RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6395
         (236 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.13
 Identities = 36/206 (17%), Positives = 58/206 (28%), Gaps = 67/206 (32%)

Query: 38  LLAALV-LVIFWSIHYRGGY---SWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRC 93
            L+ L+   +     +  G     W E+P       P    L  I +S            
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNT----PDKDYLLSIPIS------------ 237

Query: 94  CRHIWVKLFHTILHALAVPCIALAALTIYEN--KNVQDPPQPHFYSLHSWMGFITVGLFG 151
                             P I +  L  Y    K +   P      L       T    G
Sbjct: 238 -----------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG----ATGHSQG 276

Query: 152 LQASR-IEFNDYSTWTQ-EGIIINALAMVLFVVGFFSFLVLLCCEGATAACRAAMVP--- 206
           L  +  I   D  +W      +  A+  VLF +G              A    ++ P   
Sbjct: 277 LVTAVAIAETD--SWESFFVSVRKAIT-VLFFIG---------VRCYEAYPNTSLPPSIL 324

Query: 207 ---LHASFGLITFMMAIATCLTGITQ 229
              L  + G+ + M++I    + +TQ
Sbjct: 325 EDSLENNEGVPSPMLSI----SNLTQ 346



 Score = 32.3 bits (73), Expect = 0.13
 Identities = 32/198 (16%), Positives = 55/198 (27%), Gaps = 65/198 (32%)

Query: 51   HYRGGYSWT------EDPKR---HFN------LHPSLMILGF--------ITLSGFSMLL 87
            H++  Y ++       +P     HF       +  +   + F         T   F  + 
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711

Query: 88   YRISRCC-RHIWVKLFHTILHALAVPCIALAALTIYEN-KNVQDPPQPHFYSLHSWMGFI 145
               +    R     L  T       P + L     +E+ K+    P    ++ HS     
Sbjct: 1712 EHSTSYTFRSEKGLLSAT---QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS----- 1763

Query: 146  TVGLFGLQASRIEFNDYSTWTQEGIIINALAMVLFVVGFFSF---LVLLCCEGATAACRA 202
             +G         E   Y+          ALA    +    S    + ++   G T     
Sbjct: 1764 -LG---------E---YA----------ALAS---LADVMSIESLVEVVFYRGMTM---Q 1794

Query: 203  AMVPLHASFGLITFMMAI 220
              VP          M+AI
Sbjct: 1795 VAVPRDELGRSNYGMIAI 1812


>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET:
           FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos
           taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G*
           2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G*
           3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G*
           3aso_G* 2occ_G* 1oco_G* ...
          Length = 85

 Score = 25.9 bits (57), Expect = 4.4
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 100 KLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYS 137
           + +  +   LA+P +AL  L  + +   ++ P    Y 
Sbjct: 14  RTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYH 51


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 27.3 bits (61), Expect = 4.8
 Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 16/117 (13%)

Query: 37  LLLAALVLVIFWSIHYRGGYSWTEDPKRHFNLHPSLMILGFITLSGFSMLLYRISRCCRH 96
           ++LA    +   +++ +G                ++  + F+ +S     L  I+R    
Sbjct: 764 VVLAVGTWITVTTMYAQGENGGIVQN------FGNMDEVLFLQISLTENWLIFITRANGP 817

Query: 97  IWVKLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYSLH-SWMGFITVGLFGL 152
            W  +    L + A+  + + A                F     S +  + + +F  
Sbjct: 818 FWSSIPSWQL-SGAIFLVDILATCF--------TIWGWFEHSDTSIVAVVRIWIFSF 865


>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex
           IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK
           PGV DMU; 1.95A {Bos taurus}
          Length = 97

 Score = 26.0 bits (57), Expect = 5.1
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 100 KLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYS 137
           + +  +   LA+P +AL  L  + +   ++ P    Y 
Sbjct: 26  RTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYH 63


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.144    0.479 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,848,300
Number of extensions: 223346
Number of successful extensions: 629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 24
Length of query: 236
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 145
Effective length of database: 4,160,982
Effective search space: 603342390
Effective search space used: 603342390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.6 bits)