RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6395
         (236 letters)



>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
           VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score = 26.2 bits (58), Expect = 1.0
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 100 KLFHTILHALAVPCIALAALTIYENKNVQDPPQPHFYS 137
           + +  +   LA+P +AL  L  + +   ++ P    Y 
Sbjct: 14  RTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYH 51


>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia
          coli [TaxId: 562]}
          Length = 60

 Score = 25.3 bits (55), Expect = 1.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 10 VRSYDDDDELSGCNW 24
          VRSYD ++E   C W
Sbjct: 46 VRSYDTENEHDVCGW 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.144    0.479 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 948,138
Number of extensions: 42534
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 17
Length of query: 236
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 153
Effective length of database: 1,268,006
Effective search space: 194004918
Effective search space used: 194004918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.1 bits)