Query psy6395
Match_columns 236
No_of_seqs 162 out of 471
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 16:47:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nei_A Hypothetical protein YO 29.3 19 0.00066 25.4 1.1 16 9-24 45-60 (60)
2 2lom_A HIG1 domain family memb 23.0 26 0.00089 26.5 0.0 57 64-123 22-84 (93)
3 2lon_A HIG1 domain family memb 18.7 37 0.0013 26.0 0.0 59 64-123 23-85 (99)
4 3bo0_B Preprotein translocase 9.7 3.2E+02 0.011 18.3 3.7 30 160-189 20-53 (65)
5 2lx0_A Membrane fusion protein 8.1 4.1E+02 0.014 16.1 3.2 21 33-53 9-29 (32)
6 3mp7_B Preprotein translocase 7.9 2.3E+02 0.0079 19.6 2.3 28 93-120 21-48 (61)
7 2ww9_B Protein transport prote 7.4 3.7E+02 0.013 19.7 3.3 31 90-120 35-65 (80)
8 1rh5_B Preprotein translocase 6.5 3.6E+02 0.012 19.3 2.9 30 91-120 23-52 (74)
9 2wwb_B SEC61gamma, protein tra 5.9 2.8E+02 0.0095 19.6 1.9 31 90-120 21-51 (68)
10 2lat_A Dolichyl-diphosphooligo 5.7 6.2E+02 0.021 16.0 3.3 19 30-48 7-25 (37)
No 1
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=29.26 E-value=19 Score=25.43 Aligned_cols=16 Identities=50% Similarity=1.093 Sum_probs=14.2
Q ss_pred hhhcccCCCCcCccch
Q psy6395 9 RVRSYDDDDELSGCNW 24 (236)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (236)
-||.||.|.|-+-|+|
T Consensus 45 iVrgYd~deetnVcgw 60 (60)
T 1nei_A 45 TVRSYDTENEHDVCGW 60 (60)
T ss_dssp HHHHTTSSSSSCSCCC
T ss_pred HHhcccccccccccCC
Confidence 4789999999999998
No 2
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=23.03 E-value=26 Score=26.54 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=34.1
Q ss_pred ccccccHHHHHHHHHHHHHHHhhh---hhcc-cccccchHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLL---YRIS-RCCRHIWVKLFH--TILHALAVPCIALAALTIYE 123 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~---~r~~-~~~~k~~~k~~H--~~Lq~lA~~~~~~G~~~if~ 123 (236)
+-+.-||+.- +|..... ++++ |+.. ++.++...|.+| ...|++++++.+.|.+.-..
T Consensus 22 rk~ke~Plvp-Ig~~~~~--~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~ 84 (93)
T 2lom_A 22 RKAKEAPFVP-VGIAGFA--AIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMY 84 (93)
Confidence 3456677655 3332221 2233 3333 345566677777 47899999999999876444
No 3
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=18.68 E-value=37 Score=26.00 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=34.4
Q ss_pred ccccccHHHHHHHHHHHHHH-Hhhhhhcc-cccccchHHHHH--HHHHHHHHHHHHHHHHHHHh
Q psy6395 64 RHFNLHPSLMILGFITLSGF-SMLLYRIS-RCCRHIWVKLFH--TILHALAVPCIALAALTIYE 123 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~-aiL~~r~~-~~~~k~~~k~~H--~~Lq~lA~~~~~~G~~~if~ 123 (236)
+-+.=||+.- +|.....+. ..-+|+.. ++.++...|.+| ...|++++++.+.|.+.-..
T Consensus 23 rk~ke~Plvp-Ig~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~ 85 (99)
T 2lon_A 23 RKTRESPLVP-IGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMY 85 (99)
Confidence 3455677655 343322211 12233432 445566677777 47899999999998877444
No 4
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=9.71 E-value=3.2e+02 Score=18.29 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=21.7
Q ss_pred ccCccc----chhHHHHHHHHHHHHHHHHHHHHH
Q psy6395 160 NDYSTW----TQEGIIINALAMVLFVVGFFSFLV 189 (236)
Q Consensus 160 ~~~~~~----~~~~~~~~~~~~~~~~~Gf~sf~~ 189 (236)
+.||+. .+-...+.....+..++|++.++.
T Consensus 20 V~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i 53 (65)
T 3bo0_B 20 VIWPTRKPTKDEYLAVAKVTALGISLLGIIGYII 53 (65)
T ss_dssp HSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567776 666666677777778888888776
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=8.11 E-value=4.1e+02 Score=16.11 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy6395 33 LSCLLLLAALVLVIFWSIHYR 53 (236)
Q Consensus 33 ~s~~lgl~~i~Lv~~W~~~~r 53 (236)
++.+.+++...-.++|...|.
T Consensus 9 iaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666789987663
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=7.90 E-value=2.3e+02 Score=19.61 Aligned_cols=28 Identities=4% Similarity=0.009 Sum_probs=17.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 93 CCRHIWVKLFHTILHALAVPCIALAALT 120 (236)
Q Consensus 93 ~~~k~~~k~~H~~Lq~lA~~~~~~G~~~ 120 (236)
-++|+.++-+-.+..+.++-..++|++-
T Consensus 21 ~~~KPd~~Ef~~iak~~~iG~~i~G~iG 48 (61)
T 3mp7_B 21 VTKKPNWATYKRAAKITGLGIILIGLIG 48 (61)
T ss_dssp HSCCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666777777666666654
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=7.41 E-value=3.7e+02 Score=19.70 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 90 ISRCCRHIWVKLFHTILHALAVPCIALAALT 120 (236)
Q Consensus 90 ~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~ 120 (236)
..+-++|..++-+-.+..+.++-++++|++-
T Consensus 35 vlk~~~KPdr~Ef~~iak~t~iG~~imG~IG 65 (80)
T 2ww9_B 35 FLAKCKKPDLKEYTKIVKAVGIGFIAVGIIG 65 (80)
T ss_dssp HHHSCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777877777888887777777654
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=6.51 E-value=3.6e+02 Score=19.34 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=19.8
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 91 SRCCRHIWVKLFHTILHALAVPCIALAALT 120 (236)
Q Consensus 91 ~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~ 120 (236)
.+-++|..++-+-.+..+.++-++++|++-
T Consensus 23 lk~~~KPdr~EF~~iak~~~iG~~imG~IG 52 (74)
T 1rh5_B 23 WLVLKKPTKDEYLAVAKVTALGISLLGIIG 52 (74)
T ss_dssp HHSEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677777777777777777766643
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=5.86 E-value=2.8e+02 Score=19.65 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=21.2
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 90 ISRCCRHIWVKLFHTILHALAVPCIALAALT 120 (236)
Q Consensus 90 ~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~~ 120 (236)
..+-++|..++-+-.+..+.++-+.++|++-
T Consensus 21 ~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IG 51 (68)
T 2wwb_B 21 LVKRCTKPDRKEFQKIAMATAIGFAIMGFIG 51 (68)
T ss_dssp HHHHCCCCCTHHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777777777777654
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=5.67 E-value=6.2e+02 Score=15.98 Aligned_cols=19 Identities=16% Similarity=0.525 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6395 30 VIVLSCLLLLAALVLVIFW 48 (236)
Q Consensus 30 ~~~~s~~lgl~~i~Lv~~W 48 (236)
+..++..+|+.+.+|++..
T Consensus 7 L~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456788898888877655
Done!