BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy64
         (115 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 5   LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
           L EH   HT ++P+ C  C  +F  KK L +H + H                 + ++C  
Sbjct: 37  LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE--------------KPYKCPE 82

Query: 65  CDRAFFDVYNLKLHMRIHTGE 85
           C ++F    NL+ H R HTGE
Sbjct: 83  CGKSFSQRANLRAHQRTHTGE 103



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 14/98 (14%)

Query: 2   KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLE-----------NHM 50
           K+ L  H   HT ++P+ C  C  +F  + +LR H + H                   H+
Sbjct: 62  KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121

Query: 51  KA---VHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           +A    H   + ++C  C ++F    NL  H R HTGE
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE 159


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
          Northeast Structural Genomics Consortium
          Length = 74

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 14/71 (19%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN 74
          D+P+ C+ C ++F+ K +L  H              K VH   + ++C +C   F    N
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH--------------KTVHTGEKPYRCNICGAQFNRPAN 60

Query: 75 LKLHMRIHTGE 85
          LK H RIH+GE
Sbjct: 61 LKTHTRIHSGE 71



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          K  L  H  VHT ++P+ CN+C + F    +L+ H ++H
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 90

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C+   C   F     L +HY+ H                 R FQC
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------------RPFQC 69

Query: 63 KVCDRAFFDVYNLKLHMRIH 82
          + CDRAF    +L LHM+ H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89



 Score = 30.4 bits (67), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 16/38 (42%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 41
          +L  H   HT  RPF C  C   F    HL  H K H 
Sbjct: 53 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
          Bound To Its Target Dna
          Length = 89

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 16/80 (20%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C+   C   F     L +HY+ H                 R FQC
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--------------RPFQC 68

Query: 63 KVCDRAFFDVYNLKLHMRIH 82
          + CDRAF    +L LHM+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88



 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 16/38 (42%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 41
          +L  H   HT  RPF C  C   F    HL  H K H 
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
          Zinc-Binding Domain Of The Zinc Finger Protein 64,
          Isoforms 1 And 2
          Length = 96

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 22/88 (25%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMC----PSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKI 57
          K +LK HM  HT  +P+ C  C      +  L KHLR                  +H   
Sbjct: 21 KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR------------------IHSDE 62

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R F+C++C  A  +   L +H+R HTG+
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90



 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 38 KVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          K   + D L+ HM+  H  ++ ++CK CD A  D  +L  H+RIH+ E
Sbjct: 16 KCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
          Finger Domain Bound To Dna
          Length = 119

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 16/83 (19%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          L+ H   HT ++P+ C+   C   F     L++H + H                ++ FQC
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG--------------VKPFQC 69

Query: 63 KVCDRAFFDVYNLKLHMRIHTGE 85
          K C R F    +LK H R HTGE
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGE 92



 Score = 32.7 bits (73), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 18/37 (48%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          QLK H   HT  +PF C  C   F    HL+ H + H
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89



 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          R F C    C++ +F + +L++H R HTGE
Sbjct: 5  RPFMCAYPGCNKRYFKLSHLQMHSRKHTGE 34


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
          Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR 67
          H   HT +RP+ C++C   F+ + HLR H              + +H K + F+C+ C +
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDH--------------RYIHSKEKPFKCQECGK 81

Query: 68 AFFDVYNLKLHMRIH 82
           F     L +H  +H
Sbjct: 82 GFCQSRTLAVHKTLH 96



 Score = 32.0 bits (71), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++F CK C R F   YNL +H R HT E
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDE 43



 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 5   LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDT 45
           L++H  +H+ ++PF C  C   F   + L  H  +H++  +
Sbjct: 61  LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
          Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
          LK H+  HT ++P+ C    C   F     L +HY+ H                 + FQC
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG--------------AKPFQC 78

Query: 63 KVCDRAFFDVYNLKLHMRIH 82
           VC+R+F    +L LHM+ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRH 98



 Score = 30.4 bits (67), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +L  H   HT  +PF C +C  +F    HL  H K H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 14/80 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +H+  RP+ C  C   F  K  +++H                +H   +  +C+V
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------------TFIHTGEKPHKCQV 62

Query: 65 CDRAFFDVYNLKLHMRIHTG 84
          C +AF    NL  H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82



 Score = 35.0 bits (79), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 77
          F C +C  +FK             +  TL  H+  +H   R + C+ C + F    ++K 
Sbjct: 2  FDCKICGKSFK-------------RSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKK 47

Query: 78 HMRIHTGE 85
          H  IHTGE
Sbjct: 48 HTFIHTGE 55



 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 1  MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
           K  +K+H  +HT ++P  C +C   F    +L  H + H
Sbjct: 41 QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 14/68 (20%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          K Q   HM++H   RP+ C +C   FK+K HL  H K+H                I+ ++
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT--------------GIKPYE 67

Query: 62 CKVCDRAF 69
          C +C + F
Sbjct: 68 CNICAKRF 75



 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 1  MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
          MK  L  HM +HT  +P+ CN+C   F  +    +H
Sbjct: 49 MKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84



 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 47 ENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          + HM ++H  +R + C VC + F   ++L  HM+IHTG
Sbjct: 26 DRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
          To Dna
          Length = 87

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 20 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 65

Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 66 ICGRKFARSDERKRHTKIH 84



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42 KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + D L  H++ +H   + FQC++C R F    +L  H+R HTGE
Sbjct: 17 RSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 49 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66

Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85



 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F     L +H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSRSAELTRHIRIHTGQ--------------KPFQCRICMRNFSRS 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 DHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
          Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66

Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 42 KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + D L  H++ +H   + FQC++C R F    +L  H+R HTGE
Sbjct: 18 RSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          L  H+  HT ++PF C++C   F      ++H K+HL+
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87



 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          R + C V  CDR F     L  H+RIHTG+
Sbjct: 3  RPYACPVESCDRRFSRSDELTRHIRIHTGQ 32


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
          +L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66

Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F     L +H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSRSDELTRHIRIHTGQ--------------KPFQCRICMRNFSRS 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 DHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
          Length = 90

 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +HT  +PF C +C   F    HL  H + H                 + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDI 67

Query: 65 CDRAFFDVYNLKLHMRIH 82
          C R F      K H +IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F     L +H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ--------------KPFQCRICMRNFSRS 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 DHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (CLONE #2)
          Length = 90

 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 14/82 (17%)

Query: 1  MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
           K  L  H+ +HT  +PF C +C   F     L QH + H                 + F
Sbjct: 18 QKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE--------------KPF 63

Query: 61 QCKVCDRAFFDVYNLKLHMRIH 82
           C +C R F  ++    H +IH
Sbjct: 64 ACDICGRKFATLHTRDRHTKIH 85



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F  K +L  H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--------------KPFQCRICMRNFSQH 47

Query: 73 YNLKLHMRIHTGE 85
            L  H+R HTGE
Sbjct: 48 TGLNQHIRTHTGE 60



 Score = 33.1 bits (74), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L +H+  HT ++PF C++C   F       +H K+HL+ 
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQ 88


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
          Length = 90

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
           L  H+ +HT  +PF C +C   F    HL  H + H                 + F C 
Sbjct: 21 NLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACD 66

Query: 64 VCDRAFFDVYNLKLHMRIH 82
          +C R F      K H +IH
Sbjct: 67 ICGRKFARSDERKRHTKIH 85



 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F    +L +H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ--------------KPFQCRICMRNFSRS 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 DHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
          (Tatazf;clone #6)
          Length = 90

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F  K +L  H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ--------------KPFQCRICMRNFSQQ 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 ASLNAHIRTHTGE 60



 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          K  L  H+ +HT  +PF C +C   F  +  L  H + H                 + F 
Sbjct: 19 KTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE--------------KPFA 64

Query: 62 CKVCDRAFFDVYNLKLHMRIH 82
          C +C R F  ++    H +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85



 Score = 32.3 bits (72), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          L  H+  HT ++PF C++C   F       +H K+HL+
Sbjct: 50 LNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLR 87


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
          Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
          Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
          Site)
          Length = 90

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L  H+ +HT  +PF C +C   F    HL  H + H                 + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDI 67

Query: 65 CDRAFFDVYNLKLHMRIH 82
          C R F      K H +IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85



 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDV 72
          +RP+ C +  C   F     L +H ++H                 + FQC++C R F   
Sbjct: 2  ERPYACPVESCDRRFSRSADLTRHIRIHTGQ--------------KPFQCRICMRNFSRS 47

Query: 73 YNLKLHMRIHTGE 85
           +L  H+R HTGE
Sbjct: 48 DHLTTHIRTHTGE 60



 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          L  H+  HT ++PF C++C   F      ++H K+HL+ 
Sbjct: 50 LTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
          Bound To Dna
          Length = 87

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN 74
          ++P+ C  C  +F    +L++H + H                 + ++C  C ++F    +
Sbjct: 2  EKPYKCPECGKSFSQSSNLQKHQRTHTGE--------------KPYKCPECGKSFSQSSD 47

Query: 75 LKLHMRIHTGE 85
          L+ H R HTGE
Sbjct: 48 LQKHQRTHTGE 58



 Score = 37.4 bits (85), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          L++H   HT ++P+ C  C  +F     L++H + H                 + ++C  
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE--------------KPYKCPE 65

Query: 65 CDRAFFDVYNLKLHMRIH 82
          C ++F    +L  H R H
Sbjct: 66 CGKSFSRSDHLSRHQRTH 83


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
          Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
          LK H   HT ++PF C  C   +  K++L +H     +     N  + V      F C V
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-----EARNCMNRSEQV------FTCSV 71

Query: 65 CDRAFFDVYNLKLHMRIHTGE 85
          C   F     L+LHM  HTGE
Sbjct: 72 CQETFRRRMELRLHMVSHTGE 92



 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 4   QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
           +L+ HM  HT + P+ C+ C   F  KK L+ H
Sbjct: 81  ELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113



 Score = 30.0 bits (66), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          +C  C + F   Y LK+H R HTGE
Sbjct: 9  ECPTCHKKFLSKYYLKVHNRKHTGE 33


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 18/87 (20%)

Query: 1   MKRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
            K +L  H+ VHT ++PF C    C   F   ++L+ H              K  H   +
Sbjct: 74  AKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH--------------KRTHTGEK 119

Query: 59  DFQCKV--CDRAFFDVYNLKLHMRIHT 83
            F+C+   CDR F +  + K HM +HT
Sbjct: 120 PFKCEFEGCDRRFANSSDRKKHMHVHT 146



 Score = 32.0 bits (71), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 46  LENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
           L NH++ VH   + F C    C + F    NLK+H R HTGE
Sbjct: 78  LVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 14/69 (20%)

Query: 14 TDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 73
          ++RPF CN C  T++    L +H + HL                R   C  C + F D  
Sbjct: 1  SERPFFCNFCGKTYRDASGLSRHRRAHL--------------GYRPRSCPECGKCFRDQS 46

Query: 74 NLKLHMRIH 82
           +  H+++H
Sbjct: 47 EVNRHLKVH 55



 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          R F C  C + + D   L  H R H G
Sbjct: 3  RPFFCNFCGKTYRDASGLSRHRRAHLG 29


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R + C VC +AF D  NL  H +IHTGE
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGE 38



 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +RP++C +C   F  + +L +H K+H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
          Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 35.0 bits (79), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + FQCK C R F    +LK H R HTGE
Sbjct: 1  KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 18/84 (21%)

Query: 4   QLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
           +LK H  VHT ++PF C    C   F L  +LR H ++H                 R + 
Sbjct: 49  KLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT--------------GDRPYV 94

Query: 62  CKV--CDRAFFDVYNLKLHMRIHT 83
           C    C++ F    NLK H+  H 
Sbjct: 95  CPFDGCNKKFAQSTNLKSHILTHA 118



 Score = 32.7 bits (73), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 17/83 (20%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC-- 62
          +++H+  H   R  VC  C   F     L++H              + VH   + FQC  
Sbjct: 23 MRKHLHTHG-PRVHVCAECGKAFVESSKLKRH--------------QLVHTGEKPFQCTF 67

Query: 63 KVCDRAFFDVYNLKLHMRIHTGE 85
          + C + F   +NL+ H+RIHTG+
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGD 90



 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 4   QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVHLK 42
            L+ H+ +HT DRP+VC  + C   F    +L+ H   H K
Sbjct: 79  NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+CK C +AF    +L  H+RIHTGE
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGE 38



 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++PF C  C   F+   HL  H ++H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 34.7 bits (78), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    NL  H RIHTGE
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGE 38



 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ C  C   F  K +L QH ++H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 34.3 bits (77), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLEN 48
          ++P+ CN+C   F L  HL QH +VH + +TL  
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ-ETLSG 42



 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C VC +AF    +L  H+R+HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 34.3 bits (77), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + +QC  C +AF     L  H R+HTGE
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGE 38


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.9 bits (76), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++CKVC +AF    +L  H + HTGE
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGE 38



 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ C +C   F  K HL QH K H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.5 bits (75), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF D  NL  H +IHTGE
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGE 38


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.5 bits (75), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  C +AF    NL +H R HTGE
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGE 38


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domain Of Zinc Finger Protein 435
          Length = 77

 Score = 33.5 bits (75), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          L +H   HT ++P+ C+ C   F  + HL  H++VH
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69



 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 14/69 (20%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
          R + C+ C  +F     L +H + H                 + ++C  C +AF    +L
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGE--------------KPYKCDECGKAFIQRSHL 62

Query: 76 KLHMRIHTG 84
            H R+HTG
Sbjct: 63 IGHHRVHTG 71



 Score = 28.5 bits (62), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R ++C  C ++F    +L  H R HTGE
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGE 44


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++CK C +AF    +L  H R+HTGE
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGE 38



 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ C  C   F    HL QH +VH
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
          Nmr, 25 Structures
          Length = 60

 Score = 33.1 bits (74), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 15/68 (22%)

Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 77
          FVC +C   F  ++HL++HY+ H             +EK   + C +C+RAF     L  
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSH------------TNEK--PYPCGLCNRAFTRRDLLIR 48

Query: 78 H-MRIHTG 84
          H  +IH+G
Sbjct: 49 HAQKIHSG 56



 Score = 29.3 bits (64), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 59 DFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           F C+VC RAF    +LK H R HT E
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNE 28



 Score = 27.3 bits (59), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
          LK H   HT ++P+ C +C   F  +  L +H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.1 bits (74), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF     L  H RIHTGE
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGE 38


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.1 bits (74), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C VC +AF    +L +H RIH+G+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGK 38


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.7 bits (73), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C+ C + +   +NL +H ++HTGE
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGE 38


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R ++C  C +AF     L +H RIH GE
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGE 38


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R ++C  C +AF     L +H RIHTGE
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGE 38


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
          To Dna
          Length = 73

 Score = 32.7 bits (73), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 46 LENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGE 85
          + N +  V  K+R + C V  CDR F     L  H+RIHTG+
Sbjct: 6  MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47



 Score = 32.3 bits (72), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 4  QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +L  H+ +HT  +PF C +C   F    HL  H + H
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72



 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 42 KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 83
          + D L  H++ +H   + FQC++C R F    +L  H+R HT
Sbjct: 33 RSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.7 bits (73), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 55 EKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
            ++ + C  C +AF     L +HMR HTGE
Sbjct: 6  SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.3 bits (72), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    NL +H R HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38



 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F  K +L  H + H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
          Zinc Finger Protein 32
          Length = 41

 Score = 32.3 bits (72), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          + +QCK C ++F    +L +H R+HTG
Sbjct: 9  KPYQCKECGKSFSQRGSLAVHERLHTG 35


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Zinc Finger Protein 24
          Length = 72

 Score = 32.3 bits (72), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 14/69 (20%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYN 74
          ++P+ C  C   F     L QH +VH                 + ++C  C +AF     
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGE--------------KPYKCLECGKAFSQNSG 57

Query: 75 LKLHMRIHT 83
          L  H RIHT
Sbjct: 58 LINHQRIHT 66



 Score = 29.6 bits (65), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDT 45
          L +H  VHT ++P+ C  C   F     L  H ++H    +
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70



 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C +AF     L  H R+HTGE
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGE 40


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.3 bits (72), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  C ++F     L  H RIHTGE
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGE 38



 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++PF C  C  +F +   L  H ++H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.3 bits (72), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++CK C + F  + +L  H R+HTGE
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38



 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
          +P+ C  C  TF    HL QH +VH
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVH 35


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.3 bits (72), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          F+C  C + F    +L +H RIHTGE
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGE 38


>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
          Of Human Zinc Finger Protein 64, Isoforms 1 And 2
          Length = 70

 Score = 32.0 bits (71), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 2  KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 38
          K  L+ H  +H TDRPF CN C    K   +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          F+C  C +AF     L +H +IHTGE
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGE 38


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C +C ++F     L +H +IHTGE
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGE 38


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 32.0 bits (71), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  C ++F    NL  H RIHTGE
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGE 38



 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
           +PF C  C  +F+ K +L  H ++H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.0 bits (71), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C+ C +AF     L+ H RIHTGE
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGE 38


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F C  C +AF D   L  H RIHTGE
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE 38


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++C VC + F    +L+ H R+HTGE
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGE 38


>pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna
           Pseudouridine Synthase Rlud
          Length = 349

 Score = 31.6 bits (70), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 6   KEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH 54
           + H AVH   +P V +     +++ +H R H ++ L+++T   H   VH
Sbjct: 219 RTHXAVHPMGKPAVTH-----YRIXEHFRVHTRLRLRLETGRTHQIRVH 262


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++ FQC++C R F    +L  H+R HTGE
Sbjct: 1  MKPFQCRICMRNFSRSDHLTTHIRTHTGE 29



 Score = 30.4 bits (67), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEK 56
          L  H+  HT ++PF C++C   F      ++H  +   +  LE+ ++ +  K
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSK 70



 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 14/67 (20%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
          +PF C +C   F    HL  H + H                 + F C +C R F      
Sbjct: 2  KPFQCRICMRNFSRSDHLTTHIRTHTGE--------------KPFACDICGRKFARSDER 47

Query: 76 KLHMRIH 82
          K H  I 
Sbjct: 48 KRHRDIQ 54


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C VC ++F    +L +H RIHTGE
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGE 38


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
          Cys2His2 Zinc Finger From The Human Enhancer Binding
          Protein Mbp-1
          Length = 57

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 5  LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYK 38
          LK+H+  HT  RP+ C  C  +FK K +L +H K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C ++F     L +H RIHTGE
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + FQC+ C + F    +L  H R+HTGE
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGE 38



 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++PF C  C   F    HL  H +VH
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          R ++C+ C ++F    +L LH RIHTG
Sbjct: 9  RVYECQECGKSFRQKGSLTLHERIHTG 35


>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          342- 372) Of Human Zinc Finger Protein 473
          Length = 44

 Score = 31.2 bits (69), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 41
          + HT  R + C+ C +TF L+KHL QH K H 
Sbjct: 6  SGHTRKR-YECSKCQATFNLRKHLIQHQKTHA 36


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.2 bits (69), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P++CN C  +F  K HL +H ++H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35



 Score = 28.9 bits (63), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C ++F    +L  H RIHTGE
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGE 38


>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
          Fog-1
          Length = 35

 Score = 30.8 bits (68), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
          RPFVC +C S F  K +  +H KVH
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVH 30



 Score = 25.4 bits (54), Expect = 8.9,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHT 83
          R F C++C  AF    N   H+++HT
Sbjct: 6  RPFVCRICLSAFTTKANCARHLKVHT 31


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
          Zinc Finger Protein
          Length = 28

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
          RP+ C++C   F LK  +  HY+VH
Sbjct: 2  RPYSCSVCGKRFSLKHQMETHYRVH 26



 Score = 28.9 bits (63), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          +R + C VC + F   + ++ H R+HTG
Sbjct: 1  MRPYSCSVCGKRFSLKHQMETHYRVHTG 28


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
          Zinc Finger Protein 473
          Length = 42

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C+ C +AF     L +H R+HTGE
Sbjct: 9  KPYVCQECGKAFTQSSCLSIHRRVHTGE 36


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDT 45
          +RPF CN C   F  + HL  H ++H +  +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKS 40


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 30.8 bits (68), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +  +P+VCN C   F LK  L  H ++H
Sbjct: 6  SGQKPYVCNECGKAFGLKSQLIIHERIH 33



 Score = 28.5 bits (62), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C +AF     L +H RIHTGE
Sbjct: 9  KPYVCNECGKAFGLKSQLIIHERIHTGE 36


>pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine
           Synthase Rlud From Escherichia Coli
 pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli
          Length = 325

 Score = 30.4 bits (67), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 6   KEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH 54
           + HMAVH   +P V +     +++ +H R H ++ L+++T   H   VH
Sbjct: 195 RTHMAVHPMGKPAVTH-----YRIMEHFRVHTRLRLRLETGRTHQIRVH 238


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 30.4 bits (67), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C +AF     L +HMR H+GE
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGE 38


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.4 bits (67), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C VC +AF    +L  H R+H+GE
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGE 38


>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          626- 654) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 30.4 bits (67), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C++C   F  +  LK H+RIHTG 
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGS 37


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.4 bits (67), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           +  QC  C R F    +L  H RIHTGE
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGE 38



 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 20 CNMCPSTFKLKKHLRQHYKVH 40
          C+ C   F LK HL QH ++H
Sbjct: 15 CHECGRGFTLKSHLNQHQRIH 35


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.4 bits (67), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ C +C   F++  HL QH+ VH
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35



 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C+VC +AF    +L  H  +H+GE
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGE 38


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.0 bits (66), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          K + ++C  C +AF    NL  H  IHTGE
Sbjct: 9  KEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++ + C  C R F D   L+ H+RIHTGE
Sbjct: 1  MKPYVCIHCQRQFADPGALQRHVRIHTGE 29


>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C+ CD  F    +L+LH  +H GE
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGE 38


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 30.0 bits (66), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQH-YKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF 69
          +H   + FVC+    + +L+    Q+   VH++  T E   K   E         C +++
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG--------CRKSY 79

Query: 70 FDVYNLKLHMRIHTGE 85
            + NLK H+R HTGE
Sbjct: 80 SRLENLKTHLRSHTGE 95



 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 17/81 (20%)

Query: 5   LKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
           LK H+  HT ++P++C    C   F                     H    H   + + C
Sbjct: 85  LKTHLRSHTGEKPYMCEHEGCSKAFS-------------NASDRAKHQNRTHSNEKPYVC 131

Query: 63  KV--CDRAFFDVYNLKLHMRI 81
           K+  C + + D  +L+ H++ 
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKT 152


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R  +C  C ++F    +L  H RIHTGE
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGE 38



 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +RP  CN C  +F    HL QH ++H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.0 bits (66), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  CD++F     L  H  IHTGE
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGE 38



 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +  T ++PF C+ C  +F+ +  L  H  +H
Sbjct: 5  SSGTAEKPFRCDTCDKSFRQRSALNSHRMIH 35


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
          Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          +C  C + F   Y L +H+R HTGE
Sbjct: 6  ECSYCGKFFRSNYYLNIHLRTHTGE 30



 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 8  HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          H+  HT ++P+ C  C      K  LR H + H K
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    NL  H  IHTGE
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGE 38


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          QC +C +AF    +L  H+R HTGE
Sbjct: 4  QCVMCGKAFTQASSLIAHVRQHTGE 28


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.6 bits (65), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C+ C + F     L  H R+HTGE
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGE 38


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
          Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 29.3 bits (64), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFF 70
           H+ ++P+ C +C        H R      +KM  L+ H     E +  F C  CD    
Sbjct: 9  THSGEKPYECYIC--------HARFTQSGTMKMHILQKHT----ENVAKFHCPHCDTVIA 56

Query: 71 DVYNLKLHMR 80
             +L +H+R
Sbjct: 57 RKSDLGVHLR 66


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 29.3 bits (64), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 59 DFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           F C+VC RAF    +LK H R HT E
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNE 28



 Score = 29.3 bits (64), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 17 PFVCNMCPSTFKLKKHLRQHYKVH 40
           FVC +C   F  ++HL++HY+ H
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSH 25


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++ + C  C +AF    +L  H  IHTGE
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGE 38


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
          Zinc Finger Protein 32
          Length = 42

 Score = 29.3 bits (64), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    +L +H+R+HTG 
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGS 37


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F    HL  H+++H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35



 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + F    +L  H RIHTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGE 38


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 29.3 bits (64), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF     L +H R H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMD 44
          T + PF CN C  TF    HL +H  +H   +
Sbjct: 8  TKEHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39



 Score = 25.4 bits (54), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 56 KIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          K   F+C  C + F    +L  H  IH GE
Sbjct: 9  KEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 29.3 bits (64), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
           +C+ C + F    NLK H+RIH+GE
Sbjct: 3  LKCRECGKQFTTSGNLKRHLRIHSGE 28


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 59 DFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           F C+VC RAF     LK H R HT E
Sbjct: 2  SFVCEVCTRAFARQEALKRHYRSHTNE 28



 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 17 PFVCNMCPSTFKLKKHLRQHYKVH 40
           FVC +C   F  ++ L++HY+ H
Sbjct: 2  SFVCEVCTRAFARQEALKRHYRSH 25


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
          Zinc Finger Protein 278
          Length = 48

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          +   C++C + F DVY+L  H   H+GE
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGE 38


>pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic
           Module
          Length = 252

 Score = 29.3 bits (64), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 6   KEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH 54
           + H AVH   +P V +     +++ +H R H ++ L+++T   H   VH
Sbjct: 122 RTHXAVHPXGKPAVTH-----YRIXEHFRVHTRLRLRLETGRTHQIRVH 165


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  C +++    +L  H R+HTGE
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGE 38



 Score = 28.5 bits (62), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++PF C  C  ++  + HL QH +VH
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.3 bits (64), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF D  +   H R+HTG+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.9 bits (63), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          ++ F CN C  TF   K+L QH ++H +
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTR 37


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
          Of Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 28.9 bits (63), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHYK 38
           HT ++P+ C+ C  TF+ K+ L  H+K
Sbjct: 9  THTGEKPYACSHCDKTFRQKQLLDMHFK 36


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.9 bits (63), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
            F C  C + F    NL +H +IHTGE
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGE 38


>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
          Length = 29

 Score = 28.9 bits (63), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++ +C  CD+ F  V NLK H++IH  +
Sbjct: 1  KEHKCPHCDKKFNQVGNLKAHLKIHIAD 28


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          +C  C +AF     L +H RIHTGE
Sbjct: 12 ECNNCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.9 bits (63), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++C  C +AF   Y L  H R H GE
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGE 38


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDT 45
          +RP+ CN C   F    HL +H K H +  +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKS 40


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
          In Zinc Finger Protein 278
          Length = 95

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 62 CKVCDRAFFDVYNLKLHMRIHTGE 85
          C++C + F DVY+L  H   H+GE
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE 33


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
          Implications For Dna Binding
          Length = 29

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 15/27 (55%)

Query: 59 DFQCKVCDRAFFDVYNLKLHMRIHTGE 85
           F C+VC RAF     LK H R HT E
Sbjct: 2  SFVCEVCTRAFARQEYLKRHYRSHTNE 28



 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 17 PFVCNMCPSTFKLKKHLRQHYKVH 40
           FVC +C   F  +++L++HY+ H
Sbjct: 2  SFVCEVCTRAFARQEYLKRHYRSH 25


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C+ C   F  V +L+ H+ IHTG 
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGS 37


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 28.5 bits (62), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF     L +H R HTGE
Sbjct: 9  KPYECTDCGKAFGLKSQLIIHQRTHTGE 36


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R  +C  C + F    N   H RIHTGE
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGE 38


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          ++P++C  C   F ++ +L +H K+H K 
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQ 38


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
          Zinc Finger Protein 224
          Length = 46

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C+ C + +    NL +H R+H GE
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGE 38


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
          Domains From Human Krueppel-Like Factor 10
          Length = 72

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 55 EKIRDFQCK--VCDRAFFDVYNLKLHMRIHTGE 85
           +IR   C    C + +F   +LK H R HTGE
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45



 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 5  LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH 40
          LK H   HT ++PF C+   C   F     L +H + H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
          (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +  +  +P VCN C  TF+    L +H ++H
Sbjct: 3  SGSSGKKPLVCNECGKTFRQSSCLSKHQRIH 33


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          R ++C  C +AF    +L  H R HTGE
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGE 38


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+VC+ C   F L   L +H ++H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35



 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C +AF     L  H RIHTGE
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGE 38


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          +C+ C ++F     L +H RIHTGE
Sbjct: 14 ECRECGKSFSFNSQLIVHQRIHTGE 38


>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
          Protein Zfy: 2d Nmr Structure Of An Even Finger And
          Implications For "jumping-Linker" Dna Recognition
          Length = 30

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRI 81
          + +QC+ C++ F D  NLK H++ 
Sbjct: 1  KTYQCQYCEKRFADSSNLKTHIKT 24


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF     L +H + HTGE
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGE 38


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C+ C + F+       H R H+GE
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGE 38


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C + F     L +H RIHTGE
Sbjct: 9  KPYGCNECGKDFSSKSYLIVHQRIHTGE 36



 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          +  + ++P+ CN C   F  K +L  H ++H
Sbjct: 3  SGSSGEKPYGCNECGKDFSSKSYLIVHQRIH 33


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          F C+ C++ F   ++L+ H+RIHT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++ + C  C +AF     L +H R HTGE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGE 38



 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
          +P+VCN C   F+ K +L  H + H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    +L  H  IHTG+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGK 38



 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F ++  L  H  +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          + ++C  C +AF    +L  H RIHTG
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTG 37


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C +AF    +L +H   H+GE
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGE 38


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F    HL +H +VH
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35



 Score = 26.2 bits (56), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          + ++C  C + F    +L  H R+HTG
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTG 37


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
          592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + F     L  H RIHTGE
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGE 38



 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F+   +L +H ++H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          ++C  C + F     L  H +IHTGE
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGE 38


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 4   QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 40
           QLK H   HT   P+ C    C   F L   L++H KVH
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159



 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 22/102 (21%)

Query: 5   LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHY------KVHLKMDTLENHMKAV--- 53
           L  H   HT ++ F C+   C   F  K ++++H+      K+ + +   EN  KA    
Sbjct: 60  LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119

Query: 54  ---------HEKIRDFQC--KVCDRAFFDVYNLKLHMRIHTG 84
                    H +   ++C  + CD+ F     LK H ++H G
Sbjct: 120 NQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C + F     L  H R HTGE
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGE 38



 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C  TF  K  L  H + H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          ++P+ CN C   F    HL  H ++H  +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGV 38



 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTG 84
          + ++C  C + F    +L  H RIHTG
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTG 37


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + CK C ++F     L  H R+H+GE
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGE 38


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
          Human Zinc Finger Protein 224
          Length = 46

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C  C + F     L +H ++HTGE
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGE 38


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
          Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
          Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 4  QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 40
          QLK H   HT   P+ C    C   F L   L++H KVH
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C ++F     L++H + HTGE
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGE 38



 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ C+ C  +F  K  LR H K H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMD 44
          + ++P+VC+ C   F  K  L  H  +H  + 
Sbjct: 6  SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + +QC  C ++F   Y L  H   HT E
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTRE 38


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
          The Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 4  QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVH 40
          QLK H   HT   P+ C    C   F L   L++H KVH
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          + ++P+ CN C   F  K  L  H  VH  +
Sbjct: 6  SGEKPYSCNECGKAFTFKSQLIVHKGVHTGV 36


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 484
          Length = 42

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + + C  C +AF    +   H RIHTGE
Sbjct: 9  KPYVCTECGKAFIRKSHFITHERIHTGE 36



 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          + ++P+VC  C   F  K H   H ++H
Sbjct: 6  SGEKPYVCTECGKAFIRKSHFITHERIH 33


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + +    +L  H R+HTGE
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGE 38


>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C  A     NL +H+R HTGE
Sbjct: 8  KPYKCPQCSYASAIKANLNVHLRKHTGE 35


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 4  QLKEHMAVHTTDRPFVC--NMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
          +L+ H++ HT ++PF C    C   F    HL +H                 H   ++F 
Sbjct: 20 KLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH--------------SLTHTGEKNFT 65

Query: 62 CKV--CDRAFFDVYNLKLHM-RIHT 83
          C    CD  F    N+K H  R H 
Sbjct: 66 CDSDGCDLRFTTKANMKKHFNRFHN 90


>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
          Human Ubi-D4
          Length = 48

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYK-VHLKMDTLEN 48
          D+P+ C++C   +K +  L  HY   HL  +  E+
Sbjct: 5  DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGED 39


>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          315- 345) Of Human Zinc Finger Protein 473
          Length = 44

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHT 83
          + C  C +AF  +++L  H +IHT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F    HL +H  +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35



 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + F    +L  H  IHTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + F    +L  H  IHTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGE 38



 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
          +P+ CN C   F    HL +H  +H
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIH 35


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIH 82
          I+ FQC  CDR+F    +L LH + H
Sbjct: 9  IKPFQCPDCDRSFSRSDHLALHRKRH 34


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
          Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + CK C ++F     L  H R+H+GE
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGE 38


>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
 pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
 pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
          Length = 419

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 55  EKIRDFQCKVCDRAFFDVYNLKLHMRIH 82
           E++R+   K   +AF+DVYN+     IH
Sbjct: 367 EEVRERLDKKMTKAFYDVYNIAKEKNIH 394


>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
          Sequence Taken From The Third Zinc Finger Domain Of The
          Human Transcriptional Repressor Protein Yy1 (Ying And
          Yang 1, A Delta Transcription Factor), Nmr, 34
          Structures
          Length = 28

 Score = 26.2 bits (56), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 60 FQCKV--CDRAFFDVYNLKLHMRIHTG 84
          FQC    C + F   +NLK H++IHTG
Sbjct: 2  FQCTFXCCGKRFSLDFNLKTHVKIHTG 28


>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 26.2 bits (56), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          +  ++C  C+++F     L +H R+HT E
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTRE 38


>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          484- 512) Of Human Zinc Finger Protein 473
          Length = 42

 Score = 26.2 bits (56), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
          + ++P+ C  C  TF     L QH K+H
Sbjct: 6  SGEKPYSCAECKETFSDNNRLVQHQKMH 33


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
          Zinc Finger Protein 268
          Length = 46

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
          +P+ C+ C  TF LK  L  H + H  +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGV 38


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
          Finger Protein 278
          Length = 54

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 13/50 (26%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
           +P++C  C   F              + D L  H+K VH   R  +C+V
Sbjct: 10 GKPYICQSCGKGFS-------------RPDHLNGHIKQVHTSERPHKCQV 46


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C +C ++F     L  H  +HT E
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAE 38


>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          329- 359) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGE 85
          +C  C + F     L +H RIHTGE
Sbjct: 12 ECSECRKTFSFHSQLVIHQRIHTGE 36


>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
          Finger Dna-Binding Domain
          Length = 27

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 60 FQCKVCDRAFFDVYNLKLHMRIH 82
          ++C +C+R+F +   L  H R+H
Sbjct: 2  YKCGLCERSFVEKSALSRHQRVH 24


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 15 DRPFVCNMCPSTFKLKKHLRQHYKVH 40
          ++P+ CN C   F    HL +H  +H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35



 Score = 25.0 bits (53), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + ++C  C + F    +L  H  IHTGE
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGE 38


>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
          + F+C +C+ A     NLK HM  H+ E
Sbjct: 8  KPFKCSLCEYATRSKSNLKAHMNRHSTE 35


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
          Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 1  MKRQLKEHMAVHTTDRPFVC 20
           K+ LKEHM +H+  R ++C
Sbjct: 52 FKKHLKEHMKLHSDTRDYIC 71


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
          + ++PF C+ C   F  K +L  H + H +
Sbjct: 6  SGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35


>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
          171- 203) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 25.0 bits (53), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 62 CKVCDRAFFDVYNLKLHMRIHTGE 85
          C  C + F  +  L++H R+H GE
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGE 38


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.138    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,713,106
Number of Sequences: 62578
Number of extensions: 83454
Number of successful extensions: 716
Number of sequences better than 100.0: 175
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 369
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)