Query psy6395
Match_columns 236
No_of_seqs 162 out of 471
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 16:47:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neia_ d.253.1.1 (A:) Hypothe 27.1 10 0.00076 25.0 1.1 17 8-24 44-60 (60)
2 d1kqfc_ f.21.1.1 (C:) Formate 11.6 2.7E+02 0.02 20.3 12.6 71 130-227 103-173 (216)
3 d1q90b_ f.21.1.2 (B:) Cytochro 9.5 2.4E+02 0.018 21.9 5.7 23 206-228 112-134 (212)
4 d1nekd_ f.21.2.2 (D:) Succinat 6.9 2.3E+02 0.017 19.2 4.0 28 95-122 84-111 (113)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 6.8 4.2E+02 0.031 20.9 6.2 24 206-229 111-134 (261)
6 d1rh5b_ f.23.28.1 (B:) Preprot 6.0 2.1E+02 0.016 18.0 3.0 31 89-119 10-40 (56)
7 d1xmea1 f.24.1.1 (A:14-562) Ba 5.3 8.4E+02 0.061 20.9 8.7 54 64-117 54-110 (549)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 5.1 2.4E+02 0.018 15.8 2.5 14 39-52 13-26 (33)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 5.0 6.7E+02 0.048 19.3 6.3 20 209-228 99-118 (246)
10 d2d8xa2 g.39.1.3 (A:8-32) Pinc 4.1 89 0.0065 17.1 -0.0 4 67-70 19-22 (26)
No 1
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=27.07 E-value=10 Score=24.99 Aligned_cols=17 Identities=47% Similarity=1.046 Sum_probs=14.6
Q ss_pred hhhhcccCCCCcCccch
Q psy6395 8 SRVRSYDDDDELSGCNW 24 (236)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (236)
.-||.||.|.|-+-|+|
T Consensus 44 NiVRgYd~deetnVCGW 60 (60)
T d1neia_ 44 NTVRSYDTENEHDVCGW 60 (60)
T ss_dssp HHHHHTTSSSSSCSCCC
T ss_pred HHHhcCCccccccccCC
Confidence 34789999999999998
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=11.60 E-value=2.7e+02 Score=20.30 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=47.6
Q ss_pred CCCCCccchhhHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhHHHH
Q psy6395 130 PPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHA 209 (236)
Q Consensus 130 ~g~~hf~SlHSwlGlit~~L~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~sf~~~l~~pg~~~~~R~~~~p~H~ 209 (236)
++...+.....+.....+.....+ .+.|++.+.- ...+..+.........+|.
T Consensus 103 ~~~~~~n~~qkl~~~~~~~~~~~~--------------------------~~TGl~l~~~-~~~~~~~~~~~~~~~~iH~ 155 (216)
T d1kqfc_ 103 ADVGKYNAGQKMMFWSIMSMIFVL--------------------------LVTGVIIWRP-YFAQYFPMQVVRYSLLIHA 155 (216)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHH--------------------------HHHHHHTCTT-TTGGGSCHHHHHHHHHHHH
T ss_pred ccHHhhhHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHcc-chHHHHHHhHHHHHHHHHH
Confidence 345677888999988888888888 8888854331 0001113344456667999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy6395 210 SFGLITFMMAIATCLTGI 227 (236)
Q Consensus 210 ~~G~~~f~laiaT~llGl 227 (236)
..+.+.....++=+.+.+
T Consensus 156 ~~~~l~~~~vi~Hvy~a~ 173 (216)
T d1kqfc_ 156 AAGIILIHAILIHMYMAF 173 (216)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988888777776665554
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.54 E-value=2.4e+02 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy6395 206 PLHASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 206 p~H~~~G~~~f~laiaT~llGl~ 228 (236)
..--..|..++.+.++++.+|+.
T Consensus 112 e~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 112 ELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHhHHHHHHHHHHHHhhhh
Confidence 46678999999999999999985
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=6.86 E-value=2.3e+02 Score=19.24 Aligned_cols=28 Identities=4% Similarity=0.103 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6395 95 RHIWVKLFHTILHALAVPCIALAALTIY 122 (236)
Q Consensus 95 ~k~~~k~~H~~Lq~lA~~~~~~G~~~if 122 (236)
++..|+..........+.+++.|+.+++
T Consensus 84 ~~~~r~~~~~~~~~~~~~~~~~~i~~lw 111 (113)
T d1nekd_ 84 PLALRLMLQLVIVVALVVYVIYGFVVVW 111 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999988876
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.82 E-value=4.2e+02 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.420 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy6395 206 PLHASFGLITFMMAIATCLTGITQ 229 (236)
Q Consensus 206 p~H~~~G~~~f~laiaT~llGl~e 229 (236)
..--..|..++.+.++++.+|+.-
T Consensus 111 e~~W~~Gv~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 111 VTLWNVGVIIFILTIATAFLGYCC 134 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhhHHHHHHHHHHHHhhhhc
Confidence 456788999999999999999863
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.01 E-value=2.1e+02 Score=18.04 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=18.4
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHH
Q psy6395 89 RISRCCRHIWVKLFHTILHALAVPCIALAAL 119 (236)
Q Consensus 89 r~~~~~~k~~~k~~H~~Lq~lA~~~~~~G~~ 119 (236)
|..+-++|..++-+--+..+.|+-..+.|++
T Consensus 10 Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~G~I 40 (56)
T d1rh5b_ 10 RVWLVLKKPTKDEYLAVAKVTALGISLLGII 40 (56)
T ss_dssp HHHHSEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666666666666666665555554
No 7
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=5.27 E-value=8.4e+02 Score=20.90 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=32.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhhhccccc---ccchHHHHHHHHHHHHHHHHHHH
Q psy6395 64 RHFNLHPSLMILGFITLSGFSMLLYRISRCC---RHIWVKLFHTILHALAVPCIALA 117 (236)
Q Consensus 64 ~~F~~HP~LM~lgfi~L~~~aiL~~r~~~~~---~k~~~k~~H~~Lq~lA~~~~~~G 117 (236)
+.++.|...|+.+|......+...|-..|.. .......++..+-.++.++..++
T Consensus 54 ~~~T~Hg~~mif~f~~~~~~g~~~y~vp~~lg~r~~~~l~~~sfwl~~~g~vl~~~~ 110 (549)
T d1xmea1 54 QGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALP 110 (549)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999998887777666433221 11122334544555554444443
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.07 E-value=2.4e+02 Score=15.83 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhc
Q psy6395 39 LAALVLVIFWSIHY 52 (236)
Q Consensus 39 l~~i~Lv~~W~~~~ 52 (236)
++++....+|...+
T Consensus 13 il~l~ilvfw~gv~ 26 (33)
T d1xmec1 13 VLTLTILVFWLGVY 26 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455557887654
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.96 E-value=6.7e+02 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy6395 209 ASFGLITFMMAIATCLTGIT 228 (236)
Q Consensus 209 ~~~G~~~f~laiaT~llGl~ 228 (236)
-..|..++.+.++++.+|+.
T Consensus 99 w~~G~~l~~l~m~~af~GY~ 118 (246)
T d1ppjc2 99 WNIGVILLLTVMATAFMGYV 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHeecc
Confidence 45799999999999999985
No 10
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.07 E-value=89 Score=17.05 Aligned_cols=4 Identities=50% Similarity=1.149 Sum_probs=0.0
Q ss_pred cccH
Q psy6395 67 NLHP 70 (236)
Q Consensus 67 ~~HP 70 (236)
||||
T Consensus 19 ~whp 22 (26)
T d2d8xa2 19 SWHP 22 (26)
T ss_dssp EECT
T ss_pred cCCc
Done!