RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy64
(115 letters)
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 64.5 bits (158), Expect = 3e-15
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
HT ++P+ C+ C TF+ K+ L H+K + + F C
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY----HDP------NFVPAAFVCSK 52
Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
C + F + H G
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGV 76
Score = 32.5 bits (75), Expect = 0.006
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 74 NLKLHMRIHTGEKKY 88
+ R HTGEK Y
Sbjct: 2 SSGSSGRTHTGEKPY 16
Score = 26.3 bits (59), Expect = 0.99
Identities = 1/26 (3%), Positives = 4/26 (15%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTF 27
+ + H +
Sbjct: 60 RNTMARHADNCAGPDGVEGENSGPSS 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 64.1 bits (157), Expect = 3e-15
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
H+ ++P+ C +C + F ++ H E + F C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK------------HTENVAKFHCPH 50
Query: 65 CDRAFFDVYNLKLHMR-IHTGEKKY 88
CD +L +H+R H+
Sbjct: 51 CDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 40.6 bits (96), Expect = 5e-06
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 20/63 (31%)
Query: 28 KLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE-- 85
R H + E + ++C +C F +K+H+ E
Sbjct: 2 SSGSSGRTH--------SGE----------KPYECYICHARFTQSGTMKMHILQKHTENV 43
Query: 86 KKY 88
K+
Sbjct: 44 AKF 46
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 64.4 bits (158), Expect = 8e-15
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH--EKIRD 59
K LK H HT ++PF C C + K++L +H + ++ E+
Sbjct: 20 KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN-----------CMNRSEQ--V 66
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F C VC F L+LHM HTGE Y
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Score = 53.3 bits (129), Expect = 1e-10
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 2 KRQLKEHM---AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
K L EH ++ +++ F C++C TF+ + LR H H T E
Sbjct: 48 KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH----TGE----------M 93
Query: 59 DFQCKVCDRAFFDVYNLKLHM-RIHTGEK 86
++C C + F +L+ HM ++H+G
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 51.7 bits (125), Expect = 5e-10
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
+ C C F K +L+ H + H T E + F+C C + +F
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH----TGE----------KPFECPKCGKCYFR 47
Query: 72 VYNLKLHMR---IHTGEKKY 88
NL H ++ E+ +
Sbjct: 48 KENLLEHEARNCMNRSEQVF 67
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 63.3 bits (155), Expect = 9e-15
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
L H+ +HT +PF C +C F HL H + H T E + F C +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH----TGE----------KPFACDI 67
Query: 65 CDRAFFDVYNLKLHMRIHTGEK 86
C R F K H +IH +K
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 48.6 bits (117), Expect = 4e-09
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 73
RP+ C + C F L +H ++H T + + FQC++C R F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIH----TGQ----------KPFQCRICMRNFSRSD 48
Query: 74 NLKLHMRIHTGEKKY 88
+L H+R HTGEK +
Sbjct: 49 HLTTHIRTHTGEKPF 63
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 62.4 bits (153), Expect = 2e-14
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
LK HM HT +P+ C C L +H ++H + E R F+C++
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH----SDE----------RPFKCQI 69
Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
C A + L +H+R HTG+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGP 93
Score = 55.9 bits (136), Expect = 6e-12
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
+ P C +C F K L+ H + H T + ++CK CD A D
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH----TGV----------KPYKCKTCDYAAAD 48
Query: 72 VYNLKLHMRIHTGEKKY 88
+L H+RIH+ E+ +
Sbjct: 49 SSSLNKHLRIHSDERPF 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 60.9 bits (149), Expect = 5e-14
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 1 MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
M H + +D+P+ C+ C ++F+ K +L H VH T E + +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH----TGE----------KPY 46
Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+C +C F NLK H RIH+GEK Y
Sbjct: 47 RCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 61.8 bits (151), Expect = 6e-14
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
L+ H HT ++P+ C+ C F L++H + H T + FQC
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH----TGV----------KPFQC 69
Query: 63 KVCDRAFFDVYNLKLHMRIHTGEKKY 88
K C R F +LK H R HTGEK +
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 49.4 bits (119), Expect = 4e-09
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
QLK H HT +PF C C F HL+ H + H T E + F C+
Sbjct: 53 QLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH----TGE----------KPFSCR 98
Query: 64 V--CDRAFFDVYNLKLHMRIH 82
C + F L H +H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 45.6 bits (109), Expect = 1e-07
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 13 TTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRA 68
+ RPF+C C + HL+ H + H T E + +QC C+R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH----TGE----------KPYQCDFKDCERR 47
Query: 69 FFDVYNLKLHMRIHTGEKKY 88
F LK H R HTG K +
Sbjct: 48 FSRSDQLKRHQRRHTGVKPF 67
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 59.8 bits (146), Expect = 3e-13
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
T + F+C C F +L H + H T E R + C +
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH----TDE----------RPYTCDI 50
Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
C +AF +L+ H IH+ EK +
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPF 74
Score = 58.2 bits (142), Expect = 1e-12
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
L H HT +RP+ C++C F+ + HLR H +H + E + F+C+
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH----SKE----------KPFKCQ 77
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C + F L +H +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSP 102
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 58.3 bits (142), Expect = 5e-13
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
+H+ ++P+ C C F L QH +VH T E + ++C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH----TGE----------KPYKCLE 47
Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
C +AF L H RIHT
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
L +H VHT ++P+ C C F L H ++H
Sbjct: 29 ILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 59.6 bits (145), Expect = 9e-13
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
Q + C TF L H + + + H +C
Sbjct: 12 QELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME----HVGGPEQNNH-VCYWEECP 66
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
++F Y L H+R+HTGEK +
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKPF 91
Score = 54.6 bits (132), Expect = 8e-11
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
L H+ VHT ++PF C C F ++L+ H + H T E + F+C
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH----TGE----------KPFKC 123
Query: 63 KV--CDRAFFDVYNLKLHMRIHTGEKKY 88
+ CDR F + + K HM +HT +K
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSG 151
Score = 54.2 bits (131), Expect = 1e-10
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 25/96 (26%)
Query: 4 QLKEHMAVHTTDRPFV---------CNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH 54
+L H+ + P C +FK K L H +VH T E
Sbjct: 40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH----TGE------- 88
Query: 55 EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
+ F C C + F NLK+H R HTGEK +
Sbjct: 89 ---KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Score = 28.0 bits (63), Expect = 0.48
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 5 LKEHMAVHTTDRPFVCN 21
K+HM VHT+D+ +
Sbjct: 138 RKKHMHVHTSDKSGPSS 154
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 57.5 bits (140), Expect = 9e-13
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF 69
+ ++ P C+ C + K LR H ++H + R F+C C
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH----CTD----------RPFKCNYCSFDT 47
Query: 70 FDVYNLKLHMRIHTGEKKY 88
NL HM+ G+
Sbjct: 48 KQPSNLSKHMKKFHGDMSG 66
Score = 41.3 bits (98), Expect = 2e-06
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
K L+ H +H TDRPF CN C K +L +H K
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 58.6 bits (143), Expect = 9e-13
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
Q HM++H RP+ C +C FK+K HL H K+H T + ++C
Sbjct: 24 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH----TGI----------KPYECN 69
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
+C + F ++ H + + K Y
Sbjct: 70 ICAKRF--MWRDSFHRHVTSCTKSY 92
Score = 53.6 bits (130), Expect = 7e-11
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 9 MAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRA 68
+ + D+ + C C +F K +H +H R + C VC +
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH----LGL----------RPYGCGVCGKK 46
Query: 69 FFDVYNLKLHMRIHTGEKKY 88
F ++L HM+IHTG K Y
Sbjct: 47 FKMKHHLVGHMKIHTGIKPY 66
Score = 32.0 bits (74), Expect = 0.013
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 20/71 (28%)
Query: 1 MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVH--EKIR 58
MK L HM +HT +P+ CN+C F + +H V K
Sbjct: 49 MKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH----------------VTSCTK-- 90
Query: 59 DFQCKVCDRAF 69
++ ++
Sbjct: 91 SYEAAKAEQNT 101
Score = 24.7 bits (55), Expect = 6.3
Identities = 2/27 (7%), Positives = 5/27 (18%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLR 34
H V + + +
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 56.7 bits (138), Expect = 3e-12
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
R + C+ C +F L +H + H T E + ++C
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH----TGE----------KPYKCD 50
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C +AF +L H R+HTG
Sbjct: 51 ECGKAFIQRSHLIGHHRVHTGSGPS 75
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 57.5 bits (140), Expect = 4e-12
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
LK H VHT ++PF C C F L +LR H ++H T + R + C
Sbjct: 50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH----TGD----------RPYVC 95
Query: 63 KV--CDRAFFDVYNLKLHMRIHTGEKKY 88
C++ F NLK H+ H K
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 54.1 bits (131), Expect = 8e-11
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
+++H+ H R VC C F L++H VH T E + FQC
Sbjct: 23 MRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVH----TGE----------KPFQCTF 67
Query: 65 --CDRAFFDVYNLKLHMRIHTGEKKY 88
C + F +NL+ H+RIHTG++ Y
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPY 93
Score = 48.3 bits (116), Expect = 1e-08
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%)
Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVY 73
R C C F+ +R+H H + C C +AF +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-------------GPR--VHVCAECGKAFVESS 48
Query: 74 NLKLHMRIHTGEKKY 88
LK H +HTGEK +
Sbjct: 49 KLKRHQLVHTGEKPF 63
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 56.4 bits (137), Expect = 4e-12
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 18/85 (21%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
L H+ HT ++PF C++C F ++H + H
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-------------HIL--PILEDK 63
Query: 65 CDRAFFDVYNLKLH---MRIHTGEK 86
+ Y+L+ ++ GE+
Sbjct: 64 VEELLSKNYHLENEVARLKKLVGER 88
Score = 46.7 bits (112), Expect = 2e-08
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
+PF C +C F HL H + H T E + F C +C R F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH----TGE----------KPFACDICGRKFARSDER 47
Query: 76 KLHMRIHTGEKKY 88
K H I
Sbjct: 48 KRHRDIQH-ILPI 59
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 57.8 bits (141), Expect = 7e-12
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
L EH HT ++P+ C C +F KK L +H + H T E + ++C
Sbjct: 36 HLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH----TGE----------KPYKCP 81
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C ++F NL+ H R HTGEK Y
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPY 106
Score = 57.5 bits (140), Expect = 1e-11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
L+ H HT ++P+ C C +F HLR H + H T E + ++C
Sbjct: 92 NLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH----TGE----------KPYKCP 137
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C ++F NL H R HTGEK Y
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPY 162
Score = 57.5 bits (140), Expect = 1e-11
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
A+ ++P+ C C +F HL +H + H T E + ++C
Sbjct: 9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH----TGE----------KPYKCPE 54
Query: 65 CDRAFFDVYNLKLHMRIHTGEKKY 88
C ++F D +L H R HTGEK Y
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPY 78
Score = 55.9 bits (136), Expect = 4e-11
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
L+ H HT ++P+ C C +F + +L H + H T E + ++
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH----TGE----------KPYK 163
Query: 62 CKVCDRAFFDVYNLKLHMRIHTGEK 86
C C ++F L +H R HTG+K
Sbjct: 164 CPECGKSFSRRDALNVHQRTHTGKK 188
Score = 42.0 bits (100), Expect = 5e-06
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 26 TFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGE 85
+ + E + + C C ++F +L H R HTGE
Sbjct: 2 SEFGSSSSVAQAALE----PGE----------KPYACPECGKSFSRSDHLAEHQRTHTGE 47
Query: 86 KKY 88
K Y
Sbjct: 48 KPY 50
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 55.6 bits (135), Expect = 9e-12
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
L H H+ ++P+ C +C FK K + H + H + + C+
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH------------DGSVGKPYICQS 70
Query: 65 CDRAFFDVYNLKLHM-RIHTGEK 86
C + F +L H+ ++H+G
Sbjct: 71 CGKGFSRPDHLNGHIKQVHSGPS 93
Score = 51.7 bits (125), Expect = 3e-10
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
+ C +C F+ HL +H H + E + + C VC F
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH----SGE----------KPYSCPVCGLRFKR 47
Query: 72 VYNLKLHMRIHTGEKK 87
+ H+R H G
Sbjct: 48 KDRMSYHVRSHDGSVG 63
Score = 43.6 bits (104), Expect = 5e-07
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
C++C + F DVY+L H H+GEK Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPY 36
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 56.8 bits (138), Expect = 2e-11
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 4 QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
L H HT ++ F C+ C F K ++++H+ + KI +
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF------------HNIKICVYV 106
Query: 62 CKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
C C +AF LK+H HT + Y
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPY 135
Score = 53.4 bits (129), Expect = 4e-10
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 8 HMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK-- 63
A+ + ++C+ C + + L+ H H T E + F CK
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH----TGE----------KPFPCKEE 48
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C++ F +++L H HTGEK +
Sbjct: 49 GCEKGFTSLHHLTRHSLTHTGEKNF 73
Score = 52.2 bits (126), Expect = 9e-10
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 18/88 (20%)
Query: 4 QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
+L+ H+ HT ++PF C C F HL +H H T E ++F
Sbjct: 29 KLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH----TGE----------KNFT 74
Query: 62 CK--VCDRAFFDVYNLKLHMRIHTGEKK 87
C CD F N+K H K
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Score = 36.8 bits (86), Expect = 5e-04
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 4 QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
QLK H HT P+ C C F L L++H KVH K D
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH----AGYPCKK-------DDS 169
Query: 62 CKVCDRAFFDVYNLKLHMRIHT 83
C + + LK H
Sbjct: 170 CSFVGKTW--TLYLKHVAECHQ 189
Score = 27.9 bits (63), Expect = 0.54
Identities = 3/12 (25%), Positives = 5/12 (41%)
Query: 78 HMRIHTGEKKYI 89
+ K+YI
Sbjct: 3 EKALPVVYKRYI 14
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 53.3 bits (129), Expect = 5e-11
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 12 HTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK--VCDR 67
+ C+ C F +++L H K H + F C C +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHH-------------KKYQHIHQKSFSCPEPACGK 48
Query: 68 AFFDVYNLKLHMRIHTGEKKY 88
+F +LK HM++H+ + Y
Sbjct: 49 SFNFKKHLKEHMKLHSDTRDY 69
Score = 38.7 bits (91), Expect = 2e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 5 LKEHM-AVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
L H H + F C C +F KKHL++H K+H + RD+
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH----SDT----------RDYI 70
Query: 62 CKVCDRAF 69
C+ +
Sbjct: 71 CEFSGPSS 78
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 53.2 bits (129), Expect = 7e-11
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV 64
L H+ +H+ RP+ C C F K +++H +H T E + +C+V
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH----TGE----------KPHKCQV 62
Query: 65 CDRAFFDVYNLKLHMRIHTG 84
C +AF NL H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 47.4 bits (114), Expect = 1e-08
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKL 77
F C +C +FK L H +H + R + C+ C + F ++K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH----SDT----------RPYPCQYCGKRFHQKSDMKK 47
Query: 78 HMRIHTGEKKY 88
H IHTGEK +
Sbjct: 48 HTFIHTGEKPH 58
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 54.1 bits (131), Expect = 1e-10
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 4 QLKEHMA---VHTTDRPFVCNMCPST-----FKLKKHLRQHYKVHLKMDTLENHMKAVHE 55
QL H+ +H + FVC+ + FK + L H + H T E
Sbjct: 18 QLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH----TGE-------- 65
Query: 56 KIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
+ +C C +++ + NLK H+R HTGEK Y
Sbjct: 66 --KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Score = 51.4 bits (124), Expect = 1e-09
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVH-----------------LKMDT 45
L HM HT ++P C C ++ ++L+ H + H
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 46 LENHMKAVH--EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTG 84
H H EK + CK+ C + + D +L+ H++ G
Sbjct: 115 RAKHQNRTHSNEK--PYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 47.2 bits (113), Expect = 5e-08
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCD-----RAFF 70
+ C F ++ L H +H + ++F C R F
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSE-----------HIHGERKEFVCHWGGCSRELRPFK 50
Query: 71 DVYNLKLHMRIHTGEKKY 88
Y L +HMR HTGEK +
Sbjct: 51 AQYMLVVHMRRHTGEKPH 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.0 bits (125), Expect = 1e-10
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
+ C +C T + K L H + H A F C+ C + F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH-----------AETVAALRFPCEFCGKRFEK 50
Query: 72 VYNLKLHMRIHTGEKKY 88
++ H
Sbjct: 51 PDSVAAHRSKSHPALLL 67
Score = 40.9 bits (96), Expect = 3e-06
Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 2 KRQLKEHMAVHTT---DRPFVCNMCPSTFKLKKHLRQHYKVH 40
K L H H F C C F+ + H
Sbjct: 20 KASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.2 bits (126), Expect = 2e-10
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
LK H+ HT ++P+ C C F L +HY+ H T + FQC
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH----TGA----------KPFQC 78
Query: 63 KVCDRAFFDVYNLKLHMRIHT 83
VC+R+F +L LHM+ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQ 99
Score = 42.6 bits (101), Expect = 1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+L H HT +PF C +C +F HL H K H
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 41.1 bits (97), Expect = 4e-06
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 16 RPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC--KVCDRAFFD 71
R C+ C + HL+ H + H T E + ++C + CD F
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTH----TGE----------KPYKCTWEGCDWRFAR 59
Query: 72 VYNLKLHMRIHTGEKKY 88
L H R HTG K +
Sbjct: 60 SDELTRHYRKHTGAKPF 76
Score = 36.5 bits (85), Expect = 2e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
EK R C C + + +LK H+R HTGEK Y
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPY 46
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 49.5 bits (119), Expect = 1e-09
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFD 71
+ + C +C + + +HY ++ + C C + F
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTS------------HKRNVKVYPCPFCFKEFTR 52
Query: 72 VYNLKLHMRIHTG 84
N+ H++I
Sbjct: 53 KDNMTAHVKIIHK 65
Score = 38.7 bits (91), Expect = 2e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 50 MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRI--HTGEKKY 88
M+ E ++CKVC R + + N H K Y
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY 41
Score = 37.1 bits (87), Expect = 8e-05
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 5 LKEHM--AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
H + + + C C F K ++ H K+ K+
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.9 bits (115), Expect = 3e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C++C F + LK H+RIHTG
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 23.2 bits (51), Expect = 8.2
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GEK Y
Sbjct: 2 SSGSSGGEKPY 12
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 49.1 bits (118), Expect = 3e-09
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
LK H+ HT ++P+ C+ C F L +HY+ H T R FQC
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH----TGH----------RPFQC 68
Query: 63 KVCDRAFFDVYNLKLHMRIH 82
+ CDRAF +L LHM+ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 44.1 bits (105), Expect = 3e-07
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAF 69
T C T+ HL+ H + H T E + + C C F
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH----TGE----------KPYHCDWDGCGWKF 47
Query: 70 FDVYNLKLHMRIHTGEKKY 88
L H R HTG + +
Sbjct: 48 ARSDELTRHYRKHTGHRPF 66
Score = 41.7 bits (99), Expect = 2e-06
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHL 41
+L H HT RPF C C F HL H K H
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 47.5 bits (114), Expect = 6e-09
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNL 75
R FVC +C F ++HL++HY+ H T E + + C +C+RAF L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH----TNE----------KPYPCGLCNRAFTRRDLL 46
Query: 76 KLHM-RIHTGEK 86
H +IH+G
Sbjct: 47 IRHAQKIHSGNL 58
Score = 41.3 bits (98), Expect = 1e-06
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F C+VC RAF +LK H R HT EK Y
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPY 31
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHY-KVH 40
LK H HT ++P+ C +C F + L +H K+H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 46.2 bits (109), Expect = 3e-08
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 21/85 (24%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
+ +H DR C+ C F + L + + C+
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR---------------------KTPMCE 43
Query: 64 VCDRAFFDVYNLKLHMRIHTGEKKY 88
C + L +G+K
Sbjct: 44 KCRKDSCQEAALNKDEGNESGKKTS 68
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 8e-08
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+ C F V +L+ H+ IHTG
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 35.6 bits (83), Expect = 2e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
++P+ C C + F HLR H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 25.2 bits (56), Expect = 1.6
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GEK Y
Sbjct: 2 SSGSSGGEKPY 12
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 45.3 bits (107), Expect = 1e-07
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 11 VHTTDRPFVCNMCPSTFKLKKHLRQHY-KVHLKMDTLENHMKAVHEKIRDFQCKVCDRAF 69
+ C TF L H H+ NH +C ++F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH------VCYWEECPREGKSF 72
Query: 70 FDVYNLKLHMRIHTGEK 86
Y L H+R+HTGEK
Sbjct: 73 KAKYKLVNHIRVHTGEK 89
Score = 26.1 bits (57), Expect = 1.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 2 KRQLKEHMAVHTTDRPFVC 20
K +L H+ VHT ++
Sbjct: 75 KYKLVNHIRVHTGEKSGPS 93
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.8 bits (103), Expect = 2e-07
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C++C + F DVY+L H H+GEK Y
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 31.1 bits (70), Expect = 0.011
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
T + C +C F+ HL +H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 25.7 bits (56), Expect = 0.95
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 5 LKEHMAVHTTDRPFVCNMC 23
L H H+ ++P+
Sbjct: 28 LNRHKLSHSGEKPYSSGPS 46
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.4 bits (103), Expect = 3e-07
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 5 LKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQC 62
L ++ RP+ C + C F L +H ++H T + + FQC
Sbjct: 9 LLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIH----TGQ----------KPFQC 52
Query: 63 KVCDRAFFDVYNLKLHMRIHT 83
++C R F +L H+R HT
Sbjct: 53 RICMRNFSRSDHLTTHIRTHT 73
Score = 39.6 bits (93), Expect = 1e-05
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+L H+ +HT +PF C +C F HL H + H
Sbjct: 36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 37.7 bits (88), Expect = 5e-05
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 42 KMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
M+ L N++ + + C V CDR F L H+RIHTG+K +
Sbjct: 5 PMNNLLNYVV-PKMR--PYACPVESCDRRFSRSDELTRHIRIHTGQKPF 50
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 41.9 bits (99), Expect = 7e-07
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C ++F +L +H R +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 31.9 bits (73), Expect = 0.005
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ P++C C +F + L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 43.2 bits (101), Expect = 8e-07
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFK----LKKHLR--QHYKVHLKMDTLENH-------- 49
K + ++ T F C C + + L H+ HY+ N
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 50 -----MKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 80
M+ + + +C C +F + +L +HM
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 31.3 bits (70), Expect = 0.027
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++ F+CK C A+ + L +HM TG +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRD 47
Score = 30.5 bits (68), Expect = 0.048
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
KR L E + C C +F+ + L H
Sbjct: 65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 29.0 bits (64), Expect = 0.20
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 73 YNLKLHMRIHTGEKKY 88
+ KL+ I TG K+
Sbjct: 5 SSGKLYGSIFTGASKF 20
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+ CD F +L+LH +H GEK
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPS 41
Score = 33.7 bits (78), Expect = 0.001
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++ + C C F LR H VH
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 23.3 bits (51), Expect = 8.4
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GEK +
Sbjct: 3 SGSSGMGEKTW 13
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-06
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ E + +QC C ++F Y L H HT EK
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPS 41
Score = 36.0 bits (84), Expect = 1e-04
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++P+ C+ C +F L QH+ H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 24.0 bits (53), Expect = 3.8
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GEK Y
Sbjct: 3 SGSSGEGEKPY 13
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 40.2 bits (95), Expect = 2e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F C C++AF L +H + H EK
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 40.2 bits (95), Expect = 3e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ F+C C ++F NL H RIHTGEK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSG 41
Score = 34.1 bits (79), Expect = 7e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +PF C C +F+ K +L H ++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 3e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ R +C C + F N H RIHTGEK
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS 41
Score = 33.3 bits (77), Expect = 0.001
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ +R C+ C F + QH ++H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 24.4 bits (54), Expect = 3.1
Identities = 2/11 (18%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GE+ +
Sbjct: 3 SGSSGHGERGH 13
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 3e-06
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
QC C R F +L H RIHTGEK
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPS 41
Score = 38.7 bits (91), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++ + C+ C F LK HL QH ++H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 23.3 bits (51), Expect = 7.3
Identities = 1/11 (9%), Positives = 3/11 (27%)
Query: 78 HMRIHTGEKKY 88
+ K +
Sbjct: 3 SGSSGSSTKSH 13
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-06
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C +AF D NL H +IHTGEK
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
Score = 32.1 bits (74), Expect = 0.004
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F + +L H K+H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-06
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF Y L H R H GEK
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS 41
Score = 34.0 bits (79), Expect = 7e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T + P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.9 bits (94), Expect = 4e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+ C ++F +L LH RIHTG
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.2 bits (74), Expect = 0.004
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ R + C C +F+ K L H ++H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.9 bits (94), Expect = 4e-06
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
FQCK C F +L H+R H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPS 41
Score = 34.1 bits (79), Expect = 7e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C C F L +H + H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 24.5 bits (54), Expect = 3.0
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK +
Sbjct: 3 SGSSGTGEKPF 13
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-06
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ + C VC +AF +L H+R+HT E
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS 41
Score = 36.7 bits (86), Expect = 6e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN+C F L HL QH +VH
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C VC +AF +L +H RIH+G+K
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C++C F ++ L H ++H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 5e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C+++F L +H R+HT EK
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPS 41
Score = 34.4 bits (80), Expect = 5e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 22.9 bits (50), Expect = 9.6
Identities = 2/11 (18%), Positives = 2/11 (18%)
Query: 78 HMRIHTGEKKY 88
G Y
Sbjct: 3 SGSSGAGVNPY 13
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++CK C + F + +L H R+HTGE+
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSS 41
Score = 34.8 bits (81), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + +P+ C C TF HL QH +VH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 23.3 bits (51), Expect = 6.7
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+G+K Y
Sbjct: 3 SGSSGSGKKPY 13
Score = 22.9 bits (50), Expect = 9.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 2 KRQLKEHMAVHTTDRPFVCN 21
L +H VHT +R +
Sbjct: 25 IGHLNQHKRVHTGERSSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-06
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ F+C +C ++F L H +HT EK
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C++C +F + L +H VH
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C VC +AF D NL H +IHTGEK
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 33.2 bits (77), Expect = 0.002
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +RP++C +C F + +L +H K+H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 26.3 bits (59), Expect = 0.51
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGE+ Y
Sbjct: 3 SGSSGTGERPY 13
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 6e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C +AF NL +H R HTGE
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F K +L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-06
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F C C +AF D L H RIHTGEK
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C C F L QH ++H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 39.5 bits (93), Expect = 6e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF +L +H+R+HTG
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.1 bits (79), Expect = 5e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
++P+ C+ C F K L H +VH
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 27.1 bits (61), Expect = 0.27
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
GEK Y
Sbjct: 2 SSGSSGGEKPY 12
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C VC ++F +L +H RIHTGEK
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C++C +F+ L H ++H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+ C + + NL +H R+H GEK
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTS 41
Score = 33.6 bits (78), Expect = 9e-04
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ C C + + +L H +VH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 7e-06
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C+ C + + +NL +H ++HTGE+
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C + K +L H KVH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C VC +AF +L H R+H+GEK
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C++C F L QH +VH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ F+CK C +AF +L H+RIHTGEK
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++PF C C F+ HL H ++H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 8e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+C C +AF L +H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHS 41
Score = 34.1 bits (79), Expect = 7e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P C C F K L H + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 22.9 bits (50), Expect = 9.8
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
TGEK
Sbjct: 3 SGSSGTGEKPC 13
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 8e-06
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C +C ++F L +H +IHTGEK
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 34.1 bits (79), Expect = 7e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C++C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-06
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ F+C C +AF L +H +IHTGEK
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPS 41
Score = 34.4 bits (80), Expect = 6e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T + F C C F K L H K+H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 39.7 bits (93), Expect = 9e-06
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 54 HEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKYI 89
+IR C C + +F +LK H R HTGEK +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFS 49
Score = 38.5 bits (90), Expect = 2e-05
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 2 KRQLKEHMAVHTTDRPFVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRD 59
+ R +C+ C T+ HL+ H + H T E +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH----TGE----------KP 47
Query: 60 FQCKV--CDRAFFDVYNLKLHMRIH 82
F C C+R F L H R H
Sbjct: 48 FSCSWKGCERRFARSDELSRHRRTH 72
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 9e-06
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C ++F L +H RIHTGE
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41
Score = 34.4 bits (80), Expect = 5e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C+ C +F K L H ++H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C VC + F +L+ H R+HTGEK
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41
Score = 34.4 bits (80), Expect = 5e-04
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++ + C++C F HL+ H +VH
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F C C + F NL +H +IHTGE+
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPS 41
Score = 34.8 bits (81), Expect = 3e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T + PF+C+ C F K +L H K+H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++CKVC +AF +L H + HTGEK
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 34.8 bits (81), Expect = 3e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C +C F K HL QH K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ F+C C + F +L +H RIHTGEK
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS 41
Score = 34.4 bits (80), Expect = 5e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + F CN C TF L H ++H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.7 bits (91), Expect = 1e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T + + CN C F HL +H K+H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 36.4 bits (85), Expect = 8e-05
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ + C C +AF +++L H +IHT +
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP 41
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
R ++C C +AF L +H RIHTGEK
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPS 41
Score = 35.6 bits (83), Expect = 2e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 39.5 bits (93), Expect = 1e-05
Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 19/83 (22%)
Query: 4 QLKEHMAVHTTDRPFVCN--MCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQ 61
QLK H HT P+ C C F L L++H K VH +
Sbjct: 18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK--------------VHAGYPCKK 63
Query: 62 CKVCDRAF--FDVYNLKLHMRIH 82
C + +Y LK H
Sbjct: 64 DDSCSFVGKTWTLY-LKHVAECH 85
Score = 37.6 bits (88), Expect = 7e-05
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 18/75 (24%)
Query: 18 FVCNM--CPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKV--CDRAFFDVY 73
+VC+ C FK L+ H H T + ++C CD+ F
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSH----TQQ----------LPYECPHEGCDKRFSLPS 47
Query: 74 NLKLHMRIHTGEKKY 88
LK H ++H G
Sbjct: 48 RLKRHEKVHAGYPCK 62
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF L +H + HTGE+
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHS 41
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C+ C F K L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 26.7 bits (60), Expect = 0.38
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR 67
+ + +P++C C F HL H+K VH R +C+V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNG-------------HIKQVHTSERPHKCQVWVS 49
Query: 68 AF 69
Sbjct: 50 GP 51
Score = 35.6 bits (83), Expect = 2e-04
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHM-RIHTGEKKY 88
+ + + C+ C + F +L H+ ++HT E+ +
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH 42
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C C +AF NL +H R HTGEK
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C+ C F K +L H + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C +AF NL H RIHTGEK
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F K +L QH ++H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C ++F L++H + HTGE+
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C+ C +F K LR H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C C ++F L H RIHTGEK
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPS 41
Score = 34.0 bits (79), Expect = 7e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C C +F + L H ++H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 26.7 bits (60), Expect = 0.41
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK +
Sbjct: 3 SGSSGTGEKPF 13
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF D + H R+HTG++
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
Score = 32.6 bits (75), Expect = 0.003
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F QH ++H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 51 KAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ R F+C C + F +L H+R+H+ EK
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS 41
Score = 37.9 bits (89), Expect = 3e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + +RPF CN C F + HL H ++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 23.3 bits (51), Expect = 7.8
Identities = 2/11 (18%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+GE+ +
Sbjct: 3 SGSSGSGERPF 13
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ CK C ++F L H R+H+GEK
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPS 41
Score = 33.7 bits (78), Expect = 0.001
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++ + C C +F L +H ++H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ + C C +AF NL H +IHT +K
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P++C C F ++ +L +H K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+ C + F +L H +HTGEK
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPS 41
Score = 32.5 bits (75), Expect = 0.003
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F ++ L H+ VH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 26.7 bits (60), Expect = 0.38
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.5 bits (89), Expect = 2e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 42 KMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 87
K L+ H++ H +R + C C+ +F NL HM+ KK
Sbjct: 13 KPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 35.8 bits (82), Expect = 2e-04
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 KRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
LK+H+ HT RP+ C C +FK K +L +H K
Sbjct: 14 PSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 28.9 bits (64), Expect = 0.073
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C+ C LK H+R HT + Y
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPY 30
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++CK C +AF +L H R+HTGEK
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
Score = 34.4 bits (80), Expect = 5e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F HL QH +VH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF NL H IHTGEK
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F+ +L H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + + +L H R+HTGEK
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ C C +K + L H +VH
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 26.3 bits (59), Expect = 0.51
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+GEK Y
Sbjct: 3 SGSSGSGEKPY 13
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C +AF L +HMR H+GEK
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 34.1 bits (79), Expect = 6e-04
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++P+ C+ C F K +L H + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C +AF +L H IHTG+K
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 33.3 bits (77), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F ++ L H +H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C+VC +AF +L H +H+GE+
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
Score = 34.0 bits (79), Expect = 8e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C +C F++ HL QH+ VH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C +AF +L +H H+GEK
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPS 41
Score = 32.5 bits (75), Expect = 0.003
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F+ + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C C + F L +H ++HTGEK
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C C F + L H+K+H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 26.7 bits (60), Expect = 0.42
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK +
Sbjct: 3 SGSSGTGEKPF 13
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.1 bits (89), Expect = 2e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ C C TF L QH K+H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 35.4 bits (82), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C F D L H ++HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGP 39
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+QC C +AF L H R+HTGEK
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 33.7 bits (78), Expect = 9e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +P+ CN C F L +H +VH
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 26.7 bits (60), Expect = 0.42
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
TG K Y
Sbjct: 3 SGSSGTGGKPY 13
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C+ C + F L H R+HTGEK
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
Score = 34.4 bits (80), Expect = 6e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++PF C C F L H +VH
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C + F +L H IHTGEK
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ CK C ++F L H R+H+GEK
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPS 41
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C +F+ L +H +VH
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C+ C + F+ H R H+GEK
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
Score = 33.3 bits (77), Expect = 0.001
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++PF C C F H + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 26.0 bits (58), Expect = 0.69
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+GEK +
Sbjct: 3 SGSSGSGEKPF 13
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C +AF +L H IHTGEK
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
Score = 32.5 bits (75), Expect = 0.003
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +P++CN C F + L H +H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.6 bits (88), Expect = 3e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
C C + F + L++H R+H GEK
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 35.3 bits (82), Expect = 3e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++ C+ C F LR H +VH
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C +AF L H RIHTGEK
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
Score = 34.4 bits (80), Expect = 6e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+VC+ C F L L +H ++H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 26.7 bits (60), Expect = 0.46
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+GEK Y
Sbjct: 3 SGSSGSGEKPY 13
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ ++C C + F +L H IHTGEK
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C+ C F+ HL +H +H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 3e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + PF C+ C F + +L QH + H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 35.6 bits (82), Expect = 2e-04
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEK 86
F+C CDR F L H R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C+ C +AF L+ H RIHTGEK
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ C C F L++H ++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 27.1 bits (61), Expect = 0.30
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C +AF L +H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGP 41
Score = 34.4 bits (80), Expect = 4e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +P+VCN C F+ K +L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F L H +IHTGEK
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPS 41
Score = 34.4 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++ + CN C F L QH K+H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
F+C C +++ +L H R+HTGEK
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++PF C C ++ + HL QH +VH
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF L +H RIH GEK
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPS 41
Score = 34.8 bits (81), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +R + C+ C F K L H ++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
FQC+ C + F +L H R+HTGEK
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 7 EHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++PF C C F HL H +VH
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 4e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C + F +L H++ H EK
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSS 41
Score = 37.1 bits (87), Expect = 4e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + +RP+ CN C F HL +H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
R ++C C +AF +L H R HTGEK
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPS 41
Score = 34.1 bits (79), Expect = 6e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T RP+ C C FK K L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F L H RIHTGEK
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F+ +L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 26.3 bits (59), Expect = 0.55
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F +L H RIHTG K
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPS 41
Score = 34.4 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F HL H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 26.3 bits (59), Expect = 0.52
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF L H RIHTGEK
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPS 41
Score = 33.6 bits (78), Expect = 9e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F L +H ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 27.1 bits (61), Expect = 0.32
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+C+ C ++F L +H RIHTGE
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPS 41
Score = 33.7 bits (78), Expect = 0.001
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P C C +F L H ++H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 26.7 bits (60), Expect = 0.36
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK +
Sbjct: 3 SGSSGTGEKPH 13
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C + F L +H R HTG K
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
Score = 34.8 bits (81), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +P+ C+ C TF LK L H + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
R +C C ++F +L H RIHTGEK
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T +RP CN C +F HL QH ++H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C + F L H R HTGEK
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 34.8 bits (81), Expect = 3e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ CN C TF K L H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.9 bits (86), Expect = 6e-05
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 48 NHMKAVHEKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEKKY 88
+ + F C C F L H R H+G K
Sbjct: 2 SSGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPS 43
Score = 26.1 bits (58), Expect = 0.63
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 4 QLKEHMAVHTTDRPFVCN 21
+L H H+ +P +
Sbjct: 29 ELSRHRRSHSGVKPSGPS 46
Score = 26.1 bits (58), Expect = 0.79
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 78 HMRIHTGEKKYI 89
TGEK +
Sbjct: 3 SGSSGTGEKPFA 14
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF +L H RIHTG +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
Score = 32.9 bits (76), Expect = 0.002
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ C+ C F HL +H ++H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 7e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
+ C C ++F +L H RIHTGEK
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPS 41
Score = 35.2 bits (82), Expect = 3e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P++CN C +F K HL +H ++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.3 bits (85), Expect = 8e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF L H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGP 39
Score = 32.1 bits (74), Expect = 0.004
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + P+ C+ C F K L H + H
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTH 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F +L H RIHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ CN C F HL H+++H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 9e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F +L H IHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 26.3 bits (59), Expect = 0.53
Identities = 5/11 (45%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
TGEK Y
Sbjct: 3 SGSSGTGEKPY 13
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 1e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F +L H IHTGEK
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F HL +H +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.8 bits (83), Expect = 1e-04
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKM 43
T +PF C C +F HL H K H+ +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 30.8 bits (70), Expect = 0.012
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIH 82
I+ FQC CDR+F +L LH + H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 23.4 bits (51), Expect = 6.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
R TG K +
Sbjct: 2 STRGSTGIKPF 12
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 36.0 bits (84), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C +AF L +H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGP 41
Score = 33.3 bits (77), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ + ++P+ CN C F K L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.1 bits (61), Expect = 0.26
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 78 HMRIHTGEKKY 88
+GEK Y
Sbjct: 3 SGSSGSGEKPY 13
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F +L H R+HTG K
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPS 41
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T ++P+ CN C F HL +H +VH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 35.7 bits (81), Expect = 2e-04
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ ++P+ C +C FK K + H + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 29.1 bits (64), Expect = 0.068
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHTG 84
+ + C VC F + H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (81), Expect = 2e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 10 AVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLK 42
+ ++ F CN C TF K+L QH ++H +
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 26.7 bits (58), Expect = 0.53
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 52 AVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 83
+ +K + F+C C++ F L H RIHT
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 2e-04
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKKY 88
++C C + F L H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGP 41
Score = 34.0 bits (79), Expect = 6e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
+ T + P+ C C F K L H K H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 23.2 bits (51), Expect = 8.0
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 78 HMRIHTGEKKY 88
TGE Y
Sbjct: 3 SGSSGTGENPY 13
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 34.6 bits (80), Expect = 3e-04
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
R F C+VC RAF +LK H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.036
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
R FVC +C F ++HL++HY+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 34.7 bits (79), Expect = 4e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
++ + C C R F D L+ H+RIHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 24.3 bits (52), Expect = 2.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
+P+VC C F L++H ++H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.4 bits (77), Expect = 0.001
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 86
R F C C + F L+ H R HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.0 bits (82), Expect = 0.001
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 53 VHEKIRDFQCKVCDRAFFDVYNLKLHMRIH 82
+QC VC F +L H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 0.052
Identities = 7/62 (11%), Positives = 16/62 (25%)
Query: 1 MKRQLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDF 60
++ + C++C + L H H + + I +F
Sbjct: 164 KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEF 223
Query: 61 QC 62
Sbjct: 224 IS 225
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.5 bits (75), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 52 AVHEKI----RDFQCKVCDRAFFDVYNLKLHMR-IHTGEKKY 88
+ ++C C +AF +L H R HTGEK
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPS 42
Score = 30.6 bits (70), Expect = 0.014
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
+ T +P+ C C F L +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.004
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 12 HTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTL 46
+ RPFVC +C S F K + +H KVH DTL
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH--TDTL 34
Score = 27.8 bits (61), Expect = 0.14
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 HEKIRDFQCKVCDRAFFDVYNLKLHMRIHT 83
R F C++C AF N H+++HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (71), Expect = 0.006
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 14 TDRPFVCNMCPSTFKLKKHLRQHYKVH 40
T + + C+ C +TF L+KHL QH K H
Sbjct: 9 TRKRYECSKCQATFNLRKHLIQHQKTH 35
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 31.2 bits (71), Expect = 0.008
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 55 EKIRDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 86
K + C + C + + +L+ H+R HTGE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.010
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 87
+ QC+ C FF +L H +H G+K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 31.0 bits (69), Expect = 0.010
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
+ ++C C A NL +H+R HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.8 bits (66), Expect = 0.024
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 16 RPFVCNMCPSTFKLKKHLRQHYKVH 40
RP+ C++C F LK + HY+VH
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 25.1 bits (54), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTG 84
+R + C VC + F + ++ H R+HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.9 bits (69), Expect = 0.030
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCK 63
+ + + C C H +D+ ++ + C
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFH------VDSEHPNVVLNS----SYVCV 54
Query: 64 VCDRAFFDVYNLKLH-MRIHTGEKKYIFIVVKK 95
C+ L H ++ H GE+ + +VK+
Sbjct: 55 ECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR 87
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.043
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 57 IRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
+ F C+ C++ F ++L+ H+RIHT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 23.7 bits (50), Expect = 5.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLK 42
F C C FK K L+ H ++H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.050
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 58 RDFQCKV--CDRAFFDVYNLKLHMRIHTGEK 86
+ F+C C + F YN++ H++ H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.0 bits (57), Expect = 0.82
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 15 DRPFVC--NMCPSTFKLKKHLRQHYKVHLK 42
D+ F C C TFK + ++R H + HL+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.1 bits (64), Expect = 0.053
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
+ F+C +C+ A NLK HM H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.0 bits (56), Expect = 0.66
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
++ +PF C++C + K +L+ H H
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRH 32
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 28.2 bits (62), Expect = 0.093
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 61 QCKVCDRAFFDVYNLKLHMRIHTGEK 86
QC +C +AF +L H+R HTGEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.9 bits (66), Expect = 0.11
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 16/73 (21%)
Query: 8 HMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKAVHEKIRDFQCKVCDR 67
+ FVC +C F L+QH + C VC +
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----------------HTKVCPVCKK 108
Query: 68 AFFDVYNLKLHMR 80
F + H+
Sbjct: 109 EFTSTDSALDHVC 121
Score = 28.7 bits (63), Expect = 0.26
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 37 YKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEKK 87
+ L ++ + + I F C +C F +LK H+R K
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV 102
Score = 24.9 bits (53), Expect = 5.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
LK+H+ T+ VC +C F H
Sbjct: 90 LKQHI--RYTEHTKVCPVCKKEFTSTDSALDH 119
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.12
Identities = 5/50 (10%), Positives = 18/50 (36%)
Query: 37 YKVHLKMDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
Y L + E + + + Q + ++ + +L+ + + +
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.4 bits (65), Expect = 0.23
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 4 QLKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
Q H + ++ + LR +
Sbjct: 195 QETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.1 bits (64), Expect = 0.17
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 5 LKEHMAVHTTDRPFVCNMCPSTFKLKKHLRQH 36
+EH + + C C TFK + +H
Sbjct: 58 KQEHES-KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 27.2 bits (59), Expect = 0.68
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 16/92 (17%)
Query: 6 KEHMAVHTTDRPFVCNMCPSTFKLKKHLRQHYKVH-------------LKMDTLENHMKA 52
+ + C +C + H ++ + + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE-- 62
Query: 53 VHEKIRDFQCKVCDRAFFDVYNLKLH-MRIHT 83
+ + C C R F +++ H + +H
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.21
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
+C+ C + F L H +H GE
Sbjct: 13 SECQECGKIFRHSSLLIEHQALHAGE 38
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 0.35
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHY--KVHLKM 43
DR C +C TF HY K H+K
Sbjct: 89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKN 121
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.6 bits (59), Expect = 0.37
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 58 RDFQCKVCDRAFFDVYNLKLHMRIHTGEK 86
R + C C R F L HM +H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 28.5 bits (63), Expect = 0.38
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 15 DRPFVCNMCPSTF-----KLKKHLRQHYKVHLK 42
C C TF KLK HL++ Y L
Sbjct: 167 QEDLKCWRCGETFGRHFTKLKAHLQEEYDDWLD 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.44
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 29 LKKHLRQH----YKVHLKMDTLENHMKAVHEKIRD---FQCKVCDRAFF----DVY---N 74
++K ++ ++L++ + A+H I D D Y +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 75 LKLHMR-IHTGEKKYIF 90
+ H++ I E+ +F
Sbjct: 477 IGHHLKNIEHPERMTLF 493
Score = 26.7 bits (58), Expect = 2.4
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 17 PFVCNMCPSTFKLKKHLRQHYKVHLKMDTLENHMKA 52
P ++ + + ++K H+ D L +++
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK-HVNCDKLTTIIES 361
Score = 26.0 bits (56), Expect = 4.2
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 78 HMRIHTGEKKYIFIVVKKIIVVIYAKKFSLDIEI 111
HM TGE +Y + K I+ V + F + +
Sbjct: 6 HMDFETGEHQYQY---KDILSV-FEDAFVDNFDC 35
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.9 bits (56), Expect = 0.85
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 15 DRPFVCNMCPSTFKLKKHLRQHY 37
D+P+ C++C +K + L HY
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHY 27
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.5 bits (60), Expect = 1.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 60 FQCKVCDRAFFDVYNLKLHMR 80
+ C VC+ F + L H+R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 25.4 bits (55), Expect = 1.3
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 13 TTDRPFVCNM--CPSTFKLKKHLRQHYKVH 40
+ D+PF+C C F + HL H H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.0 bits (54), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 15 DRPFVCNM--CPSTFKLKKHLRQHYKVHLK 42
DRP+ C+ C F L +H K H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 26.9 bits (59), Expect = 1.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 28 KLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
K + H ++ K + D +E+ K VH IR
Sbjct: 218 KFQAHFSEYLKKGIDADGMESLYKKVHAAIR 248
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 25.6 bits (55), Expect = 2.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGE 85
+QCK CD L H+ IH E
Sbjct: 26 YQCKHCDSKLQSTAELTSHLNIHNEE 51
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.9 bits (53), Expect = 2.3
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 14 TDRPFVCNMCPSTFKLKKHLRQHYKV 39
+++P C +C + + ++LR+H ++
Sbjct: 21 SEQPATCPICYAVIRQSRNLRRHLEL 46
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein
binding; NMR {Bacillus anthracis}
Length = 158
Score = 26.2 bits (58), Expect = 2.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 66 DRAFFDVYNLKLHMR--IHTGEKKYIFIVVKKIIV 98
F D+ +LK + ++ E +Y + V V
Sbjct: 80 GVLFSDIASLKKGDKIYLYDNENEYEYAVTGVSEV 114
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 2.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLK 42
F C CP F HL H +H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.0 bits (51), Expect = 3.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIH 82
++C +C+R+F + L H R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.1 bits (52), Expect = 3.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 18 FVCNMCPSTFKLKKHLRQHYKVHLK 42
F C CP F HL +H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHEL 27
Score = 23.0 bits (49), Expect = 8.1
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 60 FQCKVCDRAFFDVYNLKLHMRIHTGEKK 87
F C C + F +L H+ +H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.3 bits (54), Expect = 3.5
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 43 MDTLENHMKAVHEKIRDFQCKVCDRAFFDVYNLKLHMR 80
+ L+ HM+ + +C+ C + F L H
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 4.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 13 TTDRPFVCNMCPSTFKLKKHLRQHYKVH 40
++ + +C+MC FK K L+ H +H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 25.4 bits (55), Expect = 4.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 28 KLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
KK Q+ K + D +E K H IR
Sbjct: 218 AYKKQFSQYIKNSVTPDMMEEMYKKAHAAIR 248
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 23.6 bits (50), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 15 DRPFVCNMCPSTFK----LKKHLRQH 36
++PF C++CP + + KHLR H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 25.3 bits (55), Expect = 5.2
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 66 DRAFFDVYNLKLHMR--IHTGEKKYIFIVVKKIIV 98
F ++ LK + I ++ + V + +V
Sbjct: 125 KELFSNLKKLKKGDKFYIQNIKETIAYQVDQIKVV 159
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding
protein, C2H2 type zinc-finger, structural genomics;
NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 24.4 bits (53), Expect = 5.6
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 18 FVCNMCPSTFKLKKHLRQHY 37
F CN C + K K + +H
Sbjct: 11 FTCNACGESVK-KIQVEKHV 29
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A
{Corynebacterium glutamicum}
Length = 361
Score = 24.7 bits (55), Expect = 9.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 28 KLKKHLRQHYKVHLKMDT 45
L + +H +V +K+D+
Sbjct: 108 ALIETDAEHIRVSIKIDS 125
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 24.7 bits (53), Expect = 9.5
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 28 KLKKHLRQHYKVHLKMDTLENHMKAVHEKIR 58
+ + + + + D+LE+ + HE IR
Sbjct: 218 RFSELFKGYLADDIDADSLEDIYTSAHEAIR 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.141 0.436
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,837,536
Number of extensions: 98092
Number of successful extensions: 1140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 484
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.2 bits)