RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6394
(1045 letters)
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
{Escherichia coli [TaxId: 562]}
Length = 233
Score = 152 bits (385), Expect = 2e-42
Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 5/222 (2%)
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
+P+ K + + + EA N+ L EV+ + D++ Q ++++ ++L +M F+
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+KA+ + +P +NASID ++++ + ++S+A+ T GLV P ++ V+ L + DI
Sbjct: 67 VKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
+++ + +GK+ D+ GG +++N G G + PII P Q I+ I+ P
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
++ ++ + + DHR++DG K LE+
Sbjct: 185 AV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLED 225
Score = 110 bits (277), Expect = 7e-28
Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
++++ + ++S+A+ T GLV P ++ V+ L + DI +++ + +GK+ D+ G
Sbjct: 87 DDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTG 146
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
G +++N G G + PII P Q I+ I+ P + ++ + + DHR
Sbjct: 147 GNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILP-MMYLALSYDHR 205
Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
++DG K L+E+P LL
Sbjct: 206 LIDGRESVGFLVTIKELLEDPTRLL 230
Score = 29.9 bits (67), Expect = 1.3
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 614 ISIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKKE 653
+ + K + + + EA N+ L EV+ + D++K+
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQ 47
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 127 bits (320), Expect = 8e-34
Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 25/204 (12%)
Query: 699 TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID 758
+ T ++D ++A + + K + P FI L+ M HP ++
Sbjct: 25 AQCTYNQTVQLD----------ITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMK 74
Query: 759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVL-PR 817
+++ + + + ++ S + C E P+
Sbjct: 75 --DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPK 132
Query: 818 DIQGGTISMSNVGNVGGTLVQPIIVPGQ---VCIVAFGKIQLLPRFDAEMRIVAKCILNV 874
+S V T + + GK + ++ ++ +
Sbjct: 133 GFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDKV----LMPL 183
Query: 875 TWAADHRVVDGATVARAATLWKSL 898
H V DG V R +
Sbjct: 184 AIQVHHAVCDGFHVGRMLNELQQY 207
Score = 96.1 bits (239), Expect = 6e-23
Identities = 16/145 (11%), Positives = 36/145 (24%), Gaps = 13/145 (8%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVL-PRDIQ 957
+++ + + + ++ S + C E P+
Sbjct: 76 GELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 135
Query: 958 GGTISMSNVGNVGGTLVQPIIV---PRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWA 1014
+S V T + + GK + +V ++ +
Sbjct: 136 ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKY-----YTQGDKV----LMPLAIQ 186
Query: 1015 ADHRVVDGATVARAATLWKSLVENP 1039
H V DG V R + +
Sbjct: 187 VHHAVCDGFHVGRMLNELQQYCDEW 211
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 128 bits (322), Expect = 8e-34
Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 4/222 (1%)
Query: 681 IPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFF 739
+ G + + K+M + +T P + L +E D T+L + + A+ EK KLT++P+
Sbjct: 17 EKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGI-KLTFLPYV 75
Query: 740 IKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDIT 799
+KAL + E+P+LN SID E I+ +NI IA DT GL+VP IK ++ + +
Sbjct: 76 VKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA 135
Query: 800 RELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPR 859
+E+ + + +GK+ P +++G + +++N+G+ GG P+I +V I+ G+I P
Sbjct: 136 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPI 195
Query: 860 FDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LEN 900
+ IVA +L ++ + DHR++DGAT +A K L +
Sbjct: 196 VR-DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSD 236
Score = 103 bits (258), Expect = 3e-25
Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
E I+ +NI IA DT GL+VP IK ++ + + +E+ + + +GK+ P +++G
Sbjct: 98 EEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKG 157
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHR 1018
+ +++N+G+ GG P+I +V I+ G+I P + +VA +L ++ + DHR
Sbjct: 158 ASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVR-DGEIVAAPMLALSLSFDHR 216
Query: 1019 VVDGATVARAATLWKSLVENPALLL 1043
++DGAT +A K L+ +P LLL
Sbjct: 217 MIDGATAQKALNHIKRLLSDPELLL 241
Score = 29.0 bits (64), Expect = 2.3
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 16/107 (14%)
Query: 614 ISIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKKEDIITYMNSPSDET------ 666
+ G + + K+M + +T P + L +E D T+L +K+ T
Sbjct: 17 EKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVV 76
Query: 667 ---------NPAHTAHVREASNVIPIRGYVKGMFKSMTEANTIPSLR 704
P + + + I + Y + T+ + +
Sbjct: 77 KALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVI 123
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 117 bits (294), Expect = 2e-30
Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 17/203 (8%)
Query: 699 TIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPFFIKALSLCMTEHPILNASID 758
LT ++D ++ L + + P I ++ + + L +I
Sbjct: 24 LPCGFSLTSKID----------ITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIK 73
Query: 759 PTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDITRELLRIQGCSHEGKVLPRD 818
+ ++V + + + + + L + L
Sbjct: 74 --DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQ 131
Query: 819 IQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLPRFDAEMRIVAKCILNVTWAA 878
+ N+ + + F I + ++ E + +L ++
Sbjct: 132 GVTPENHL-NISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQE---GDRLLLPLSVQV 187
Query: 879 DHRVVDGATVARAATLWKS-LEN 900
H V DG VAR + +
Sbjct: 188 HHAVCDGFHVARFINRLQELCNS 210
Score = 93.8 bits (233), Expect = 4e-22
Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 8/143 (5%)
Query: 899 ENILVNPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQG 958
+ ++V + + + + + L + L
Sbjct: 75 DELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134
Query: 959 GTISMSNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVV--AKCILNVTWAAD 1016
+ N+ + + P + +L ++
Sbjct: 135 PENHL-NISALPWVNFDSFNLNVAN-----FTDYFAPIITMAKYQQEGDRLLLPLSVQVH 188
Query: 1017 HRVVDGATVARAATLWKSLVENP 1039
H V DG VAR + L +
Sbjct: 189 HAVCDGFHVARFINRLQELCNSK 211
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 105 bits (262), Expect = 6e-26
Identities = 58/224 (25%), Positives = 112/224 (50%), Gaps = 4/224 (1%)
Query: 680 VIPIRGYVKGMFKSMTEA-NTIPSLRLTEEVDTTQLRDVKNQVSALYQEKFRLKLTYMPF 738
+P+ ++ ++ + +P + E D T+L + A EK +KLT +P
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKA-VAEKAGVKLTVLPL 75
Query: 739 FIKALSLCMTEHPILNASIDPTQENILVNPDHNISIAIDTKHGLVVPNIKSVNKLCLLDI 798
+KA + + E P N+S+ P+ + ++ +I A+DT GL+VP I++V++ LL +
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135
Query: 799 TRELLRIQGCSHEGKVLPRDIQGGTISMSNVGNVGGTLVQPIIVPGQVCIVAFGKIQLLP 858
E + + K+ +QG ++S++G++GGT PI+ +V I+ K + P
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQP 195
Query: 859 RFDAEMRIVAKCILNVTWAADHRVVDGATVARAATLWKS-LENI 901
+D + + +L ++ + D RV++GA AR L +I
Sbjct: 196 VWDGKA-FQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADI 238
Score = 83.0 bits (204), Expect = 4e-18
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 904 NPDHNISIAIDTKHGLVVPNIKSVNKLSLLDITRELLRIQGCSHEGKVLPRDIQGGTISM 963
+I A+DT GL+VP I++V++ SLL + E + + K+ +QG ++
Sbjct: 104 KKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTI 163
Query: 964 SNVGNVGGTLVQPIIVPRQVCIVAFGKIQLLPRFDAEMRVVAKCILNVTWAADHRVVDGA 1023
S++G++GGT PI+ +V I+ K + P +D + + +L ++ + D RV++GA
Sbjct: 164 SSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKA-FQPRLMLPLSLSYDCRVINGA 222
Query: 1024 TVARAATLWKSLVENPALLL 1043
AR L+ + +L
Sbjct: 223 AAARFTKRLGDLLADIRAIL 242
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 77.1 bits (190), Expect = 7e-18
Identities = 51/83 (61%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 186 KLIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 245
+++QFKL+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 246 VYYGEGDVALVGKPLLDIEVEDE 268
+YY D+A VGKPL+DIE E
Sbjct: 61 LYYNLDDIAYVGKPLVDIETEAL 83
Score = 75.6 bits (186), Expect = 2e-17
Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 446 KLIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRK 505
+++QF L+DIGEGIREV +KEW V EG +++FD +CEV+SDKASVTITSRY G ++K
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWY--VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKK 60
Query: 506 VYYGEGDVALVGKPLLDIEVEDE 528
+YY D+A VGKPL+DIE E
Sbjct: 61 LYYNLDDIAYVGKPLVDIETEAL 83
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 71.3 bits (175), Expect = 7e-16
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+FKL DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 2 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59
Query: 248 YGEGDVALVGKPLLDIEVE 266
EG VA VG+ L+ ++
Sbjct: 60 VPEGTVATVGQTLITLDAP 78
Score = 69.8 bits (171), Expect = 2e-15
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+F L DIGEGI E I +W V G +NE DV+CEV++DKA V I S KG V ++
Sbjct: 2 FEFKLPDIGEGIHEGEIVKWF--VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59
Query: 508 YGEGDVALVGKPLLDIEVE 526
EG VA VG+ L+ ++
Sbjct: 60 VPEGTVATVGQTLITLDAP 78
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 67.1 bits (164), Expect = 2e-14
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
I K E I + + W+ G + +++ ++E+DK + + + G + ++
Sbjct: 2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
Query: 248 YGEGDVALVGKPLLDIEVE 266
EGD L G+ L +
Sbjct: 60 KNEGDTVLSGELLGKLTEG 78
Score = 65.6 bits (160), Expect = 7e-14
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
I E I + + W+ G + +++ ++E+DK + + + G + ++
Sbjct: 2 IDIKAPTFPESIADGTVATWH--KKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
Query: 508 YGEGDVALVGKPLLDIEVE 526
EGD L G+ L +
Sbjct: 60 KNEGDTVLSGELLGKLTEG 78
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 67.1 bits (164), Expect = 2e-14
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+ + D+ E + + + W+ G + +V+ E+E+DK + + + G + V
Sbjct: 3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Query: 248 YGEGDVALVGKPLLDIEVED 267
EG + L + +
Sbjct: 61 EDEGTTVTSRQILGRLREGN 80
Score = 65.6 bits (160), Expect = 7e-14
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+ + D+ E + + + W+ G + +V+ E+E+DK + + + G + V
Sbjct: 3 VDILVPDLPESVADATVATWH--KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Query: 508 YGEGDVALVGKPLLDIEVED 527
EG + L + +
Sbjct: 61 EDEGTTVTSRQILGRLREGN 80
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 64.8 bits (158), Expect = 1e-13
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
L++ K+ DIG V+I V G I D + +E+DKA++ + + G V++V
Sbjct: 2 LVELKVPDIGG-HENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58
Query: 247 YYGEGDVALVGKPLLDIEVEDE 268
GD G ++ +E E
Sbjct: 59 KVKVGDKISEGGLIVVVEAEGT 80
Score = 62.9 bits (153), Expect = 6e-13
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
L++ + DIG V+I V G I D + +E+DKA++ + + G V++V
Sbjct: 2 LVELKVPDIGG-HENVDIIAVE--VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58
Query: 507 YYGEGDVALVGKPLLDIEVEDE 528
GD G ++ +E E
Sbjct: 59 KVKVGDKISEGGLIVVVEAEGT 80
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 64.5 bits (157), Expect = 3e-13
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 188 IQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 247
+Q L + + ++ W G +++E D++ E+E+DKA++ + +G + K+
Sbjct: 6 MQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63
Query: 248 YGEGDVAL-VGKPLLDIEVEDEGVAAEEADS 277
EG + +G PL I ++ ++A
Sbjct: 64 VPEGTRDVPLGTPLCIIVEKEADISAFADYR 94
Score = 63.0 bits (153), Expect = 1e-12
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 448 IQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVY 507
+Q L + + ++ W G +++E D++ E+E+DKA++ + +G + K+
Sbjct: 6 MQVLLPALSPTMTMGTVQRWE--KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63
Query: 508 YGEGDVAL-VGKPLLDIEVEDEGVAAEEADS 537
EG + +G PL I ++ ++A
Sbjct: 64 VPEGTRDVPLGTPLCIIVEKEADISAFADYR 94
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 61.4 bits (149), Expect = 2e-12
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 187 LIQFKLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 246
+ + + DIG EV + E V G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
Query: 247 YYGEGDVALVGKPLLDIEVEDE 268
GD G ++ EVE
Sbjct: 58 KVNVGDKVKTGSLIMIFEVEGA 79
Score = 60.2 bits (146), Expect = 6e-12
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 447 LIQFNLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKV 506
+ + N+ DIG EV + E V G ++ + VE DKAS+ + + + G V+++
Sbjct: 2 VKEVNVPDIGGD--EVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
Query: 507 YYGEGDVALVGKPLLDIEVEDE 528
GD G ++ EVE
Sbjct: 58 KVNVGDKVKTGSLIMIFEVEGA 79
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 56.8 bits (137), Expect = 8e-11
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 191 KLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 250
++ DIG + + E V G I + +ES KAS+ + S G V+ V
Sbjct: 5 RVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 251 GDVALVGKPLLDIEVED 267
GD G ++++E
Sbjct: 60 GDKLKEGDAIIELEPAA 76
Score = 55.3 bits (133), Expect = 3e-10
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 451 NLADIGEGIREVNIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGE 510
+ DIG + + E V G I + +ES KAS+ + S G V+ V
Sbjct: 5 RVPDIGG---DGEVIELL--VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 511 GDVALVGKPLLDIEVED 527
GD G ++++E
Sbjct: 60 GDKLKEGDAIIELEPAA 76
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 55.3 bits (134), Expect = 9e-11
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 345 KILATPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
+++A PSVR+ + +D + ++GTGK GRVLKEDI ++
Sbjct: 1 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 41
Score = 37.2 bits (87), Expect = 2e-04
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMN 593
+D + ++GTGK GRVLKEDI ++
Sbjct: 15 KGVDIRLVQGTGKNGRVLKEDIDAFLA 41
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide
succinyltransferase {Escherichia coli [TaxId: 562]}
Length = 39
Score = 47.9 bits (115), Expect = 4e-08
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 349 TPSVRRMIKHYEIDTKELRGTGKQGRVLKEDIITYMN 385
+P++RR++ + +D ++GTG GR+ +ED+ ++
Sbjct: 2 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 38
Score = 36.8 bits (86), Expect = 4e-04
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 567 NKIDTKELRGTGKQGRVLKEDIITYMN 593
+ +D ++GTG GR+ +ED+ ++
Sbjct: 12 HNLDASAIKGTGVGGRLTREDVEKHLA 38
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 44.1 bits (104), Expect = 2e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 203 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 262
+ + V EG + V +E+ K I + G V KV E D G+ L+
Sbjct: 18 TVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75
Query: 263 I 263
I
Sbjct: 76 I 76
Score = 44.1 bits (104), Expect = 2e-06
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 463 NIKEWNGNVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLD 522
+ + V EG + V +E+ K I + G V KV E D G+ L+
Sbjct: 18 TVSKIL--VKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75
Query: 523 I 523
I
Sbjct: 76 I 76
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 41.5 bits (97), Expect = 3e-05
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 210 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
+ G ++N D +C VE+ K I + GTV+ + G +PL+ IE
Sbjct: 26 FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
Score = 41.5 bits (97), Expect = 3e-05
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 470 NVTEGARINEFDVVCEVESDKASVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
+ G ++N D +C VE+ K I + GTV+ + G +PL+ IE
Sbjct: 26 FIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 28.9 bits (63), Expect = 3.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 232 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 264
+ + G + K + EG G+ L I+
Sbjct: 15 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQID 47
Score = 28.9 bits (63), Expect = 3.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 492 SVTITSRYKGTVRKVYYGEGDVALVGKPLLDIE 524
+ + G + K + EG G+ L I+
Sbjct: 15 IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQID 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,783,654
Number of extensions: 179865
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 40
Length of query: 1045
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 950
Effective length of database: 1,103,246
Effective search space: 1048083700
Effective search space used: 1048083700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)