BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6404
(361 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 19/204 (9%)
Query: 24 LALVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCL 82
L+ V + LR+ SF C + +G + DMRFV+CA ICY+L++WSGMD + +
Sbjct: 139 LSRVNKEACLAGLRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197
Query: 83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
+I RS+SYD QG LESHGGST+C +ASL LM KL+ +F
Sbjct: 198 NYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFS 241
Query: 143 SPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202
++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 203 Q-HMTGGLSKWSDTQADILHTYLG 225
Q + GG +KW D+ D LH Y G
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYFG 325
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
+ ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
Q + GG +KW D+ D LH Y
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 122/204 (59%), Gaps = 19/204 (9%)
Query: 24 LALVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCL 82
L+ V + LR+ SF C + +G + DMRFV+CA ICY+L++WSGMD + +
Sbjct: 139 LSRVNKEACLAGLRALQLEDGSF-CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197
Query: 83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
+I RS+SYD QG LESHGGST+C +ASL LM KL+ +F
Sbjct: 198 TYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFS 241
Query: 143 SPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202
++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 203 Q-HMTGGLSKWSDTQADILHTYLG 225
Q + GG +KW D+ D LH Y G
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYFG 325
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
+ ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
Q + GG +KW D+ D LH Y
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)
Query: 48 CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
C + +G + DMRFV+CA ICY+L++WSGMD + + +I RS+SYD QG LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221
Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
ST+C +ASL LM KL+ +F ++ +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265
Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
KPVDTCY+FW+GA+L +L + + E+ +L TQ + GG +KW D+ D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
+ ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
Q + GG +KW D+ D LH Y
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 113/180 (62%), Gaps = 18/180 (10%)
Query: 48 CTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106
C + +G + DMRFV+CA ICY+L++WSGMD + + +I RS+SYD QG LESHGG
Sbjct: 162 CAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGG 221
Query: 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPN 166
ST+C +ASL LM KL+ +F ++ +KRW I RQ++G+ GRPN
Sbjct: 222 STFCGIASLCLMGKLEE----------------VFSEKELNRIKRWCIMRQQNGYHGRPN 265
Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
KPVDTCY+FW+GA+L +L + + E+ +L TQ + GG +KW D+ D LH Y G
Sbjct: 266 KPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFG 325
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 235 KTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDT 294
+ ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 242 EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301
Query: 295 Q-HMTGGLSKWSDTQADILHTYL 316
Q + GG +KW D+ D LH Y
Sbjct: 302 QDRLVGGFAKWPDSHPDALHAYF 324
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 19/173 (10%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
GD D+R +F AC+I +ILDDWS +++ +++I LSY+ AFGQ P E+HGG TYCA+
Sbjct: 162 GDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAI 221
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTC 172
ASL+L+ +LD L P + E L WL+ +Q +GF GR NK DTC
Sbjct: 222 ASLSLLGRLDVLEPFK------------------EQLTFWLVKKQITGFCGRTNKDPDTC 263
Query: 173 YTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYL 224
Y FWIGASL +++ ID + + QH GG++K D++H+YL
Sbjct: 264 YAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEPGQLPDVMHSYL 316
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 239 ESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-M 297
E L WL+ +Q +GF GR NK DTCY FWIGASL +++ ID + + QH
Sbjct: 238 EQLTFWLVKKQITGFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEA 297
Query: 298 TGGLSKWSDTQADILHTYL 316
GG++K D++H+YL
Sbjct: 298 IGGVAKEPGQLPDVMHSYL 316
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 101/183 (55%), Gaps = 19/183 (10%)
Query: 54 DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALA 113
D DMR ++ A +I +LD +S D +++I Y+G F P E+H G+T+CALA
Sbjct: 146 DQDMRQLYMATTIASLLD-FSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALA 204
Query: 114 SLALMNKL---DTLRPTQASLYL-DLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNK 167
S +L+ K+ +L + S L D V P++E L RWL RQ S G GR NK
Sbjct: 205 SWSLILKMIPNSSLNTSNQSYNLMDCV-------PKVERLIRWLASRQLSSGGLNGRTNK 257
Query: 168 PVDTCYTFWIGASLSILNAATWIDE---ERLLLSVLDTQHMTGGLSKWSDTQADILHTYL 224
VDTCY +W+ +SL +L+A +ID E+ LL L QH GG SK D+LH+ L
Sbjct: 258 DVDTCYAYWVLSSLKLLDALPFIDGGELEKYLL--LHAQHALGGFSKTPGEFPDVLHSAL 315
Query: 225 GEF 227
G +
Sbjct: 316 GLY 318
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 237 QIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDE---ERLLLSV 291
++E L RWL RQ S G GR NK VDTCY +W+ +SL +L++ +ID E+ LL
Sbjct: 233 KVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGELEKYLL-- 290
Query: 292 LDTQHMTGGLSKWSDTQADILHTYLE--AMSHASRNKLKERNFQLPLDKKDI 341
L QH GG SK D+LH+ L AM++ + N + + K I
Sbjct: 291 LHAQHALGGFSKTPGEFPDVLHSALGLYAMAYQDDKSFPKVNADIHMTSKYI 342
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RFV+ A S IL + + ++F+ + ++DG FG P ESH + L
Sbjct: 132 GEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCL 191
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
+LA+ NKLD L Q+E + WL RQ G GRP+K D
Sbjct: 192 GALAIANKLDMLS-----------------DDQLEEIGWWLCERQLPEGGLNGRPSKLPD 234
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ +SL+I+ WI+ E+L +L Q GG+S + + D+ HT G
Sbjct: 235 VCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFG 290
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 23/230 (10%)
Query: 93 GAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRW 152
GAF P ++H +T A+ LA + LD L + + ++ Q+E
Sbjct: 73 GAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRG-----NQLED---- 123
Query: 153 LIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGG--LS 210
FQG VDT + + ++LSIL T + + VL + GG L
Sbjct: 124 ------GSFQGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLC 177
Query: 211 KWSDTQADILHTYLGEFFVRPRI---IKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCY 265
+++ A T LG + ++ Q+E + WL RQ G GRP+K D CY
Sbjct: 178 PNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCY 237
Query: 266 TFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHT 314
++W+ +SL+I+ WI+ E+L +L Q GG+S + + D+ HT
Sbjct: 238 SWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHT 287
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 43/230 (18%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D R +CA ++ +L+ + ++F+ +Y+G FG P E+HGG T+C++
Sbjct: 195 GEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSV 254
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVD 170
A+L+++N L + + SL RW+ +RQ + GF+GR NK VD
Sbjct: 255 AALSILNSLHKI--------------------DMNSLHRWITYRQSNDGGFEGRTNKLVD 294
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR 230
TCY++W GA I+ + + Q G K D Q + L + ++
Sbjct: 295 TCYSYWQGAVYIIIQS---------YFNYYKKQQQDDGDGKEGDQQEEGL--LFNQAKLQ 343
Query: 231 PRIIKTQIESLKRWLIFRQRSGFQGRPNKPVD---TCYTFWIGASLSILN 277
+I+ +S K++ SGF P++ D TCY G SLS N
Sbjct: 344 EYVIRFCQQSDKKY------SGFSDHPHRGKDYYHTCYGLS-GISLSQYN 386
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 86/224 (38%), Gaps = 69/224 (30%)
Query: 60 VFCACSICYIL---DDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
F A S Y++ + + +DR +F+ R + +GAF E +TYCA+A +
Sbjct: 151 TFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYDSRTTYCAIAVAS 210
Query: 117 LMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW 176
++N L A L +V FL E GF P YTF
Sbjct: 211 MLNIL------TAELERGVV-DFLLSCQTYEG-----------GFGAYPFNEAHGGYTFC 252
Query: 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKT 236
A+LSILN+ ID
Sbjct: 253 SVAALSILNSLHKID--------------------------------------------- 267
Query: 237 QIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNS 278
+ SL RW+ +RQ + GF+GR NK VDTCY++W GA I+ S
Sbjct: 268 -MNSLHRWITYRQSNDGGFEGRTNKLVDTCYSYWQGAVYIIIQS 310
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 128 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 187
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 247
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 248 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 304
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P+ P + L+R++ V
Sbjct: 305 QIK-PVSPVFCMPEEVLQRVNVQPELV 330
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK---------WSDTQADILHTYL 224
+W + ++ +++E +L+ + QH GG+S ++ + IL Y
Sbjct: 50 VYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYD 109
Query: 225 GEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDE 284
+ + ++SL+ ++ F G +DT ++F A+L++L I+
Sbjct: 110 SIHVINVDKVVAYVQSLQ-----KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV 164
Query: 285 ERLLLSVLDTQHMTGGLS 302
E+ + VL + GG
Sbjct: 165 EKAIEFVLSCMNFDGGFG 182
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 147 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 206
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 207 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 246
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 247 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 302
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 136 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 195
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 196 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 255
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 256 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 312
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P+ P + L+R++ V
Sbjct: 313 QIK-PVSPVFCMPEEVLQRVNVQPELV 338
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK---------WSDTQADILHTYL 224
+W + ++ ++ E +L+ + QH GG+S ++ + IL Y
Sbjct: 58 VYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYD 117
Query: 225 GEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDE 284
+ + ++SL+ ++ F G +DT ++F A+L++L I+
Sbjct: 118 SVHVINVDKVVAYVQSLQ-----KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV 172
Query: 285 ERLLLSVLDTQHMTGGLS 302
E+ + VL + GG
Sbjct: 173 EKAIEFVLSCMNFDGGFG 190
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFG 294
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 128 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 187
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 247
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 248 SLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 304
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P+ P + L R++ V
Sbjct: 305 QIK-PVSPVFCMPEEVLRRVNVQPELV 330
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF FCA + +L ++ + +EF+ +++DG FG P ESH G YC
Sbjct: 139 GEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCT 198
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
LA+ ++L + + L WL RQ G GRP K D
Sbjct: 199 GFLAITSQLHQVNS--------------------DLLGWWLCERQLPSGGLNGRPEKLPD 238
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ASL I+ WID E+L +L Q TGG + D HT G
Sbjct: 239 VCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFG 294
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 9/207 (4%)
Query: 156 RQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS--KWS 213
++ F G +DT ++F A+L++L I+ E+ + VL + GG S
Sbjct: 128 KEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGS 187
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 271
++ A ++ G + ++ + + L WL RQ G GRP K D CY++W+ A
Sbjct: 188 ESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLA 247
Query: 272 SLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLEAMSHASRNKLKER 330
SL I+ WID E+L +L Q TGG + D HT A + L E
Sbjct: 248 SLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGI---AGLSLLGEE 304
Query: 331 NFQLPLDKKDIAPLDELERIDTNMAFV 357
+ P++ P + L+R++ V
Sbjct: 305 QIK-PVNPVFCMPEEVLQRVNVQPELV 330
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 48 CTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGS 107
C G+ D RF C+ + C++L S ++ + F+ R + DG FG P ESH G
Sbjct: 140 CGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQ 199
Query: 108 TYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRP 165
YC + +LA+ +LD + + + WL FRQ G GRP
Sbjct: 200 IYCCVGALAIAGRLDEIDRDRTA--------------------EWLAFRQCDSGGLNGRP 239
Query: 166 NKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYL 224
K D CY++W+ ASL+IL +ID + + + Q TGG + AD HT
Sbjct: 240 EKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVF 299
Query: 225 G 225
G
Sbjct: 300 G 300
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 103/244 (42%), Gaps = 23/244 (9%)
Query: 76 MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDL 135
M + ++ + DG +G P +SH T CA+ +L + N ++ S Y+
Sbjct: 72 MSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKG 131
Query: 136 VKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERL 195
++ ++ F G + VDT +T A+ +L + ++ +
Sbjct: 132 LQ------------------QEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSA 173
Query: 196 LLSVLDTQHMTGGLSK--WSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RS 251
+ ++ + GG S++ + ++ +G + R+ + + WL FRQ
Sbjct: 174 VRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSG 233
Query: 252 GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQAD 310
G GRP K D CY++W+ ASL+IL +ID + + + Q TGG + AD
Sbjct: 234 GLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCAD 293
Query: 311 ILHT 314
HT
Sbjct: 294 PFHT 297
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RFV+ A S +L+ + FI + ++DG FG P ESH + +
Sbjct: 145 GEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCV 204
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---RSGFQGRPNKPV 169
+LA+MNKLD L + L WL RQ GF GRP K
Sbjct: 205 GALAIMNKLDLLDVENKKV----------------KLIDWLTERQVLPSGGFNGRPEKLP 248
Query: 170 DTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHT 222
D CY++W+ +SLSIL W+D + L +L Q + GG S Q D+ HT
Sbjct: 249 DVCYSWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHT 302
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 28/274 (10%)
Query: 57 MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYD---GAFGQGPCLESHGGSTYCALA 113
M ++ + +++ S + + +++I L +D GAFG P + H ST AL
Sbjct: 41 MNGLYWGVTALITMNELSALAQQDVIDYIM--LCWDDKTGAFGSFPKHDGHILSTLSALQ 98
Query: 114 SLALMNK-LDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
L + ++ L L S + E L +++ Q FQG VD
Sbjct: 99 VLKIYDQELTVLNDNNES----------SNGNKRERLIKFITGLQLPDGSFQGDKYGEVD 148
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGG--LSKWSDTQADILHTYLGEFF 228
T + + +SLS+LNA T + ++ + GG L S++ A + T +G
Sbjct: 149 TRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALA 208
Query: 229 VRPRIIKTQIESLK----RWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNSATW 281
+ ++ +E+ K WL RQ GF GRP K D CY++W+ +SLSIL W
Sbjct: 209 IMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKRKNW 268
Query: 282 IDEERLLLSVLDTQHM-TGGLSKWSDTQADILHT 314
+D + L +L Q + GG S Q D+ HT
Sbjct: 269 VDLKILENFILTCQDLENGGFSDRPGNQTDVYHT 302
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF + A +L ++ + +E+I ++DG FG P ESH G + +
Sbjct: 143 GEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCV 202
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
+L+++N+++ + I+ L WL RQ G GRP K D
Sbjct: 203 GALSILNEINKI--------------------DIDKLGWWLSERQLPNGGLNGRPEKSSD 242
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADILHTYLG 225
CY++W+ ++LS ++ WID ++L +L Q + TGG++ D+ HT+ G
Sbjct: 243 VCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGIADKPGDIPDVFHTFFG 298
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 23/246 (9%)
Query: 76 MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDL 135
+D+ ++++ +G FG + H ST A+ L + LD +
Sbjct: 70 LDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKID---------- 119
Query: 136 VKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERL 195
+ S + Y +++ R+ F G VDT +++ LS+L + I+ E+
Sbjct: 120 INSVVDYVVKLQ--------REDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKA 171
Query: 196 LLSVLDTQHMTGGLSK--WSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RS 251
+ +L Q+ GG +++ A + T +G + I K I+ L WL RQ
Sbjct: 172 VEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLPNG 231
Query: 252 GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQAD 310
G GRP K D CY++W+ ++LS ++ WID ++L +L Q + TGG++ D
Sbjct: 232 GLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGIADKPGDIPD 291
Query: 311 ILHTYL 316
+ HT+
Sbjct: 292 VFHTFF 297
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 36 LRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAF 95
L S P FK L G+ D R ++CA SI +L+ + L ++ +Y+G F
Sbjct: 189 LISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEGGF 248
Query: 96 GQGPCL-ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLI 154
G P + E+HGG T+CA ASLA++ +D + +E L W
Sbjct: 249 GSCPHVDEAHGGYTFCATASLAILRSMDQI--------------------NVEKLLEWSS 288
Query: 155 FRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNA 186
RQ GF GR NK VD CY+FW+G S +IL A
Sbjct: 289 ARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEA 323
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 41/193 (21%)
Query: 103 SHGGSTYCALASLALMNKLDTL--RPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSG 160
SH STY A+ +L+L + +D R + +Y +WLI +
Sbjct: 155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIY------------------QWLISLKE-- 194
Query: 161 FQGRPNKPVDTCY------TFWIGASLSI---LNAATWIDEERLLLSVLDTQHMTGGLSK 211
PN TC T I +LSI LN T E +L + + Q+ GG
Sbjct: 195 ----PNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGS 250
Query: 212 WSDT-QADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRPNKPVDTCY 265
+A +T+ + + + +E L W RQ GF GR NK VD CY
Sbjct: 251 CPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCY 310
Query: 266 TFWIGASLSILNS 278
+FW+G S +IL +
Sbjct: 311 SFWVGGSAAILEA 323
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 60/294 (20%)
Query: 23 VLALVYRLQISTSLRSFTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDDWSGMDRARC 81
L+ + R ++S LR F+ + D G+ D+R + A S+ IL+
Sbjct: 176 ALSSINREKMSCFLRRMKDTSGGFR--MHDMGEMDVRACYTAISVASILNIMDDELTQGL 233
Query: 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141
++I +Y+G G P E+HGG TYC LA++ L+N++D L
Sbjct: 234 GDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRL----------------- 276
Query: 142 YSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSV 199
++SL W + RQ GFQGR NK VD CYTFW A +L ++ V
Sbjct: 277 ---NLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDH----DV 329
Query: 200 LDTQHMTGGLSKWSDTQAD-------------------------ILHTYLGEFFVRPRII 234
+ H++ G ++ + I HT + R +
Sbjct: 330 HGSSHISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNGHRIHHT--STYINRRMQL 387
Query: 235 KTQIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEE 285
L+R+++ + GF+ +P KP D +T + + LS+ A W+ +E
Sbjct: 388 VFDSLGLQRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSVAQHA-WLKDE 440
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF++ + IL +++ ++++ + ++DG FG P ESHG + +
Sbjct: 125 GEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCV 184
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
A+L ++NKLD + E L W+ RQ G GRP K D
Sbjct: 185 AALKILNKLDLIDE--------------------ELLGWWISERQVKGGGLNGRPEKLPD 224
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHT 222
+CY +W + L+I+ WID +L+ +L TQ +GG + + D+ HT
Sbjct: 225 SCYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFADRKEDATDVYHT 277
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 129/296 (43%), Gaps = 27/296 (9%)
Query: 60 VFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMN 119
++ +C ++L +D+ R + F+ L+ G F P + H +T A+ LA+++
Sbjct: 36 IYWSCMSFWLLKKKDQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLD 95
Query: 120 KLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGA 179
L + + + Y+ +++ + +G +D + +
Sbjct: 96 SLHVVDKDKVASYIIGLQN------------------EDGSMKGDRWGEIDARFLYSGIN 137
Query: 180 SLSILNAATWIDEERLLLSVLDTQHMTGG--LSKWSDTQADILHTYLGEFFVRPRIIKTQ 237
L+IL ++++ + ++ + GG L +++ ++ T + + ++
Sbjct: 138 CLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLDLID 197
Query: 238 IESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ 295
E L W+ RQ G GRP K D+CY +W + L+I+ WID +L+ +L TQ
Sbjct: 198 EELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQ 257
Query: 296 HM-TGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQLPLDKKDIAPLDELERI 350
+GG + + D+ HT S A + L+ N + P+D + PL+ +++
Sbjct: 258 DADSGGFADRKEDATDVYHT---CFSLAGLSLLQFPNIE-PVDPRFCLPLEVTQKM 309
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
LA + R ++ +R P F+ +G+ D+R + A S+ +L+ +
Sbjct: 114 LASINRNKLYGFMRRMKQPNGGFRMH-DEGEIDVRACYTAISVASVLNILDDELIKNVGD 172
Query: 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
FI +Y+G P E+HGG T+C LA++ L+ +++ L DL +
Sbjct: 173 FILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRL---------DLPR------ 217
Query: 144 PQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERL 195
L W++FRQ GFQGR NK VD CY+FW G ++++L I +E++
Sbjct: 218 -----LLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQM 266
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 31/216 (14%)
Query: 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141
++F+ R +G + GP H +TY A+ +L + +L AS+ + + F+
Sbjct: 72 VDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLGGEKSL----ASINRNKLYGFMR 127
Query: 142 YSPQIESLKRWLIFRQRSGFQGRPNKPVDT--CYTFWIGASLSILNAATWIDEERLLLSV 199
Q GF+ +D CYT ++S+ + +D+E L+ +V
Sbjct: 128 RMKQ-----------PNGGFRMHDEGEIDVRACYT-----AISVASVLNILDDE-LIKNV 170
Query: 200 ----LDTQHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ--RS 251
L Q GGL+ ++A +T+ G + + + + L W++FRQ
Sbjct: 171 GDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKEC 230
Query: 252 GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERL 287
GFQGR NK VD CY+FW G ++++L I +E++
Sbjct: 231 GFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQM 266
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 41/216 (18%)
Query: 25 ALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRA---RC 81
+L+ R ++ L S P SF+ +G+ D R V+ A + ++ MD
Sbjct: 125 SLIERDRLYDWLFSLKNPDGSFRVN-NEGESDARSVYAAVCVSSLVG--ISMDDPLFEGT 181
Query: 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141
L+++ + +Y+G P E+HGG T+CALA++AL+ LD L +
Sbjct: 182 LQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIK------------- 228
Query: 142 YSPQIESLKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNAAT---------- 188
L WL+ RQ GF GR NK VD CY++W+GAS I+ +
Sbjct: 229 -------LSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLPN 281
Query: 189 -WIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHT 222
+ + E+LL +L Q +GGL + D HT
Sbjct: 282 LFYNPEKLLGYILQCCQSTSGGLRDKPPKRPDQYHT 317
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 241 LKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNSAT-----------WIDEER 286
L WL+ RQ GF GR NK VD CY++W+GAS I+ S + + E+
Sbjct: 229 LSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGASHVIVASGYGSASHKSLPNLFYNPEK 288
Query: 287 LLLSVLD-TQHMTGGLSKWSDTQADILHT 314
LL +L Q +GGL + D HT
Sbjct: 289 LLGYILQCCQSTSGGLRDKPPKRPDQYHT 317
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 VINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 40/215 (18%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADG-DCDMRFVFCACSICYILDDWSGMDRARCLEF 84
++ R ++ L S P SF + DG + D+R +CA S+ + + + E+
Sbjct: 171 VINREKLLQYLYSLKQPDGSF--LMHDGGEVDVRSAYCAASVASLTNIITPDLFEGTAEW 228
Query: 85 IFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSP 144
I R +++G G P +E+HGG T+C LA+L ++ K +L
Sbjct: 229 IARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLN------------------- 269
Query: 145 QIESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA------------TW 189
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A W
Sbjct: 270 -LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRW 328
Query: 190 IDEERLLLS--VLDTQHMTGGLSKWSDTQADILHT 222
+ ++ L ++ Q TGGL D HT
Sbjct: 329 MFHQQALQEYILMCCQCPTGGLLDKPGKSRDFYHT 363
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + + ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA------------TWIDEERLLLS--VLDTQHMTGGLSK 303
NK VD CY+FW L +L+ A W+ ++ L ++ Q TGGL
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSRWMFHQQALQEYILMCCQCPTGGLLD 352
Query: 304 WSDTQADILHT 314
D HT
Sbjct: 353 KPGKSRDFYHT 363
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 24/165 (14%)
Query: 26 LVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85
++ R ++ L S P SF + G+ D+R +CA S+ + + + E+I
Sbjct: 171 IINREKLLQYLYSLKQPDGSFLMHVG-GEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229
Query: 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ 145
R +++G G P +E+HGG T+C LA+L ++ + +L
Sbjct: 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLN-------------------- 269
Query: 146 IESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 270 LKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRA 314
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 203 QHMTGGLSKWSDTQADILHTYLG--EFFVRPRIIKTQIESLKRWLIFRQ---RSGFQGRP 257
Q+ GG+ +A +T+ G + R ++SL +W+ RQ GFQGR
Sbjct: 233 QNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRC 292
Query: 258 NKPVDTCYTFWIGASLSILNSA 279
NK VD CY+FW L +L+ A
Sbjct: 293 NKLVDGCYSFWQAGLLPLLHRA 314
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 54/203 (26%)
Query: 56 DMRFVFCACSICYI--------LDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGS 107
D+RF + A +I YI D++ +D + L +I Y+GAFG E H G
Sbjct: 164 DLRFCYIAVAILYICGCRSKEDFDEY--IDTEKLLGYIMSQQCYNGAFGAHN--EPHSGY 219
Query: 108 TYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS-------- 159
T CAL++LAL++ L+ L D K E WL+ RQ S
Sbjct: 220 TSCALSTLALLSSLEKLS--------DKFK---------EDTITWLLHRQVSSHGCMKFE 262
Query: 160 -------------GFQGRPNKPVDTCYTFWIGASLSILNA--ATWIDEERLLLSVLD--T 202
GFQGR NK DTCY FW SL +L E + +LD
Sbjct: 263 SELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLLTKDWKMLCQTELVTNYLLDRTQ 322
Query: 203 QHMTGGLSKWSDTQADILHTYLG 225
+ +TGG SK + AD+ H+ LG
Sbjct: 323 KTLTGGFSKNDEEDADLYHSCLG 345
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 252 GFQGRPNKPVDTCYTFWIGASLSILNSATW---IDEERLLLSVLD--TQHMTGGLSKWSD 306
GFQGR NK DTCY FW SL +L + W E + +LD + +TGG SK +
Sbjct: 276 GFQGRENKFADTCYAFWCLNSLHLL-TKDWKMLCQTELVTNYLLDRTQKTLTGGFSKNDE 334
Query: 307 TQADILHTYL 316
AD+ H+ L
Sbjct: 335 EDADLYHSCL 344
>sp|A7TNI7|CHO21_VANPO Phosphatidylethanolamine N-methyltransferase 1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=CHO2-1 PE=3
SV=1
Length = 838
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 21/165 (12%)
Query: 1 MSTAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFV 60
++ +E V T + PP +V L T +SF C + +
Sbjct: 6 ITEKKEIVARTRSSGITFNPPVTHDMVRSLFDPTIKKSFLECCITLT------------I 53
Query: 61 FCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK 120
+CY L +W G+ +A+ + F+ + + + A+ G + H S Y +L A NK
Sbjct: 54 LANFVLCYYLINWFGLSQAKLI-FLIQYVYWRLAYNLGIGIILHYQSHYESLTKYANQNK 112
Query: 121 LDTLRPTQ----ASLYLDLVKSFLFYSPQIES----LKRWLIFRQ 157
L + AS + +KS + + S L WL+FRQ
Sbjct: 113 LFKKESAKTNWIASFFQFEIKSKMPNDYNLHSYPDELNCWLLFRQ 157
>sp|O77810|CP1A2_CALJA Cytochrome P450 1A2 OS=Callithrix jacchus GN=CYP1A2 PE=2 SV=3
Length = 516
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 208 GLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTF 267
L+K S D+L ++G P ++ + ++++++ L+ RQ F+GRP+ T T
Sbjct: 64 ALTKMSQRYGDVLQIHIGS---TPVVVLSGLDTIRQALV-RQGDDFKGRPDLYSFTLITD 119
Query: 268 WIGASLSILNSATWIDEERLLLSVLDT 294
S S + W RL + L+T
Sbjct: 120 GQSMSFSPDSGPVWAARRRLAQNALNT 146
>sp|C5DI25|DLT1_LACTC Defect at low temperature protein 1 OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=DLT1
PE=3 SV=1
Length = 355
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALA-SLALMNKLDTLRPTQASLYLDLVKSF 139
++ I L Y G F L+S G T+ +A S++ NKL + ++A+ Y+ L ++
Sbjct: 146 SIKIITSRLKYQGVFSNLVKLDSDTGDTFATIARSMSAQNKLSS---SEAAEYIKLYEAI 202
Query: 140 LFYSPQIESLKRWLIFRQRSGF 161
F +I + +++L F RS F
Sbjct: 203 RFSGKEI-TKEQFLQFMDRSIF 223
>sp|P05177|CP1A2_HUMAN Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3
Length = 515
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 208 GLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTF 267
LS+ S D+L +G P ++ ++++++++ L+ RQ F+GRP+ T T
Sbjct: 64 ALSRMSQRYGDVLQIRIGS---TPVLVLSRLDTIRQALV-RQGDDFKGRPDLYTSTLITD 119
Query: 268 WIGASLSILNSATWIDEERLLLSVLDT 294
+ S + W RL + L+T
Sbjct: 120 GQSLTFSTDSGPVWAARRRLAQNALNT 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,520,024
Number of Sequences: 539616
Number of extensions: 5265694
Number of successful extensions: 12642
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12473
Number of HSP's gapped (non-prelim): 86
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)