Query psy6395
Match_columns 236
No_of_seqs 162 out of 471
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:47:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1619|consensus 100.0 6.1E-53 1.3E-57 374.4 17.8 178 26-235 15-192 (245)
2 PLN02810 carbon-monoxide oxyge 100.0 2.3E-52 4.9E-57 369.8 20.3 173 29-234 9-182 (231)
3 cd08762 Cyt_b561_CYBASC3 Verte 100.0 2.3E-52 4.9E-57 358.3 19.6 171 33-236 3-175 (179)
4 PLN02680 carbon-monoxide oxyge 100.0 5E-51 1.1E-55 361.9 20.3 175 27-235 8-183 (232)
5 PLN02351 cytochromes b561 fami 100.0 3.4E-50 7.3E-55 358.1 20.1 176 26-235 8-186 (242)
6 cd08765 Cyt_b561_CYBRD1 Verteb 100.0 7.9E-48 1.7E-52 323.2 17.7 150 54-236 1-152 (153)
7 cd08764 Cyt_b561_CG1275_like N 100.0 3.6E-48 7.8E-53 340.3 15.1 162 43-235 2-163 (214)
8 cd08766 Cyt_b561_ACYB-1_like P 100.0 1.1E-44 2.5E-49 301.1 17.1 142 60-234 2-143 (144)
9 cd08763 Cyt_b561_CYB561 Verteb 100.0 3.8E-44 8.3E-49 297.7 17.1 143 58-234 1-143 (143)
10 cd08554 Cyt_b561 Eukaryotic cy 100.0 2.6E-31 5.7E-36 213.2 15.2 131 65-227 1-131 (131)
11 PF03188 Cytochrom_B561: Eukar 100.0 1.8E-30 3.9E-35 208.0 15.9 135 68-234 1-137 (137)
12 cd08761 Cyt_b561_CYB561D2_like 100.0 9.1E-31 2E-35 221.8 14.7 136 63-230 18-158 (183)
13 smart00665 B561 Cytochrome b-5 100.0 5.1E-29 1.1E-33 200.0 14.5 128 68-227 1-129 (129)
14 cd08760 Cyt_b561_FRRS1_like Eu 99.9 3.6E-21 7.9E-26 163.5 13.1 133 62-231 32-164 (191)
15 PF10348 DUF2427: Domain of un 98.2 1.3E-05 2.9E-10 63.8 9.4 79 63-153 15-95 (105)
16 PF13301 DUF4079: Protein of u 97.1 0.013 2.8E-07 50.8 12.9 87 100-228 80-170 (175)
17 KOG4293|consensus 96.0 0.00024 5.2E-09 68.0 -6.0 125 68-228 214-340 (403)
18 PF03188 Cytochrom_B561: Eukar 96.0 0.12 2.6E-06 41.2 10.5 91 62-153 31-125 (137)
19 cd08760 Cyt_b561_FRRS1_like Eu 95.5 0.2 4.4E-06 42.6 10.7 90 63-153 66-155 (191)
20 smart00665 B561 Cytochrome b-5 94.2 0.25 5.4E-06 39.6 7.5 91 102-229 1-92 (129)
21 cd08554 Cyt_b561 Eukaryotic cy 93.7 0.81 1.7E-05 36.5 9.5 91 62-153 32-126 (131)
22 PF00033 Cytochrom_B_N: Cytoch 93.7 0.26 5.7E-06 40.3 6.7 104 98-229 7-127 (188)
23 PLN02680 carbon-monoxide oxyge 92.1 3.8 8.2E-05 37.3 12.4 125 64-189 78-215 (232)
24 cd08761 Cyt_b561_CYB561D2_like 91.9 1.1 2.3E-05 38.1 8.3 96 99-229 20-116 (183)
25 cd08763 Cyt_b561_CYB561 Verteb 89.5 2.7 5.8E-05 35.3 8.4 93 99-229 6-99 (143)
26 PF13706 PepSY_TM_3: PepSY-ass 87.9 0.58 1.3E-05 30.6 2.7 20 134-153 3-22 (37)
27 PF13172 PepSY_TM_1: PepSY-ass 86.8 1.6 3.4E-05 27.9 4.2 28 201-228 2-29 (34)
28 cd08764 Cyt_b561_CG1275_like N 86.7 14 0.0003 33.2 11.6 125 64-189 56-193 (214)
29 PF00033 Cytochrom_B_N: Cytoch 83.5 22 0.00048 28.8 12.4 76 130-231 97-176 (188)
30 PF13706 PepSY_TM_3: PepSY-ass 82.8 2.2 4.8E-05 27.8 3.6 29 201-229 1-29 (37)
31 PLN02351 cytochromes b561 fami 82.4 27 0.00058 32.1 11.6 123 63-189 81-218 (242)
32 cd08762 Cyt_b561_CYBASC3 Verte 80.3 33 0.00071 30.2 11.0 104 49-153 54-161 (179)
33 PF13703 PepSY_TM_2: PepSY-ass 78.3 16 0.00034 27.5 7.5 25 204-228 60-84 (88)
34 PLN02810 carbon-monoxide oxyge 77.1 58 0.0013 29.8 12.0 125 64-189 78-214 (231)
35 PF04238 DUF420: Protein of un 74.1 9.8 0.00021 31.6 5.8 24 205-228 104-127 (133)
36 PRK11513 cytochrome b561; Prov 71.8 29 0.00064 29.5 8.4 52 98-153 8-59 (176)
37 PF01292 Ni_hydr_CYTB: Prokary 71.8 53 0.0012 26.7 10.5 54 98-153 5-60 (182)
38 cd08766 Cyt_b561_ACYB-1_like P 68.7 63 0.0014 27.1 9.5 89 64-153 39-131 (144)
39 cd08765 Cyt_b561_CYBRD1 Verteb 62.3 92 0.002 26.6 9.5 102 51-153 33-138 (153)
40 COG3038 CybB Cytochrome B561 [ 60.2 35 0.00076 29.9 6.7 45 180-229 27-71 (181)
41 COG3038 CybB Cytochrome B561 [ 55.6 1E+02 0.0022 27.1 8.7 54 98-153 11-64 (181)
42 TIGR02125 CytB-hydogenase Ni/F 53.2 1.3E+02 0.0029 25.3 9.1 55 98-152 6-65 (211)
43 PF06197 DUF998: Protein of un 45.9 1.6E+02 0.0036 23.9 12.0 30 51-80 16-49 (184)
44 PF10348 DUF2427: Domain of un 45.7 1.5E+02 0.0033 23.5 10.7 93 94-231 12-104 (105)
45 PF03929 PepSY_TM: PepSY-assoc 44.9 46 0.001 20.6 3.6 24 205-228 2-25 (27)
46 PF01292 Ni_hydr_CYTB: Prokary 42.5 1.8E+02 0.004 23.5 15.9 74 131-230 93-169 (182)
47 PRK14992 tetrathionate reducta 39.3 3.5E+02 0.0076 25.8 10.9 20 104-123 50-69 (335)
48 PF13120 DUF3974: Domain of un 37.4 48 0.001 27.0 3.6 13 86-98 66-78 (126)
49 TIGR01583 formate-DH-gamm form 36.7 2.8E+02 0.006 23.9 13.6 71 130-228 99-171 (204)
50 KOG4085|consensus 36.0 1.1E+02 0.0024 26.6 5.8 56 15-87 18-73 (175)
51 PF01794 Ferric_reduct: Ferric 35.9 82 0.0018 23.8 4.7 21 203-223 32-52 (125)
52 TIGR00353 nrfE c-type cytochro 35.7 5.1E+02 0.011 26.6 14.2 17 210-226 300-316 (576)
53 KOG4050|consensus 32.4 1.8E+02 0.0039 25.8 6.6 48 102-153 75-125 (188)
54 PF13703 PepSY_TM_2: PepSY-ass 30.6 2.3E+02 0.005 21.1 6.7 55 99-153 16-78 (88)
55 PRK05419 putative sulfite oxid 30.2 3.8E+02 0.0083 23.6 11.2 24 131-154 69-92 (205)
56 PRK10639 formate dehydrogenase 29.1 3.8E+02 0.0083 23.2 14.0 73 129-228 101-173 (211)
57 PF09990 DUF2231: Predicted me 27.6 2.8E+02 0.0061 21.2 7.0 41 110-152 16-56 (104)
58 PRK10263 DNA translocase FtsK; 27.4 4E+02 0.0087 30.4 9.6 46 103-148 20-70 (1355)
59 COG1230 CzcD Co/Zn/Cd efflux s 26.1 5.6E+02 0.012 24.2 11.8 99 20-125 82-183 (296)
60 PF10067 DUF2306: Predicted me 25.6 70 0.0015 24.9 2.7 30 201-230 2-31 (103)
61 TIGR01583 formate-DH-gamm form 25.1 4.4E+02 0.0096 22.6 8.9 119 98-229 8-129 (204)
62 PF07457 DUF1516: Protein of u 24.6 3.7E+02 0.0081 21.6 7.6 52 96-151 29-80 (110)
63 PRK05419 putative sulfite oxid 23.3 5.2E+02 0.011 22.7 10.1 57 131-223 36-92 (205)
64 PF06664 MIG-14_Wnt-bd: Wnt-bi 23.2 5.7E+02 0.012 23.2 12.2 10 3-12 134-143 (298)
65 COG1295 Rbn Ribonuclease BN fa 22.3 6.2E+02 0.013 23.3 11.1 13 82-94 202-214 (303)
66 PF02628 COX15-CtaA: Cytochrom 21.9 6E+02 0.013 23.0 20.0 79 73-153 103-182 (302)
67 PF05660 DUF807: Coxiella burn 21.3 36 0.00078 28.7 0.4 22 5-26 71-95 (142)
68 PLN02631 ferric-chelate reduct 20.9 1.3E+02 0.0028 31.6 4.3 21 202-222 186-206 (699)
No 1
>KOG1619|consensus
Probab=100.00 E-value=6.1e-53 Score=374.44 Aligned_cols=178 Identities=38% Similarity=0.782 Sum_probs=174.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHH
Q psy6395 26 EYILVIVLSCLLLLAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTI 105 (236)
Q Consensus 26 ~~~~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~ 105 (236)
+|..+++++|++|+++++++++|+++||||++|+++|+..||+||++|++||+++.|||+|+||.+|+.+|+.+|.+|..
T Consensus 15 ~f~~~~~~s~l~G~i~v~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~ 94 (245)
T KOG1619|consen 15 RFLIIVVVSHLLGFITVVLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLG 94 (245)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHH
Q psy6395 106 LHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFF 185 (236)
Q Consensus 106 Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 185 (236)
+|+.|++++++|++++|++|| +.+++||||+|||+|+.++++|.+| |++||+
T Consensus 95 LH~~Alvl~i~gl~avf~~hn--~~~i~NfySLHSWlGl~~v~ly~~Q--------------------------~v~GF~ 146 (245)
T KOG1619|consen 95 LHIIALVLAIIGLCAVFDSHN--LVGIANFYSLHSWLGLCVVILYSLQ--------------------------WVFGFF 146 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hcCccceeeHHHHHHHHHHHHHHHH--------------------------HHHHHH
Confidence 999999999999999999999 7799999999999999999999999 999999
Q ss_pred HHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhcc
Q psy6395 186 SFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLTI 235 (236)
Q Consensus 186 sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~~ 235 (236)
+|++ ||.+++.|++++|+|+++|+.+|++|++||++|+.||++|+.
T Consensus 147 tfl~----pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek~~f~~ 192 (245)
T KOG1619|consen 147 TFLF----PGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEKLTFLC 192 (245)
T ss_pred HHhc----CCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 999999999999999999999999999999999999999864
No 2
>PLN02810 carbon-monoxide oxygenase
Probab=100.00 E-value=2.3e-52 Score=369.75 Aligned_cols=173 Identities=30% Similarity=0.662 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcccCCC-CCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHH
Q psy6395 29 LVIVLSCLLLLAALVLVIFWSIHYRGGYSWTE-DPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILH 107 (236)
Q Consensus 29 ~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~-~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq 107 (236)
.++.++|++|+++++++++|+.+||||++|++ +++++|||||+||++||+++++|||++||..|. +|+.+|.+|+++|
T Consensus 9 ~~~~~a~~lg~~~~vlvl~W~~~~rgG~aw~~~~~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~-~k~~~K~iH~~lh 87 (231)
T PLN02810 9 PLTFVAHALAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL-KKEVKKLIHLVLH 87 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCceeeehHHHHHHHHHHHhhHHHHHhhcccc-ccchHHHHHHHHH
Confidence 46688999999999999999999999999995 456799999999999999999999999999886 4778999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q psy6395 108 ALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSF 187 (236)
Q Consensus 108 ~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf 187 (236)
.+|++|+++|++++|+||| ++++|||||+|||+|++|+++|++| |+.||++|
T Consensus 88 ~~Al~l~vvGl~Avf~~Hn--~~~i~nlySLHSWlGl~tv~Lf~lQ--------------------------w~~Gf~~F 139 (231)
T PLN02810 88 AIALILGIFGICAAFKNHN--ESGIANLYSLHSWLGIGIISLYGIQ--------------------------WIYGFIVF 139 (231)
T ss_pred HHHHHHHHHHHHHHHHhcc--ccCCCceeeHHHHHHHHHHHHHHHH--------------------------HHHHHHHH
Confidence 9999999999999999999 7799999999999999999999999 99999999
Q ss_pred HHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhc
Q psy6395 188 LVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLT 234 (236)
Q Consensus 188 ~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~ 234 (236)
++ |+.+++.|++++|+|+++|+++|+++++|+++|+.||++|.
T Consensus 140 l~----P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl 182 (231)
T PLN02810 140 FF----PGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFL 182 (231)
T ss_pred hc----CCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999999999999999994
No 3
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=2.3e-52 Score=358.29 Aligned_cols=171 Identities=36% Similarity=0.685 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccc--cccchHHHHHHHHHHHH
Q psy6395 33 LSCLLLLAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRC--CRHIWVKLFHTILHALA 110 (236)
Q Consensus 33 ~s~~lgl~~i~Lv~~W~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~--~~k~~~k~~H~~Lq~lA 110 (236)
+..++|+++++++++|+.+||||++||++++ +|||||+||++||+++++|||++||..+. .+|+.+|.+|+++|.+|
T Consensus 3 ~~~~lg~~~~~lv~~W~~~~rgG~~w~~~~~-~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~A 81 (179)
T cd08762 3 LLGILGIACVVLVVHWNQMWRGGFAWDGSSK-NFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLA 81 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCCCC-ceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHH
Confidence 3457999999999999999999999997654 99999999999999999999999997764 37788899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 111 VPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVL 190 (236)
Q Consensus 111 ~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~ 190 (236)
++|+++|++++|+||| +.++||+||+|||+|++|+++|.+| |+.|+++|+.
T Consensus 82 l~~~vvGl~avf~~hn--~~~~~nlySlHSWlGl~t~~Lf~lQ--------------------------~~~Gf~~f~~- 132 (179)
T cd08762 82 FILTVIGLCAVFNFHN--VHHTANLYSLHSWVGICTVALFTCQ--------------------------WVMGFTSFLL- 132 (179)
T ss_pred HHHHHHHHHHHHHhcc--ccCccchhhHHHHHHHHHHHHHHHH--------------------------HHHHHHHHhc-
Confidence 9999999999999999 7799999999999999999999999 9999999999
Q ss_pred HhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhccC
Q psy6395 191 LCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLTIG 236 (236)
Q Consensus 191 l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~~~ 236 (236)
|+.+++.|++++|+|+++|+++|++|++|+++|+.||.+|+++
T Consensus 133 ---p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek~~f~~~ 175 (179)
T cd08762 133 ---PWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEKLFFSLK 175 (179)
T ss_pred ---CCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999874
No 4
>PLN02680 carbon-monoxide oxygenase
Probab=100.00 E-value=5e-51 Score=361.92 Aligned_cols=175 Identities=33% Similarity=0.615 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCC-CCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHH
Q psy6395 27 YILVIVLSCLLLLAALVLVIFWSIHYRGGYSWTE-DPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTI 105 (236)
Q Consensus 27 ~~~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~-~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~ 105 (236)
++..+ ++|++|+++++++++|+.+||||++|++ +++++|||||+||++||+++++||+++||+.|+ +|+.+|++|++
T Consensus 8 ~~~~~-~~~~~g~~~~~lv~~W~~~~rgG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~-~k~~~K~iH~~ 85 (232)
T PLN02680 8 FPIFM-LVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPG-TKNLKKLVHLT 85 (232)
T ss_pred ccHHH-HHHHHHHHHHHHHHHHHHHhCccccccCCCCcceEechHHHHHHHHHHHHHHHHhccccccc-cchhHHHHHHH
Confidence 44444 8999999999999999999999999986 456799999999999999999999999998875 57789999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHH
Q psy6395 106 LHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFF 185 (236)
Q Consensus 106 Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 185 (236)
+|.+|++|+++|++++|++|| ++++|||||+|||+|++|++++.+| |++|+.
T Consensus 86 L~~lA~~l~vvGl~avfk~hn--~~~~~nfySlHSWlGl~t~iL~~lQ--------------------------~~~Gf~ 137 (232)
T PLN02680 86 LQFLAFCLSLIGVWAALKFHN--EKGIDNFYSLHSWLGLACLFLFSLQ--------------------------WAAGFV 137 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHHH--------------------------HHHHHH
Confidence 999999999999999999999 7799999999999999999999999 999999
Q ss_pred HHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhcc
Q psy6395 186 SFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLTI 235 (236)
Q Consensus 186 sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~~ 235 (236)
+|++ |+.+++.|++++|+|+++|+++|+++++|+++|+.||.+|..
T Consensus 138 ~f~~----P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~ 183 (232)
T PLN02680 138 TFWY----PGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQ 183 (232)
T ss_pred HHHc----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 999889999999999999999999999999999999999964
No 5
>PLN02351 cytochromes b561 family protein
Probab=100.00 E-value=3.4e-50 Score=358.06 Aligned_cols=176 Identities=31% Similarity=0.568 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCC--CCccc-cccHHHHHHHHHHHHHHHhhhhhcccccccchHHHH
Q psy6395 26 EYILVIVLSCLLLLAALVLVIFWSIHYRGGYSWTED--PKRHF-NLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLF 102 (236)
Q Consensus 26 ~~~~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~~--~~~~F-~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~ 102 (236)
.+.+++.++|++|+++++++++|+.+||||++|+++ ++.+| ||||+||++||++++||||++||..|+. |+.+|.+
T Consensus 8 ~~~~~~~~a~~lGl~~~~lvl~W~~~~rgG~aw~~~~~~~~iffn~HP~lMviGfi~L~geAILvYR~~~~~-~k~~K~l 86 (242)
T PLN02351 8 SLLPLLLFARLSGLVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGS-RKTKKSV 86 (242)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCccceeecccHHHHHHHHHHHHHHHHHHhhccccc-chHHHHH
Confidence 456788999999999999999999999999999963 44477 7999999999999999999999999864 5568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHH
Q psy6395 103 HTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVV 182 (236)
Q Consensus 103 H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (236)
|+++|.+|++|+++|+++.++|++ +++|||||+|||+|++|+++|++| |+.
T Consensus 87 H~~Lh~~Ali~~vvGl~a~fh~~~---~~i~nlySLHSWlGl~tv~Lf~lQ--------------------------wv~ 137 (242)
T PLN02351 87 HLWLQGLALASGVFGIWTKFHGQD---GIVANFYSLHSWMGLICVSLFGAQ--------------------------WLT 137 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc---CCccchhHHHHHHHHHHHHHHHHH--------------------------HHH
Confidence 999999999999999999555443 247999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhcc
Q psy6395 183 GFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLTI 235 (236)
Q Consensus 183 Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~~ 235 (236)
||++|+. |+.++..|++++|+|+++|+++|+++++|+++|+.||.+|..
T Consensus 138 Gf~~F~~----P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~ 186 (242)
T PLN02351 138 GFMSFWH----RGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQ 186 (242)
T ss_pred HHHHHhc----CCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 999999999999999999999999999999999999999975
No 6
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=100.00 E-value=7.9e-48 Score=323.24 Aligned_cols=150 Identities=37% Similarity=0.704 Sum_probs=141.7
Q ss_pred CcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy6395 54 GGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRC--CRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPP 131 (236)
Q Consensus 54 gG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~--~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g 131 (236)
|||+||+++ +.|||||+||++||+++++||||+||..|. ++|+.+|++|+++|++|++|+++|++++|+||| +++
T Consensus 1 ~g~~w~~~~-~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn--~~~ 77 (153)
T cd08765 1 EGLGWDGGA-AEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHN--AKN 77 (153)
T ss_pred CCCCCCCCC-CeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccC
Confidence 799998654 599999999999999999999999996653 458899999999999999999999999999999 779
Q ss_pred CCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHH
Q psy6395 132 QPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASF 211 (236)
Q Consensus 132 ~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~ 211 (236)
+|||||+|||+|++|++++.+| |++|+.+|++ |+.+.+.|++++|+|+++
T Consensus 78 ~~~fySlHSwlGl~t~~l~~lQ--------------------------~~~Gf~~f~~----P~~~~~~r~~~~p~H~~~ 127 (153)
T cd08765 78 IPNMYSLHSWVGLAAVILYPLQ--------------------------LVLGISVYLL----PVAPVRLRAALMPLHVYS 127 (153)
T ss_pred CCccccHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHc----cCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999 998888999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhHhhccC
Q psy6395 212 GLITFMMAIATCLTGITQRVYLTIG 236 (236)
Q Consensus 212 G~~~f~laiaT~llGl~ek~~f~~~ 236 (236)
|+++|+++++|+++|+.||.+|++|
T Consensus 128 G~~i~~Lai~t~~lG~~ek~~f~~~ 152 (153)
T cd08765 128 GLFIFGTVIATALMGITEKLIFSLK 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999875
No 7
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=3.6e-48 Score=340.27 Aligned_cols=162 Identities=46% Similarity=0.861 Sum_probs=152.9
Q ss_pred HHHHHHhhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 43 VLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIY 122 (236)
Q Consensus 43 ~Lv~~W~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if 122 (236)
+++++|+.+||||++|++ |+.+|||||++|++||+++++||+++||..|..+|+.+|.+|+++|++|++|+++|++++|
T Consensus 2 ~l~~~W~~~~rgG~~~~~-~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf 80 (214)
T cd08764 2 VLVGIWLGKFRGGFSWTG-PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVF 80 (214)
T ss_pred EEEeehHHHcCCccccCC-CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999986 6789999999999999999999999999988778888899999999999999999999999
Q ss_pred hccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhh
Q psy6395 123 ENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRA 202 (236)
Q Consensus 123 ~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~ 202 (236)
++||.+++++|||||+|||+|++|++++.+| ++.|+++|++ |+.+++.|+
T Consensus 81 ~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ--------------------------~~~Gf~~fl~----P~~~~~~r~ 130 (214)
T cd08764 81 DSHNLAKPPIPNMYSLHSWLGLTAVILFSLQ--------------------------WVGGFVSFLF----PGLPETLRA 130 (214)
T ss_pred HHHhcccCCCCcccchHHHHHHHHHHHHHHH--------------------------HHHHHHHHHh----cccchHHHH
Confidence 9999444499999999999999999999999 9999999998 998888999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhHhhcc
Q psy6395 203 AMVPLHASFGLITFMMAIATCLTGITQRVYLTI 235 (236)
Q Consensus 203 ~~~p~H~~~G~~~f~laiaT~llGl~ek~~f~~ 235 (236)
+++|+|+++|+++|+++++|+++|+.||.+|..
T Consensus 131 ~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~ 163 (214)
T cd08764 131 AYLPLHVFFGLFIFVLAVATALLGITEKAFFSL 163 (214)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999974
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=1.1e-44 Score=301.14 Aligned_cols=142 Identities=36% Similarity=0.641 Sum_probs=135.8
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Q psy6395 60 EDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLH 139 (236)
Q Consensus 60 ~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlH 139 (236)
++|.++|||||+||++||+++++||+++||+.|. +|+.+|++|+++|.+|++|+++|++++|+||| ++++|||||+|
T Consensus 2 ~~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~-~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~--~~~~~~~~SlH 78 (144)
T cd08766 2 DNKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG-SREVQKAVHLTLHLVALVLGIVGIYAAFKFHN--EVGIPNLYSLH 78 (144)
T ss_pred CCCcceeeccHHHHHHHHHHHHHHHHHHhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCccccccHH
Confidence 5688999999999999999999999999998874 57888999999999999999999999999999 77999999999
Q ss_pred hHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHH
Q psy6395 140 SWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMA 219 (236)
Q Consensus 140 SwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~la 219 (236)
||+|++|++++.+| +++|+++|++ |+.+++.|++++|+|+++|+++|+++
T Consensus 79 SwlGl~t~~L~~lQ--------------------------~~~G~~~f~~----P~~~~~~r~~~~p~H~~~G~~~~~la 128 (144)
T cd08766 79 SWLGIGTISLFGLQ--------------------------WLFGFVTFWF----PGASRNTRAALLPWHVFLGLAIYYLA 128 (144)
T ss_pred HHHHHHHHHHHHHH--------------------------HHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999998 99988899999999999999999999
Q ss_pred HHHHHHHhHHhHhhc
Q psy6395 220 IATCLTGITQRVYLT 234 (236)
Q Consensus 220 iaT~llGl~ek~~f~ 234 (236)
++|+++|+.||.+|.
T Consensus 129 ~~t~~lGl~ek~~f~ 143 (144)
T cd08766 129 IATAETGLLEKLTFL 143 (144)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999885
No 9
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=100.00 E-value=3.8e-44 Score=297.67 Aligned_cols=143 Identities=34% Similarity=0.681 Sum_probs=136.6
Q ss_pred CCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Q psy6395 58 WTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYS 137 (236)
Q Consensus 58 w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~S 137 (236)
|| ++ ++|||||++|++||+++++||+++||..|+.+|+.+|++|+++|.+|++|+++|+.++|+||| ++++|||||
T Consensus 1 ~~-~~-~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~--~~~~~hf~S 76 (143)
T cd08763 1 WS-GP-LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQ--ANGYPDMYS 76 (143)
T ss_pred CC-CC-cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCcccc
Confidence 65 33 399999999999999999999999999998889999999999999999999999999999999 779999999
Q ss_pred hhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHH
Q psy6395 138 LHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFM 217 (236)
Q Consensus 138 lHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~ 217 (236)
+|||+|++|++++.+| ++.|+.+|++ |+..++.|++++|+|+++|+++|+
T Consensus 77 lHswlGl~t~~L~~lQ--------------------------~~~G~~~f~~----P~~~~~~r~~~~p~H~~~G~~~f~ 126 (143)
T cd08763 77 LHSWCGILTFVLYFLQ--------------------------WLIGFSFFLF----PGASFTLRSQYKPLHEFFGRALFL 126 (143)
T ss_pred HHHHHHHHHHHHHHHH--------------------------HHHHHHHHHc----CCCchHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999 9999999998 999889999999999999999999
Q ss_pred HHHHHHHHHhHHhHhhc
Q psy6395 218 MAIATCLTGITQRVYLT 234 (236)
Q Consensus 218 laiaT~llGl~ek~~f~ 234 (236)
++++|+++|+.||.+|+
T Consensus 127 la~~t~~lG~~ek~~f~ 143 (143)
T cd08763 127 SSVGTSLLGLTEKLLFN 143 (143)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999885
No 10
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.97 E-value=2.6e-31 Score=213.16 Aligned_cols=131 Identities=43% Similarity=0.700 Sum_probs=123.5
Q ss_pred cccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHH
Q psy6395 65 HFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGF 144 (236)
Q Consensus 65 ~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGl 144 (236)
.|||||++|++||+++++||++.+|..|...|+.+++.|+++|.++++++++|+.+++.||+ +++++||+|+|||+|+
T Consensus 1 ~f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl 78 (131)
T cd08554 1 EFNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGL 78 (131)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHH
Confidence 38999999999999999999999999887778889999999999999999999999999999 7799999999999999
Q ss_pred HHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6395 145 ITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCL 224 (236)
Q Consensus 145 it~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~l 224 (236)
++++++.+| ++.|+..++. |...++.|+..+++|+++|+++++++++|+.
T Consensus 79 ~~~~l~~~q--------------------------~~~G~~~~~~----~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~ 128 (131)
T cd08554 79 ATVLLFLLQ--------------------------FLSGFVLFLL----PLLRLSYRSSLLPFHRFFGLAIFVLAIATIL 128 (131)
T ss_pred HHHHHHHHH--------------------------HHHHHHHHHh----ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999887 8766667889999999999999999999999
Q ss_pred HHh
Q psy6395 225 TGI 227 (236)
Q Consensus 225 lGl 227 (236)
+|+
T Consensus 129 ~G~ 131 (131)
T cd08554 129 LGI 131 (131)
T ss_pred hcC
Confidence 985
No 11
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.97 E-value=1.8e-30 Score=208.05 Aligned_cols=135 Identities=33% Similarity=0.511 Sum_probs=125.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHH
Q psy6395 68 LHPSLMILGFITLSGFSMLLYRI--SRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFI 145 (236)
Q Consensus 68 ~HP~LM~lgfi~L~~~aiL~~r~--~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGli 145 (236)
|||+||++||++++|+|++.+|. .+..+|+.++++|.++|.++++|+++|+++++.+|+ +++++||+|+|||+|++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~H~~lG~~ 78 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKN--RNGKPHFKSWHSILGLA 78 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCCCCchhhhhHH
Confidence 79999999999999999999996 344567788999999999999999999999999999 67899999999999999
Q ss_pred HHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy6395 146 TVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLT 225 (236)
Q Consensus 146 t~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~ll 225 (236)
+++++.+| ++.|++.++. |+.+++.|..+.++|+.+|+++++++++|+.+
T Consensus 79 ~~~l~~~Q--------------------------~~~G~~~~~~----~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~ 128 (137)
T PF03188_consen 79 TFVLALLQ--------------------------PLLGFFRFFM----PGLPRKRRPIWNKWHRWLGYLIYVLAIATIFL 128 (137)
T ss_pred HHHHHHHH--------------------------HHHHHHHHcc----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999988887 88777888899999999999999999999999
Q ss_pred HhHHhHhhc
Q psy6395 226 GITQRVYLT 234 (236)
Q Consensus 226 Gl~ek~~f~ 234 (236)
|+.|+..|+
T Consensus 129 G~~~~~~f~ 137 (137)
T PF03188_consen 129 GLTEKAWFK 137 (137)
T ss_pred HHHHHHHhC
Confidence 999998875
No 12
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=9.1e-31 Score=221.83 Aligned_cols=136 Identities=30% Similarity=0.448 Sum_probs=123.6
Q ss_pred CccccccHHHHHHHHHHHHHHHhhhhhcccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchh
Q psy6395 63 KRHFNLHPSLMILGFITLSGFSMLLYRISRC---CRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLH 139 (236)
Q Consensus 63 ~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~---~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlH 139 (236)
+..|+|||++|++||+++++||++.+|..+. .+|+.+++.|+++|.++++|+++|+++++.||+ +++++||+|+|
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~--~~~~~hf~s~H 95 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKE--RNGKPHFTSWH 95 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCCCccchh
Confidence 4789999999999999999999998874322 367788999999999999999999999999999 77999999999
Q ss_pred hHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcch--hhhhhhhHHHHHHHHHHHH
Q psy6395 140 SWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATA--ACRAAMVPLHASFGLITFM 217 (236)
Q Consensus 140 SwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~--~~R~~~~p~H~~~G~~~f~ 217 (236)
||+|+++++++.+| ++.|+..++. |+..+ +.|+.++++|+++|+++++
T Consensus 96 ~~lGl~~~~l~~~Q--------------------------~~~G~~~~~~----~~~~~~~~~r~~~~~~H~~~G~~~~~ 145 (183)
T cd08761 96 GILGLVTVILIVLQ--------------------------ALGGLALLYP----PGLRRGESKAKKLKKYHRLSGYVAYL 145 (183)
T ss_pred HHHHHHHHHHHHHH--------------------------HHHhHHHHhh----HHHhcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999887 65543 6778999999999999999
Q ss_pred HHHHHHHHHhHHh
Q psy6395 218 MAIATCLTGITQR 230 (236)
Q Consensus 218 laiaT~llGl~ek 230 (236)
++++|+.+|+.|+
T Consensus 146 l~~~t~~lGl~~~ 158 (183)
T cd08761 146 LGLATLVLGLETR 158 (183)
T ss_pred HHHHHHHHhcCch
Confidence 9999999999883
No 13
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.96 E-value=5.1e-29 Score=200.04 Aligned_cols=128 Identities=38% Similarity=0.602 Sum_probs=118.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Q psy6395 68 LHPSLMILGFITLSGFSMLLYRI-SRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFIT 146 (236)
Q Consensus 68 ~HP~LM~lgfi~L~~~aiL~~r~-~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit 146 (236)
|||.+|++||++++|||++.+|. .+..+|+.++.+|+.+|.+|++|+++|+++++.+|+ +++++||+|+|||+|+++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~--~~~~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHN--ESGIANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCCCCccchhHHHHHHH
Confidence 79999999999999999999995 565677888999999999999999999999999999 678899999999999999
Q ss_pred HHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 147 VGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTG 226 (236)
Q Consensus 147 ~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llG 226 (236)
++++.+| ++.|++.+.. |+.+.+.|+.++++|+++|+++++++++|+.+|
T Consensus 79 ~~l~~~Q--------------------------~~~G~~~~~~----~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG 128 (129)
T smart00665 79 FVLAGLQ--------------------------WLSGFLRPLP----PGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLG 128 (129)
T ss_pred HHHHHHH--------------------------HHHHHHHhcC----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999 9999988766 666677889999999999999999999999998
Q ss_pred h
Q psy6395 227 I 227 (236)
Q Consensus 227 l 227 (236)
+
T Consensus 129 ~ 129 (129)
T smart00665 129 L 129 (129)
T ss_pred C
Confidence 5
No 14
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.86 E-value=3.6e-21 Score=163.47 Aligned_cols=133 Identities=19% Similarity=0.127 Sum_probs=116.2
Q ss_pred CCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Q psy6395 62 PKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSW 141 (236)
Q Consensus 62 ~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSw 141 (236)
++..+++|+.+|++||.+++|+|++.+|.++. +++.+.++|+.+|.++++++++|+..++.++ +.+.+|+++.|+|
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~-~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~~ 107 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL-GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHAI 107 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcchh
Confidence 46789999999999999999999999997643 3456788999999999999999999999987 2367899999999
Q ss_pred HHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy6395 142 MGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIA 221 (236)
Q Consensus 142 lGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laia 221 (236)
+|++++++..+| .+.|++ . |...++.|....++|++.|+++++++++
T Consensus 108 lGl~~~~l~~lQ--------------------------~~~G~~---~----~~~~~~~R~~~~~~H~~~G~~~~~l~~v 154 (191)
T cd08760 108 LGIIVLALAILQ--------------------------PLLGLL---R----PHPGSKKRSIWNWAHRWLGRAALILAIV 154 (191)
T ss_pred hhHHHHHHHHHH--------------------------HHHHHh---c----CCCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 999999999999 999983 2 4444446777899999999999999999
Q ss_pred HHHHHhHHhH
Q psy6395 222 TCLTGITQRV 231 (236)
Q Consensus 222 T~llGl~ek~ 231 (236)
|+.+|+.+..
T Consensus 155 ~i~~G~~~~~ 164 (191)
T cd08760 155 NIFLGLDLAG 164 (191)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 15
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=98.20 E-value=1.3e-05 Score=63.77 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=65.2
Q ss_pred CccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc--cchhh
Q psy6395 63 KRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHF--YSLHS 140 (236)
Q Consensus 63 ~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf--~SlHS 140 (236)
+...-.|-.+|+++|+++.|-++++-+. + .+.|...|.++.++.++|+......++ ..||+ .+.|+
T Consensus 15 ~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~-------sr~~~~~q~~~~~l~~~g~~~g~~~~~----~~p~lyp~n~H~ 82 (105)
T PF10348_consen 15 RSALYAHIVLMTLAWVILYPIGLVLGNA-R-------SRWHLPVQTVFLVLMILGLFLGSVYNG----STPDLYPNNAHG 82 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-------chHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCHHH
Confidence 4567899999999999999999986542 2 124999999999999999998655454 23555 79999
Q ss_pred HHHHHHHHHHHhh
Q psy6395 141 WMGFITVGLFGLQ 153 (236)
Q Consensus 141 wlGlit~~L~~lQ 153 (236)
.+|.+.+.+..+|
T Consensus 83 k~g~il~~l~~~q 95 (105)
T PF10348_consen 83 KMGWILFVLMIVQ 95 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999999
No 16
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=97.14 E-value=0.013 Score=50.76 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHH
Q psy6395 100 KLFHTILHALAVPCI----ALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINAL 175 (236)
Q Consensus 100 k~~H~~Lq~lA~~~~----~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~ 175 (236)
+..|.-+-...+..+ ..|....+.+.+ +-|.|.|=|.|+..+.+...+
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~------~lf~spH~~~Gl~~~~L~~~s---------------------- 131 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQNG------KLFWSPHLWAGLAVVGLMAFS---------------------- 131 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcCC------CCccCchHHHHHHHHHHHHHH----------------------
Confidence 556754433333333 333333444333 478999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 176 AMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 176 ~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ 228 (236)
.... +..++|.... .++.|...+.+.+.+-..-+.+|..
T Consensus 132 ----~al~------~~i~~g~~~~----~R~lHi~lN~~~l~Lf~~q~itG~~ 170 (175)
T PF13301_consen 132 ----AALV------PQIQKGNRPW----ARRLHIYLNSLALLLFAWQAITGWR 170 (175)
T ss_pred ----HHHH------HHHccCCchh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 1222444334 4489999999999999999999975
No 17
>KOG4293|consensus
Probab=95.98 E-value=0.00024 Score=68.01 Aligned_cols=125 Identities=18% Similarity=0.082 Sum_probs=100.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhcccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHH
Q psy6395 68 LHPSLMILGFITLSGFSMLLYRISRCCR--HIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFI 145 (236)
Q Consensus 68 ~HP~LM~lgfi~L~~~aiL~~r~~~~~~--k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGli 145 (236)
-|+++|.++...+++.+++.-|.++... ...+-.+|..+|..++.+...|....-..-+ .....-++.|.-+|+.
T Consensus 214 ~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~---~s~~~~~~~h~~~G~~ 290 (403)
T KOG4293|consen 214 THGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSN---ESDGTVYSAHTDLGII 290 (403)
T ss_pred cHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEcc---CCCceeeeecccchhH
Confidence 4999999999999999999999876531 2345789999999997777777766433222 1345779999999999
Q ss_pred HHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy6395 146 TVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLT 225 (236)
Q Consensus 146 t~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~ll 225 (236)
+.++-.+| ++..+ +. |....+.|...-.+|+..|+...+++++++.-
T Consensus 291 ~~~l~~lQ--------------------------~~~~l---~R----p~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~ 337 (403)
T KOG4293|consen 291 LLVLAFLQ--------------------------PLALL---LR----PLPESKIRRYWNWYHHLVGRLSIILGIVNIFD 337 (403)
T ss_pred HHHHHHHH--------------------------HHHHH---hc----CCcccCceeccceeeeecCcceeeehhhHHhh
Confidence 99999999 76665 23 66666777677789999999999999999998
Q ss_pred HhH
Q psy6395 226 GIT 228 (236)
Q Consensus 226 Gl~ 228 (236)
|+.
T Consensus 338 ~~~ 340 (403)
T KOG4293|consen 338 GLE 340 (403)
T ss_pred hHh
Confidence 875
No 18
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=95.97 E-value=0.12 Score=41.22 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred CCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCccc
Q psy6395 62 PKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFYS 137 (236)
Q Consensus 62 ~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~S 137 (236)
.+..+..|-.+|++|+++......+.+..-...+++.-+..|..+=..++++.. .|+..-+..+. .++.+|-+.-
T Consensus 31 ~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~-~~~~r~~~~~ 109 (137)
T PF03188_consen 31 RKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGL-PRKRRPIWNK 109 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCC-cccHHHHHHH
Confidence 356789999999999999888777777643332334447789887666665543 44444442111 1223456777
Q ss_pred hhhHHHHHHHHHHHhh
Q psy6395 138 LHSWMGFITVGLFGLQ 153 (236)
Q Consensus 138 lHSwlGlit~~L~~lQ 153 (236)
+|.+.|.++.++-..+
T Consensus 110 ~H~~~G~~~~~l~~~~ 125 (137)
T PF03188_consen 110 WHRWLGYLIYVLAIAT 125 (137)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999999
No 19
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.51 E-value=0.2 Score=42.60 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=61.9
Q ss_pred CccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Q psy6395 63 KRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWM 142 (236)
Q Consensus 63 ~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwl 142 (236)
+..|.+|-.+|++|+++.....++.+... ..+++.....|..+=...+.+.++=...-+..++..++.++-+...|.++
T Consensus 66 ~~~~~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~ 144 (191)
T cd08760 66 PVWFYLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWL 144 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHH
Confidence 46799999999999887665555555432 12333456788888776666666544443333332233467788999999
Q ss_pred HHHHHHHHHhh
Q psy6395 143 GFITVGLFGLQ 153 (236)
Q Consensus 143 Glit~~L~~lQ 153 (236)
|.++..+-..|
T Consensus 145 G~~~~~l~~v~ 155 (191)
T cd08760 145 GRAALILAIVN 155 (191)
T ss_pred HHHHHHHHHHH
Confidence 99999999999
No 20
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=94.24 E-value=0.25 Score=39.56 Aligned_cols=91 Identities=22% Similarity=0.298 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHH
Q psy6395 102 FHTILHALAVPC-IALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLF 180 (236)
Q Consensus 102 ~H~~Lq~lA~~~-~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (236)
.|.++..+|..+ .-.|+...-...+ ..+++....+|-++..++..+...= +
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~--~~~~~~~~~~H~~lq~~a~~~~~~g--------------------------~ 52 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTR--FLSKPTWFLLHVVLQILALVLGVIG--------------------------L 52 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhh--cccchHHHHHHHHHHHHHHHHHHHH--------------------------H
Confidence 388899999854 4455444332122 2255677899999988777776655 5
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 181 VVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 181 ~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
..++.+ .. +..+......|...|++++++.....+.|+..
T Consensus 53 ~~~~~~--------~~-~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~ 92 (129)
T smart00665 53 LAIFIS--------HN-ESGIANFYSLHSWLGLAAFVLAGLQWLSGFLR 92 (129)
T ss_pred HHHHHH--------cc-ccCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 555421 11 11123567889999999999999999999874
No 21
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=93.72 E-value=0.81 Score=36.53 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=60.5
Q ss_pred CCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCccc
Q psy6395 62 PKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFYS 137 (236)
Q Consensus 62 ~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~S 137 (236)
++..+.+|-.+++++++.......+.++.-...++..-+..|..+-.+++.+.. .|+..-+..++. ....+.+..
T Consensus 32 ~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~-~~~r~~~~~ 110 (131)
T cd08554 32 KRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLR-LSYRSSLLP 110 (131)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 446688999999999988776666666543222333446789888766666554 444443332220 112468899
Q ss_pred hhhHHHHHHHHHHHhh
Q psy6395 138 LHSWMGFITVGLFGLQ 153 (236)
Q Consensus 138 lHSwlGlit~~L~~lQ 153 (236)
.|.++|.++..+-..+
T Consensus 111 ~H~~~G~~~~~la~~t 126 (131)
T cd08554 111 FHRFFGLAIFVLAIAT 126 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988776
No 22
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=93.65 E-value=0.26 Score=40.28 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHH
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYE--NKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINAL 175 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~--~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~ 175 (236)
..+..||+.=.+-+.+.+.|+..-+. ......++......+|-++|++...+....
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~---------------------- 64 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLR---------------------- 64 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 45789999877777888888887632 111113355788999999999999888887
Q ss_pred HHHHHHHHHHH---------------HHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 176 AMVLFVVGFFS---------------FLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 176 ~~~~~~~Gf~s---------------f~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
.+.++.. ... ..+..+........+..+..-...+.+.++.++||+.-
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 65 ----ILWRLFSRRFWKSDDIWFRQIPQYR--LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp ----HHHHGGGT---GGGHHHHHSHHHHH--TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHhcCcchhhhhhHHHHHHHhh--ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 000 00111222334667888888899999999999999754
No 23
>PLN02680 carbon-monoxide oxygenase
Probab=92.11 E-value=3.8 Score=37.28 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=84.9
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCccchh
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFYSLH 139 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~SlH 139 (236)
..-..|-.++.+++++.......+++.-....+..-...|..+-...+++.. .|+..-+.-+. .+..++.+.-+|
T Consensus 78 ~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~-~~~~R~~~~p~H 156 (232)
T PLN02680 78 LKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGG-SRNSRASLLPWH 156 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCC-chHHHHHHHHHH
Confidence 3355899999999998877666677743322334456789888777666554 56655333222 111235577899
Q ss_pred hHHHHHHHHHHHhhc----cccc-----cccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 140 SWMGFITVGLFGLQA----SRIE-----FNDYSTWTQEGIIINALAMVLFVVGFFSFLV 189 (236)
Q Consensus 140 SwlGlit~~L~~lQ~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~ 189 (236)
-+.|..+..+-...+ .||. -+.|+++..|++-.|...++..++|....+.
T Consensus 157 ~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lvN~~gl~~~~fg~~V~~~ 215 (232)
T PLN02680 157 VFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLVNSLGILIVVLGGFVILA 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhHhHHHHHHHHHHHHHHHh
Confidence 999998887765542 1222 2478888899999999999999988876664
No 24
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=91.92 E-value=1.1 Score=38.14 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Q psy6395 99 VKLFHTILHALAVPCIALAALTIYENKNV-QDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAM 177 (236)
Q Consensus 99 ~k~~H~~Lq~lA~~~~~~G~~~if~~k~~-~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~ 177 (236)
....|..++.++..+..-..+..+...+. .+.+++.-..+|.++..+++.+...
T Consensus 20 ~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~------------------------- 74 (183)
T cd08761 20 LFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILA------------------------- 74 (183)
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHH-------------------------
Confidence 45789999999988666555554553221 0125566778999987766555443
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 178 VLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 178 ~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
|+..-+. .. .+.-++-..-+|..+|++++++.+...+.|+..
T Consensus 75 -----G~~~~~~----~~-~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 75 -----GLVAIYY----NK-ERNGKPHFTSWHGILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred -----HHHHHHH----hc-ccCCCCCccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 3322112 11 112234566799999999999999999999864
No 25
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=89.51 E-value=2.7 Score=35.32 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHH
Q psy6395 99 VKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMV 178 (236)
Q Consensus 99 ~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (236)
.-..|-.++.+++++...-...+|.... ..+++.-+-.|.+++++++++...
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~--~~~k~~~k~~H~~L~~la~~~~~~-------------------------- 57 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFR--NETKRSTKILHGLLHIMALVISLV-------------------------- 57 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhcccc--ccccchhHHHHHHHHHHHHHHHHH--------------------------
Confidence 4567999999998876666667775333 224455577999998877665443
Q ss_pred HHHHHHHH-HHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 179 LFVVGFFS-FLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 179 ~~~~Gf~s-f~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
|+.. |.. .. +.-+.-+.-+|.++|+.++++-....+.|+..
T Consensus 58 ----Gl~av~~~----h~--~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~ 99 (143)
T cd08763 58 ----GLVAVFDY----HQ--ANGYPDMYSLHSWCGILTFVLYFLQWLIGFSF 99 (143)
T ss_pred ----HHHHHHHH----cc--ccCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 121 21 12234678899999999999999999999855
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=87.86 E-value=0.58 Score=30.61 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=18.0
Q ss_pred CccchhhHHHHHHHHHHHhh
Q psy6395 134 HFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 134 hf~SlHSwlGlit~~L~~lQ 153 (236)
.+..+|.|+|+++-.++.+-
T Consensus 3 ~~~~~H~W~Gl~~g~~l~~~ 22 (37)
T PF13706_consen 3 ILRKLHRWLGLILGLLLFVI 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999988
No 27
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=86.78 E-value=1.6 Score=27.85 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 201 RAAMVPLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 201 R~~~~p~H~~~G~~~f~laiaT~llGl~ 228 (236)
|+....+|++.|+.+.+..+.-+++|..
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~ 29 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGAL 29 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999975
No 28
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=86.75 E-value=14 Score=33.16 Aligned_cols=125 Identities=21% Similarity=0.220 Sum_probs=81.1
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHHHH----HHHHHHHHhccCCCCCCCCCccc
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLLYRISRCC--RHIWVKLFHTILHALAVPCI----ALAALTIYENKNVQDPPQPHFYS 137 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~--~k~~~k~~H~~Lq~lA~~~~----~~G~~~if~~k~~~~~g~~hf~S 137 (236)
.....|-.+..+++++....-..+++..... .+..-...|..+-..++++. +.|+..-+.-+- .+..++...-
T Consensus 56 ~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~-~~~~r~~~~p 134 (214)
T cd08764 56 RLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGL-PETLRAAYLP 134 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHHHhH
Confidence 3456999999999998877655566533211 23334678988766665554 456655222111 1112344555
Q ss_pred hhhHHHHHHHHHHHhhc----ccccc---ccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 138 LHSWMGFITVGLFGLQA----SRIEF---NDYSTWTQEGIIINALAMVLFVVGFFSFLV 189 (236)
Q Consensus 138 lHSwlGlit~~L~~lQ~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~ 189 (236)
+|-..|+.+..+-...+ .||.. .+|++...|++..|...++..++|.+..+.
T Consensus 135 ~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N~~gl~~~~fg~~V~~~ 193 (214)
T cd08764 135 LHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGNFIGIVLVIFGGLVVYL 193 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999887655442 12111 248999999999999999999999876654
No 29
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=83.55 E-value=22 Score=28.82 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHH--HHHHHhcCC--cchhhhhhhh
Q psy6395 130 PPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFS--FLVLLCCEG--ATAACRAAMV 205 (236)
Q Consensus 130 ~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~s--f~~~l~~pg--~~~~~R~~~~ 205 (236)
++.+.+.....+.-........++ .+-|+.. +......+. .+...+....
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (188)
T PF00033_consen 97 PPSGKYNPLQKLVYWALYLLLLLM--------------------------AITGLIMLWFFWWPLPPWLLPPPGLAEWAR 150 (188)
T ss_dssp ----SS-HHHHHHHHHHHHHHHHH--------------------------HHHHHHC-----TTTTGGGS-HHHH-HHHH
T ss_pred CCcchhhhHHHHHHHHHHHHHHHH--------------------------HHHHHHHHhhhhcccchhhcCChHHHHHHH
Confidence 344566777777777777777777 8888755 000000011 1233456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhH
Q psy6395 206 PLHASFGLITFMMAIATCLTGITQRV 231 (236)
Q Consensus 206 p~H~~~G~~~f~laiaT~llGl~ek~ 231 (236)
.+|...+.++....++=+..++..+.
T Consensus 151 ~iH~~~~~ll~~~i~~Hi~~a~~~~~ 176 (188)
T PF00033_consen 151 LIHFILAYLLLAFIIIHIYAAIFHHF 176 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998888777776665543
No 30
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=82.85 E-value=2.2 Score=27.83 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 201 RAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 201 R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
|+.+..+|++.|+++-.+-..-+++|..-
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45788999999999999999999999653
No 31
>PLN02351 cytochromes b561 family protein
Probab=82.37 E-value=27 Score=32.10 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=80.7
Q ss_pred CccccccHHHHHHHHHHHHHHHhhhhhcccccc--cchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCcc
Q psy6395 63 KRHFNLHPSLMILGFITLSGFSMLLYRISRCCR--HIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFY 136 (236)
Q Consensus 63 ~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~--k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~ 136 (236)
+.....|-.+..+++++..- ++.. + +.+.+ +..-...|-.+-...+.+.. .|+.. |......+..++.+.
T Consensus 81 k~~K~lH~~Lh~~Ali~~vv-Gl~a-~-fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~-F~~P~~~~~~Ra~~~ 156 (242)
T PLN02351 81 KTKKSVHLWLQGLALASGVF-GIWT-K-FHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMS-FWHRGEMRTTRTTVL 156 (242)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHH-H-HhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCchhhHHHHh
Confidence 34678999999999887632 3333 2 22222 24456789877666655543 46666 554442222345666
Q ss_pred chhhHHHHHHHHHHHhhc----ccccc-----ccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 137 SLHSWMGFITVGLFGLQA----SRIEF-----NDYSTWTQEGIIINALAMVLFVVGFFSFLV 189 (236)
Q Consensus 137 SlHSwlGlit~~L~~lQ~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~ 189 (236)
-+|-..|+.+..+-...+ .||.. ..|++...|++-.|...++..++|....+.
T Consensus 157 P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~~Glliv~fG~~Vv~~ 218 (242)
T PLN02351 157 PWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNGLGLGLALLSGIVILA 218 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 799999998877654431 12222 479999999999999999999999655554
No 32
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=80.29 E-value=33 Score=30.15 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=69.4
Q ss_pred hhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH----HHHHHHHHhc
Q psy6395 49 SIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCI----ALAALTIYEN 124 (236)
Q Consensus 49 ~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~----~~G~~~if~~ 124 (236)
+..||-...|+.+.+.....|-.+..+++++-...-..+|+.-....+..-...|-.+-...+.+. +.|+.. |..
T Consensus 54 iL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~-f~~ 132 (179)
T cd08762 54 ALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTS-FLL 132 (179)
T ss_pred HHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 345775445543333456899999999999887766677775433334455678977766665554 356665 443
Q ss_pred cCCCCCCCCCccchhhHHHHHHHHHHHhh
Q psy6395 125 KNVQDPPQPHFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 125 k~~~~~g~~hf~SlHSwlGlit~~L~~lQ 153 (236)
+...+...+.+.-+|-..|+.+..+-..+
T Consensus 133 p~~~~~~ra~~~p~H~~~G~~if~Laiat 161 (179)
T cd08762 133 PWAPMWLRALVKPIHVFFGAMILVLSIAS 161 (179)
T ss_pred CCCchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 32112244677889999999999999999
No 33
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=78.30 E-value=16 Score=27.54 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 204 MVPLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 204 ~~p~H~~~G~~~f~laiaT~llGl~ 228 (236)
...+|+..|..+......-++||..
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~ 84 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLF 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999999999975
No 34
>PLN02810 carbon-monoxide oxygenase
Probab=77.12 E-value=58 Score=29.76 Aligned_cols=125 Identities=12% Similarity=0.050 Sum_probs=80.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCccchh
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFYSLH 139 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~SlH 139 (236)
..-..|..+..+++++-.-.-.-+++.-....+..-...|--+-...+.+.. .|+..-+.-+. .+.-++.+--+|
T Consensus 78 ~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~-~~~~R~~~lP~H 156 (231)
T PLN02810 78 VKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGG-STNLRSGSLPWH 156 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhHHHHHhHHH
Confidence 3456888888888887776666666644333445567788666555555543 45544222221 122345566789
Q ss_pred hHHHHHHHHHHHhhc----cccc----cccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 140 SWMGFITVGLFGLQA----SRIE----FNDYSTWTQEGIIINALAMVLFVVGFFSFLV 189 (236)
Q Consensus 140 SwlGlit~~L~~lQ~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~ 189 (236)
-..|+.+..+-..++ .||. .+.|+++..|++-.|...++..++|.+..+.
T Consensus 157 v~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~~Glliv~fg~~V~~~ 214 (231)
T PLN02810 157 VLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNFTAIITILYGAFVVLT 214 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 999888777655442 1221 2578889999999999999999999866554
No 35
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=74.13 E-value=9.8 Score=31.63 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 205 VPLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 205 ~p~H~~~G~~~f~laiaT~llGl~ 228 (236)
..-||-.|..++..=.-++.||..
T Consensus 104 ~~~Hrki~r~t~piWlyvsvTGvv 127 (133)
T PF04238_consen 104 FTRHRKIGRWTFPIWLYVSVTGVV 127 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888865
No 36
>PRK11513 cytochrome b561; Provisional
Probab=71.81 E-value=29 Score=29.53 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhh
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ 153 (236)
..+.+||..=++- +..+...+...+..++..+.++++|-.+|+++..+...-
T Consensus 8 ~~~~lHWl~a~li----~~~~~~~~~~~~~~~~~~~~~~~~H~s~G~~vl~L~v~R 59 (176)
T PRK11513 8 LQIGIHWLVFLLV----IVAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVR 59 (176)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999653222 222333333222111223457799999999999999988
No 37
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=71.77 E-value=53 Score=26.72 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc--cchhhHHHHHHHHHHHhh
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHF--YSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf--~SlHSwlGlit~~L~~lQ 153 (236)
..+..||+.=..-+.+.+.|...-...+.. ...... ..+|-+.|++...+...=
T Consensus 5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~--~~~~~~~~~~~H~~~G~~~~~~~~~~ 60 (182)
T PF01292_consen 5 FTRILHWLNALSFIALIATGLWIHFPPPGL--YFGDFGGVRNWHVIAGLLLFALLIFR 60 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccchHHhHHHHHHHHHHHHHHHH
Confidence 356789998777777777787765554441 111222 789999999888766544
No 38
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=68.70 E-value=63 Score=27.15 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=59.8
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccCCCCCCCCCccchh
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKNVQDPPQPHFYSLH 139 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~~~~~g~~hf~SlH 139 (236)
.....|-.++.+++++....-..+++.-....+..-...|..+-..++++.. .|+..-+.-+. .+..++...-+|
T Consensus 39 ~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~-~~~~r~~~~p~H 117 (144)
T cd08766 39 VQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGA-SRNTRAALLPWH 117 (144)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Confidence 3457999999999998887777777743222333456789888777666554 45554222221 111235666799
Q ss_pred hHHHHHHHHHHHhh
Q psy6395 140 SWMGFITVGLFGLQ 153 (236)
Q Consensus 140 SwlGlit~~L~~lQ 153 (236)
-+.|.++..+-.++
T Consensus 118 ~~~G~~~~~la~~t 131 (144)
T cd08766 118 VFLGLAIYYLAIAT 131 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999988
No 39
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=62.35 E-value=92 Score=26.57 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=65.5
Q ss_pred hccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH----HHHHHHHhccC
Q psy6395 51 HYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIA----LAALTIYENKN 126 (236)
Q Consensus 51 ~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~~k~~~k~~H~~Lq~lA~~~~~----~G~~~if~~k~ 126 (236)
.||.-..+..+.+..-..|-.++.++++.....-..+++.-....+..-...|..+-...+++.. .|+..-+.-..
T Consensus 33 ~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~ 112 (153)
T cd08765 33 VYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVA 112 (153)
T ss_pred HhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 45642222223344566999999999998876665566532222344557899888777776654 45555433221
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHhh
Q psy6395 127 VQDPPQPHFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 127 ~~~~g~~hf~SlHSwlGlit~~L~~lQ 153 (236)
.....+..+-+|-+.|..+..+-...
T Consensus 113 -~~~~r~~~~p~H~~~G~~i~~Lai~t 138 (153)
T cd08765 113 -PVRLRAALMPLHVYSGLFIFGTVIAT 138 (153)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234678889999999999998888
No 40
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=60.23 E-value=35 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 180 FVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 180 ~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
+..|...-.. |+.+ ..|..+..+|+.+|+.++++.+.=++..+.+
T Consensus 27 ~~~g~~~~~~----~~~~-~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~ 71 (181)
T COG3038 27 FALGELMGFL----PRGP-GLYFLLYELHKSIGILVLALMVLRLLWRLRN 71 (181)
T ss_pred HHHHHHHHHc----ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6666644444 5543 3566889999999999999998877766543
No 41
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=55.61 E-value=1e+02 Score=27.09 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhh
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ 153 (236)
....+||..-.+-+...+.|.+.....+. +..+-.++.+|=.+|+.+..+..+-
T Consensus 11 ~~i~lHWl~allv~~~~~~g~~~~~~~~~--~~~~~~~~~~Hks~Gi~vl~L~v~R 64 (181)
T COG3038 11 VQIALHWLMALLVIGAFALGELMGFLPRG--PGLYFLLYELHKSIGILVLALMVLR 64 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999877777777788877777666 4455689999999999999998877
No 42
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=53.17 E-value=1.3e+02 Score=25.27 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-C----CCCCccchhhHHHHHHHHHHHh
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYENKNVQD-P----PQPHFYSLHSWMGFITVGLFGL 152 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~-~----g~~hf~SlHSwlGlit~~L~~l 152 (236)
..+..||+.=..-+.+.+.|+.......+... + .......+|-++|++...+...
T Consensus 6 ~~R~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~ 65 (211)
T TIGR02125 6 PVRLFHWVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLF 65 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678998766666666777755322111000 0 0123568999999887766553
No 43
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=45.86 E-value=1.6e+02 Score=23.91 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=16.3
Q ss_pred hccCcccCCCCCCccc----cccHHHHHHHHHHH
Q psy6395 51 HYRGGYSWTEDPKRHF----NLHPSLMILGFITL 80 (236)
Q Consensus 51 ~~rgG~~w~~~~~~~F----~~HP~LM~lgfi~L 80 (236)
..++|++|.+++-+.. +.+..++-.++++.
T Consensus 16 ~~~p~ys~~~~~iS~Lg~~~~p~~~~~~~~~~~~ 49 (184)
T PF06197_consen 16 LLYPGYSPVRQYISDLGATGSPYAWLFNIGFILS 49 (184)
T ss_pred HhCCCCCHHHhHHHHHcCCCCCcHHHHHHHHHHH
Confidence 3568888776432222 44555665555543
No 44
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=45.75 E-value=1.5e+02 Score=23.46 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=55.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHH
Q psy6395 94 CRHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIIN 173 (236)
Q Consensus 94 ~~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~ 173 (236)
++++..-..|..++.+|.. ++.=+..+..+-+ .+||--.=.+
T Consensus 12 ~~~~~~l~~Hi~lm~la~~-il~Pi~lvL~~~~---------sr~~~~~q~~---------------------------- 53 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWV-ILYPIGLVLGNAR---------SRWHLPVQTV---------------------------- 53 (105)
T ss_pred CCchHHHHHHHHHHHHHHH-HHHHHHHHHHHcc---------chHHHHHHHH----------------------------
Confidence 4566778899999999954 4555555665443 2455433111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhH
Q psy6395 174 ALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRV 231 (236)
Q Consensus 174 ~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~ek~ 231 (236)
+.+..+.|++.... +.+...+. .-.-.|.-+|.+++.+.++-...|+..|.
T Consensus 54 --~~~l~~~g~~~g~~---~~~~~p~l--yp~n~H~k~g~il~~l~~~q~~~gv~~~~ 104 (105)
T PF10348_consen 54 --FLVLMILGLFLGSV---YNGSTPDL--YPNNAHGKMGWILFVLMIVQVILGVILKL 104 (105)
T ss_pred --HHHHHHHHHHHHHH---HhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11123344332211 12322111 01248999999999999999999998764
No 45
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=44.93 E-value=46 Score=20.58 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 205 VPLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 205 ~p~H~~~G~~~f~laiaT~llGl~ 228 (236)
..+|++++.+.-++-+..+++|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999974
No 46
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=42.46 E-value=1.8e+02 Score=23.51 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHH-hcC--CcchhhhhhhhHH
Q psy6395 131 PQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLL-CCE--GATAACRAAMVPL 207 (236)
Q Consensus 131 g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l-~~p--g~~~~~R~~~~p~ 207 (236)
+.+...+.......+...+..++ .+.|+..+.... .+| ............+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~v 146 (182)
T PF01292_consen 93 PAGKYNPGQKIVHWVLYLLLLLL--------------------------PITGLLLWFASAEGFPLFAASPGGAQIARSV 146 (182)
T ss_pred CCCcCChHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHhhcccCccccccchHHHHHHHH
Confidence 33444555555566667777777 888987655200 000 1134456688899
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHh
Q psy6395 208 HASFGLITFMMAIATCLTGITQR 230 (236)
Q Consensus 208 H~~~G~~~f~laiaT~llGl~ek 230 (236)
|.+.+.+..+..++=+...+.+.
T Consensus 147 H~~~a~~~i~~i~~Hv~~a~~~~ 169 (182)
T PF01292_consen 147 HFFLAWLLIAFIILHVYAALFHH 169 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998877776666665544
No 47
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=39.30 E-value=3.5e+02 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy6395 104 TILHALAVPCIALAALTIYE 123 (236)
Q Consensus 104 ~~Lq~lA~~~~~~G~~~if~ 123 (236)
...-.+|.++.++|...+.-
T Consensus 50 ~~a~llA~~~livg~l~L~~ 69 (335)
T PRK14992 50 NRALLIAVTCAITAPLALTA 69 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567888888999888664
No 48
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=37.42 E-value=48 Score=27.03 Aligned_cols=13 Identities=31% Similarity=0.240 Sum_probs=6.9
Q ss_pred hhhhcccccccch
Q psy6395 86 LLYRISRCCRHIW 98 (236)
Q Consensus 86 L~~r~~~~~~k~~ 98 (236)
+.||+.|.+.|+-
T Consensus 66 lfyrwirtegkke 78 (126)
T PF13120_consen 66 LFYRWIRTEGKKE 78 (126)
T ss_pred HHHHHHHhhchHH
Confidence 4467766544433
No 49
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=36.69 E-value=2.8e+02 Score=23.87 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=47.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchhhhhhhhHH
Q psy6395 130 PPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEG--ATAACRAAMVPL 207 (236)
Q Consensus 130 ~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg--~~~~~R~~~~p~ 207 (236)
|+..++...+-..-.....+..+| .+.|++.+.. .+|. .+.........+
T Consensus 99 p~~~kyN~~Qk~~y~~i~~~~~~~--------------------------~~TGl~m~~~--~~~~~~~~~~~~~~~~~~ 150 (204)
T TIGR01583 99 PSAGKYNAGQKSWYWILVLGGFLM--------------------------IITGIFMWFL--DFPSTAFSIELLRISALI 150 (204)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHH--HcccccCCHHHHHHHHHH
Confidence 345678888887777777777788 8999877642 1243 233333456789
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy6395 208 HASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 208 H~~~G~~~f~laiaT~llGl~ 228 (236)
|...+.+..++.++=+.+++.
T Consensus 151 H~~~a~l~~~~vi~Hiy~a~~ 171 (204)
T TIGR01583 151 HNFSAIILAVGFIVHIYMAVF 171 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999998877776665555544
No 50
>KOG4085|consensus
Probab=36.03 E-value=1.1e+02 Score=26.57 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCCcCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhh
Q psy6395 15 DDDELSGCNWMEYILVIVLSCLLLLAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLL 87 (236)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~ 87 (236)
.|+|....=|-+|. +.++|++...+.++.- =| ...+.||++|+.|..-.+...+++
T Consensus 18 ~dp~~~~pWw~r~l-----~rl~gilgaf~~~~fG-----vf-------~~ITls~~c~vAgvlqm~agfivl 73 (175)
T KOG4085|consen 18 ADPEAGMPWWYRWL-----CRLSGILGAFSCAIFG-----VF-------NCITLSPLCIVAGVLQMMAGFIVL 73 (175)
T ss_pred CCCCCCCcHHHHHH-----HHHHHHHHHHHHHHHH-----Hh-------hHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44555556677766 6666666655544432 12 346799999887766655554433
No 51
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=35.88 E-value=82 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q psy6395 203 AMVPLHASFGLITFMMAIATC 223 (236)
Q Consensus 203 ~~~p~H~~~G~~~f~laiaT~ 223 (236)
+...+||..|+..+.+++.=.
T Consensus 32 ~~~~~Hr~lg~~~~~~~~~H~ 52 (125)
T PF01794_consen 32 RLLRFHRWLGRLAFFLALLHG 52 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345599999999999887643
No 52
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=35.70 E-value=5.1e+02 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6395 210 SFGLITFMMAIATCLTG 226 (236)
Q Consensus 210 ~~G~~~f~laiaT~llG 226 (236)
..+-.+++.+..++++|
T Consensus 300 l~~n~ll~~~~~~Vl~G 316 (576)
T TIGR00353 300 LANNILLCAALLVVLLG 316 (576)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666666
No 53
>KOG4050|consensus
Probab=32.44 E-value=1.8e+02 Score=25.75 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH---HHHHHHHHHHhh
Q psy6395 102 FHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSW---MGFITVGLFGLQ 153 (236)
Q Consensus 102 ~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSw---lGlit~~L~~lQ 153 (236)
.|.++-+++++.++.+++-...++. .+..+..=|-| .|...+..+.+.
T Consensus 75 ~~iilglivvvlvi~~liwa~~~~a----~~krmr~~hp~~~l~gvllv~yfli~ 125 (188)
T KOG4050|consen 75 QDIILGLIVVVLVIGTLIWAASADA----NIKRMRTDHPLVTLAGVLLVGYFLIS 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH----HHHHHhhcCcHHHHHHHHHHHHHHHH
Confidence 4556666666665555555554443 23344444444 455555566665
No 54
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=30.61 E-value=2.3e+02 Score=21.12 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--ccCC------CCCCCCCccchhhHHHHHHHHHHHhh
Q psy6395 99 VKLFHTILHALAVPCIALAALTIYE--NKNV------QDPPQPHFYSLHSWMGFITVGLFGLQ 153 (236)
Q Consensus 99 ~k~~H~~Lq~lA~~~~~~G~~~if~--~k~~------~~~g~~hf~SlHSwlGlit~~L~~lQ 153 (236)
.+.+=.+.-.+.++..+.|++.-.. .|+. ..+++...+.+|..+|+.+.....+=
T Consensus 16 G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r~~~~~~~r~~~dlH~~~G~~~~~~ll~~ 78 (88)
T PF13703_consen 16 GRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLRPKRSKSKRRWFDLHRVLGLWFLPFLLVI 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccccCCCCccChHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666677777776542 1110 01112226789999999998877765
No 55
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=30.16 E-value=3.8e+02 Score=23.56 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=17.9
Q ss_pred CCCCccchhhHHHHHHHHHHHhhc
Q psy6395 131 PQPHFYSLHSWMGFITVGLFGLQA 154 (236)
Q Consensus 131 g~~hf~SlHSwlGlit~~L~~lQ~ 154 (236)
+.+....+|-++|+.+..+..+-+
T Consensus 69 ~~~~l~~~RR~LGl~af~~a~lH~ 92 (205)
T PRK05419 69 GQPLLIRTRRLLGLWAFFYATLHL 92 (205)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344678889999998887776664
No 56
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=29.06 E-value=3.8e+02 Score=23.20 Aligned_cols=73 Identities=7% Similarity=0.023 Sum_probs=44.9
Q ss_pred CCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHH
Q psy6395 129 DPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLH 208 (236)
Q Consensus 129 ~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H 208 (236)
.|+...+...+-..-+.......++ .+-|+..+. +..-+..+.........+|
T Consensus 101 ~p~~~kyN~~qk~~y~~~~~~~~~~--------------------------~iTGl~l~~-p~~~~~~~~~~~~~~~~~H 153 (211)
T PRK10639 101 VGDTGRYNFGQKCVFWAAIIFLVLL--------------------------LVSGVIIWR-PYFAPAFSIPVIRFALMLH 153 (211)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHH-HhhcccCChHHHHHHHHHH
Confidence 3455567777777766666666677 888886542 1110112333345667899
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy6395 209 ASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 209 ~~~G~~~f~laiaT~llGl~ 228 (236)
.....+..+..++=+.+.+.
T Consensus 154 ~~~a~~~i~~iivHiy~a~~ 173 (211)
T PRK10639 154 SFAAVALIVVIMVHIYAALW 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99888887776665555443
No 57
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=27.58 E-value=2.8e+02 Score=21.15 Aligned_cols=41 Identities=24% Similarity=0.484 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHh
Q psy6395 110 AVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGL 152 (236)
Q Consensus 110 A~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~l 152 (236)
+++.++.|......-+. +++..+--..|.++|+.+..++..
T Consensus 16 ~~~A~~~G~~d~~~~~~--~~~~~~~~~~H~~~~~~~~~l~~~ 56 (104)
T PF09990_consen 16 AIVAVLTGFVDLLTVER--GPPAHRVAWLHAILGLVALGLFLL 56 (104)
T ss_pred HHHHHHHHHHHHHhCcC--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333322 223344455666666666666554
No 58
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.44 E-value=4e+02 Score=30.40 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhccCCCCCCCCC---ccchhhHHHHHHHH
Q psy6395 103 HTILHALAVPCIALAALT--IYENKNVQDPPQPH---FYSLHSWMGFITVG 148 (236)
Q Consensus 103 H~~Lq~lA~~~~~~G~~~--if~~k~~~~~g~~h---f~SlHSwlGlit~~ 148 (236)
|...++++++|.++++.. .+.+.+-.|++-.+ -...|.|+|.+--.
T Consensus 20 rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~ 70 (1355)
T PRK10263 20 RRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAW 70 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHH
Confidence 445566666666666443 22333322544322 12357788775443
No 59
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=26.09 E-value=5.6e+02 Score=24.16 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=62.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCCCCCCccccccHHHHHHHHHHHHHHHhhhhhccccc---cc
Q psy6395 20 SGCNWMEYILVIVLSCLLLLAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCC---RH 96 (236)
Q Consensus 20 ~~~~~~~~~~~~~~s~~lgl~~i~Lv~~W~~~~rgG~~w~~~~~~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~---~k 96 (236)
.+++|.|+..+..+...+.+.++.+.+.|-...| |. +|... +. ...+.++.+-+..+..-.+...+.. ..
T Consensus 82 ~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R--~~---~P~~i-~~-~~ml~va~~GL~vN~~~a~ll~~~~~~~lN 154 (296)
T COG1230 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQR--LL---APPPI-HY-SGMLVVAIIGLVVNLVSALLLHKGHEENLN 154 (296)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc---CCCCC-Cc-cchHHHHHHHHHHHHHHHHHhhCCCcccch
Confidence 7799999999999999888888888888876655 21 12121 12 3455667766666655444443331 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6395 97 IWVKLFHTILHALAVPCIALAALTIYENK 125 (236)
Q Consensus 97 ~~~k~~H~~Lq~lA~~~~~~G~~~if~~k 125 (236)
...-..|..--+++-+.++++...++..+
T Consensus 155 ~r~a~LHvl~D~Lgsv~vIia~i~i~~~~ 183 (296)
T COG1230 155 MRGAYLHVLGDALGSVGVIIAAIVIRFTG 183 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22345777777777776666666666544
No 60
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.63 E-value=70 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q psy6395 201 RAAMVPLHASFGLITFMMAIATCLTGITQR 230 (236)
Q Consensus 201 R~~~~p~H~~~G~~~f~laiaT~llGl~ek 230 (236)
|++--.+||..|.+-..+.+.++++|+.-.
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~ 31 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIA 31 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345567999999999999888888887543
No 61
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=25.06 E-value=4.4e+02 Score=22.59 Aligned_cols=119 Identities=10% Similarity=-0.033 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Q psy6395 98 WVKLFHTILHALAVPCIALAALTIYENKNVQ---DPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINA 174 (236)
Q Consensus 98 ~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~---~~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~ 174 (236)
..+..||+.-..-+.+.+.|+...+...... ..+.+....+|-++|++.+.++..-+.+..-...|+ .=|+.
T Consensus 8 ~~r~~HW~~a~~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~i~~~~~~~~~~~~~----~~d~~- 82 (204)
T TIGR01583 8 FDRILHWIAAISFLILVFTGFVMMFGKFFWLGVILGELWVAKNLHPFAGILFFISIIPMFLKWWRRMIPA----KYDIR- 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHH-
Confidence 3467899987777778888887755421100 001234567899999988877765543321112222 11221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 175 LAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 175 ~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~~G~~~f~laiaT~llGl~e 229 (236)
+...+..|+. .+..+..-..++-|..+..-..++++.++.+++|+.-
T Consensus 83 -----~~~~~~~y~~---~~~~~~p~~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m 129 (204)
T TIGR01583 83 -----WMMKVGGYLS---KIKRPVPSAGKYNAGQKSWYWILVLGGFLMIITGIFM 129 (204)
T ss_pred -----HHHHhchHhc---CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111222222 0111111123577888888888888888888998754
No 62
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=24.56 E-value=3.7e+02 Score=21.57 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHH
Q psy6395 96 HIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFG 151 (236)
Q Consensus 96 k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~ 151 (236)
.+..|..|.++-..=++..+.|++...++-. +.|=.+..=..+|+.++.+.=
T Consensus 29 ~k~~k~~~MilRl~YlliiisG~~L~~~~~~----~~~~l~~iK~l~gl~vI~lmE 80 (110)
T PF07457_consen 29 TKKAKILHMILRLFYLLIIISGVWLFIRTFA----GNPMLYIIKMLLGLIVIGLME 80 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999999887422 345677888888887776653
No 63
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=23.29 E-value=5.2e+02 Score=22.75 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHH
Q psy6395 131 PQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHAS 210 (236)
Q Consensus 131 g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~~ 210 (236)
|.+-..+.--..|..+..++.++ ...+-..-.. + ...+.++||.
T Consensus 36 g~~p~~~~~~~tG~~Al~llll~--------------------------l~l~pL~~l~----~------~~~l~~~RR~ 79 (205)
T PRK05419 36 GADPVKDIEHFTGLWALVFLLAT--------------------------LAVTPLRRLT----G------QPLLIRTRRL 79 (205)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHc----C------CcHHHHHHHH
Confidence 44444566677888888888888 5554321111 1 1257889999
Q ss_pred HHHHHHHHHHHHH
Q psy6395 211 FGLITFMMAIATC 223 (236)
Q Consensus 211 ~G~~~f~laiaT~ 223 (236)
.|+..+..+..=.
T Consensus 80 LGl~af~~a~lH~ 92 (205)
T PRK05419 80 LGLWAFFYATLHL 92 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888876654
No 64
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=23.17 E-value=5.7e+02 Score=23.19 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=6.5
Q ss_pred hhhhhhhhhc
Q psy6395 3 LFLFCSRVRS 12 (236)
Q Consensus 3 ~~~~~~~~~~ 12 (236)
...++++.|+
T Consensus 134 wL~~~~~~r~ 143 (298)
T PF06664_consen 134 WLVFFDSLRM 143 (298)
T ss_pred HHHHHHHHhc
Confidence 3456777777
No 65
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=22.29 E-value=6.2e+02 Score=23.29 Aligned_cols=13 Identities=31% Similarity=0.153 Sum_probs=9.0
Q ss_pred HHHhhhhhccccc
Q psy6395 82 GFSMLLYRISRCC 94 (236)
Q Consensus 82 ~~aiL~~r~~~~~ 94 (236)
..-+++||..|+.
T Consensus 202 ~~f~~ly~~lP~~ 214 (303)
T COG1295 202 LGFFLLYRFLPNV 214 (303)
T ss_pred HHHHHHHHHcCCc
Confidence 4446789988765
No 66
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=21.86 E-value=6e+02 Score=22.99 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhhccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHH
Q psy6395 73 MILGFITLSGFSMLLYRISRCC-RHIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFG 151 (236)
Q Consensus 73 M~lgfi~L~~~aiL~~r~~~~~-~k~~~k~~H~~Lq~lA~~~~~~G~~~if~~k~~~~~g~~hf~SlHSwlGlit~~L~~ 151 (236)
....+++...++.+--...... ........|..+=.+.+.+...-........+ ..+.....+.-.+....+.++..
T Consensus 103 ~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~ 180 (302)
T PF02628_consen 103 ALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRPEE--SPRRLPRPRRLRWLAWAALVLVF 180 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc--cccccccchhHHHHHHHHHHHHH
Confidence 4444445555555443322222 23456778887644443333332222222211 11223333334444444455555
Q ss_pred hh
Q psy6395 152 LQ 153 (236)
Q Consensus 152 lQ 153 (236)
.|
T Consensus 181 ~q 182 (302)
T PF02628_consen 181 IQ 182 (302)
T ss_pred HH
Confidence 55
No 67
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=21.34 E-value=36 Score=28.71 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=18.2
Q ss_pred hhhhhhh---cccCCCCcCccchhh
Q psy6395 5 LFCSRVR---SYDDDDELSGCNWME 26 (236)
Q Consensus 5 ~~~~~~~---~~~~~~~~~~~~~~~ 26 (236)
-||+|+. +++++||.+...|..
T Consensus 71 ~fc~r~~K~v~Fty~Pens~fpwK~ 95 (142)
T PF05660_consen 71 TFCPRVTKAVKFTYEPENSDFPWKG 95 (142)
T ss_pred cccccceeeeEEEECCccCCCChhh
Confidence 4899995 778888888888875
No 68
>PLN02631 ferric-chelate reductase
Probab=20.94 E-value=1.3e+02 Score=31.56 Aligned_cols=21 Identities=10% Similarity=0.271 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q psy6395 202 AAMVPLHASFGLITFMMAIAT 222 (236)
Q Consensus 202 ~~~~p~H~~~G~~~f~laiaT 222 (236)
.+...+||+.|.++++++++=
T Consensus 186 e~~i~yHRWlGri~~~la~iH 206 (699)
T PLN02631 186 ESSIKYHIWLGHVSNFLFLVH 206 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888877653
Done!