BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6404
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)
Query: 48 CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
C + +G + DMRFV+CA ICY+L++WSGMD + + +I RS+SYD QG LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221
Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
ST+C +ASL LM KL+ +F ++ +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265
Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
KPVDTCY+FW+GA+L +L + + E+ +L TQ + GG +KW D+ D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
+ ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
Q + GG +KW D+ D LH Y
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 138 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 197
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 198 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 237
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 238 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 293
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 127 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 186
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 187 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 246
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 247 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 303
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P+ P + L+R++ V
Sbjct: 304 QIK-PVSPVFCMPEEVLQRVNVQPELV 329
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK---------WSDTQADILHTYL 224
+W + ++ +++E +L+ + QH GG+S ++ + IL Y
Sbjct: 49 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYD 108
Query: 225 GEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDE 284
+ + ++SL+ ++ F G +DT ++F A+L++L I+
Sbjct: 109 SIHVINVDKVVAYVQSLQ-----KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV 163
Query: 285 ERLLLSVLDTQHMTGGLS 302
E+ + VL + GG
Sbjct: 164 EKAIEFVLSCMNFDGGFG 181
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 128 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 187
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 247
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 248 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 304
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P+ P + L+R++ V
Sbjct: 305 QIK-PVSPVFCMPEEVLQRVNVQPELV 330
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK---------WSDTQADILHTYL 224
+W + ++ +++E +L+ + QH GG+S ++ + IL Y
Sbjct: 50 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYD 109
Query: 225 GEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDE 284
+ + ++SL+ ++ F G +DT ++F A+L++L I+
Sbjct: 110 SIHVINVDKVVAYVQSLQ-----KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV 164
Query: 285 ERLLLSVLDTQHMTGGLS 302
E+ + VL + GG
Sbjct: 165 EKAIEFVLSCMNFDGGFG 182
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 149 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 207
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 208 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 247
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 248 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 292
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 211 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 270
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 271 NKLVDGCYSFWQAGLLPLLHRA 292
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 150 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 208
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 209 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 248
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 249 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 293
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 212 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 271
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 272 NKLVDGCYSFWQAGLLPLLHRA 293
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 174 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 232
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 233 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 272
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 273 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 317
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 236 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 295
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 296 NKLVDGCYSFWQAGLLPLLHRA 317
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 170 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 228
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 229 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 268
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 269 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 313
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 232 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 291
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 292 NKLVDGCYSFWQAGLLPLLHRA 313
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ + +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + R ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ + +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + R ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ + +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + R ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ + +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + R ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 28/200 (14%)
Query: 53 GDCDMRFVFCACSICYIL--DDW-----------SGMDRARCLEFIFRSLSYDGAFGQGP 99
G+ D+R + A I +++ DD + +D +FI ++ +G F
Sbjct: 155 GEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTI 214
Query: 100 CLESHGGSTYCALASLALMN-KLDTLRPTQASL------YLDLVKSFLFYSPQIESLKRW 152
ESH G T+CA+ASL L+N L+ L+ T+ L Y + + + +
Sbjct: 215 MDESHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNY 274
Query: 153 LIFRQR--SGFQGRPNKPVDTCYTFWIGASLSIL--NAATWID---EERLLLSVLDTQHM 205
+R GF GR NK DTCY++W SL + N +D E LL+ Q +
Sbjct: 275 EYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQ-L 333
Query: 206 TGGLSKWSDTQADILHTYLG 225
GG + D+ D +H+YL
Sbjct: 334 FGGFGRDPDSTPDPMHSYLA 353
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 252 GFQGRPNKPVDTCYTFWIGASLSIL--NSATWID---EERLLLSVLDTQHMTGGLSKWSD 306
GF GR NK DTCY++W SL + N +D E LL+ Q + GG + D
Sbjct: 284 GFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQ-LFGGFGRDPD 342
Query: 307 TQADILHTYLEAMS 320
+ D +H+YL S
Sbjct: 343 STPDPMHSYLALAS 356
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 42/159 (26%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFG---------------- 96
G+ D+R +C + +LD + +F+ +Y+G F
Sbjct: 192 GEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAF 251
Query: 97 ---QGPC----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL 149
+ C E+HGG T C+L S L+ + + SF S +
Sbjct: 252 PTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVP-------------LPSFPL-SIDANAA 297
Query: 150 KRWLIFRQR-----SGFQGRPNKPVDTCYTFWIGASLSI 183
RW + +Q GF+GR NK VD CY++W+G +
Sbjct: 298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV 336
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 243 RWLIFRQR-----SGFQGRPNKPVDTCYTFWIGASLSI 275
RW + +Q GF+GR NK VD CY++W+G +
Sbjct: 299 RWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV 336
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 208 GLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTF 267
LS+ S D+L +G P ++ ++++++++ L+ RQ F+GRP+ T T
Sbjct: 40 ALSRMSQRYGDVLQIRIGS---TPVLVLSRLDTIRQALV-RQGDDFKGRPDLYTSTLITD 95
Query: 268 WIGASLSILNSATWIDEERLLLSVLDT 294
+ S + W RL + L+T
Sbjct: 96 GQSLTFSTDSGPVWAARRRLAQNALNT 122
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 238 IESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSV 291
I +L I + SG G P YT W N+ TW + +R +LS
Sbjct: 37 IRTLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSA 90
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 146 IESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSV 199
I +L I + SG G P YT W N TW + +R +LS
Sbjct: 37 IRTLSIDAIEKANSGHPGXPXGAAPXAYTLWTQFXKHNPNNPTWFNRDRFVLSA 90
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 196 LLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQG 255
+L++ H+ LS+ S D+L +G P ++ + ++++++ L+ RQ F+G
Sbjct: 25 MLTLGKNPHL--ALSRMSQQYGDVLQIRIGS---TPVVVLSGLDTIRQALV-RQGDDFKG 78
Query: 256 RPNKPVDTCYTFWIGASLSILNSATWIDEERL 287
RP+ T + S S + W RL
Sbjct: 79 RPDLYTFTLISNGQSMSFSPDSGPVWAARRRL 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,249,552
Number of Sequences: 62578
Number of extensions: 407118
Number of successful extensions: 982
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 53
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)