RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6395
(236 letters)
>gnl|CDD|176494 cd08764, Cyt_b561_CG1275_like, Non-vertebrate eumetazoan cytochrome
b(561). Cytochrome b(561), as found in non-vertebrate
eumetazoans, similar to the Drosophila melanogaster
CG1275 gene product. This protein might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), such as associated with the transport
of iron from the endosome to the cytoplasm. It is
assumed that this protein uses ascorbate as the electron
donor. Belongs to the cytochrome b(561) family, which
are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 214
Score = 140 bits (355), Expect = 2e-41
Identities = 75/195 (38%), Positives = 102/195 (52%), Gaps = 31/195 (15%)
Query: 42 LVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKL 101
+VLV W +RGG+SWT P FN HP LM+LG I L G S+L+YR+ R R +KL
Sbjct: 1 VVLVGIWLGKFRGGFSWT-GPGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKL 59
Query: 102 FHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFND 161
H +LH LA + ++++ N+ PP P+ YSLHSW+G V LF LQ
Sbjct: 60 LHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQ-------- 111
Query: 162 YSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIA 221
+V GF SFL G RAA +PLH FGL F++A+A
Sbjct: 112 ------------------WVGGFVSFLF----PGLPETLRAAYLPLHVFFGLFIFVLAVA 149
Query: 222 TCLTGITQRVYLTIG 236
T L GIT++ + ++
Sbjct: 150 TALLGITEKAFFSLN 164
>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561. Cytochrome
b561 is a secretory vesicle-specific electron transport
protein. It is an integral membrane protein, that binds
two heme groups non-covalently. This is a eukaryotic
family. Members of the 'prokaryotic cytochrome b561'
family can be found in Pfam: PF01292.
Length = 137
Score = 112 bits (283), Expect = 1e-31
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 34/165 (20%)
Query: 68 LHPSLMILGFITLSGFSMLLYRIS--RCCRHIWVKLFHTILHALAVPCIALAALTIYENK 125
HP LM+LGFI L G ++L+YR S R KL H +LH LA+ + L +++
Sbjct: 1 WHPVLMVLGFIFLMGEAILVYRSSLTRRLSKKTKKLLHWVLHLLALILGVVGLLAVFKFH 60
Query: 126 NVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFF 185
N PHFYSLHSW+G TV LF LQ ++ GF
Sbjct: 61 NELG--IPHFYSLHSWLGLTTVILFLLQ--------------------------WLSGFA 92
Query: 186 SFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQR 230
FL G + + R+ ++P H FGL+ F++AI T L G+ ++
Sbjct: 93 LFL----FPGLSRSIRSLLLPWHVFFGLVIFVLAIVTALLGLLEK 133
>gnl|CDD|176496 cd08766, Cyt_b561_ACYB-1_like, Plant cytochrome b(561), including
the carbon monoxide oxygenase ACYB-1. Cytochrome
b(561), as found in plants, similar to the Arabidopsis
thaliana ACYB-1 gene product, a cytochrome b561 isoform
localized to the tonoplast. This protein might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), and might be capable of trans-membrane
electron transport from intracellular ascorbate to
extracellular ferric chelates. It is assumed that this
protein uses ascorbate as the electron donor. Belongs to
the cytochrome b(561) family, which are secretory
vesicle-specific electron transport proteins.
Cytochromes b(561) are integral membrane proteins that
bind two heme groups non-covalently, and may have six
alpha-helical trans-membrane segments.
Length = 144
Score = 95.5 bits (238), Expect = 7e-25
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 35/172 (20%)
Query: 61 DPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALT 120
+ FN+HP LM++GFI L+G ++L Y+ R + K H LH +A + L +
Sbjct: 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREV-QKAVHLTLHLVA---LVLGIVG 58
Query: 121 IYEN-KNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVL 179
IY K + P+ YSLHSW+G T+ LFGLQ W
Sbjct: 59 IYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQ-----------W-------------- 93
Query: 180 FVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRV 231
+ GF +F GA+ RAA++P H GL + +AIAT TG+ +++
Sbjct: 94 -LFGFVTFWF----PGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEKL 140
>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561). Cytochrome b(561)
is a family of endosomal or secretory vesicle-specific
electron transport proteins. They are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments. This
is an exclusively eukaryotic family. Members of the
prokaryotic cytochrome b561 family are not deemed
homologous.
Length = 131
Score = 94.7 bits (236), Expect = 9e-25
Identities = 57/163 (34%), Positives = 78/163 (47%), Gaps = 32/163 (19%)
Query: 65 HFNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYEN 124
FN HP LM++GF+ L G ++L+YR+ R +KL H ILH LA + L ++
Sbjct: 1 EFNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLF 60
Query: 125 KNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGF 184
N + YSLHSW+G TV LF LQ F+ GF
Sbjct: 61 HN--AGGIANLYSLHSWLGLATVLLFLLQ--------------------------FLSGF 92
Query: 185 FSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGI 227
FL+ L R++++P H FGL F++AIAT L GI
Sbjct: 93 VLFLLPLLRLS----YRSSLLPFHRFFGLAIFVLAIATILLGI 131
>gnl|CDD|215365 PLN02680, PLN02680, carbon-monoxide oxygenase.
Length = 232
Score = 89.9 bits (223), Expect = 6e-22
Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 42/207 (20%)
Query: 30 VIVLSCLLLLAALVLVIFWSIHYRGGYSWTEDPKRH-FNLHPSLMILGFITLSGFSMLLY 88
+ +L LL + LV+ W++HYRGG + + D K FN+HP LM++G + L+G +ML Y
Sbjct: 10 IFMLVRLLGVIVAALVLTWTVHYRGGLALSSDNKDLIFNVHPVLMVIGLVLLNGEAMLAY 69
Query: 89 RISRCCRHIWVKLFHTILHALAVPCIAL----AALTIYENKNVQDPPQPHFYSLHSWMGF 144
+ +++ KL H L LA C++L AAL + K + +FYSLHSW+G
Sbjct: 70 KTVPGTKNL-KKLVHLTLQFLAF-CLSLIGVWAALKFHNEKGID-----NFYSLHSWLGL 122
Query: 145 ITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAM 204
+ LF LQ + GF +F G + RA++
Sbjct: 123 ACLFLFSLQ--------------------------WAAGFVTFWY----PGGSRNSRASL 152
Query: 205 VPLHASFGLITFMMAIATCLTGITQRV 231
+P H FG+ + +A+AT TGI ++
Sbjct: 153 LPWHVFFGIYIYALAVATATTGILEKA 179
>gnl|CDD|178406 PLN02810, PLN02810, carbon-monoxide oxygenase.
Length = 231
Score = 87.2 bits (216), Expect = 6e-21
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 36/197 (18%)
Query: 37 LLLAALVLVIFWSIHYRGGYSWTEDPKRH-FNLHPSLMILGFITLSGFSMLLYRISRCCR 95
L + ++V+ WSI+YRGG +W K FNLHP LM++G I + G +++ Y+ +
Sbjct: 17 LAVIGAIMVLVWSIYYRGGLAWEATNKNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK 76
Query: 96 HIWVKLFHTILHALAVPCIALAALTIYEN-KNVQDPPQPHFYSLHSWMGFITVGLFGLQA 154
+ KL H +LHA+A + L I KN + + YSLHSW+G + L+G+Q
Sbjct: 77 EV-KKLIHLVLHAIA---LILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQ- 131
Query: 155 SRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLI 214
W F+V FF G + R+ +P H FGL
Sbjct: 132 ----------WIYG-----------FIVFFFP--------GGSTNLRSGSLPWHVLFGLF 162
Query: 215 TFMMAIATCLTGITQRV 231
+++A+ G +++
Sbjct: 163 VYILAVGNAALGFLEKL 179
>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane
domain. Cytochrome b-561 recycles ascorbate for the
generation of norepinephrine by
dopamine-beta-hydroxylase in the chromaffin vesicles of
the adrenal gland. It is a transmembrane heme protein
with the two heme groups being bound to conserved
histidine residues. A cytochrome b-561 homologue, termed
Dcytb, is an iron-regulated ferric reductase in the
duodenal mucosa. Other homologues of these are also
likely to be ferric reductases. SDR2 is proposed to be
important in regulating the metabolism of iron in the
onset of neurodegenerative disorders.
Length = 129
Score = 84.2 bits (209), Expect = 9e-21
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 33/161 (20%)
Query: 68 LHPSLMILGFITLSGFSMLLYRI-SRCCRHIWVKLFHTILHALAVPCIALAALTIYENKN 126
LHP LMILGF L G ++L+ R +R L H +L LA+ + L I+ + N
Sbjct: 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHN 60
Query: 127 VQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFS 186
+ +FYSLHSW+G L GLQ ++ GF
Sbjct: 61 --ESGIANFYSLHSWLGLAAFVLAGLQ--------------------------WLSGFLR 92
Query: 187 FLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGI 227
G + R+ + P H GL F++AI T G+
Sbjct: 93 P----LPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129
>gnl|CDD|176492 cd08762, Cyt_b561_CYBASC3, Vertebrate cytochrome b(561), CYBASC3
gene product. Cytochrome b ascorbate-dependent 3, as
found in vertebrates, which might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), such as associated with the transport
of iron from the endosome to the cytoplasm. It is
assumed that this protein uses ascorbate as the electron
donor. Belongs to the cytochrome b(561) family, which
are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 179
Score = 84.1 bits (208), Expect = 3e-20
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 39/207 (18%)
Query: 35 CLLL----LAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRI 90
CLLL +A +VLV+ W+ +RGG++W + ++FN HP LM+ G + L G + L+YRI
Sbjct: 1 CLLLGILGIACVVLVVHWNQMWRGGFAW-DGSSKNFNWHPVLMVTGMVVLYGNAALVYRI 59
Query: 91 SRCCRH--IWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVG 148
+ KL H L LA + ++ NV + YSLHSW+G TV
Sbjct: 60 PLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHH--TANLYSLHSWVGICTVA 117
Query: 149 LFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLH 208
LF Q +V+GF SFL+ A RA + P+H
Sbjct: 118 LFTCQ--------------------------WVMGFTSFLL----PWAPMWLRALVKPIH 147
Query: 209 ASFGLITFMMAIATCLTGITQRVYLTI 235
FG + +++IA+C++GI ++++ ++
Sbjct: 148 VFFGAMILVLSIASCISGINEKLFFSL 174
>gnl|CDD|176495 cd08765, Cyt_b561_CYBRD1, Vertebrate cytochrome b(561), CYBRD1 gene
product. Duodenal cytochrome b or ferric-chelate
reductase 3, a cytochrome b(561), as found in
vertebrates, which might act as a ferric-chelate
reductase, catalyzing the reduction of Fe(3+) to Fe(2+),
such as associated with the transport of iron from the
endosome to the cytoplasm. It is assumed that this
protein uses ascorbate as the electron donor. This
protein is expressed at the brush border of duodenal
enterocytes and may play a role in the uptake of dietary
Fe(3+), facilitating its transport into the mucosal
cells. It may also be involved in the recycling of
extracellular ascorbate in erythrocyte membranes, and
act as a ferrireductase in epithelial cells of the
respiratory system. Belongs to the cytochrome b(561)
family, which are secretory vesicle-specific electron
transport proteins. Cytochromes b(561) are integral
membrane proteins that bind two heme groups
non-covalently, and may have six alpha-helical
trans-membrane segments.
Length = 153
Score = 76.1 bits (187), Expect = 2e-17
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 66 FNLHPSLMILGFITLSGFSMLLYRISRC--CRHIWVKLFHTILHALAVPCIALAALTIYE 123
FN HP LM++GFI + G ++++YR+ C + +KL H LH LA ++ + ++
Sbjct: 12 FNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFV 71
Query: 124 NKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVG 183
N ++ P + YSLHSW+G V L+ LQ V+G
Sbjct: 72 FHNAKNIP--NMYSLHSWVGLAAVILYPLQ--------------------------LVLG 103
Query: 184 FFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVYLTI 235
+L+ + A RAA++PLH GL F IAT L GIT+++ ++
Sbjct: 104 ISVYLLPV----APVRLRAALMPLHVYSGLFIFGTVIATALMGITEKLIFSL 151
>gnl|CDD|176493 cd08763, Cyt_b561_CYB561, Vertebrate cytochrome b(561), CYB561 gene
product. Cytochrome b(561), as found in vertebrates,
which might act as a ferric-chelate reductase,
catalyzing the reduction of Fe(3+) to Fe(2+), such as
associated with the transport of iron from the endosome
to the cytoplasm. It is assumed that this protein uses
ascorbate as the electron donor. Belongs to the
cytochrome b(561) family, which are secretory
vesicle-specific electron transport proteins.
Cytochromes b(561) are integral membrane proteins that
bind two heme groups non-covalently, and may have six
alpha-helical trans-membrane segments.
Length = 143
Score = 75.2 bits (185), Expect = 3e-17
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 36/169 (21%)
Query: 66 FNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILH--ALAVPCIALAALTIYE 123
FN+HP M+LG + L G ++L+YR+ R K+ H +LH AL + + L A+ Y
Sbjct: 7 FNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYH 66
Query: 124 NKNVQDPPQPHFYSLHSWMGFITVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVG 183
N P YSLHSW G +T L+ LQ +++G
Sbjct: 67 QAN----GYPDMYSLHSWCGILTFVLYFLQ--------------------------WLIG 96
Query: 184 FFSFLVLLCCEGATAACRAAMVPLHASFGLITFMMAIATCLTGITQRVY 232
F FL GA+ R+ PLH FG F+ ++ T L G+T+++
Sbjct: 97 FSFFLF----PGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEKLL 141
>gnl|CDD|215201 PLN02351, PLN02351, cytochromes b561 family protein.
Length = 242
Score = 74.9 bits (184), Expect = 3e-16
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 39 LAALVLVIFWSIHYRGGYSWTEDPKR---HFNLHPSLMILGFITLSGFSMLLYRISRCCR 95
L VLV++W++ ++ + + + LHP LM++GFI +SG ++L++R R
Sbjct: 21 LVVAVLVLYWALFFKSSFLPQSTSQEDLVYAVLHPLLMVIGFILISGEAILVHRWLPGSR 80
Query: 96 HIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQAS 155
K H L LA+ I+ + QD +FYSLHSWMG I V LFG Q
Sbjct: 81 KT-KKSVHLWLQGLALAS---GVFGIWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQ-- 134
Query: 156 RIEFNDYSTWTQEGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVPLHASFGLIT 215
++ GF SF G R ++P H GL T
Sbjct: 135 ------------------------WLTGFMSFW----HRGEMRTTRTTVLPWHVFLGLYT 166
Query: 216 FMMAIATCLTGITQRV 231
+ +A+AT TG+ +++
Sbjct: 167 YGLAVATAETGLLEKL 182
>gnl|CDD|176491 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytochrome b(561),
including the CYB561D2 gene product. Cytochrome b(561),
as found in eukaryotes, similar to and including the
human CYB561D2 gene product. CYB561D2 is a candidate
tumor suppressor. The protein might act as a
ferric-chelate reductase, catalyzing the reduction of
Fe(3+) to Fe(2+), such as associated with the transport
of iron from the endosome to the cytoplasm. It is
assumed that this protein uses ascorbate as the electron
donor. Belongs to the cytochrome b(561) family, which
are secretory vesicle-specific electron transport
proteins. Cytochromes b(561) are integral membrane
proteins that bind two heme groups non-covalently, and
may have six alpha-helical trans-membrane segments.
Length = 183
Score = 60.4 bits (147), Expect = 2e-11
Identities = 41/119 (34%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 39 LAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYR---ISRCCR 95
L A+V F R G S F+ HP LM LGF+ L ++LL +
Sbjct: 1 LVAVVFAAFLLYIARPGTSL-------FSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLA 53
Query: 96 HIWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFGLQA 154
H IL LA+ CI + IY NK +PHF S H +G +TV L LQA
Sbjct: 54 RKTKVRLHWILQLLALLCILAGLVAIYYNKE--RNGKPHFTSWHGILGLVTVILIVLQA 110
>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561),
including the FRRS1 gene product. Cytochrome b(561), as
found in eukaryotes, similar to and including the human
FRRS1 gene product (ferric-chelate reductase 1), also
called SDR-2 (stromal cell-derived receptor 2). This
family comprises a variety of domain architectures, many
of which contain dopamine beta-monooxygenase (DOMON)
domains. The protein might act as a ferric-chelate
reductase, catalyzing the reduction of Fe(3+) to Fe(2+),
such as associated with the transport of iron from the
endosome to the cytoplasm. It is assumed that this
protein uses ascorbate as the electron donor. Belongs to
the cytochrome b(561) family, which are secretory
vesicle-specific electron transport proteins.
Cytochromes b(561) are integral membrane proteins that
bind two heme groups non-covalently, and may have six
alpha-helical trans-membrane segments.
Length = 191
Score = 36.9 bits (86), Expect = 0.003
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 66 FNLHPSLMILGFITLSGFSMLLYRISRCCRHIWVKLFHTILHALAVPCIALAALTIYENK 125
H LM + + L LL R +W L H L LAV +
Sbjct: 36 IKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYL-HAGLQLLAVLLAIAGFVLGI--V 92
Query: 126 NVQDPPQPHFYSLHSWMGFITVGLFGLQA 154
VQ + H+ +G I + L LQ
Sbjct: 93 LVQGGGG-SLNNAHAILGIIVLALAILQP 120
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 35.8 bits (83), Expect = 0.017
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 7/126 (5%)
Query: 36 LLLLAALVLVIFWSIHYRGGY-SWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCC 94
+L+ L+ I + + + + + L F L +LL R
Sbjct: 782 FILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSR 841
Query: 95 RHIW--VKLFHTILHALAVP-CIALAALTIYENKNVQDPPQPHFYSLHSWMGFITVGLFG 151
+ LF LA+ I L L I+ QP SL W +
Sbjct: 842 GRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEW---LIAIAVA 898
Query: 152 LQASRI 157
L I
Sbjct: 899 LLLLYI 904
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 28.3 bits (64), Expect = 3.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 23 NWMEYILVIVLSCLLLLAALVLV-IFWSIH 51
+ME + ++L+ LLLL + F+
Sbjct: 185 IFMELLGKLLLAVLLLLLIVAAFDYFYQRF 214
>gnl|CDD|197945 smart00877, BMC, Bacterial microcompartments are primitive
organelles composed entirely of protein subunits. The
prototypical bacterial microcompartment is the
carboxysome, a protein shell for sequestering carbon
fixation reactions. These proteins for hexameric
structure.
Length = 75
Score = 26.0 bits (58), Expect = 6.3
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 178 VLFVVGFFSFLVLLCCEGATAACRAAM 204
++ V + G AA RAA+
Sbjct: 28 LVGYESIGGGKVTVIITGDVAAVRAAV 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.144 0.479
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,638,554
Number of extensions: 1234886
Number of successful extensions: 3522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3427
Number of HSP's successfully gapped: 170
Length of query: 236
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 142
Effective length of database: 6,768,326
Effective search space: 961102292
Effective search space used: 961102292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (25.6 bits)