVNTPDT 554
S TP T
Sbjct: 313 SVQITPST 320
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 34.4 bits (79), Expect = 0.14
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V G ++ + +VC VE+ K I + G V ++ G G+PL+ IE
Sbjct: 103 VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156
Score = 34.4 bits (79), Expect = 0.14
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V G ++ + +VC VE+ K I + G V ++ G G+PL+ IE
Sbjct: 103 VEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156
>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit. This
model describes the bacterial oxaloacetate decarboxylase
alpha subunit and its equivalents in archaea. The
oxaloacetate decarboxylase Na+ pump is the paradigm of
the family of Na+ transport decarboxylases that present
in bacteria and archaea. It a multi subunit enzyme
consisting of a peripheral alpha-subunit and integral
membrane subunits beta and gamma. The energy released by
the decarboxylation reaction of oxaloacetate is coupled
to Na+ ion pumping across the membrane [Transport and
binding proteins, Cations and iron carrying compounds,
Energy metabolism, Other].
Length = 582
Score = 33.6 bits (77), Expect = 0.61
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 260
V+EG + E +V+ +E+ K I + GTVR++ GD VG+ L
Sbjct: 529 VKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582
Score = 33.6 bits (77), Expect = 0.61
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 467 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPL 520
V+EG + E +V+ +E+ K I + GTVR++ GD VG+ L
Sbjct: 529 VKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582
>gnl|CDD|180306 PRK05889, PRK05889, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Provisional.
Length = 71
Score = 30.2 bits (68), Expect = 0.87
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVG 257
V EG +I + D + +ES K + + + GTV KV GDV G
Sbjct: 18 VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAG 64
Score = 30.2 bits (68), Expect = 0.87
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVG 517
V EG +I + D + +ES K + + + GTV KV GDV G
Sbjct: 18 VNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAG 64
>gnl|CDD|233055 TIGR00617, rpa1, replication factor-a protein 1 (rpa1). All
proteins in this family for which functions are known
are part of a multiprotein complex made up of homologs
of RPA1, RPA2 and RPA3 that bind ssDNA and function in
the recognition of DNA damage for nucleotide excision
repairThis family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford University)
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 608
Score = 30.9 bits (70), Expect = 5.0
Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 28/188 (14%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ LA +N G + EG I K + Y+ V K
Sbjct: 54 YSKAMLATQ------LNPLVREGELQEGTIIRLTKFEVNTIG-KDGRKVLIVYELEVVKP 106
Query: 247 YYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
D +G P V E + + P + N P+ NE
Sbjct: 107 ELKVRDK--IGNP-----VTYEKYLDSWHEEQVLASKPATNPANPPNAKAPKNE----VA 155
Query: 307 NKVNREPIAHKPDVTPDLSRDSAVSHLNQPVN-LN--KNKWKILATPSVRRMIKHYEIDT 363
+ N + +S + P+ L+ +NKW I A + + I+ +
Sbjct: 156 SYNNAANPERG---NAPPAPNSGSTRRVMPIASLSPYQNKWTIKARVTNKSEIRTW---- 208
Query: 364 KELRGTGK 371
RG GK
Sbjct: 209 SNARGEGK 216
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 30.2 bits (68), Expect = 7.8
Identities = 35/156 (22%), Positives = 54/156 (34%), Gaps = 15/156 (9%)
Query: 189 QFKLADIGEGIREVNIK-EWNGNVTEGARIN----EFDVVCEV-ESDKASVTITSRYKGT 242
F+LAD I V E G + N + + E+ D SVT+ S +
Sbjct: 612 TFRLADGLTTIESVYNPVEAGGTLEVAGSTNRKPDDNTITVELLNEDDTSVTLESTDE-- 669
Query: 243 VRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPD--TSDQPNE 300
+ V L D+E + V A++ D+ DR V E PD TS+ P
Sbjct: 670 -----WNSDGQWSVEVDLSDVETGNYTVEADDGDNTDRVNVEVVEETERPDTTTSEDPTT 724
Query: 301 TLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQP 336
T +P T + + + + P
Sbjct: 725 TTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 29.3 bits (66), Expect = 8.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 798 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNV 832
I RE+L H+ V+ RDI+ I ++N GNV
Sbjct: 106 IIREVLVALKYIHKVGVIHRDIKAANILVTNTGNV 140
Score = 29.3 bits (66), Expect = 8.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 935 ITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNV 969
I RE+L H+ V+ RDI+ I ++N GNV
Sbjct: 106 IIREVLVALKYIHKVGVIHRDIKAANILVTNTGNV 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,469,571
Number of extensions: 5211628
Number of successful extensions: 4160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4062
Number of HSP's successfully gapped: 126
Length of query: 1045
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 938
Effective length of database: 6,191,724
Effective search space: 5807837112
Effective search space used: 5807837112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)