RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6394
(1045 letters)
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 259 bits (665), Expect = 1e-79
Identities = 96/223 (43%), Positives = 148/223 (66%), Gaps = 2/223 (0%)
Query: 680 VIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
P++G+ K M K+M+ A IP +EVD T+L ++ ++ + + +KL++MPFF
Sbjct: 33 TEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFAR-GIKLSFMPFF 91
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+KA SL + + PILNAS+D +NI HNI IA+DT+ GL+VPN+K+V + +I
Sbjct: 92 LKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIA 151
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
EL R+Q G++ D+ GGT ++SN+G++GGT +P+I+P +V I A G I+ LPR
Sbjct: 152 TELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPR 211
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
F+ + + I+NV+W+ADHR++DGATV+R + LWKS LEN
Sbjct: 212 FNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENP 254
Score = 190 bits (484), Expect = 1e-54
Identities = 69/145 (47%), Positives = 102/145 (70%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
+NI HNI IA+DT+ GL+VPN+K+V S+ +I EL R+Q G++ D+ G
Sbjct: 114 QNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIG 173
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
GT ++SN+G++GGT +P+I+P +V I A G I+ LPRF+ + V I+NV+W+ADHR
Sbjct: 174 GTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHR 233
Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
++DGATV+R + LWKS +ENPA +L
Sbjct: 234 IIDGATVSRFSNLWKSYLENPAFML 258
Score = 37.6 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 613 VISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKE 653
++G+ K M K+M+ A IP +EVD T+L +++E
Sbjct: 33 TEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREE 73
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 257 bits (660), Expect = 8e-77
Identities = 127/477 (26%), Positives = 203/477 (42%), Gaps = 81/477 (16%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+F L DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 508 YGEGDVALVGKPLLDIEVEDEGVAAEEAD--------------SLDRKAAPGVSEVNTPD 553
EG VA VG+ L+ ++ + S + K +
Sbjct: 61 VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAE 120
Query: 554 TSDQPNETLHKDP--------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTA 605
PN + P +D + ++GTGK GRVLKEDI ++ + A
Sbjct: 121 AEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEE 180
Query: 606 HVREASNVISIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDE 665
A+ + T + +R I
Sbjct: 181 KAAPAA----------------AKPATTEGEFPETREKMSGIR-----RAI--------- 210
Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALY 725
+ + + P M EA D T+L + + A+
Sbjct: 211 -----AKAMVHSKHTAP-------HVTLMDEA------------DVTKLVAHRKKFKAIA 246
Query: 726 QEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVP 785
EK +KLT++P+ +KAL + E+P+LN SID E I+ +NI IA DT GL+VP
Sbjct: 247 AEK-GIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVP 305
Query: 786 NIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQ 845
IK ++ + + +E+ + + +GK+ P +++G + +++N+G+ GG P+I +
Sbjct: 306 VIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPE 365
Query: 846 VCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
V I+ G+I P IVA +L ++ + DHR++DGAT +A K L +
Sbjct: 366 VAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDP 421
Score = 139 bits (352), Expect = 2e-35
Identities = 47/145 (32%), Positives = 83/145 (57%), Gaps = 1/145 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
E I+ +NI IA DT GL+VP IK ++ + + +E+ + + +GK+ P +++G
Sbjct: 282 EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 341
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
+ +++N+G+ GG P+I +V I+ G+I P +VA +L ++ + DHR
Sbjct: 342 ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-EIVAAPMLALSLSFDHR 400
Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
++DGAT +A K L+ +P LLL
Sbjct: 401 MIDGATAQKALNHIKRLLSDPELLL 425
Score = 121 bits (305), Expect = 3e-29
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+FKL DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 3 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 248 YGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEPN 307
EG VA VG+ L+ ++ + + +E + +
Sbjct: 61 VPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDA--------- 111
Query: 308 KVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKELR 367
+ P + + V +A PSVR+ + +D + ++
Sbjct: 112 -----VAPNAPAAEAEAGPNRRV----------------IAMPSVRKYAREKGVDIRLVQ 150
Query: 368 GTGKQGRVLKEDIITYMNSP 387
GTGK GRVLKEDI ++
Sbjct: 151 GTGKNGRVLKEDIDAFLAGG 170
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 184 bits (469), Expect = 6e-53
Identities = 57/224 (25%), Positives = 114/224 (50%), Gaps = 4/224 (1%)
Query: 680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPF 738
+P+ ++ ++ + +P + E D T+L + A+ ++ +KLT +P
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKA-GVKLTVLPL 75
Query: 739 FIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDI 798
+KA + + E P N+S+ P+ + ++ +I A+DT GL+VP I++V++ LL +
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135
Query: 799 TRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP 858
E + + K+ +QG ++S++G++GGT PI+ +V I+ K + P
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195
Query: 859 RFDAEMRIVAKCILNVTWAADHRVVDGATVARAAT-LWKSLENI 901
+D + + +L ++ + D RV++GA AR L L +I
Sbjct: 196 VWDGK-AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADI 238
Score = 134 bits (339), Expect = 2e-35
Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 892 ATLWKSLENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKV 951
++L S + ++ +I A+DT GL+VP I++V++ SLL + E + + K+
Sbjct: 92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKL 151
Query: 952 LPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNV 1011
+QG ++S++G++GGT PI+ +V I+ K + P +D + + +L +
Sbjct: 152 GADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGK-AFQPRLMLPL 210
Query: 1012 TWAADHRVVDGATVARAATLWKSLVENPALLL 1043
+ + D RV++GA AR L+ + +L
Sbjct: 211 SLSYDCRVINGAAAARFTKRLGDLLADIRAIL 242
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 176 bits (448), Expect = 6e-50
Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 10/237 (4%)
Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
A V +V P+ G M + MT + IP+ + + EV +L ++++ +
Sbjct: 4 AAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDR----FV 59
Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQEN--ILVNPDHNISIAIDTKHGLVV 784
++T ++ L + + + ILN++ + E + V+ ++ T+ GL+V
Sbjct: 60 SAA-PEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLV 118
Query: 785 PNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG 844
P + ++ + + + EG + P +++G T ++SN G +G P+I
Sbjct: 119 PVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHP 178
Query: 845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA-ATLWKSLEN 900
+ I+ G I+ P +VA+ + +T DHRVVDGA VA+ L +E+
Sbjct: 179 EAAILGLGAIKPRPVVVGGE-VVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIES 234
Score = 129 bits (326), Expect = 1e-33
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 901 ILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGT 960
+ V+ ++ T+ GL+VP + + ++ + + + EG + P +++G T
Sbjct: 98 VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGST 157
Query: 961 ISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVV 1020
++SN G +G P+I + I+ G I+ P V + +T DHRVV
Sbjct: 158 FTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARP-TMTLTCVFDHRVV 216
Query: 1021 DGATVARAATLWKSLVENPALLL 1043
DGA VA+ + L+E+P L
Sbjct: 217 DGAQVAQFMCELRDLIESPETAL 239
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 160 bits (406), Expect = 1e-44
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 15/219 (6%)
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
+ + G + +F MT+A +P + EEVD T + + + + + K+T F
Sbjct: 9 LEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDS----AKARN-RKVTVTGFL 63
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+ + + ++P LNA D T+ ++ +NI IA+DT GL V IK ++ +++I+
Sbjct: 64 ARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEIS 123
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
E+ + E K+ ++Q T +++NVG +GG + PII +V I+ +I
Sbjct: 124 AEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL---- 179
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSL 898
R K + ++ + DHR++DGA R K +
Sbjct: 180 ----EREGRK-YMYLSLSCDHRLIDGAVATRFIVDLKKV 213
Score = 119 bits (300), Expect = 2e-30
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
NI IA+DT GL V IK ++ S+++I+ E+ + E K+ ++Q T +++NVG
Sbjct: 95 NIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVG 154
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVAR 1027
+GG + PII +V I+ +I R K + ++ + DHR++DGA R
Sbjct: 155 TIGGIMSTPIINYPEVAILGVHRIL--------EREGRK-YMYLSLSCDHRLIDGAVATR 205
Query: 1028 AATLWKSLVENPALLL 1043
K ++E+P ++
Sbjct: 206 FIVDLKKVIEDPNAII 221
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 157 bits (398), Expect = 2e-43
Identities = 63/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%)
Query: 668 PAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQ 726
P IPI + + + + ++ TIP L+ +V+ ++ V+ +++ + +
Sbjct: 2 PGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE 61
Query: 727 EKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPN 786
+ K++ F IKA +L + P N+S I N ++S+A+ T GL+ P
Sbjct: 62 GRS--KISVNDFIIKASALACLKVPEANSSWMD--TVIRQNHVVDVSVAVSTPAGLITPI 117
Query: 787 IKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQV 846
+ + + + I +++ + + EGK+ P + QGGT ++SN+G G II P Q
Sbjct: 118 VFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQA 177
Query: 847 CIVAFGKIQLLPRF-DAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
CI+A G + D E +++VT + DHRVVDGA A L P
Sbjct: 178 CILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAV---GAQWLAEFRKYLEKP 234
Score = 124 bits (313), Expect = 5e-32
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
I N ++S+A+ T GL+ P + + + + I +++ + + EGK+ P + QG
Sbjct: 93 TVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQG 152
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRF-DAEMRVVAKCILNVTWAADH 1017
GT ++SN+G G II P Q CI+A G + D E +++VT + DH
Sbjct: 153 GTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDH 212
Query: 1018 RVVDGATVARAATLWKSLVENPALLL 1043
RVVDGA A+ ++ +E P +L
Sbjct: 213 RVVDGAVGAQWLAEFRKYLEKPITML 238
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 145 bits (367), Expect = 4e-39
Identities = 69/253 (27%), Positives = 118/253 (46%), Gaps = 7/253 (2%)
Query: 666 TNPAHTAHVREASNVIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSAL 724
P IPI G K + K M+ + IP + EVD T L +N V
Sbjct: 6 AMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDS 65
Query: 725 YQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVV 784
++++ LTY FFIKA++ + E P LN++ + I+ + + NISIAI L V
Sbjct: 66 FKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWA--GDKIIEHANINISIAIAAGDLLYV 123
Query: 785 PNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPG 844
P IK+ ++ + I RE+ + G + GK+ D++GGT ++++ G+ G II
Sbjct: 124 PVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHP 183
Query: 845 QVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVN 904
Q I+ I P +M I + ++N+ + DHR++DG A ++++ +
Sbjct: 184 QAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLL---AGKFLQAIKANVEK 239
Query: 905 PDHNISIAIDTKH 917
+ + H
Sbjct: 240 ISKENTALYEGHH 252
Score = 99.3 bits (248), Expect = 3e-23
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
+ I+ + + NISIAI L VP IK+ ++ S+ I RE+ + G + GK+ D++G
Sbjct: 101 DKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEG 160
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
GT ++++ G+ G II Q I+ I P +M + + ++N+ + DHR
Sbjct: 161 GTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHR 219
Query: 1019 VVDGATVARAATLWKSLVENPA 1040
++DG + K+ VE +
Sbjct: 220 ILDGLLAGKFLQAIKANVEKIS 241
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 120 bits (302), Expect = 2e-32
Identities = 51/91 (56%), Positives = 66/91 (72%), Gaps = 2/91 (2%)
Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
+++QFKL+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 246 VYYGEGDVALVGKPLLDIEVEDEGVAAEEAD 276
+YY D+A VGKPL+DIE E
Sbjct: 61 LYYNLDDIAYVGKPLVDIETEALKDLEHHHH 91
Score = 118 bits (298), Expect = 6e-32
Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 2/91 (2%)
Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
+++QF L+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 506 VYYGEGDVALVGKPLLDIEVEDEGVAAEEAD 536
+YY D+A VGKPL+DIE E
Sbjct: 61 LYYNLDDIAYVGKPLVDIETEALKDLEHHHH 91
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 109 bits (274), Expect = 6e-27
Identities = 47/179 (26%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 708 EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVN 767
EV+ + D++ Q ++++ ++L +M F++KA+ + +P +NASID ++++ +
Sbjct: 35 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASID--GDDVVYH 92
Query: 768 PDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRDIQGGTISMS 827
++S+A+ T GLV P ++ V+ L + DI +++ + +GK+ D+ GG +++
Sbjct: 93 NYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTIT 152
Query: 828 NVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP-RFDAEMRIVAKCILNVTWAADHRVVDG 885
N G G + PII P Q I+ I+ P + + + ++ + + DHR++DG
Sbjct: 153 NGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQ--VEILPMMYLALSYDHRLIDG 209
Score = 80.0 bits (198), Expect = 9e-17
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 908 NISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISMSNVG 967
++S+A+ T GLV P ++ V+ L + DI +++ + +GK+ D+ GG +++N G
Sbjct: 96 DVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGG 155
Query: 968 NVGGTLVQPIIVPRQVCIVAFGKIQLLP-RFDAEMRVVAKCILNVTWAADHRVVDGATVA 1026
G + PII P Q I+ I+ P + + V ++ + + DHR++DG
Sbjct: 156 VFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQ--VEILPMMYLALSYDHRLIDGRESV 213
Query: 1027 RAATLWKSLVENPALLL 1043
K L+E+P LL
Sbjct: 214 GFLVTIKELLEDPTRLL 230
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 88.4 bits (220), Expect = 2e-21
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ +FKL DIGEG+ E I W+ V EG + + + EV +DK +V I S +G + K+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 247 YYGEGDVALVGKPLLDIE 264
Y EG V VG LL I+
Sbjct: 59 LYREGQVVPVGSTLLQID 76
Score = 86.9 bits (216), Expect = 5e-21
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ +F L DIGEG+ E I W+ V EG + + + EV +DK +V I S +G + K+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWD--VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Query: 507 YYGEGDVALVGKPLLDIE 524
Y EG V VG LL I+
Sbjct: 59 LYREGQVVPVGSTLLQID 76
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 91.8 bits (228), Expect = 7e-21
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 35/201 (17%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 4 IKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
Query: 248 YGEGD-VALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
EG +G + I E E E D P VS+ + P S +P
Sbjct: 62 VEEGSKNIRLGSLIGLIVEEGEDWKHVEIPK-DVGPPPPVSKPSEPRPSPEPQI------ 114
Query: 307 NKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKHYEIDTKEL 366
I K + P R +P+ R +++ + +D +
Sbjct: 115 ------SIPVKKEHIPGTLR-------------------FRLSPAARNILEKHSLDASQG 149
Query: 367 RGTGKQGRVLKEDIITYMNSP 387
TG +G KED + +
Sbjct: 150 TATGPRGIFTKEDALKLVQLK 170
Score = 82.9 bits (205), Expect = 8e-18
Identities = 34/179 (18%), Positives = 58/179 (32%), Gaps = 23/179 (12%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I+ + + + E NI +W EG ++ D +CE+E+DKA VT+ + G + K+
Sbjct: 4 IKILMPSLSPTMEEGNIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 61
Query: 508 YGEGD-VALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKDP 566
EG +G + I E E E P + + K
Sbjct: 62 VEEGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKE 121
Query: 567 --------------------NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTA 605
+ +D + TG +G KED + +
Sbjct: 122 HIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKITESRP 180
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 85.1 bits (210), Expect = 1e-18
Identities = 23/194 (11%), Positives = 54/194 (27%), Gaps = 19/194 (9%)
Query: 717 VKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAI 776
K ++ L + + P I ++ + + L +I + ++V + +
Sbjct: 32 SKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIK--DDELIVWDSVDPQFTV 89
Query: 777 DTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVL--PRDIQGGTISMSNVGNVGG 834
+ + + L + L +++S + V
Sbjct: 90 FHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNF 149
Query: 835 TLVQPIIVPGQVC---IVAFGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARA 891
+ I+ K R+ +L ++ H V DG VAR
Sbjct: 150 DSFNLNVANFTDYFAPIITMAKY-----QQEGDRL----LLPLSVQVHHAVCDGFHVAR- 199
Query: 892 ATLWKSLENILVNP 905
L+ + +
Sbjct: 200 --FINRLQELCNSK 211
Score = 64.7 bits (157), Expect = 9e-12
Identities = 17/146 (11%), Positives = 39/146 (26%), Gaps = 14/146 (9%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL--PRDI 956
+ ++V + + + + + L + L
Sbjct: 75 DELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134
Query: 957 QGGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVTW 1013
+++S + V + I+ K Q + + +L ++
Sbjct: 135 PENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQ---------QEGDRLLLPLSV 185
Query: 1014 AADHRVVDGATVARAATLWKSLVENP 1039
H V DG VAR + L +
Sbjct: 186 QVHHAVCDGFHVARFINRLQELCNSK 211
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Length = 219
Score = 84.0 bits (207), Expect = 3e-18
Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 32/220 (14%)
Query: 690 MFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTE 749
F+S+ + + T ++D T + + K + P FI L+ M
Sbjct: 24 AFQSVAQ----CTYNQTVQLDITAF----------LKTVKKNKHKFYPAFIHILARLMNA 69
Query: 750 HPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCS 809
HP ++ +++ + + + ++ S + C
Sbjct: 70 HPEFRMAMKD--GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACY 127
Query: 810 HEGKVL-PRDIQGGTISMSNVGNVGGTLVQPIIVPGQVC---IVAFGKIQLLPRFDAEMR 865
E P+ +S V T + + GK + +
Sbjct: 128 GENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDK 182
Query: 866 IVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNP 905
++ + + H V DG V R + L+
Sbjct: 183 VL----MPLAIQVHHAVCDGFHVGR---MLNELQQYCDEW 215
Score = 66.3 bits (161), Expect = 3e-12
Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 13/145 (8%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL-PRDIQ 957
+++ + + + ++ S + C E P+
Sbjct: 80 GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 139
Query: 958 GGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVTWA 1014
+S V T + + GK + D + + +
Sbjct: 140 ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYY--TQGDKVL-------MPLAIQ 190
Query: 1015 ADHRVVDGATVARAATLWKSLVENP 1039
H V DG V R + +
Sbjct: 191 VHHAVCDGFHVGRMLNELQQYCDEW 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.1 bits (207), Expect = 2e-16
Identities = 103/701 (14%), Positives = 200/701 (28%), Gaps = 212/701 (30%)
Query: 175 HHHLHTSCIRHKLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT 234
HHH H Q++ DI V E A ++ FD C+ D
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILS-------------VFEDAFVDNFD--CKDVQDMPKSI 45
Query: 235 ITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSE-VNTPD 293
++ + + D L L K V + V +
Sbjct: 46 LSKE---EIDHII-MSKDAVSGTLRLFWT--------------LLSKQEEMVQKFV---E 84
Query: 294 TSDQPN-----ETLHKEPNKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILA 348
+ N + E + P + + ++ N N+ + A
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ-------------PSMMTRMYIEQRDRLYNDNQ----VFA 127
Query: 349 TPSVRRMIKHYEIDT--KELR-----------GTGKQ---GRVLK-EDIITYMNSPIDET 391
+V R+ + ++ ELR G+GK V + M+ I
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 392 NLAHTAHVREASNVISIRGYVKGMFKSMTEAHGHHLSTPPLQCH-----------HHLHT 440
NL + V+ + + + H S L+ H +
Sbjct: 188 NLKN---CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 441 SCIRHKLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYK 500
+C+ L+ L ++ N N F++ C+ + +T+R+K
Sbjct: 245 NCL---LV---LLNV-----------QNAKA-----WNAFNLSCK-------ILLTTRFK 275
Query: 501 GTVRKVYYGEGDVALVGKPLLDIEVED--EGVAAEEADSLDRKAAPGVSEVNTPDTSDQP 558
L I ++ + +E SL K ++ D P
Sbjct: 276 QVTD---------FLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDC-RPQDLP 319
Query: 559 NETLHKDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAHTAHVREAS-NVISIR 617
E L +P ++ +++ + T+ N + + E+S NV+
Sbjct: 320 REVLTTNPRRLSII--------AESIRDGLATWDNWKHVNCDK--LTTIIESSLNVLE-P 368
Query: 618 GYVKGMFKSMT--EANT-IPSLRL--------TEEVD--TTQL-------RDVKKE---- 653
+ MF ++ + IP++ L +V +L + K+
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 654 -DIITYMNSPSDETNPAHTAHVREASNVI-----------PIRGYV----------KGMF 691
I + + H + + N+ + Y
Sbjct: 429 PSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 692 KSMTEANTI-PSLRLTE---EVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCM 747
+ MT + R E D+T + ++ L Q KF Y P+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----YKPYICDN---DP 539
Query: 748 TEHPILNASID--PTQENILVNPDHN--ISIAIDTKHGLVV 784
++NA +D P E L+ + + IA+ + +
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 62.6 bits (151), Expect = 6e-10
Identities = 73/528 (13%), Positives = 135/528 (25%), Gaps = 162/528 (30%)
Query: 69 NEVLLDTILGEFKADVVGWYSFTRNQDLSQSLCQLFLAHHFSNYFSHIPKQLFLFFRIST 128
+V L + + W + L L L ++I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML----------------QKLLYQIDP 211
Query: 129 NVVFEENFTYTNKFLCTTGSDSLSRKFSSSLQLRHGLHLSTPPLQCHHHLHTSCIRHKLI 188
N + + K + L R S + L L+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCL---------------------LV 249
Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
L ++ N N F++ C+ + +T+R+K
Sbjct: 250 ---LLNV-----------QNAKA-----WNAFNLSCK-------ILLTTRFKQVTD---- 279
Query: 249 GEGDVALVGKPLLDIEVED--EGVAAEEADSLDRKAAPGVSEVNTPDTSDQPNETLHKEP 306
L I ++ + +E SL K ++ D P E L
Sbjct: 280 -----FLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDC-RPQDLPREVL---- 323
Query: 307 NKVNREPIAHKPDVTPDLSRDSAVSHLNQPVNLNKNKWKILATPSVRRMIKH-YE-IDTK 364
N P + + RD + N WK + + +I+ ++
Sbjct: 324 -TTN--PRRLS--IIAESIRD--------GLATWDN-WKHVNCDKLTTIIESSLNVLEPA 369
Query: 365 ELRGTGKQGRVLKEDI-ITYM--------NSPIDETNLAHTAHVR------EASNVISIR 409
E R + V I + D + + H + ISI
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 410 GY---VKGMFKSMTEAH--------------GHHLSTPPLQ----CH--HHLHTSCIRHK 446
+K ++ H L P L H HHL +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 447 LIQF-----NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT----ITS 497
+ F + + + IR + WN A + + + +++ K +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTA-WN------ASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 498 RYKGTVRKVYYGEGDVALVGKPLLDI-----EVEDEGVAAEEADSLDR 540
R + + L+ D+ EDE + E + R
Sbjct: 543 RLVNAILDFLPKIEEN-LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 50.2 bits (119), Expect = 3e-06
Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 54/206 (26%)
Query: 15 CKTGFLFGEIHRKVSNVTT------DSHSNNETVEITVS-ITATLPFSESEDLLFS---- 63
CK L +TT D S T I++ + TL E + LL
Sbjct: 266 CKI--L----------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 64 KDGTL-NEV-----LLDTILGEFKADVVGWYSFTRNQDLSQ--SLCQLFLAHHFSNYFSH 115
+ L EV +I+ E D + + ++ + + ++ + L +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 116 IPKQLFLF---FRISTNV--------VFEENFTYTNKFLCTTGSDSLSRKFSSSLQLR-H 163
+ +L +F I T + + + NK SL K +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH----KYSLVEKQPKESTISIP 429
Query: 164 GLHLSTPPLQCH----HHLHTSCIRH 185
++L L+ + LH S + H
Sbjct: 430 SIYLE---LKVKLENEYALHRSIVDH 452
Score = 38.3 bits (88), Expect = 0.015
Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 55/209 (26%)
Query: 39 NETVEITVSITATL----PFSESEDL--------LFSKDG-----TLNEVLLDT-----I 76
+ I + + + S+ + L K ++ + L+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 77 LGEFKADVVGWYSFTRNQDLSQSLCQL-------FLAHHFSN-----YFSHIPKQLFLFF 124
+V Y+ + D + + HH N + +FL F
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDF 500
Query: 125 RISTNVVFEEN-FTYTNKFLCTTGS--DSLS--RKFSSSLQLRHGLH------LSTPPLQ 173
R F E + + +GS ++L + + + + + +
Sbjct: 501 R------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 174 CHHHLHTSCIRHK-LIQFKLADIGEGIRE 201
+L S ++ L++ L E I E
Sbjct: 555 IEENLICS--KYTDLLRIALMAEDEAIFE 581
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 61.5 bits (150), Expect = 3e-12
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSPIDETNLAH 395
K LATP+VR + I E+ G+GK GR+LKEDI+ Y+ E + H
Sbjct: 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLEHHHHH 57
Score = 43.0 bits (102), Expect = 9e-06
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPAH 603
N I E+ G+GK GR+LKEDI+ Y+ + E + H
Sbjct: 21 NNIKLSEVVGSGKDGRILKEDILNYLEKQTLEHHHHH 57
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 59.0 bits (143), Expect = 3e-11
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
K LATP+VRR+ I E+ G+GK GR+LKEDI+ Y+
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 57
Score = 43.2 bits (102), Expect = 1e-05
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA 602
N I E+ G+GK GR+LKEDI+ Y+ + P
Sbjct: 29 NNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPP 64
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex,
oxidoreductase; HET: FAD NAD; 1.80A {Thermus
thermophilus}
Length = 40
Score = 56.1 bits (136), Expect = 2e-10
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 347 LATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
LA P+ R+++ + E++GTG GR+LKED++ ++
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
Score = 39.5 bits (93), Expect = 1e-04
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYM 592
+ E++GTG GR+LKED++ ++
Sbjct: 13 KGVSPAEVQGTGLGGRILKEDVMRHL 38
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 62.6 bits (153), Expect = 7e-10
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 45/192 (23%)
Query: 740 IKALSLCMTEHPILNASID-----PTQENILVNPDH-NISIAIDT-----KHGLVVPNIK 788
++A+ + P +N PT + P H N+ +AID LVV IK
Sbjct: 52 VQAVK----KFPNMNRHFAVVDGKPT----AITPAHTNLGLAIDLQGKDGNRSLVVAAIK 103
Query: 789 SVNKLCLL-------DITRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPII 841
+ DI R + +GK+ D G TIS++N G +G P +
Sbjct: 104 RCETMRFGQFIAAYEDIVRR-------ARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRL 156
Query: 842 VPGQVCIVAFGKIQLLPRFD-------AEMRIVAKCILNVTWAADHRVVDGATVARAATL 894
+ GQ I+ G ++ F A++ I L T+ DHR++ GA +
Sbjct: 157 MQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTY--DHRIIQGAE---SGDF 211
Query: 895 WKSLENILVNPD 906
+++ +L++ D
Sbjct: 212 LRTIHQLLLDDD 223
Score = 56.0 bits (136), Expect = 5e-08
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 902 LVNPDH-NISIAIDT-----KHGLVVPNIKSVNKLSLL-------DITRELLRIQGCSHE 948
+ P H N+ +AID LVV IK + DI R + +
Sbjct: 74 AITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRR-------ARD 126
Query: 949 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFD-------AEM 1001
GK+ D G TIS++N G +G P ++ Q I+ G ++ F A++
Sbjct: 127 GKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADL 186
Query: 1002 RVVAKCILNVTWAADHRVVDGATVARAATLWKSLVENP 1039
+ L T+ DHR++ GA L+ +
Sbjct: 187 GIGKLITLTSTY--DHRIIQGAESGDFLRTIHQLLLDD 222
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 55.0 bits (133), Expect = 1e-09
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ + + DI E EV +K G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIVEVT-EVMVKV-------GDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53
Query: 247 YYGEGDVALVGKPLLDIEVEDEGVAAEEA 275
GD G ++ EVE AA A
Sbjct: 54 KVNVGDKVKTGSLIMIFEVEGAAPAAAPA 82
Score = 53.5 bits (129), Expect = 4e-09
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ + N+ DI E EV +K G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIVEVT-EVMVKV-------GDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53
Query: 507 YYGEGDVALVGKPLLDIEVEDEGVAAEEA 535
GD G ++ EVE AA A
Sbjct: 54 KVNVGDKVKTGSLIMIFEVEGAAPAAAPA 82
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A
2btg_A 2bth_A 2cyu_A
Length = 51
Score = 53.1 bits (128), Expect = 3e-09
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 341 KNKWKILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386
+ + +P++RR++ + +D ++GTG GR+ +ED+ ++
Sbjct: 5 EEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 50
Score = 39.3 bits (92), Expect = 2e-04
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMNS 594
+ +D ++GTG GR+ +ED+ ++
Sbjct: 23 HNLDASAIKGTGVGGRLTREDVEKHLAK 50
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 52.9 bits (128), Expect = 3e-09
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNS 386
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 47
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPS 596
+D + ++GTGK GRVLKEDI ++ +
Sbjct: 22 VDIRLVQGTGKNGRVLKEDIDAFLAGGA 49
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 52.3 bits (126), Expect = 5e-09
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMNSP 387
++ A P+ RR+ K ID +++GTG G + ED+ Y
Sbjct: 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46
Score = 38.5 bits (90), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYMNSPSDETNPA 602
ID +++GTG G + ED+ Y + T PA
Sbjct: 20 IDLSKVKGTGPGGVITVEDVKRYAEETAKATAPA 53
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 54.0 bits (130), Expect = 7e-09
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 16/123 (13%)
Query: 175 HHHLHTSCIRHKLIQFKLADIGEGIR-----------EVNIKEWNGNVTEGARINEFDVV 223
HHH H R + + F+ + ++ ++ W G +++E D++
Sbjct: 4 HHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLL 61
Query: 224 CEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDEGVAAEEADSLDRK 281
E+E+DKA++ + +G + K+ EG DV +G PL I ++ ++A
Sbjct: 62 AEIETDKATIGFEVQEEGYLAKILVPEGTRDVP-LGTPLCIIVEKEADISAFADYRPTEV 120
Query: 282 AAP 284
Sbjct: 121 TDL 123
Score = 54.0 bits (130), Expect = 7e-09
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 435 HHHLHTSCIRHKLIQFNLADIGEGIR-----------EVNIKEWNGNVTEGARINEFDVV 483
HHH H R + + F + ++ ++ W G +++E D++
Sbjct: 4 HHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLL 61
Query: 484 CEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPLLDIEVEDEGVAAEEADSLDRK 541
E+E+DKA++ + +G + K+ EG DV +G PL I ++ ++A
Sbjct: 62 AEIETDKATIGFEVQEEGYLAKILVPEGTRDVP-LGTPLCIIVEKEADISAFADYRPTEV 120
Query: 542 AAP 544
Sbjct: 121 TDL 123
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 50.7 bits (122), Expect = 4e-08
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ + + DIG EV + E V G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
Query: 247 YYGEGDVALVGKPLLDIEVEDEG 269
GD G ++ EVE
Sbjct: 58 KVNVGDKVKTGSLIMIFEVEGAA 80
Score = 49.2 bits (118), Expect = 1e-07
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ + N+ DIG EV + E V G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIGG--DEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
Query: 507 YYGEGDVALVGKPLLDIEVEDEG 529
GD G ++ EVE
Sbjct: 58 KVNVGDKVKTGSLIMIFEVEGAA 80
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein
structure initiative, midwest center for structural
genomics; 2.30A {Bacteroides thetaiotaomicron}
Length = 217
Score = 54.0 bits (129), Expect = 4e-08
Identities = 22/205 (10%), Positives = 48/205 (23%), Gaps = 43/205 (20%)
Query: 848 IVAFGKIQLLPRFDAEMRIVAKCI-----LNVTWAADHRVVDGATVARAATLWKSLENIL 902
K F + V + D RVV L+ ++
Sbjct: 41 ARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVV----------LYDTI---- 86
Query: 903 VNPDHNISIAI-----DTKHGLVVPNIKSVNKL--SLLDITRELLRIQGCSHEGKVLPRD 955
++ I P + I + D
Sbjct: 87 -----DMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVAD 141
Query: 956 IQGGTISMSNVGNVGGTLVQPIIVPRQVC---IVAFGKIQLLPRFDAEMRVVAKCILNVT 1012
G I +S ++ T + R ++ GK + + ++ +
Sbjct: 142 GDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKA---------IIREGRLVMPIA 192
Query: 1013 WAADHRVVDGATVARAATLWKSLVE 1037
H +DG ++ + ++
Sbjct: 193 MTIHHGFIDGHHLSLFYKKVEDFLK 217
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 50.3 bits (121), Expect = 5e-08
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
L++ K+ DIG G V+I V G I D + +E+DKA++ + + G V++V
Sbjct: 2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58
Query: 247 YYGEGDVALVGKPLLDIEVEDEG 269
GD G ++ +E E
Sbjct: 59 KVKVGDKISEGGLIVVVEAEGTA 81
Score = 48.8 bits (117), Expect = 1e-07
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
L++ + DIG G V+I V G I D + +E+DKA++ + + G V++V
Sbjct: 2 LVELKVPDIG-GHENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58
Query: 507 YYGEGDVALVGKPLLDIEVEDEG 529
GD G ++ +E E
Sbjct: 59 KVKVGDKISEGGLIVVVEAEGTA 81
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 50.4 bits (121), Expect = 9e-08
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
I W EG +INE D++ EVE+DKA+V S + + K+ EG DV +G +
Sbjct: 23 TIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVP-IGAII 79
Query: 261 LDIEVEDEGVAAEEADSLDRKAAPG 285
+ E + A + +LD AA G
Sbjct: 80 CITVGKPEDIEAFKNYTLDSSAASG 104
Score = 50.4 bits (121), Expect = 9e-08
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
I W EG +INE D++ EVE+DKA+V S + + K+ EG DV +G +
Sbjct: 23 TIARWE--KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVP-IGAII 79
Query: 521 LDIEVEDEGVAAEEADSLDRKAAPG 545
+ E + A + +LD AA G
Sbjct: 80 CITVGKPEDIEAFKNYTLDSSAASG 104
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 2.09A {Thermus thermophilus}
Length = 41
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 346 ILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
+LA P+ R++ + I +E+ G+G GRV ED+ Y
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40
Score = 33.2 bits (77), Expect = 0.017
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYMN 593
I +E+ G+G GRV ED+ Y
Sbjct: 16 IPIEEVPGSGPLGRVRVEDVRAYAE 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-07
Identities = 83/474 (17%), Positives = 144/474 (30%), Gaps = 165/474 (34%)
Query: 583 VLKEDIITYMNSPSDE-------TNPA--------HTAHVREASNVISIRGYVKGMFKSM 627
L+E + P++ T PA + + + E S V +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 628 TEA----NTIPSL--RLTEEVDTTQLRDVKKEDIITY------MNSPSDETNPA--HTAH 673
N I +L +L +E DTT ++ KE I Y P D+ + + A
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 674 VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKL 733
+ ++ I G G + NT EE LRD LYQ
Sbjct: 150 GEGNAQLVAIFG---G------QGNTDDYF---EE-----LRD-------LYQ------- 178
Query: 734 TYMPFFIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKL 793
TY + L E L+ I T + G
Sbjct: 179 TYHV-LVGDLIKFSAET--LSELIRTTLD---AEKVF--------TQG------------ 212
Query: 794 CLLDITRELLRIQGCSHEGKVLPRD-IQGGTISMSNVGNVGGTLVQPIIVPGQVC--IVA 850
L+I L + +D + IS P+I Q+ +V
Sbjct: 213 --LNILEWL------ENPSNTPDKDYLLSIPISC------------PLIGVIQLAHYVVT 252
Query: 851 FGKIQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVN------ 904
+ P E+R K + +V +A + W+S +
Sbjct: 253 AKLLGFTP---GELRSYLKGATGHSQG----LVTAVAIAETDS-WESFFVSVRKAITVLF 304
Query: 905 ----------PDHNISIAI---DTKHGLVVPN-IKSVNKLSLLDITRELL--RIQGCSHE 948
P+ ++ +I ++ VP+ + LS+ ++T+E + + +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQVQDYVNKTNSH 359
Query: 949 GKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMR 1002
LP Q + +S V N G + + +V+ G Q L + +R
Sbjct: 360 ---LPAGKQ---VEISLV-N-G---------AKNL-VVS-GPPQSLYGLNLTLR 394
Score = 46.2 bits (109), Expect = 6e-05
Identities = 51/297 (17%), Positives = 90/297 (30%), Gaps = 123/297 (41%)
Query: 621 KGMFKSMTEANTIPSLR-LTEEVDTTQLRDVKKEDIITYMNSPSD--ETNP-AHTAH--- 673
+GM M T + + + D +D TY S D NP T H
Sbjct: 1629 QGM--GMDLYKTSKAAQDVWNRADN-HFKD-------TYGFSILDIVINNPVNLTIHFGG 1678
Query: 674 -----VREASNVIPIRGYVKGMFKSMTEANTIPSLRLTEEVDTTQLRDVKNQVSALYQEK 728
+RE Y +F+++ + + ++ +E++
Sbjct: 1679 EKGKRIRE--------NYSAMIFETIVDGKLK-TEKIFKEIN------------------ 1711
Query: 729 FRLKLTYMPFFIKALSLCMTEHP--ILNASIDPTQEN----ILVNPDHNISIAI--DTK- 779
+ + +L+A TQ + + + A D K
Sbjct: 1712 ------------EHSTSYTFRSEKGLLSA----TQ-FTQPALTL-----MEKAAFEDLKS 1749
Query: 780 HGLVVPNIK----SV---NKLC----LLDI--TRELLRIQGCSHEGKVLPRDIQGGT-IS 825
GL+ + S+ L ++ I E++ +G + + V PRD G +
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV-PRDELGRSNYG 1808
Query: 826 MS--NVGNVG-------------------GTLVQPIIV----PGQVCIVAFGKIQLL 857
M N G V G LV+ IV Q + A G ++ L
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVE--IVNYNVENQQYVAA-GDLRAL 1862
Score = 38.9 bits (90), Expect = 0.012
Identities = 70/414 (16%), Positives = 127/414 (30%), Gaps = 142/414 (34%)
Query: 364 KELRGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVREA--SNVISIRGYVKGMFKSMTE 421
+ELR + VL D+I + + E L T E + ++I +++ S T
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWLEN--PSNTP 226
Query: 422 AHGHHLSTP---PL----QCHHHLHTSCIRHKLIQFNLADIGEGI--REVNI-------- 464
+ LS P PL Q H++ T L +G +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 465 ----KEWNGNVTE--------GARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGD 512
+ + +V + G R E + S+ S + EG
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PSILEDS--------LENNEGV 334
Query: 513 ----VALVGKPLLDIEVEDEGVAAEEADSLDRKAAPGVSEVNTPD----TSDQPNETLH- 563
+++ L +V+D + L +S VN + P ++L+
Sbjct: 335 PSPMLSISN--LTQEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNLVVSG--PPQSLYG 388
Query: 564 --------KDPNKIDTKELRGTGKQGRVLKEDIITYMNSPSDE------------TNPAH 603
K P+ +D Q R+ P E +P H
Sbjct: 389 LNLTLRKAKAPSGLD---------QSRI-----------PFSERKLKFSNRFLPVASPFH 428
Query: 604 TAHVREASNVIS---IRGYVKGMFKSMTEANTIPSLRLTEEV-DTTQ---LRDVKKE--- 653
+ + AS++I+ ++ V F + +++ V DT LR +
Sbjct: 429 SHLLVPASDLINKDLVKNNVS--FNA-------KDIQIP--VYDTFDGSDLRVLSGSISE 477
Query: 654 ---DIITYMNSPSDETNPAH--TAHVREASNVI---PIRGYVKGMFKSMTEANT 699
D I P T +A++++ P G G+ +T N
Sbjct: 478 RIVDCII--------RLPVKWETTTQFKATHILDFGP--GGASGL-GVLTHRNK 520
Score = 35.4 bits (81), Expect = 0.11
Identities = 53/374 (14%), Positives = 105/374 (28%), Gaps = 118/374 (31%)
Query: 702 SLRLTEEVDT------TQLRD--------------VKNQVSA---LYQEKFRLKLTYMPF 738
SL V T +QL++ ++ + L KF L Y+
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV-GKF---LGYVSS 70
Query: 739 FIKALSLCMTEHPILNASIDPTQENILVNPD-HNISIAIDTKHGLVVPNIKSVNKLCLLD 797
++ + + +LN + + L D H ++ + ++ + K
Sbjct: 71 LVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK--------- 120
Query: 798 ITRELLR--IQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIV--PGQVCIVAFGK 853
EL++ I + + GN ++ GQ G
Sbjct: 121 ---ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ------LVAIFGGQ------GN 165
Query: 854 IQLLPRFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKSLENILVNPDHNISIAI 913
F+ E+R + + H +V G + +A L ++ +
Sbjct: 166 TD--DYFE-ELRDL--------YQTYHVLV-GDLIKFSAET---LSELIRTTLDAEKVF- 209
Query: 914 DTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRD-IQGGTISMSNVGNVGGT 972
GL +I L + +D + IS
Sbjct: 210 --TQGL--------------NILEWL------ENPSNTPDKDYLLSIPISC--------- 238
Query: 973 LVQPIIVPRQVC--IVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGATVARAAT 1030
P+I Q+ +V + P E+R K + +V +A +
Sbjct: 239 ---PLIGVIQLAHYVVTAKLLGFTP---GELRSYLKGATGHSQG----LVTAVAIAETDS 288
Query: 1031 LWKSLVENPALLLT 1044
W+S + +T
Sbjct: 289 -WESFFVSVRKAIT 301
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 48.0 bits (115), Expect = 5e-07
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
NI +W EG ++ D +CE+E+DKA VT+ + G + K+ EG ++ +G +
Sbjct: 23 NIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR-LGSLI 79
Query: 261 LDIEVEDEGVAAEEADS 277
I E E S
Sbjct: 80 GLIVEEGEDWKHVSGPS 96
Score = 48.0 bits (115), Expect = 5e-07
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
NI +W EG ++ D +CE+E+DKA VT+ + G + K+ EG ++ +G +
Sbjct: 23 NIVKWL--KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIR-LGSLI 79
Query: 521 LDIEVEDEGVAAEEADS 537
I E E S
Sbjct: 80 GLIVEEGEDWKHVSGPS 96
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 46.8 bits (112), Expect = 7e-07
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 189 QFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYY 248
++ DIG + + E V G I + +ES KAS+ + S G V+ V
Sbjct: 3 IIRVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSV 57
Query: 249 GEGDVALVGKPLLDIEVEDEG 269
GD G ++++E
Sbjct: 58 KLGDKLKEGDAIIELEPAAGA 78
Score = 46.4 bits (111), Expect = 9e-07
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 454 DIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDV 513
DIG + + E V G I + +ES KAS+ + S G V+ V GD
Sbjct: 8 DIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62
Query: 514 ALVGKPLLDIEVEDEG 529
G ++++E
Sbjct: 63 LKEGDAIIELEPAAGA 78
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 1.94A {Thermus thermophilus}
Length = 40
Score = 45.1 bits (108), Expect = 9e-07
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 348 ATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
A PS+RR+ + +D LRGTG GR+ +ED+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38
Score = 32.8 bits (76), Expect = 0.025
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 569 IDTKELRGTGKQGRVLKEDIITYM 592
+D LRGTG GR+ +ED+
Sbjct: 15 VDLTRLRGTGLAGRITEEDVRRAA 38
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 46.2 bits (110), Expect = 1e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267
V +G + E+E K +T+ + +G V+ + G V G + +E++D
Sbjct: 21 VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 76
Score = 46.2 bits (110), Expect = 1e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527
V +G + E+E K +T+ + +G V+ + G V G + +E++D
Sbjct: 21 VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 76
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 45.5 bits (108), Expect = 4e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267
V +G + E+E K +T+ + +G V+ + G V G + +E++D
Sbjct: 33 VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 88
Score = 45.5 bits (108), Expect = 4e-06
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527
V +G + E+E K +T+ + +G V+ + G V G + +E++D
Sbjct: 33 VEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDD 88
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 49.6 bits (119), Expect = 6e-06
Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 356 IKHYEIDTKEL---RGTGKQGRVLKEDIITYMNSPIDETNLAHTAHVRE-ASNVISIRGY 411
++ Y + +EL G+ + ++E+ H ++ N+ SI +
Sbjct: 1076 VEFYPVTEEELEVIIEDNDNGKFKID---------VEESIFDHKEYLAWINENIDSIVAF 1126
Query: 412 VKGMFKSMTEAHGHHLSTPPLQCHHHLHTSCIRHKLIQFNLADIGEGIR-EVNIKEWNGN 470
+ + + + + D E + E + W
Sbjct: 1127 QEAQGGEKADEFARLIQVANAELKKSGDDKPQDVE----EYPDDAELLYSEYTGRFWKPV 1182
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
G + D V +E+ K + + + G V K+ + GD+ G + I
Sbjct: 1183 AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
Score = 44.6 bits (106), Expect = 2e-04
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
W G + D V +E+ K + + + G V K+ + GD+ G + I
Sbjct: 1179 WKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase kinase
isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo
sapiens} PDB: 3crl_C*
Length = 87
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 260
++ W G +++E D++ E+E+D A++ + +G + K+ EG DV +G PL
Sbjct: 21 TVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVP-LGTPL 77
Query: 261 LDIEVEDEGV 270
I ++ +
Sbjct: 78 CIIVEKEADI 87
Score = 43.2 bits (102), Expect = 2e-05
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEG--DVALVGKPL 520
++ W G +++E D++ E+E+D A++ + +G + K+ EG DV +G PL
Sbjct: 21 TVQRWE--KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVP-LGTPL 77
Query: 521 LDIEVEDEGV 530
I ++ +
Sbjct: 78 CIIVEKEADI 87
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 42.2 bits (100), Expect = 3e-05
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 207 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 266
W +V G +I + V +ES K + I + G V++V EGD G LL++
Sbjct: 11 WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70
Query: 267 DE 268
+
Sbjct: 71 TQ 72
Score = 42.2 bits (100), Expect = 3e-05
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 467 WNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVE 526
W +V G +I + V +ES K + I + G V++V EGD G LL++
Sbjct: 11 WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70
Query: 527 DE 528
+
Sbjct: 71 TQ 72
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 40.1 bits (94), Expect = 3e-04
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 269
V G ++ D + + + K TI S GTV+KV+Y EG A PL++ E E+
Sbjct: 29 FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESD 88
Query: 270 VAAEEADS 277
E+
Sbjct: 89 KRESESGP 96
Score = 40.1 bits (94), Expect = 3e-04
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 529
V G ++ D + + + K TI S GTV+KV+Y EG A PL++ E E+
Sbjct: 29 FVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESD 88
Query: 530 VAAEEADS 537
E+
Sbjct: 89 KRESESGP 96
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding
protein, E3BD, protein binding; 1.55A {Homo sapiens}
PDB: 2f5z_K
Length = 64
Score = 36.7 bits (84), Expect = 0.002
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYM 384
+P+ R +++ + +D + TG +G KED + +
Sbjct: 13 SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLV 48
Score = 28.6 bits (63), Expect = 1.5
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 565 DPNKIDTKELRGTGKQGRVLKEDIITYM-NSPSDETNPAHTAH 606
+ + +D + TG +G KED + + + + H H
Sbjct: 21 EKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKILEHHHHH 63
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
+V G + E +C +E+ K ++T+ GTV+ V+ GD G L+++E
Sbjct: 40 SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
+V G + E +C +E+ K ++T+ GTV+ V+ GD G L+++E
Sbjct: 40 SVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 36.1 bits (84), Expect = 0.005
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
V EG + V +E+ K I + G V KV E D G+ L+ I
Sbjct: 23 LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 36.1 bits (84), Expect = 0.005
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
V EG + V +E+ K I + G V KV E D G+ L+ I
Sbjct: 23 LVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 39.2 bits (92), Expect = 0.007
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V GA++ + +C + + K +TS +GTVRKV+ + +L+IE
Sbjct: 664 KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
Score = 39.2 bits (92), Expect = 0.007
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V GA++ + +C + + K +TS +GTVRKV+ + +L+IE
Sbjct: 664 KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
Score = 29.2 bits (66), Expect = 9.0
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Query: 186 KLIQFKLADIGE----GIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVT----ITS 237
K + K + + G R+V E NG + + + KA I +
Sbjct: 596 KTLHIKALAVSDLNRAGQRQVFF-ELNGQLRSILVKDTQAMKEMHFHPKALKDVKGQIGA 654
Query: 238 RYKGTVRKVYYGEGDVALVGKPLLDIE 264
G V + G G+PL +
Sbjct: 655 PMPGKVIDIKVVAGAKVAKGQPLCVLS 681
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 35.3 bits (82), Expect = 0.008
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I K E I + + W+ E + +E ++ ++E+DK + + + G + ++
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDE--LIVDIETDKVVMEVLAEADGVIAEIV 59
Query: 248 YGEGDVALVGKPLLDIE 264
EGD L G+ L +
Sbjct: 60 KNEGDTVLSGELLGKLT 76
Score = 35.3 bits (82), Expect = 0.010
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 456 GEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVAL 515
E I + + W+ E + +E ++ ++E+DK + + + G + ++ EGD L
Sbjct: 10 PESIADGTVATWHKKPGEAVKRDE--LIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVL 67
Query: 516 VGKPLLDIE 524
G+ L +
Sbjct: 68 SGELLGKLT 76
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 34.9 bits (81), Expect = 0.013
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+ + D+ E + + + W+ G + +V+ E+E+DK + + + G + V
Sbjct: 3 VDILVPDLPESVADATVATWHKKP--GDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Query: 248 YGEGDVALVGKPLLDIE 264
EG + L +
Sbjct: 61 EDEGTTVTSRQILGRLR 77
Score = 34.5 bits (80), Expect = 0.020
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 456 GEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVAL 515
E + + + W+ G + +V+ E+E+DK + + + G + V EG
Sbjct: 11 PESVADATVATWHKKP--GDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVT 68
Query: 516 VGKPLLDIE 524
+ L +
Sbjct: 69 SRQILGRLR 77
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 34.5 bits (80), Expect = 0.014
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 263
V G R+ + +E+ K I S G V+++ EG+ G+PL+++
Sbjct: 20 LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
Score = 34.5 bits (80), Expect = 0.014
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDI 523
V G R+ + +E+ K I S G V+++ EG+ G+PL+++
Sbjct: 20 LVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 38.0 bits (89), Expect = 0.016
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 267
V G + + +E+ K +I + + G V+ +Y EG++ G PL++++
Sbjct: 618 VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDENQ 674
Score = 38.0 bits (89), Expect = 0.016
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVED 527
V G + + +E+ K +I + + G V+ +Y EG++ G PL++++
Sbjct: 618 VEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDENQ 674
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 36.9 bits (86), Expect = 0.040
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V G + E +C +E+ K + + KG V K+ G+ V +++ E
Sbjct: 628 VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
Score = 36.9 bits (86), Expect = 0.040
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V G + E +C +E+ K + + KG V K+ G+ V +++ E
Sbjct: 628 VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 30.7 bits (70), Expect = 0.43
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 211 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
+ G ++N D +C VE+ K I + GTV+ + G +PL+ IE
Sbjct: 27 IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
Score = 30.7 bits (70), Expect = 0.43
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 471 VTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
+ G ++N D +C VE+ K I + GTV+ + G +PL+ IE
Sbjct: 27 IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 31.8 bits (72), Expect = 1.3
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 640 EEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGY 686
E + + I +N + P + ++ + + I G+
Sbjct: 272 EMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGF 318
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
nitrate assimilation, oxidoreductase; HET: MTV; 1.70A
{Pichia angusta}
Length = 424
Score = 31.7 bits (72), Expect = 1.4
Identities = 6/47 (12%), Positives = 16/47 (34%)
Query: 640 EEVDTTQLRDVKKEDIITYMNSPSDETNPAHTAHVREASNVIPIRGY 686
E + + I +N + P + ++ + + I G+
Sbjct: 222 EMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISEDEYEIAGF 268
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 31.1 bits (71), Expect = 1.6
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 986 VAFGKIQLLPRFDAEMRVVAKCILN--VTWAADHRV-----------VDGATVARAAT 1030
+A +I+ + A + VVA + W A ++ + AT
Sbjct: 42 IATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT 99
Score = 29.6 bits (67), Expect = 4.0
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 849 VAFGKIQLLPRFDAEMRIVAKCILN--VTWAADHRV-----------VDGATVARAAT 893
+A +I+ + A + +VA + W A ++ + AT
Sbjct: 42 IATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT 99
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 2.2
Identities = 24/110 (21%), Positives = 33/110 (30%), Gaps = 20/110 (18%)
Query: 524 EVEDEGVAAEEADSLDRKAAPGVSEVNTPDTS----------DQPNETLHKDPNKIDTKE 573
E + A +L+ K G S D P +K +I E
Sbjct: 750 ETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYKQVKQIAPAE 809
Query: 574 LRGTGKQGRVLKEDIITYMNSPSDETNPA---HTAHVREASNVISIRGYV 620
L G RV+ ++T E P T EA S+ G V
Sbjct: 810 LEGLLDLERVI---VVTGFA----EVGPWGSARTRWEMEAFGEFSLEGCV 852
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 30.2 bits (68), Expect = 3.6
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 211 VTEGARINEFDVVCEVESD-KASVTITSRYKGTVRKVY-YGEGDVALVGKPLLDIEVEDE 268
VT G V + + +R G + KVY GD G PLLD+ + D
Sbjct: 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDW 158
Query: 269 GVAAEE 274
A E
Sbjct: 159 VEAQSE 164
Score = 30.2 bits (68), Expect = 3.6
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 471 VTEGARINEFDVVCEVESD-KASVTITSRYKGTVRKVY-YGEGDVALVGKPLLDIEVEDE 528
VT G V + + +R G + KVY GD G PLLD+ + D
Sbjct: 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDW 158
Query: 529 GVAAEE 534
A E
Sbjct: 159 VEAQSE 164
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 29.7 bits (67), Expect = 6.0
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 211 VTEGARINEFDVVCEVESDKA-SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 269
T F++ +E+D A V + G + + GD G L I+ D
Sbjct: 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-- 92
Query: 270 VAAEEAD 276
+A +D
Sbjct: 93 LAQANSD 99
Score = 29.7 bits (67), Expect = 6.0
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 471 VTEGARINEFDVVCEVESDKA-SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 529
T F++ +E+D A V + G + + GD G L I+ D
Sbjct: 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-- 92
Query: 530 VAAEEAD 536
+A +D
Sbjct: 93 LAQANSD 99
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 29.6 bits (67), Expect = 6.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 269
V+ G + + E+ K TI + + G +++V GD + LL IE+E
Sbjct: 1092 KVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLL-IEIEKAT 1149
Score = 29.6 bits (67), Expect = 6.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIEVEDEG 529
V+ G + + E+ K TI + + G +++V GD + LL IE+E
Sbjct: 1092 KVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLL-IEIEKAT 1149
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 29.6 bits (67), Expect = 7.7
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
V+ G +N DV+ +E+ K I + GT+ +V GD L
Sbjct: 1110 FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164
Score = 29.6 bits (67), Expect = 7.7
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
V+ G +N DV+ +E+ K I + GT+ +V GD L
Sbjct: 1110 FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,878,115
Number of extensions: 1000961
Number of successful extensions: 1875
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1817
Number of HSP's successfully gapped: 126
Length of query: 1045
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 942
Effective length of database: 3,825,930
Effective search space: 3604026060
Effective search space used: 3604026060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)