Query psy6404
Match_columns 361
No_of_seqs 208 out of 1634
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:02:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03201 RAB geranylgeranyl tr 100.0 3.1E-69 6.7E-74 517.3 25.7 298 24-342 5-311 (316)
2 KOG0366|consensus 100.0 2.4E-68 5.3E-73 476.4 21.2 299 22-341 13-320 (329)
3 PLN02710 farnesyltranstransfer 100.0 3.3E-67 7.1E-72 515.0 26.3 282 24-325 41-392 (439)
4 KOG0367|consensus 100.0 1.2E-65 2.6E-70 466.5 20.5 301 25-347 9-344 (347)
5 KOG0365|consensus 100.0 3E-65 6.5E-70 471.8 20.8 282 29-330 74-377 (423)
6 COG5029 CAL1 Prenyltransferase 100.0 3.3E-65 7.2E-70 468.2 20.3 305 16-339 16-331 (342)
7 cd02893 FTase Protein farnesyl 100.0 7.2E-63 1.6E-67 470.3 24.9 274 29-322 1-297 (299)
8 cd02895 GGTase-I Geranylgerany 100.0 4.2E-60 9.1E-65 452.7 24.0 272 29-322 1-305 (307)
9 cd02894 GGTase-II Geranylgeran 100.0 2.3E-59 5E-64 444.7 24.2 274 28-322 2-285 (287)
10 cd02890 PTase Protein prenyltr 100.0 1.9E-55 4.1E-60 417.7 23.8 274 29-322 1-284 (286)
11 cd02895 GGTase-I Geranylgerany 100.0 3.7E-49 7.9E-54 377.3 23.3 255 3-276 24-307 (307)
12 cd02894 GGTase-II Geranylgeran 100.0 3.1E-48 6.7E-53 368.4 22.8 250 4-276 28-287 (287)
13 PLN03201 RAB geranylgeranyl tr 100.0 1.8E-46 3.8E-51 359.9 23.8 251 6-279 37-294 (316)
14 cd02890 PTase Protein prenyltr 100.0 1.3E-45 2.7E-50 350.4 23.6 252 3-276 24-286 (286)
15 KOG0367|consensus 100.0 1.4E-45 3.1E-50 335.5 16.8 210 4-230 103-317 (347)
16 PLN02710 farnesyltranstransfer 100.0 1.1E-43 2.4E-48 348.9 23.6 254 4-279 70-392 (439)
17 cd02893 FTase Protein farnesyl 100.0 1.5E-43 3.3E-48 337.5 23.3 250 4-275 25-298 (299)
18 COG5029 CAL1 Prenyltransferase 100.0 6.3E-42 1.4E-46 314.7 17.5 207 3-230 101-312 (342)
19 KOG0366|consensus 100.0 4.8E-40 1E-44 294.6 16.5 205 4-231 93-300 (329)
20 KOG0365|consensus 100.0 2.1E-37 4.5E-42 287.0 14.8 205 4-230 147-367 (423)
21 cd00688 ISOPREN_C2_like This g 100.0 1E-28 2.2E-33 231.1 24.9 272 30-322 2-298 (300)
22 cd00688 ISOPREN_C2_like This g 99.9 6.3E-25 1.4E-29 205.5 21.7 250 4-275 25-299 (300)
23 cd02889 SQCY Squalene cyclase 99.8 1.2E-19 2.6E-24 176.5 22.1 258 30-305 2-320 (348)
24 TIGR03463 osq_cycl 2,3-oxidosq 99.8 1.4E-19 3.1E-24 188.3 21.6 235 4-253 304-602 (634)
25 TIGR01507 hopene_cyclase squal 99.8 1.5E-18 3.1E-23 180.6 24.0 226 4-250 314-591 (635)
26 cd02892 SQCY_1 Squalene cyclas 99.8 7.1E-19 1.5E-23 184.0 21.2 236 3-253 305-602 (634)
27 cd02889 SQCY Squalene cyclase 99.8 4.5E-18 9.8E-23 165.4 20.3 237 4-255 23-318 (348)
28 PLN02993 lupeol synthase 99.8 6.1E-18 1.3E-22 176.7 21.6 233 3-250 415-715 (763)
29 PLN03012 Camelliol C synthase 99.8 5.9E-18 1.3E-22 176.4 20.8 253 3-273 415-749 (759)
30 PF13249 Prenyltrans_2: Prenyl 99.8 2.3E-18 5.1E-23 140.3 9.3 107 82-211 1-113 (113)
31 TIGR01787 squalene_cyclas squa 99.8 6.1E-17 1.3E-21 168.4 21.4 233 3-255 293-588 (621)
32 COG1689 Uncharacterized protei 99.7 8.6E-17 1.9E-21 141.6 15.8 253 25-323 4-270 (274)
33 cd02892 SQCY_1 Squalene cyclas 99.7 2.2E-15 4.9E-20 157.7 24.0 281 7-305 260-606 (634)
34 TIGR01507 hopene_cyclase squal 99.7 2.7E-14 5.8E-19 148.9 25.5 276 8-304 269-599 (635)
35 TIGR03463 osq_cycl 2,3-oxidosq 99.6 2.1E-14 4.5E-19 149.8 23.3 281 9-305 259-606 (634)
36 PF13249 Prenyltrans_2: Prenyl 99.6 1.1E-15 2.5E-20 124.4 8.5 107 33-162 1-112 (113)
37 COG1689 Uncharacterized protei 99.6 9.3E-15 2E-19 128.9 13.7 193 5-230 34-269 (274)
38 TIGR01787 squalene_cyclas squa 99.6 1.1E-13 2.5E-18 144.1 24.1 272 12-305 254-590 (621)
39 PLN03012 Camelliol C synthase 99.6 2.4E-14 5.2E-19 149.6 16.8 190 4-212 483-723 (759)
40 PLN02993 lupeol synthase 99.6 7E-14 1.5E-18 146.5 17.7 189 4-211 483-722 (763)
41 cd02896 complement_C3_C4_C5 Pr 99.4 8.6E-12 1.9E-16 119.2 17.3 198 30-255 55-283 (297)
42 cd02897 A2M_2 Proteins similar 99.4 8.4E-11 1.8E-15 112.0 20.2 202 24-255 39-278 (292)
43 cd02897 A2M_2 Proteins similar 99.2 1.5E-09 3.2E-14 103.4 20.6 224 62-322 28-290 (292)
44 KOG0497|consensus 99.2 2.5E-10 5.3E-15 116.0 15.7 226 4-250 415-714 (760)
45 cd02896 complement_C3_C4_C5 Pr 99.2 1.5E-09 3.2E-14 103.8 17.1 207 78-321 54-294 (297)
46 PF00432 Prenyltrans: Prenyltr 99.2 4.8E-11 1E-15 81.0 4.7 44 76-119 1-44 (44)
47 PF00432 Prenyltrans: Prenyltr 99.1 1.2E-10 2.5E-15 79.1 3.6 41 190-230 1-41 (44)
48 PF13243 Prenyltrans_1: Prenyl 99.0 6.2E-10 1.3E-14 90.1 4.2 100 147-250 2-107 (109)
49 PF13243 Prenyltrans_1: Prenyl 98.9 2.1E-09 4.6E-14 86.9 5.5 104 30-157 2-106 (109)
50 cd02891 A2M_like Proteins simi 98.8 2.5E-07 5.3E-12 87.3 17.9 189 29-247 51-258 (282)
51 PF07678 A2M_comp: A-macroglob 98.7 2E-07 4.2E-12 86.8 13.3 197 33-255 3-230 (246)
52 cd02891 A2M_like Proteins simi 98.7 1.5E-06 3.3E-11 81.8 19.0 112 77-205 50-173 (282)
53 KOG0497|consensus 98.3 1.1E-05 2.3E-10 82.8 12.6 169 25-212 507-722 (760)
54 PF07678 A2M_comp: A-macroglob 98.2 3.3E-05 7.2E-10 71.9 13.3 207 81-321 2-241 (246)
55 COG1657 SqhC Squalene cyclase 97.8 4.8E-05 1E-09 76.9 6.7 190 39-250 245-473 (517)
56 COG1657 SqhC Squalene cyclase 97.5 0.00034 7.4E-09 70.8 8.2 187 5-214 263-483 (517)
57 PLN02592 ent-copalyl diphospha 96.5 0.13 2.7E-06 55.5 16.9 107 199-319 258-368 (800)
58 TIGR02474 pec_lyase pectate ly 96.3 0.072 1.6E-06 50.5 12.1 90 2-95 39-156 (290)
59 PLN02279 ent-kaur-16-ene synth 96.1 0.21 4.6E-06 53.9 16.3 102 199-318 218-322 (784)
60 TIGR02474 pec_lyase pectate ly 95.9 0.029 6.3E-07 53.2 7.9 101 59-166 45-161 (290)
61 PF05817 Ribophorin_II: Oligos 91.7 12 0.00027 39.7 17.6 94 3-120 46-139 (636)
62 KOG1366|consensus 90.8 1.5 3.2E-05 50.5 10.3 89 7-97 946-1045(1436)
63 PLN02592 ent-copalyl diphospha 80.0 2.1 4.6E-05 46.4 4.4 56 191-246 116-174 (800)
64 PLN02279 ent-kaur-16-ene synth 76.4 2.8 6.1E-05 45.4 4.0 71 174-245 58-133 (784)
65 PF01122 Cobalamin_bind: Eukar 75.8 5.1 0.00011 38.8 5.2 94 78-210 217-311 (326)
66 PF09492 Pec_lyase: Pectic aci 72.9 7.2 0.00016 37.1 5.4 84 2-91 34-147 (289)
67 KOG1366|consensus 63.9 18 0.00039 41.9 7.1 91 56-163 944-1045(1436)
68 PF09492 Pec_lyase: Pectic aci 59.2 8.9 0.00019 36.5 3.1 40 59-98 40-84 (289)
69 PF05817 Ribophorin_II: Oligos 54.5 2.8E+02 0.0061 29.6 13.5 140 3-186 121-269 (636)
70 PF07944 DUF1680: Putative gly 47.0 2.5E+02 0.0055 29.0 11.8 24 76-99 83-106 (520)
71 PF10022 DUF2264: Uncharacteri 43.9 2.5E+02 0.0054 27.7 10.6 72 22-100 127-199 (361)
72 PF01122 Cobalamin_bind: Eukar 38.7 74 0.0016 30.9 5.8 89 192-302 217-311 (326)
No 1
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=3.1e-69 Score=517.27 Aligned_cols=298 Identities=22% Similarity=0.350 Sum_probs=271.8
Q ss_pred CChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCcc
Q psy6404 24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLES 103 (361)
Q Consensus 24 l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~s 103 (361)
...+.++++++||+++|+.+++|.... ...++++.+||++.+|.+|+.....+++++++||++||++||||++.|++++
T Consensus 5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~-~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~ 83 (316)
T PLN03201 5 MGELVVDKHVRYIKSLEKKKDSFESVV-MEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDP 83 (316)
T ss_pred hhhccHHHHHHHHHHhCCCCCCccccc-cccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcc
Confidence 455679999999999999889997642 2356888899999999999987788999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHH
Q psy6404 104 HGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASL 181 (361)
Q Consensus 104 h~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L 181 (361)
|+.+||+|+++|.+++..+ ..+++++++||.++| ||||.+++++++|+|+||||++++
T Consensus 84 h~~~Ty~al~~L~ll~~~~--------------------~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l 143 (316)
T PLN03201 84 HILYTLSAVQILALFDRLD--------------------LLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCL 143 (316)
T ss_pred cHHHHHHHHHHHHHhhhhh--------------------hhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHH
Confidence 9999999999999996532 347889999999988 999999999999999999999999
Q ss_pred HHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCC
Q psy6404 182 SILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRP 257 (361)
Q Consensus 182 ~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~ 257 (361)
.+++..+.++++++++||++||++||||+..|+.|+|+++||||+++|.. .++..+.+++++||.+||. |||+|||
T Consensus 144 ~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp 223 (316)
T PLN03201 144 SLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRP 223 (316)
T ss_pred HHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCC
Confidence 99998777899999999999999999999999999999999999999863 3445678899999999997 9999999
Q ss_pred CCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCChHHHHHHH--HHhcccCCCccccccC
Q psy6404 258 NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLEA--MSHASRNKLKERNFQL 334 (361)
Q Consensus 258 nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~~~~~~ 334 (361)
||++|+|||||++++|.+|+..+|+|.+++++||++||++ .|||+|+|++.||+|||||++ +||.+++.+.|++|.+
T Consensus 224 ~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~~l~~~~p~~ 303 (316)
T PLN03201 224 EKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAY 303 (316)
T ss_pred CCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999975 899999999999999999975 6999999999999999
Q ss_pred CCCccccc
Q psy6404 335 PLDKKDIA 342 (361)
Q Consensus 335 ~~~~~~~~ 342 (361)
+++++..+
T Consensus 304 ~~~~~~~~ 311 (316)
T PLN03201 304 ALPVDVVN 311 (316)
T ss_pred cCCHHHHH
Confidence 99876654
No 2
>KOG0366|consensus
Probab=100.00 E-value=2.4e-68 Score=476.43 Aligned_cols=299 Identities=23% Similarity=0.341 Sum_probs=272.9
Q ss_pred CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404 22 GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCL 101 (361)
Q Consensus 22 ~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~ 101 (361)
+....+.++++++|+.+..+...+|..... ..-+++.+||++.++.+|+..+..++++++.|+++||+.+|||++.|++
T Consensus 13 d~~~~Ll~dkH~~yI~~~~~kk~~fey~l~-EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Gh 91 (329)
T KOG0366|consen 13 DAPDELLKDKHARYIESYGKKKDSFEYCLT-EHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGH 91 (329)
T ss_pred CcHHHHHHHHHHHHHHHhccccchHHHHHH-hHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCC
Confidence 334556799999999997666566665432 2368889999999999999988889999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404 102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 179 (361)
Q Consensus 102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~ 179 (361)
.+|+.+|++|+++|++++..+. .|++++.+|+...| ||+|.|...+|.|+|++|||++
T Consensus 92 d~hll~TlsAvQiL~~ydsi~~--------------------~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~ 151 (329)
T KOG0366|consen 92 DPHLLYTLSAVQILALYDSINV--------------------LDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVA 151 (329)
T ss_pred ChHHHHHHHHHHHHHHHccccc--------------------ccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHH
Confidence 9999999999999999987543 37888999999766 9999999999999999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
+|++|+.++.++++++++|+++|.|.|||||..|+.|||.+..||++.+|.. +++..+.+.+-.||++||. ||.||
T Consensus 152 ~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNG 231 (329)
T KOG0366|consen 152 CLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNG 231 (329)
T ss_pred HHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999864 6778889999999999998 99999
Q ss_pred CCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHHHHH--HHhcccCCCccccc
Q psy6404 256 RPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLEA--MSHASRNKLKERNF 332 (361)
Q Consensus 256 R~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~~~~ 332 (361)
||.|++|+|||||++++|.|++..+|||.+++++||+.||+ +.|||+|+|+..+|+|||+|++ +||.+.++++||+|
T Consensus 232 RpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP 311 (329)
T KOG0366|consen 232 RPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDP 311 (329)
T ss_pred CcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCC
Confidence 99999999999999999999999999999999999999998 6999999999999999999964 79999999999999
Q ss_pred cCCCCcccc
Q psy6404 333 QLPLDKKDI 341 (361)
Q Consensus 333 ~~~~~~~~~ 341 (361)
..++.+...
T Consensus 312 ~fcmp~~v~ 320 (329)
T KOG0366|consen 312 IFCMPKEVL 320 (329)
T ss_pred cccCcHHHH
Confidence 988866443
No 3
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=3.3e-67 Score=515.03 Aligned_cols=282 Identities=23% Similarity=0.292 Sum_probs=249.0
Q ss_pred CChhhHHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404 24 LALVYRLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCL 101 (361)
Q Consensus 24 l~~~~~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~ 101 (361)
...+.|+++++|++++-.+ +..|... ..++++.+||+|.+|.+|+. ++.++++++++||.+||++||||+++|++
T Consensus 41 ~~~l~~~~H~~yl~~~l~~lp~~~~~l---Da~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~ 117 (439)
T PLN02710 41 MLELWREKHLEYLTRGLRQLGPSFSVL---DANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQ 117 (439)
T ss_pred cccccHHHHHHHHHHHhhcCChhhhhh---hhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 3568899999999986433 3344443 24799999999999999996 56778999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404 102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 179 (361)
Q Consensus 102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~ 179 (361)
++|+++||+||++|.+++..+. ++..+++++++||.++| ||||.+.+++|.|+|+||||++
T Consensus 118 ~~hl~~TY~Av~~L~iLg~~~~-----------------l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAla 180 (439)
T PLN02710 118 LPHLATTYAAVNTLVTIGGERA-----------------LSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAIS 180 (439)
T ss_pred CccHHHHHHHHHHHHHcCCchh-----------------hcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHH
Confidence 9999999999999999997322 23458899999999988 9999999999999999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
++.+|+.++.++.+++++||++||++||||+..|+.|+|+++|||||++|.. .++..+++++++||.+||. |||+|
T Consensus 181 il~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~G 260 (439)
T PLN02710 181 VASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQG 260 (439)
T ss_pred HHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCC
Confidence 9999998888899999999999999999999999999999999999999864 4556789999999999996 99999
Q ss_pred CCCCCCcccccchHHHHHHHhhccCc------------------------------------------------------
Q psy6404 256 RPNKPVDTCYTFWIGASLSILNSATW------------------------------------------------------ 281 (361)
Q Consensus 256 R~nK~~D~CYsfW~~a~L~~L~~~~~------------------------------------------------------ 281 (361)
||||++|+|||||++++|.||+..++
T Consensus 261 R~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (439)
T PLN02710 261 RTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQ 340 (439)
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999986533
Q ss_pred -----ccHHHHHHHHHhc-cCCCCCcCCCCCCCCChHHHHHHH--HHhcccC
Q psy6404 282 -----IDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTYLEA--MSHASRN 325 (361)
Q Consensus 282 -----~~~~~~~~~il~~-Q~~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~ 325 (361)
+|.+++++||+.| |.+.|||+|+|++.||+|||||++ +|++++.
T Consensus 341 ~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~ 392 (439)
T PLN02710 341 QMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYS 392 (439)
T ss_pred ccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhc
Confidence 5667899999854 567999999999999999999965 6777664
No 4
>KOG0367|consensus
Probab=100.00 E-value=1.2e-65 Score=466.54 Aligned_cols=301 Identities=27% Similarity=0.386 Sum_probs=264.4
Q ss_pred ChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC---C-----CC
Q psy6404 25 ALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYD---G-----AF 95 (361)
Q Consensus 25 ~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~d---G-----GF 95 (361)
.++.+++++.|+.++ |.-+-.|.+. ..+++..+++++++|.+|+.....+++..++||++.|-.. + ||
T Consensus 9 ~~~~~~kH~~ff~RhL~llP~~y~sh---d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF 85 (347)
T KOG0367|consen 9 SRFERKKHIKFFERHLQLLPSPYQSH---DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGF 85 (347)
T ss_pred chhhHHHHHHHHHHHHHhCCCccccc---ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeee
Confidence 456799999999985 6555555543 2478889999999999999888889999999999998321 2 46
Q ss_pred CCC----------CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404 96 GQG----------PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG 163 (361)
Q Consensus 96 ~~~----------p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~ 163 (361)
.+. +..++|+++||+++++|.++|+. +++.|++.+++++..+| ||+|..
T Consensus 86 ~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGdd-------------------LsrlDrksil~~v~~~Q~~dGsF~~ 146 (347)
T KOG0367|consen 86 RGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDD-------------------LSRLDRKSILRFVSACQRPDGSFVS 146 (347)
T ss_pred eeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcch-------------------HhhhhHHHHHHHHHHhcCCCCceee
Confidence 443 23478999999999999999972 24568999999999888 999987
Q ss_pred C-CCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--c------cc
Q psy6404 164 R-PNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--R------II 234 (361)
Q Consensus 164 ~-~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~------~~ 234 (361)
. .+.++|+|++|||++++.||+.++.+|.++++.||++||+|||||+..|+.|||+|+||||||+|.. . ..
T Consensus 147 ~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~ 226 (347)
T KOG0367|consen 147 INVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSN 226 (347)
T ss_pred cCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhcc
Confidence 5 4678999999999999999999999999999999999999999999999999999999999999852 2 23
Q ss_pred hhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCCh
Q psy6404 235 KTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADI 311 (361)
Q Consensus 235 ~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~ 311 (361)
+.+++++++||++||. ||||||+||++||||+||++++|.+|++..++|.+.+++||++||++ .|||+|+|+..||+
T Consensus 227 ~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~ 306 (347)
T KOG0367|consen 227 TSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDL 306 (347)
T ss_pred ccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchH
Confidence 4568999999999998 79999999999999999999999999999999999999999999987 79999999999999
Q ss_pred HHHHHHH--HHhcccCCCccccccCCCCcccccchhhH
Q psy6404 312 LHTYLEA--MSHASRNKLKERNFQLPLDKKDIAPLDEL 347 (361)
Q Consensus 312 ~hT~~a~--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (361)
|||||++ +||+.++.+.|++|.++++.+.+++...+
T Consensus 307 ~HsylG~~alal~ee~~~~~v~p~l~~s~~~~~r~~~l 344 (347)
T KOG0367|consen 307 LHSYLGLAALALLEEKGLSPVCPSLNMSMRASERCCDL 344 (347)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCccccccHHHHHHHHHH
Confidence 9999974 69999999999999999999988876654
No 5
>KOG0365|consensus
Probab=100.00 E-value=3e-65 Score=471.84 Aligned_cols=282 Identities=26% Similarity=0.337 Sum_probs=250.2
Q ss_pred HHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch
Q psy6404 29 RLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106 (361)
Q Consensus 29 ~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~ 106 (361)
|+++..||.+. .+-+-.|..- ..++.|++||.+.++.+|+. ++..-.+++|+|+..||.|.||||++|++.+|++
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~~L---DASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA 150 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYTCL---DASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLA 150 (423)
T ss_pred HHHHHHHHHHHHHhCCCccccc---ccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhh
Confidence 89999999984 3333445543 24799999999999999995 4455688999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL 184 (361)
Q Consensus 107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll 184 (361)
+||+||.+|.+++..+. ++.++++++..||.+.. ||||..+.++|.|+|.+|||+++.+++
T Consensus 151 ~TYAAVnaL~~~~~e~A-----------------~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasll 213 (423)
T KOG0365|consen 151 PTYAAVNALCLCGSEDA-----------------YSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLL 213 (423)
T ss_pred HHHHHHHHHHhcCcHHH-----------------HHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHH
Confidence 99999999999998544 24568999999999754 999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404 185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK 259 (361)
Q Consensus 185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK 259 (361)
|...++-.+.+.+||.+||+++||||..|+.|+|+++||||+|+|.. ..+..|+++|++|..+||+ +||+||+||
T Consensus 214 ni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNK 293 (423)
T KOG0365|consen 214 NIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNK 293 (423)
T ss_pred CCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccc
Confidence 99877778999999999999999999999999999999999999863 5677899999999999998 999999999
Q ss_pred CCcccccchHHHHHHHhhcc-----C-----cccHHHHHHHHH-hccCCCCCcCCCCCCCCChHHHHHHH--HHhcccCC
Q psy6404 260 PVDTCYTFWIGASLSILNSA-----T-----WIDEERLLLSVL-DTQHMTGGLSKWSDTQADILHTYLEA--MSHASRNK 326 (361)
Q Consensus 260 ~~D~CYsfW~~a~L~~L~~~-----~-----~~~~~~~~~~il-~~Q~~~GGf~~~p~~~~D~~hT~~a~--~sl~~~~~ 326 (361)
+||+|||||++|+..||+.. + .+|.+++++||+ +||.+.|||+|+|++++|+|||||-+ +|++++..
T Consensus 294 LVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~ 373 (423)
T KOG0365|consen 294 LVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYS 373 (423)
T ss_pred hhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhc
Confidence 99999999999999999874 1 578899999987 99999999999999999999999954 67777766
Q ss_pred Cccc
Q psy6404 327 LKER 330 (361)
Q Consensus 327 ~~~~ 330 (361)
+.+-
T Consensus 374 ~~~~ 377 (423)
T KOG0365|consen 374 CAPS 377 (423)
T ss_pred cCCC
Confidence 5443
No 6
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-65 Score=468.22 Aligned_cols=305 Identities=25% Similarity=0.329 Sum_probs=265.9
Q ss_pred HHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC-cccHHHHHHHHHhcCCCCCC
Q psy6404 16 LEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS-GMDRARCLEFIFRSLSYDGA 94 (361)
Q Consensus 16 L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~-~~~~~~~i~~i~~~q~~dGG 94 (361)
+..+ .++-..+.+++++.|+..+-...--+.... ...++++.+||....+.+++... ..++++.+.++++|+.++||
T Consensus 16 ~~~f-~~~~l~L~~~~H~~yl~~~~~~~~~~~~~l-~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~ 93 (342)
T COG5029 16 HRKF-FSRHLQLLPDKHIGYLVERMAITFPSLFGL-LEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGG 93 (342)
T ss_pred HHHh-cCcccccccchHHHHHHHhhhccccchhhh-hhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCC
Confidence 3344 333344668999999997633222122221 12478999999999999999765 67899999999999999999
Q ss_pred CCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCcc
Q psy6404 95 FGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTC 172 (361)
Q Consensus 95 F~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~ 172 (361)
|+++|++++|+.+||+||++|.+++.++. +++.+++++.+||..+| ||+|++.-.+|+|+|
T Consensus 94 f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~-----------------~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr 156 (342)
T COG5029 94 FGGGPGQDSHLASTVFAIQSLAMLDSLDV-----------------LSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTR 156 (342)
T ss_pred cCCCCccchhHHHHHHHHHHHHHhccccc-----------------cchhhHHHHHHHHHhccCCCCceecccCCcchHH
Confidence 99999999999999999999999987643 34568889999999877 999999988999999
Q ss_pred chhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhh-HHHHHHHHHHhh
Q psy6404 173 YTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQ-IESLKRWLIFRQ 249 (361)
Q Consensus 173 ~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~-~~~l~~WL~~rQ 249 (361)
..|+|+++++++|.++.++.+.+++||++|||+|||||..|+.|||+++||||+++|.. .+++.+ ++++++||.+||
T Consensus 157 ~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ 236 (342)
T COG5029 157 FLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQ 236 (342)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999864 566665 799999999999
Q ss_pred c--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCCCChHHHHHHH--HHhccc
Q psy6404 250 R--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLEA--MSHASR 324 (361)
Q Consensus 250 ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~ 324 (361)
. ||||||+||++|+|||||++++|.||+...|+|.+++++||+.||.+ .|||+|+|++.||+|||+|++ +|++..
T Consensus 237 ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~ 316 (342)
T COG5029 237 LSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEY 316 (342)
T ss_pred cccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhcc
Confidence 7 99999999999999999999999999999999999999999977755 999999999999999999975 688888
Q ss_pred CCCccccccCCCCcc
Q psy6404 325 NKLKERNFQLPLDKK 339 (361)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (361)
..++|++|.+++..+
T Consensus 317 k~l~~v~p~~clP~e 331 (342)
T COG5029 317 KYLNPVDPIYCLPQE 331 (342)
T ss_pred CCCCCCCCcccCCHH
Confidence 889999999887653
No 7
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=7.2e-63 Score=470.35 Aligned_cols=274 Identities=27% Similarity=0.343 Sum_probs=246.1
Q ss_pred HHHHHHHHHhccC-CCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch
Q psy6404 29 RLQISTSLRSFTT-PCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG 106 (361)
Q Consensus 29 ~~~~~~~L~~~Q~-~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~ 106 (361)
|++|++|++++.. .+++|.+. ..++++.+||++.+|.+|+. ...++++++++||++||++||||++.+++++|+.
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~---d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~ 77 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSL---DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLA 77 (299)
T ss_pred ChHHHHHHHHHhhcCCcccccc---ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHH
Confidence 5789999999765 56777765 24789999999999999986 5567799999999999999999999999999999
Q ss_pred hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL 184 (361)
Q Consensus 107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll 184 (361)
+||+|+++|.+++..+. ++..+++++++||.++| ||||...+++|+|+|+|||+++++.+|
T Consensus 78 ~Ty~A~~~L~ll~~~~~-----------------~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL 140 (299)
T cd02893 78 TTYAAVNALAIIGTEEA-----------------YDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLL 140 (299)
T ss_pred HHHHHHHHHHHhCCchh-----------------hhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHh
Confidence 99999999999996321 13457889999999988 999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404 185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK 259 (361)
Q Consensus 185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK 259 (361)
+..+.++.+++++||++||++||||+..|+.|+|+++||||+++|.. ..+..+++++++||.+||. |||+|||||
T Consensus 141 ~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k 220 (299)
T cd02893 141 NILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNK 220 (299)
T ss_pred CCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCC
Confidence 98878889999999999999999999999999999999999999864 3445689999999999996 899999999
Q ss_pred CCcccccchHHHHHHHhhcc-------------CcccHHHHHHHHHhc-cCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 260 PVDTCYTFWIGASLSILNSA-------------TWIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 260 ~~D~CYsfW~~a~L~~L~~~-------------~~~~~~~~~~~il~~-Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
++|+|||||++++|++++.. .++|.+++++||+.| |+..|||+|+|++.||+|||||++++|+
T Consensus 221 ~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Ls 297 (299)
T cd02893 221 LVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLS 297 (299)
T ss_pred CCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHh
Confidence 99999999999999999974 468999999999955 5679999999999999999999987665
No 8
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=4.2e-60 Score=452.67 Aligned_cols=272 Identities=26% Similarity=0.381 Sum_probs=241.4
Q ss_pred HHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcCCC---cccHHHHHHHHHhcC----CCCCCCCCCCC
Q psy6404 29 RLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDDWS---GMDRARCLEFIFRSL----SYDGAFGQGPC 100 (361)
Q Consensus 29 ~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~---~~~~~~~i~~i~~~q----~~dGGF~~~p~ 100 (361)
++++++|+.++.++ +.+|... ..++++.+||+|.+|.+|+... .++++++++||.+|| ++||||++.++
T Consensus 1 ~~~H~~y~~~~l~~lp~~~~~~---d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~ 77 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSSYQSL---DTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSST 77 (307)
T ss_pred ChHHHHHHHHHhhhCCchhhhh---hhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Confidence 46899999987543 3445443 3478999999999999998643 688999999999999 99999999886
Q ss_pred ----------CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCC---
Q psy6404 101 ----------LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRP--- 165 (361)
Q Consensus 101 ----------~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~--- 165 (361)
+++|+++||+|+++|.+|+.. . +..+++++++||.++| ||||.+.+
T Consensus 78 ~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~--~-----------------~~idr~~i~~~l~~~q~~dGgF~~~~~~~ 138 (307)
T cd02895 78 LGLPGTASKYDTGNLAMTYFALLSLLILGDD--L-----------------SRVDRKAILNFLSKLQLPDGSFGSVLDSE 138 (307)
T ss_pred CccccccccCCcccHHHHHHHHHHHHHhCCc--h-----------------hhhhHHHHHHHHHHhCCCCCCccCCcCCc
Confidence 479999999999999999862 1 1247899999999988 99999987
Q ss_pred CCCCCccchhHHHHHHHHhhhhc--cccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccc---hhhH
Q psy6404 166 NKPVDTCYTFWIGASLSILNAAT--WIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RII---KTQI 238 (361)
Q Consensus 166 ~~~~D~~~ty~a~~~L~ll~~~~--~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~---~~~~ 238 (361)
++|+|+++||||++++.+|+..+ .+|.+++++||++||++||||+..|+.|+|+++||||+++|.. ... ..+.
T Consensus 139 ~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~ 218 (307)
T cd02895 139 GGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFL 218 (307)
T ss_pred CCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccH
Confidence 78999999999999999999765 5789999999999999999999999999999999999999863 232 5789
Q ss_pred HHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHH
Q psy6404 239 ESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTY 315 (361)
Q Consensus 239 ~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~ 315 (361)
+++++||.+||. |||+|||||++|+|||||++++|.||+..+++|.+++++||+.||+ ..|||+++|++.||+||||
T Consensus 219 ~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~ 298 (307)
T cd02895 219 ERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSY 298 (307)
T ss_pred HHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHH
Confidence 999999999997 8999999999999999999999999999999999999999998885 5999999999999999999
Q ss_pred HHHHHhc
Q psy6404 316 LEAMSHA 322 (361)
Q Consensus 316 ~a~~sl~ 322 (361)
+++.+|+
T Consensus 299 ~~la~Ls 305 (307)
T cd02895 299 LGLAALS 305 (307)
T ss_pred HHHHHHH
Confidence 9987664
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.3e-59 Score=444.69 Aligned_cols=274 Identities=23% Similarity=0.373 Sum_probs=247.0
Q ss_pred hHHHHHHHHHhccCC--CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcC-CCCCCCCCCCCCccC
Q psy6404 28 YRLQISTSLRSFTTP--CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSL-SYDGAFGQGPCLESH 104 (361)
Q Consensus 28 ~~~~~~~~L~~~Q~~--dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q-~~dGGF~~~p~~~sh 104 (361)
++++|++|++++.+. +..|... ..++++.+||++.++.+|+.....+++++++||++|| +++|||++.++.++|
T Consensus 2 ~~~~h~~y~~~~~~~~~~~~~~~~---~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~ 78 (287)
T cd02894 2 LLEKHIEYILSLTKKKDDYEYILT---EHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPH 78 (287)
T ss_pred CHHHHHHHHHHhccccCChhhhhH---HhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcch
Confidence 589999999998774 3333332 3478999999999999999877788999999999999 789999999999999
Q ss_pred chhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHH
Q psy6404 105 GGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLS 182 (361)
Q Consensus 105 ~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ 182 (361)
+.+||+|+.+|.+++..+.+ ...++++++||.++| ||||.+.+++++|+++||||++++.
T Consensus 79 ~~~t~~a~~~L~ll~~~~~i------------------~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ 140 (287)
T cd02894 79 ILSTLSAIQILALYDLLNKI------------------DENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLT 140 (287)
T ss_pred HHHHHHHHHHHHHhhhhhhc------------------cHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHH
Confidence 99999999999999753322 113789999999988 9999999999999999999999999
Q ss_pred HhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCCC
Q psy6404 183 ILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRPN 258 (361)
Q Consensus 183 ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~n 258 (361)
+++..+.++++++++||++||++||||+..|+.|+|.++||||+++|.. ..+..+++++++||.+||. |||+||||
T Consensus 141 ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~ 220 (287)
T cd02894 141 LLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPE 220 (287)
T ss_pred HhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCC
Confidence 9998778899999999999999999999999999999999999999864 3455689999999999997 99999999
Q ss_pred CCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccC-CCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 259 KPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 259 K~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~-~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
|.+|+|||||++++|.+|+..+|+|.+++++||++||+ +.|||+++|++.||+||||+++++|+
T Consensus 221 k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Ls 285 (287)
T cd02894 221 KLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLS 285 (287)
T ss_pred CCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999994 79999999999999999999987765
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.9e-55 Score=417.66 Aligned_cols=274 Identities=31% Similarity=0.449 Sum_probs=245.6
Q ss_pred HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcC-CCCCCCCCCCCCccCch
Q psy6404 29 RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSL-SYDGAFGQGPCLESHGG 106 (361)
Q Consensus 29 ~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q-~~dGGF~~~p~~~sh~~ 106 (361)
++++++||+++++.+ .+... ....++++.+||++.++.+|+. .+..+++++++||++|| ++||||+..++.++|+.
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~-~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~ 78 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYT-SLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLA 78 (286)
T ss_pred ChHHHHHHHHHhhcC-Chhhh-hHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHH
Confidence 478999999987765 22222 1235799999999999999997 66788999999999999 99999999999999999
Q ss_pred hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404 107 STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSIL 184 (361)
Q Consensus 107 ~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll 184 (361)
.||+|+.+|.+++.. . .+..+++++++||.++| ||||.+++.+++|+++|||++++|.++
T Consensus 79 ~T~~al~~l~llg~~-~-----------------~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll 140 (286)
T cd02890 79 STYAAVLSLAILGDD-A-----------------LSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLL 140 (286)
T ss_pred HHHHHHHHHHHcCcc-c-----------------cchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHh
Confidence 999999999999962 1 12247889999999988 999999999999999999999999999
Q ss_pred hhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCC
Q psy6404 185 NAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNK 259 (361)
Q Consensus 185 ~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK 259 (361)
+....++.+++++||++||++||||+..|+.++|..+||||+++|.. ..+..+++++++||.+||. |||+||+||
T Consensus 141 ~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~ 220 (286)
T cd02890 141 NILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNK 220 (286)
T ss_pred CCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCC
Confidence 98767889999999999999999999999999999999999999864 3456789999999999997 499999999
Q ss_pred CCcccccchHHHHHHHhhccCcccHHHHHHHHH-hccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 260 PVDTCYTFWIGASLSILNSATWIDEERLLLSVL-DTQHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 260 ~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il-~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
.+|+||+||++++|.+|+...|+|.+++.+||+ ++|.+.|||+++|++.||+||||+++++|+
T Consensus 221 ~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~ls 284 (286)
T cd02890 221 LVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLS 284 (286)
T ss_pred CCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHH
Confidence 999999999999999999988999999999999 678899999999999999999999987765
No 11
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=3.7e-49 Score=377.26 Aligned_cols=255 Identities=22% Similarity=0.210 Sum_probs=229.8
Q ss_pred CCchhHHHHHHHHHHccCCCCC--ChhhHHHHHHHHHhcc----CCCCcccccCCC---------CCCchhHHHHHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGVL--ALVYRLQISTSLRSFT----TPCFSFKCTLAD---------GDCDMRFVFCACSIC 67 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~l--~~~~~~~~~~~L~~~Q----~~dG~f~~~~~~---------~~~d~~~ty~al~~l 67 (361)
+++++.||++|.+|++| |++. +.++|+++++||+++| +++|||.+.+.. ++++++.||+|+.++
T Consensus 24 ~~r~~~~yf~l~~L~lL-~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L 102 (307)
T cd02895 24 TNRLTIAFFALSGLDLL-GALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSL 102 (307)
T ss_pred hhhHHHHHHHHHHHHHh-CCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHH
Confidence 56789999999999999 7665 5789999999999999 999999987521 368999999999999
Q ss_pred HHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCC---CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCCh
Q psy6404 68 YILDD-WSGMDRARCLEFIFRSLSYDGAFGQGP---CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143 (361)
Q Consensus 68 ~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p---~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~ 143 (361)
.+|+. ++.++++++++||++||++||||++.+ ++|+|++.|||||+++.+++..+. +.
T Consensus 103 ~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~------------------~~ 164 (307)
T cd02895 103 LILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE------------------ED 164 (307)
T ss_pred HHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc------------------cc
Confidence 99975 445789999999999999999999997 889999999999999999997432 01
Q ss_pred HhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc---cccHHHHHHHHHhccCCCCCCCCCCCCCCc
Q psy6404 144 PQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT---WIDEERLLLSVLDTQHMTGGLSKWSDTQAD 218 (361)
Q Consensus 144 ~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~---~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~ 218 (361)
.+++++++||.+|| ||||.+.|+.|+|+++||||+++|.+|+... .++.+++++||++||+++|||+..|+.++|
T Consensus 165 ~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D 244 (307)
T cd02895 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPAD 244 (307)
T ss_pred ccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCc
Confidence 37899999999999 9999999999999999999999999999865 689999999999999999999999999999
Q ss_pred hhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404 219 ILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSIL 276 (361)
Q Consensus 219 ~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L 276 (361)
..+|||++++|.. .....+.+++.+||.++|. |||++||.|.+|.|++||.+++|.++
T Consensus 245 ~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 245 TCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred cchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 9999999999863 3445789999999999874 99999999999999999999999875
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=3.1e-48 Score=368.40 Aligned_cols=250 Identities=24% Similarity=0.288 Sum_probs=227.3
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc-CCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCccc--HHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT-TPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMD--RAR 80 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~--~~~ 80 (361)
.-++.||++|.+|.+| | .++.++|+++++||+++| +++|+|.+.+ +.++++..||+|+.++.+++.+..++ +++
T Consensus 28 ~r~~~~y~~l~~l~lL-~-~~~~~~~~~~i~fl~~~q~~~~GgF~~~~-~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~ 104 (287)
T cd02894 28 LRMSGIYWGLTALDLL-G-QLERLNREEIIEFVKSCQDNEDGGFGGSP-GHDPHILSTLSAIQILALYDLLNKIDENKEK 104 (287)
T ss_pred hHHHHHHHHHHHHHHh-C-CCchhhHHHHHHHHHHHhcCCCCCCCCCC-CCcchHHHHHHHHHHHHHhhhhhhccHHHHH
Confidence 3467899999999999 4 577889999999999999 7799999874 55689999999999999987655566 999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R 158 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d 158 (361)
+++||++||++||||++.+++++|+.+||||+++|.+++..+. ++++++++||.++| |
T Consensus 105 ~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~--------------------i~~~~~~~~l~~~q~~d 164 (287)
T cd02894 105 IAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDL--------------------IDVDKAVDYLLSCYNFD 164 (287)
T ss_pred HHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcch--------------------hhHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999986432 37899999999998 9
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchh
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKT 236 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~ 236 (361)
|||.+++++++|+++|||++++|.+++..+.++.+++++||.+||+++|||+..|+.++|..+|||++++|.. .....
T Consensus 165 GGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~ 244 (287)
T cd02894 165 GGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWI 244 (287)
T ss_pred CCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcccccc
Confidence 9999999999999999999999999998888899999999999999999999999999999999999999853 33346
Q ss_pred hHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404 237 QIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSIL 276 (361)
Q Consensus 237 ~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L 276 (361)
+.+++.+||.++|. |||++||+|.+|+||+||.+++|.+|
T Consensus 245 ~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl~ 287 (287)
T cd02894 245 NKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287 (287)
T ss_pred CHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHhC
Confidence 78999999999984 99999999999999999999999875
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=359.93 Aligned_cols=251 Identities=20% Similarity=0.268 Sum_probs=231.3
Q ss_pred hhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy6404 6 EAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFI 85 (361)
Q Consensus 6 ~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i 85 (361)
++.+||+|.+|++| +.++.++++++++||++||+++|+|++.+ +.++++..||+|+.+|.+++.++.++++++++||
T Consensus 37 ~~~~y~~l~~L~lL--~~~~~~~~~~~i~~l~~cq~~~GGF~~~~-~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l 113 (316)
T PLN03201 37 MNGAYWGLTALDLL--GKLDDVDRDEVVSWVMRCQHESGGFGGNT-GHDPHILYTLSAVQILALFDRLDLLDADKVASYV 113 (316)
T ss_pred HHHHHHHHHHHHHh--CCCccccHHHHHHHHHHhcCCCCCcCCCC-CCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44699999999999 45788899999999999999999999874 5578999999999999999888788999999999
Q ss_pred HhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404 86 FRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG 163 (361)
Q Consensus 86 ~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~ 163 (361)
.++|++||||++.+++++|+.+||||++++.+++..+. ++++++++||.+|| ||||.+
T Consensus 114 ~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~--------------------i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 114 AGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDK--------------------INVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred HHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccch--------------------hHHHHHHHHHHHhcCCCCCcCC
Confidence 99999999999999999999999999999999986432 37899999999999 999999
Q ss_pred CCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHH
Q psy6404 164 RPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESL 241 (361)
Q Consensus 164 ~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l 241 (361)
+|++|+|.++|||++++|.+++..+.+|.+++++||.+||+++|||...|+..+|..|||+++++|.. .....|.+++
T Consensus 174 ~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l 253 (316)
T PLN03201 174 TPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKL 253 (316)
T ss_pred CCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999864 3345688999
Q ss_pred HHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHhhcc
Q psy6404 242 KRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSA 279 (361)
Q Consensus 242 ~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L~~~ 279 (361)
.+|+.++|. |||.+||+|.+|.|||||.+++|.+++..
T Consensus 254 ~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~lsl~~~~ 294 (316)
T PLN03201 254 AKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYP 294 (316)
T ss_pred HHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHHhcCCC
Confidence 999999986 99999999999999999999999999863
No 14
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.3e-45 Score=350.37 Aligned_cols=252 Identities=26% Similarity=0.320 Sum_probs=230.0
Q ss_pred CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc-CCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT-TPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRA 79 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q-~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~ 79 (361)
+.+++.||++|++|++| |..++..+++++++||+++| +++|+|... ++++++++.||+|+.++.+++. .+.++++
T Consensus 24 ~~~~~~~y~~l~~l~ll-~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~-~~~~~~~~~T~~al~~l~llg~~~~~~~~~~ 101 (286)
T cd02890 24 ASRLWLLYWILSSLDLL-GEDLDDENKDEIIDFIYSCQVNEDGGFGGG-PGQDPHLASTYAAVLSLAILGDDALSRIDRE 101 (286)
T ss_pred hhHHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHhhcCCCCCCCCC-CCCCccHHHHHHHHHHHHHcCccccchhhHH
Confidence 56789999999999999 77789999999999999999 999999987 3567899999999999999997 5678899
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--
Q psy6404 80 RCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-- 157 (361)
Q Consensus 80 ~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-- 157 (361)
++++||.++|++||||+..++.++|+..||||+++|.+++... .++++++++||.++|
T Consensus 102 ~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~--------------------~~~~~~~~~~l~~~Q~~ 161 (286)
T cd02890 102 KIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT--------------------DIDKEKLIDYILSCQNY 161 (286)
T ss_pred HHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch--------------------hhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999742 237899999999998
Q ss_pred CCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCC-CCCCCCCCCCchhhhhhhhhhccc--ccc
Q psy6404 158 RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTG-GLSKWSDTQADILHTYLGEFFVRP--RII 234 (361)
Q Consensus 158 dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dG-Gf~~~p~~~s~~~~T~~ala~L~~--~~~ 234 (361)
||||.++|++++|+++|||++++|.+++..+.++++++++||.+||+++| ||+..|+.++|..||||++++|.. ...
T Consensus 162 dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~ 241 (286)
T cd02890 162 DGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLH 241 (286)
T ss_pred CCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccccc
Confidence 99999999999999999999999999998888999999999999999987 999999999999999999999853 333
Q ss_pred hhhHHHHHHHHHHhh-c--CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404 235 KTQIESLKRWLIFRQ-R--SGFQGRPNKPVDTCYTFWIGASLSIL 276 (361)
Q Consensus 235 ~~~~~~l~~WL~~rQ-~--gGF~GR~nK~~D~CYsfW~~a~L~~L 276 (361)
..+.+++.+||.++| . |||++||+|.+|.||+||.+++|.++
T Consensus 242 ~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl~ 286 (286)
T cd02890 242 LIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSLL 286 (286)
T ss_pred ccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHcC
Confidence 467899999999554 3 99999999999999999999999864
No 15
>KOG0367|consensus
Probab=100.00 E-value=1.4e-45 Score=335.49 Aligned_cols=210 Identities=47% Similarity=0.789 Sum_probs=198.3
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~ 83 (361)
++.+.||+++.+|.+| |++++.+||+.++++++.+|+|||+|.....++++||+++|||.+++++|+.++.+|.++++.
T Consensus 103 ~~lA~Ty~sl~~L~~l-GddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~ 181 (347)
T KOG0367|consen 103 PHLAMTYTSLACLVIL-GDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIG 181 (347)
T ss_pred hhHHHHHHHHHHHHHH-cchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHH
Confidence 6889999999999999 999999999999999999999999999988888999999999999999999899999999999
Q ss_pred HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccc--cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CC
Q psy6404 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKL--DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RS 159 (361)
Q Consensus 84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~--~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dG 159 (361)
||++||++||||+..|+.|+|+++|||||++|.+++++ +++ .+..+++++++|+.+|| +|
T Consensus 182 yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l----------------~~~~~~erlirWli~RQ~~sg 245 (347)
T KOG0367|consen 182 YIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEEL----------------SNTSKVERLIRWLIQRQVSSG 245 (347)
T ss_pred HHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhh----------------ccccCHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999986 332 23446899999999999 89
Q ss_pred ccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404 160 GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR 230 (361)
Q Consensus 160 gF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~ 230 (361)
||+|+++|++|+||+||+.++|.+|+....+|.+...+||++||.. -|||++.|+..||..|||.++++|.
T Consensus 246 GfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~ala 317 (347)
T KOG0367|consen 246 GFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALA 317 (347)
T ss_pred CcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHH
Confidence 9999999999999999999999999998889999999999999998 5999999999999999999999875
No 16
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.1e-43 Score=348.88 Aligned_cols=254 Identities=16% Similarity=0.207 Sum_probs=228.8
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRAR 80 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~ 80 (361)
.-++.|||+|++|++| |++++..+|+++++||++||+++|||++.+ +.+++++.||+|+.+|.+|+. ++.+++++
T Consensus 70 ~r~~~~Yw~L~sL~lL-g~~l~~~~~~~ii~~l~~cQ~~dGGFgg~p-g~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~ 147 (439)
T PLN02710 70 NRPWLCYWILHSIALL-GESLDDELENDTIDFLSRCQDPNGGYGGGP-GQLPHLATTYAAVNTLVTIGGERALSSINREK 147 (439)
T ss_pred hhHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHhcCCCcCCCCCC-CCCccHHHHHHHHHHHHHcCCchhhcccCHHH
Confidence 4578999999999999 777889999999999999999999999984 668999999999999999984 56789999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R 158 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d 158 (361)
+++||++||++||||+..+++|+|+++||||++++.+++.++. .+.+++++||.+|| |
T Consensus 148 l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~--------------------~~~e~~~~~I~scQ~~d 207 (439)
T PLN02710 148 LYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDD--------------------ELVKGVGDYILSCQTYE 207 (439)
T ss_pred HHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCch--------------------hhHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999987432 36789999999999 9
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccc--
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RII-- 234 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~-- 234 (361)
|||.++|++|+|++||||++++|.+|+..+.+|.+++++||.+||+.+|||+..|+..+|+.|+|+.+++|.. .+.
T Consensus 208 GGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~ 287 (439)
T PLN02710 208 GGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTI 287 (439)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999888999999999999999999999999999999999999988742 110
Q ss_pred ---------------------------------------------------------hhhHHHHHHHHHHhhc---CCCC
Q psy6404 235 ---------------------------------------------------------KTQIESLKRWLIFRQR---SGFQ 254 (361)
Q Consensus 235 ---------------------------------------------------------~~~~~~l~~WL~~rQ~---gGF~ 254 (361)
-.+.+.|.+|+..-|. |||.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~ 367 (439)
T PLN02710 288 VDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLR 367 (439)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcC
Confidence 0245688899977643 9999
Q ss_pred CCCCCCCcccccchHHHHHHHhhcc
Q psy6404 255 GRPNKPVDTCYTFWIGASLSILNSA 279 (361)
Q Consensus 255 GR~nK~~D~CYsfW~~a~L~~L~~~ 279 (361)
-+|+|.+|..=+++.++.|.+++-.
T Consensus 368 DkPgk~~D~YHT~y~LsGLSl~q~~ 392 (439)
T PLN02710 368 DKPGKSRDYYHTCYCLSGLSVAQYS 392 (439)
T ss_pred CCCCCCCchhHHHHHHHHHHHHhhc
Confidence 9999999998899999999999853
No 17
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1.5e-43 Score=337.49 Aligned_cols=250 Identities=23% Similarity=0.289 Sum_probs=226.4
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRAR 80 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~ 80 (361)
..++.|||+|++|++| |.+++.++|+++++||+++|+++|+|.+. ++++++++.||+|+.+|.+|+. ++.+++++
T Consensus 25 ~~~~~~y~~l~~l~lL-~~~~~~~~~~~~i~~i~~~q~~~GgF~~~-~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~ 102 (299)
T cd02893 25 SRPWLLYWILHSLELL-GEELDQSYADDVISFLRRCQNPSGGFGGG-PGQLPHLATTYAAVNALAIIGTEEAYDVIDREA 102 (299)
T ss_pred ccHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHhcCCCCCCCCC-CCCCccHHHHHHHHHHHHHhCCchhhhHhhHHH
Confidence 4679999999999999 76688889999999999999999999997 4568999999999999999986 45678999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R 158 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d 158 (361)
+++||.+||++||||+..++.|+|++.||||++++.+|+..+ ..+++++++||.+|| |
T Consensus 103 ~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~--------------------~~~~~~~~~~l~~cQ~~d 162 (299)
T cd02893 103 LYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILT--------------------DELFEGVAEYILSCQTYE 162 (299)
T ss_pred HHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCc--------------------hhhHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999998643 236789999999999 9
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhccc--c---
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVRP--R--- 232 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~~--~--- 232 (361)
|||.++|++|+|+++|||++++|.+|+..+.+|.+++++||++||++ +|||...|+..+|..|||+.+++|.. .
T Consensus 163 GGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~ 242 (299)
T cd02893 163 GGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILN 242 (299)
T ss_pred CCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988889999999999999998 99999999999999999999998753 1
Q ss_pred ----------cchhhHHHHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHH
Q psy6404 233 ----------IIKTQIESLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSI 275 (361)
Q Consensus 233 ----------~~~~~~~~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~ 275 (361)
....+.+++.+||..+|. |||+.+|+|.+|..=++..+++|.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 243 AEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALSGLSI 298 (299)
T ss_pred ccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHHHHhc
Confidence 123578999999997654 9999999999998888888888765
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-42 Score=314.71 Aligned_cols=207 Identities=36% Similarity=0.610 Sum_probs=193.5
Q ss_pred CCchhHHHHHHHHHHccCC--CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPP--GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRAR 80 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g--~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~ 80 (361)
++|.+.|++||++|.++ + +.++.++|+.+.+||..+|+|||+|.+... ++.|.+++|.|++++++|+.++.++.+.
T Consensus 101 ~~hL~sT~~Ai~~L~~~-d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~-gevDtr~~Y~al~ilsllg~~~~~~~e~ 178 (342)
T COG5029 101 DSHLASTVFAIQSLAML-DSLDVLSRIDRDSLASFISGLKNPDGSFRSDLE-GEVDTRFLYIALSILSLLGDLDKELFEG 178 (342)
T ss_pred chhHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHhccCCCCceecccC-CcchHHHHHHHHHHHHHHhhcchhhhHH
Confidence 57899999999999999 4 345677888999999999999999999864 6899999999999999999888899999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R 158 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d 158 (361)
.++||++|||.|||||..|+.|+|.++||||+++|++|+.++.+ .+.+++++||..|| .
T Consensus 179 ~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~l-------------------s~~E~l~~Wl~~RQ~ss 239 (342)
T COG5029 179 AVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKL-------------------SDVEKLIRWLAERQLSS 239 (342)
T ss_pred HHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccccc-------------------chHHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999998764 13789999999999 9
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR 230 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~ 230 (361)
|||.||++|.+|+||+||+.++|.|++....+|.+++.+||+.||.. .|||+..|+.++|.+||.+++++|.
T Consensus 240 gGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLs 312 (342)
T COG5029 240 GGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLS 312 (342)
T ss_pred CCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988 8999999999999999999999885
No 19
>KOG0366|consensus
Probab=100.00 E-value=4.8e-40 Score=294.62 Aligned_cols=205 Identities=30% Similarity=0.567 Sum_probs=194.9
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~ 83 (361)
+++-.|..||++|.+. +.++.+||+++..|++.+|++||+|.+. ..++-|++++|||++.|++|+..+.++.+++++
T Consensus 93 ~hll~TlsAvQiL~~y--dsi~~~d~d~v~~yi~gLq~edGsF~gD-~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd 169 (329)
T KOG0366|consen 93 PHLLYTLSAVQILALY--DSINVLDRDKVASYIKGLQQEDGSFSGD-IWGEVDTRFSYCAVACLALLGKLDTINVEKAVD 169 (329)
T ss_pred hHHHHHHHHHHHHHHH--cccccccHHHHHHHHHhhcCcCCcccCC-cccccchhhhHHHHHHHHHHhhHHHhhHHHHHH
Confidence 6778899999999999 8999999999999999999999999987 467899999999999999999888899999999
Q ss_pred HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcc
Q psy6404 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGF 161 (361)
Q Consensus 84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF 161 (361)
|+++|.|-|||||..|+.|||.+..||++.+|++++.++.+ |.+.+-.||..|| .||.
T Consensus 170 ~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~v--------------------d~d~lgwwlceRQ~~sGGL 229 (329)
T KOG0366|consen 170 FVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLV--------------------DRDLLGWWLCERQLPSGGL 229 (329)
T ss_pred HHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhc--------------------CHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999997664 7788889999999 8999
Q ss_pred ccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccC-CCCCCCCCCCCCCchhhhhhhhhhccc
Q psy6404 162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLGEFFVRP 231 (361)
Q Consensus 162 ~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~-~dGGf~~~p~~~s~~~~T~~ala~L~~ 231 (361)
.|+|.+.+|+||+||++++|.|++++..+|.+++++||++||. +.|||+..|+.+.|..||+.+||.|+.
T Consensus 230 NGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSL 300 (329)
T KOG0366|consen 230 NGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSL 300 (329)
T ss_pred CCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhh
Confidence 9999999999999999999999999999999999999999999 579999999999999999999999863
No 20
>KOG0365|consensus
Probab=100.00 E-value=2.1e-37 Score=287.03 Aligned_cols=205 Identities=35% Similarity=0.535 Sum_probs=188.7
Q ss_pred CchhHHHHHHHHHHccCCC--CCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPG--VLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC 81 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~--~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~ 81 (361)
++.+.||+||++|-++ |. +++.++|+++.+||.+++.|||||.... +++.|++.+|||+++..+++....+--+.+
T Consensus 147 ~HLA~TYAAVnaL~~~-~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~-~GE~DvRs~YcA~svasllni~~deL~eG~ 224 (423)
T KOG0365|consen 147 PHLAPTYAAVNALCLC-GSEDAYSSINREKLYQFLFSLKDPDGGFRMHV-EGEVDVRSAYCALSVASLLNIPMDELFEGT 224 (423)
T ss_pred hhhhHHHHHHHHHHhc-CcHHHHHHhhHHHHHHHHHHhcCCCCCeEeec-CCcchHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 6899999999999999 53 5788999999999999999999999884 578999999999999999998777778899
Q ss_pred HHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc---C
Q psy6404 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---R 158 (361)
Q Consensus 82 i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q---d 158 (361)
.+||.+||+.+||||+.|+.|.|+.+||||+++|++|+..+. .+.+++.+|..+|| +
T Consensus 225 ~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~--------------------ln~~~Ll~W~~~RQm~~E 284 (423)
T KOG0365|consen 225 LDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQ--------------------LNLEKLLEWAVRRQMRFE 284 (423)
T ss_pred HHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhh--------------------hCHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999998554 38899999999998 8
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhh----------ccccHHHHHHHHHh-ccCCCCCCCCCCCCCCchhhhhhhhh
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAA----------TWIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLGEF 227 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~----------~~~~~~~~~~~I~s-cQ~~dGGf~~~p~~~s~~~~T~~ala 227 (361)
|||+|+.+|.+|.||+||+.+.+.||... ...|.+++.+||+- ||.++|||...|+...|.+||+++|+
T Consensus 285 ~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLs 364 (423)
T KOG0365|consen 285 GGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLS 364 (423)
T ss_pred ccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhc
Confidence 99999999999999999999999998653 14788999999985 79999999999999999999999999
Q ss_pred hcc
Q psy6404 228 FVR 230 (361)
Q Consensus 228 ~L~ 230 (361)
.|.
T Consensus 365 GLS 367 (423)
T KOG0365|consen 365 GLS 367 (423)
T ss_pred chh
Confidence 886
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.97 E-value=1e-28 Score=231.10 Aligned_cols=272 Identities=20% Similarity=0.162 Sum_probs=225.7
Q ss_pred HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC------CCcccHHHHHHHHHhcCCCCCCCCCCCCC-c
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD------WSGMDRARCLEFIFRSLSYDGAFGQGPCL-E 102 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~-~ 102 (361)
++.++||.+.|.++|+|.... ....+..+++++..+..+.. .....++++++||.++|++||||+..++. .
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~ 79 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQSL--CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDY 79 (300)
T ss_pred hhHHHHHHHccccCCCccccC--CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCC
Confidence 578999999999999985542 24567778888877777653 23467899999999999999999998876 7
Q ss_pred cCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC-------CCCCccc
Q psy6404 103 SHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN-------KPVDTCY 173 (361)
Q Consensus 103 sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~-------~~~D~~~ 173 (361)
+++..|+.++.+|..++.... .....++++++||..+| +|||..... ...|...
T Consensus 80 ~~~~~T~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~ 142 (300)
T cd00688 80 PSLWLTAYALKALLLAGDYIA-----------------VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRL 142 (300)
T ss_pred cchHhHHHHHHHHHHcCCccc-----------------cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccH
Confidence 899999999999999886321 12347889999999888 899986543 3678999
Q ss_pred hhHHHHHHHHhhhhc-cccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccccc--chhhHHHHHHHHHHhhc
Q psy6404 174 TFWIGASLSILNAAT-WIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRI--IKTQIESLKRWLIFRQR 250 (361)
Q Consensus 174 ty~a~~~L~ll~~~~-~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~--~~~~~~~l~~WL~~rQ~ 250 (361)
|++++.+|.+++... ..+.+++++||.++|+.|||| .+..+++...|++++.+|.... ....++++++||.++|.
T Consensus 143 t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~ 220 (300)
T cd00688 143 TAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQR 220 (300)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcC
Confidence 999999999998643 457899999999999999999 6777889999999999986432 25678999999999987
Q ss_pred --CCCCCCC---CCCCcccccchHHHHHHHhhcc-CcccHHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 251 --SGFQGRP---NKPVDTCYTFWIGASLSILNSA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 251 --gGF~GR~---nK~~D~CYsfW~~a~L~~L~~~-~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
|||.... ++..|+|+++|++.+|..++.. .....+++.+||+..|..+|||...|...+|.+||++++++|.
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~ 298 (300)
T cd00688 221 PDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALS 298 (300)
T ss_pred CCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHh
Confidence 7887765 8899999999999999998863 2345578999999999999999999999999999999998764
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.94 E-value=6.3e-25 Score=205.45 Aligned_cols=250 Identities=24% Similarity=0.214 Sum_probs=206.7
Q ss_pred CchhHHHHHHHHHHccCCCC-----CChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCc
Q psy6404 4 AEEAVLETAVEVLEAVPPGV-----LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSG 75 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~-----l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~ 75 (361)
...+.|+.++..|..+ +.. .....+++.++||.+.|++||+|........++++.|++++.+|..++. ...
T Consensus 25 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~ 103 (300)
T cd00688 25 EQTWSTAWPLLALLLL-LAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDR 103 (300)
T ss_pred CcHHHHHHHHHHHHHh-CCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCH
Confidence 4567899999999988 542 3456789999999999999999988632225789999999999998875 345
Q ss_pred ccHHHHHHHHHhcCCCCCCCCCCCCC-------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH
Q psy6404 76 MDRARCLEFIFRSLSYDGAFGQGPCL-------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES 148 (361)
Q Consensus 76 ~~~~~~i~~i~~~q~~dGGF~~~p~~-------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~ 148 (361)
...+++++||.++|++||||...... .++...|++++.+|..++.... ...+++
T Consensus 104 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~-------------------~~~~~~ 164 (300)
T cd00688 104 IDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDP-------------------DPLIEK 164 (300)
T ss_pred HHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCC-------------------cHHHHH
Confidence 67899999999999999999776543 6788899999999999886321 236789
Q ss_pred HHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCC---CCCCchhhhh
Q psy6404 149 LKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWS---DTQADILHTY 223 (361)
Q Consensus 149 ~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p---~~~s~~~~T~ 223 (361)
+++||.++| +||| .++.+.|+..|+|++.+|.+++.......+++++||+++|+.+|||...+ ..+++..+|+
T Consensus 165 ~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~ 242 (300)
T cd00688 165 ALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTE 242 (300)
T ss_pred HHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHH
Confidence 999999887 9999 56778899999999999999986444568899999999999999999765 6678888888
Q ss_pred hhhhhccccc---chhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHH
Q psy6404 224 LGEFFVRPRI---IKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSI 275 (361)
Q Consensus 224 ~ala~L~~~~---~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~ 275 (361)
+++.+|.... .....+++++||.++|. |||.+++++..|+++++|++.+|..
T Consensus 243 ~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 243 WAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSL 299 (300)
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchhhHHHHHHHhc
Confidence 8888775422 34578899999998775 9999999999999999999988864
No 23
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.85 E-value=1.2e-19 Score=176.46 Aligned_cols=258 Identities=15% Similarity=0.079 Sum_probs=183.2
Q ss_pred HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHHHHHHHHHhcC--------------CCCC
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRARCLEFIFRSL--------------SYDG 93 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~~~i~~i~~~q--------------~~dG 93 (361)
++.++||++.|++||+|+... +++..|..++..|...+. ......+++++||.+.| .++|
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~----~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY----SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred chHHHHHHHhccCCCCccccC----CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 468999999999999998763 677778877777776664 34567899999999999 6889
Q ss_pred CCCCCCC--CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccC-CC--
Q psy6404 94 AFGQGPC--LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGR-PN-- 166 (361)
Q Consensus 94 GF~~~p~--~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~-~~-- 166 (361)
||+.... ..+++..|..++.+|..++..... ... .....+.++++||.++| ||||... +.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~-~~~------------~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~ 144 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPD-GKK------------VSRERLYDAVDWLLSMQNSNGGFAAFEPDNT 144 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcc-cch------------hhHHHHHHHHHHHHHhccCCCCEeeecCCcc
Confidence 8775432 234556788888888777754210 000 12346788999999988 9999742 11
Q ss_pred ----------------CCCCccchhHHHHHHHHhhhhcc-------ccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhh
Q psy6404 167 ----------------KPVDTCYTFWIGASLSILNAATW-------IDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY 223 (361)
Q Consensus 167 ----------------~~~D~~~ty~a~~~L~ll~~~~~-------~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~ 223 (361)
..++...|..++.+|..++.... ..++++++||+++|++||||....+ ..+...|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta 223 (348)
T cd02889 145 YKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTW 223 (348)
T ss_pred HHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHH
Confidence 12345557777777777765422 2357899999999999999964322 23455667
Q ss_pred hhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHHHHHhhccCcccHHHHH
Q psy6404 224 LGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGASLSILNSATWIDEERLL 288 (361)
Q Consensus 224 ~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~ 288 (361)
+++.+|.. ......++++++||.++|. |||.+.+ ...+|++++.|++-+|...+.......++..
T Consensus 224 ~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~ 303 (348)
T cd02889 224 FALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGV 303 (348)
T ss_pred HHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777743 1234578899999999987 7876532 2356788888998888777654333446778
Q ss_pred HHHHhccCCCCCcCCCC
Q psy6404 289 LSVLDTQHMTGGLSKWS 305 (361)
Q Consensus 289 ~~il~~Q~~~GGf~~~p 305 (361)
+||..+|+++|||...+
T Consensus 304 ~wL~~~Q~~dG~f~~~~ 320 (348)
T cd02889 304 KYLLNTQQEDGDWPQEE 320 (348)
T ss_pred HHHHHhcCCCCCcCCce
Confidence 99999999999998843
No 24
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.84 E-value=1.4e-19 Score=188.29 Aligned_cols=235 Identities=20% Similarity=0.098 Sum_probs=165.2
Q ss_pred CchhHHHHHHHHHHccCCCCC--ChhhHHHHHHHHHhccC--------------CCCcccccCC-CCCCchhHHHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVL--ALVYRLQISTSLRSFTT--------------PCFSFKCTLA-DGDCDMRFVFCACSI 66 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l--~~~~~~~~~~~L~~~Q~--------------~dG~f~~~~~-~~~~d~~~ty~al~~ 66 (361)
..+++|..++++|.-- |..- .....++..+||++.|. ++|||+.... .+.++.-.|--+|.+
T Consensus 304 s~~WDTala~~AL~e~-g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~A 382 (634)
T TIGR03463 304 SSEWDTAFAVQALAAT-PETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSA 382 (634)
T ss_pred CCchhHHHHHHHHHHc-CCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHH
Confidence 4458999999999766 4211 11235789999999984 4688876532 222344444445544
Q ss_pred HHHhcC--------CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHHH
Q psy6404 67 CYILDD--------WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLAL 117 (361)
Q Consensus 67 l~lL~~--------~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~l 117 (361)
+..+.. ......+++++||+++||+||||+.... ..+++..|..+|.+|..
T Consensus 383 l~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~ 462 (634)
T TIGR03463 383 SLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAA 462 (634)
T ss_pred HHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHH
Confidence 443321 1224577899999999999999985431 23567789999999988
Q ss_pred hccccc-cccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHH
Q psy6404 118 MNKLDT-LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEE 193 (361)
Q Consensus 118 lg~~~~-~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~ 193 (361)
++.... .++.++ ...++++++||++.| ||||.+.++ ..++..|++++.+|..++.. ....++
T Consensus 463 ~~~~~~~~~~~~i-------------~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~ 528 (634)
T TIGR03463 463 WRKHHPHVPDGRI-------------TRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQ 528 (634)
T ss_pred HhhcCcchhhhHH-------------HHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHH
Confidence 875322 111000 235788999999988 999987754 34556688899999887753 345578
Q ss_pred HHHHHHHhccCCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCC
Q psy6404 194 RLLLSVLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGF 253 (361)
Q Consensus 194 ~~~~~I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF 253 (361)
++++||++||++||||+.. ++.+|+...|++||.+|.. ......+++.++||.++|. ||+
T Consensus 529 rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W 602 (634)
T TIGR03463 529 RAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRW 602 (634)
T ss_pred HHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999752 4557889999999999964 2334568999999999997 544
No 25
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.82 E-value=1.5e-18 Score=180.65 Aligned_cols=226 Identities=14% Similarity=-0.044 Sum_probs=160.2
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccC-------------CCCcccccCC-CCCCchhHHHHHHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTT-------------PCFSFKCTLA-DGDCDMRFVFCACSICYI 69 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~-------------~dG~f~~~~~-~~~~d~~~ty~al~~l~l 69 (361)
+.+++|..++.+|... |-.-+.....+..+||++.|. +.|||+.... ...+|+..|-.+|.+|..
T Consensus 314 s~vWDTa~ai~AL~~a-g~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~ 392 (635)
T TIGR01507 314 SPVWDTALAVLALREA-GLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNG 392 (635)
T ss_pred CcHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHH
Confidence 4689999999999888 622233457899999999873 2567765422 224677777778877766
Q ss_pred hcCC----CcccHHHHHHHHHhcCCCCCCCCCCCC-------------------CccCchhhHHHHHHHHHhcccccccc
Q psy6404 70 LDDW----SGMDRARCLEFIFRSLSYDGAFGQGPC-------------------LESHGGSTYCALASLALMNKLDTLRP 126 (361)
Q Consensus 70 L~~~----~~~~~~~~i~~i~~~q~~dGGF~~~p~-------------------~~sh~~~Ty~Al~sL~llg~~~~~~~ 126 (361)
++.. .....+++++||+++||+||||+.... ..+.+..|-.++.+|...+...
T Consensus 393 ~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~---- 468 (635)
T TIGR01507 393 LRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDD---- 468 (635)
T ss_pred cCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCc----
Confidence 6421 134688999999999999999976431 1234456888888887776421
Q ss_pred chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhcc
Q psy6404 127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQ 203 (361)
Q Consensus 127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ 203 (361)
....++++++||...| ||||.++++ ..++..|..++.+|...+.. ....++++++||++||
T Consensus 469 ---------------~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q 532 (635)
T TIGR01507 469 ---------------AWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQ 532 (635)
T ss_pred ---------------hhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence 1246789999999888 999977654 22333333445555544421 2345789999999999
Q ss_pred CCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc
Q psy6404 204 HMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR 250 (361)
Q Consensus 204 ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~ 250 (361)
+.||||+.. +.++++...|.+||.+|.. ......+++.++||.++|.
T Consensus 533 ~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~ 591 (635)
T TIGR01507 533 NPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQR 591 (635)
T ss_pred CCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Confidence 999999853 2246888899999999964 2344578999999999987
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.82 E-value=7.1e-19 Score=183.98 Aligned_cols=236 Identities=14% Similarity=0.032 Sum_probs=163.1
Q ss_pred CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccC--------------CCCcccccC-CCCCCchhHHHHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTT--------------PCFSFKCTL-ADGDCDMRFVFCACSI 66 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~--------------~dG~f~~~~-~~~~~d~~~ty~al~~ 66 (361)
...+++|..++++|.-. |.. -.....++.++||++.|. +.|+|+... ....+++..|-.++.+
T Consensus 305 ~s~~wDTala~~AL~~a-g~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~A 383 (634)
T cd02892 305 GSQVWDTALAVQALLEA-GLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKA 383 (634)
T ss_pred CCchHHHHHHHHHHHHc-CCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence 35689999999999877 532 122346789999999985 356665431 1222444456566666
Q ss_pred HHHhcCC-------CcccHHHHHHHHHhcCCCCCCCCCCC-C--------------------CccCchhhHHHHHHHHHh
Q psy6404 67 CYILDDW-------SGMDRARCLEFIFRSLSYDGAFGQGP-C--------------------LESHGGSTYCALASLALM 118 (361)
Q Consensus 67 l~lL~~~-------~~~~~~~~i~~i~~~q~~dGGF~~~p-~--------------------~~sh~~~Ty~Al~sL~ll 118 (361)
+..++.. .....+++++||+++|++||||+... . ..+++..|.++|.+|..+
T Consensus 384 L~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~ 463 (634)
T cd02892 384 LLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLF 463 (634)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHh
Confidence 6555432 22457889999999999999997431 1 135667899999999998
Q ss_pred ccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh--ccccHHH
Q psy6404 119 NKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA--TWIDEER 194 (361)
Q Consensus 119 g~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~--~~~~~~~ 194 (361)
+......+.++ ...++++++||.+.| ||||.++++ ...+..|++++.+|..++.. ....+++
T Consensus 464 ~~~~~~~r~~i-------------~~~i~rAv~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~ 529 (634)
T cd02892 464 GKLYPGHRREI-------------DPAIRRAVKYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRK 529 (634)
T ss_pred cccCcchHHHH-------------HHHHHHHHHHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHH
Confidence 86422100000 135788999999988 999977653 22333455566777766643 2346789
Q ss_pred HHHHHHhccCCCCCCCCCC----------CCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCC
Q psy6404 195 LLLSVLDTQHMTGGLSKWS----------DTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGF 253 (361)
Q Consensus 195 ~~~~I~scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF 253 (361)
+++||++||+.||||+..+ +.+++...|++||.+|.. ..+...++++++||.++|. |||
T Consensus 530 a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w 602 (634)
T cd02892 530 ACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDW 602 (634)
T ss_pred HHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999998532 345788899999999853 2345678999999999987 665
No 27
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.80 E-value=4.5e-18 Score=165.38 Aligned_cols=237 Identities=14% Similarity=0.028 Sum_probs=162.9
Q ss_pred CchhHHHHHHHHHHccCCC-CCChhhHHHHHHHHHhcc--------------CCCCcccccCCC-CCCchhHHHHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPG-VLALVYRLQISTSLRSFT--------------TPCFSFKCTLAD-GDCDMRFVFCACSIC 67 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~-~l~~~~~~~~~~~L~~~Q--------------~~dG~f~~~~~~-~~~d~~~ty~al~~l 67 (361)
.++.+|..++..|... |. .-.....++.++||.+.| .++|+|+..... +..+...|-.++.++
T Consensus 23 ~~~~~Ta~~~~al~~~-g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al 101 (348)
T cd02889 23 SQVWDTALALQALLEA-GLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 101 (348)
T ss_pred CchHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHH
Confidence 6788999999999888 54 123345789999999999 688988754221 112332344444444
Q ss_pred HHhcCC-------CcccHHHHHHHHHhcCCCCCCCCCCCC-------------------CccCchhhHHHHHHHHHhccc
Q psy6404 68 YILDDW-------SGMDRARCLEFIFRSLSYDGAFGQGPC-------------------LESHGGSTYCALASLALMNKL 121 (361)
Q Consensus 68 ~lL~~~-------~~~~~~~~i~~i~~~q~~dGGF~~~p~-------------------~~sh~~~Ty~Al~sL~llg~~ 121 (361)
..++.. .....+++++||+++|++||||..... ..+++..|.++|.+|..++..
T Consensus 102 ~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~ 181 (348)
T cd02889 102 LRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKL 181 (348)
T ss_pred HHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhc
Confidence 444432 234578899999999999999975321 235677899999999988863
Q ss_pred cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHH
Q psy6404 122 DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLS 198 (361)
Q Consensus 122 ~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~ 198 (361)
....+.+ + .+.++++++||...| +|||.+..+ ...+..|++++.+|..++.. .....+++++|
T Consensus 182 ~~~~~~~-------~------~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~ 247 (348)
T cd02889 182 YPEHRRE-------I------DPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDW 247 (348)
T ss_pred CCchHHH-------H------HHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 2210000 0 135678999999877 899975432 22333345566666666542 23457889999
Q ss_pred HHhccCCCCCCCCC----------CCCCCchhhhhhhhhhcccc--cchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 199 VLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRPR--IIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 199 I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~~--~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
|++||++||||+.. ++..++...|.++|.+|... .....+++.++||.++|. |||..
T Consensus 248 L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 248 LLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred HHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 99999999999853 34457888999999998642 345678899999999887 88866
No 28
>PLN02993 lupeol synthase
Probab=99.79 E-value=6.1e-18 Score=176.66 Aligned_cols=233 Identities=12% Similarity=0.020 Sum_probs=159.2
Q ss_pred CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccCC---------------CCcccccCC-CCCCchhHHHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTTP---------------CFSFKCTLA-DGDCDMRFVFCACS 65 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~~---------------dG~f~~~~~-~~~~d~~~ty~al~ 65 (361)
.+-+|+|..++++|.-- |-. -......+..+||++.|.. .|+|+.... .+.++.-.|--+|.
T Consensus 415 gSqvWDTa~a~qAl~~a-gl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lk 493 (763)
T PLN02993 415 GSQLWDTGFAIQALLAS-DLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALK 493 (763)
T ss_pred CCchHHHHHHHHHHHHc-CCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHH
Confidence 45689999999999877 521 1233468899999998762 266654422 22234444444444
Q ss_pred HHHHhcC---------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHHHH
Q psy6404 66 ICYILDD---------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALASL 115 (361)
Q Consensus 66 ~l~lL~~---------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~sL 115 (361)
++-+|.. .......++++||+++||.||||+..... .+.+.-|..+|.+|
T Consensus 494 a~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL 573 (763)
T PLN02993 494 CCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQAL 573 (763)
T ss_pred HHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHH
Confidence 3223321 12245778999999999999999877411 23455688899999
Q ss_pred HHhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc--cc
Q psy6404 116 ALMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT--WI 190 (361)
Q Consensus 116 ~llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~--~~ 190 (361)
.+++.. ...+..++ ...++++++||.+.| ||||.|+++ ...+..|++++.+|...+... ..
T Consensus 574 ~~~~~~~p~~r~~ei-------------~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~ 639 (763)
T PLN02993 574 VLFKQLYPDHRTKEI-------------IKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCL 639 (763)
T ss_pred HHhcccCcchhhhhH-------------HHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcH
Confidence 988752 22111110 235789999999988 999998754 334444666777777666542 24
Q ss_pred cHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhcccc----cchhhHHHHHHHHHHhhc
Q psy6404 191 DEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRPR----IIKTQIESLKRWLIFRQR 250 (361)
Q Consensus 191 ~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~~----~~~~~~~~l~~WL~~rQ~ 250 (361)
.++++++||+++|+.||||+... +..|+...|++|+.+|... .++..+++.++||+++|.
T Consensus 640 ~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~ 715 (763)
T PLN02993 640 AMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQL 715 (763)
T ss_pred HHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccC
Confidence 58999999999999999998642 2458889999999998532 122468899999999997
No 29
>PLN03012 Camelliol C synthase
Probab=99.79 E-value=5.9e-18 Score=176.43 Aligned_cols=253 Identities=12% Similarity=0.009 Sum_probs=165.8
Q ss_pred CCchhHHHHHHHHHHccCCC-CCChhhHHHHHHHHHhccCC---------------CCcccccCC-CCCCchhHHHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPG-VLALVYRLQISTSLRSFTTP---------------CFSFKCTLA-DGDCDMRFVFCACS 65 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~-~l~~~~~~~~~~~L~~~Q~~---------------dG~f~~~~~-~~~~d~~~ty~al~ 65 (361)
.+.+++|..++++|.-- |- +-......+..+||++.|.. .|+|+.... .+.++.-.|--+|.
T Consensus 415 gSqvWDTa~~~qAl~~a-gl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lk 493 (759)
T PLN03012 415 GSQLWDSGFALQALLAS-NLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFK 493 (759)
T ss_pred CCcHHHHHHHHHHHHHc-CCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHH
Confidence 46789999999999766 41 11122367899999998863 255554321 12233333333443
Q ss_pred H---HHHhcC------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHHHH
Q psy6404 66 I---CYILDD------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALASL 115 (361)
Q Consensus 66 ~---l~lL~~------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~sL 115 (361)
+ +.++.. .......++++||+++||+||||+..... .+..--|-.+|.+|
T Consensus 494 a~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL 573 (759)
T PLN03012 494 CCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQAL 573 (759)
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHH
Confidence 2 333321 12245788999999999999999766421 22334488899999
Q ss_pred HHhccccc-cccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH---HHHHHHHhhhh--
Q psy6404 116 ALMNKLDT-LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW---IGASLSILNAA-- 187 (361)
Q Consensus 116 ~llg~~~~-~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~---a~~~L~ll~~~-- 187 (361)
.+++.... .+..++ ...+.++++||++.| ||||.|+++ +||+|+ |+.+|...+..
T Consensus 574 ~~f~~~~~~~r~~~i-------------~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~ 636 (759)
T PLN03012 574 ILFKQLYPDHRTEEI-------------NAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFN 636 (759)
T ss_pred HHHhhhCcccchhhh-------------HHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCC
Confidence 98886422 111110 235788999999988 999999886 566665 55556555542
Q ss_pred ccccHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhcccc----cchhhHHHHHHHHHHhhc-
Q psy6404 188 TWIDEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRPR----IIKTQIESLKRWLIFRQR- 250 (361)
Q Consensus 188 ~~~~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~~----~~~~~~~~l~~WL~~rQ~- 250 (361)
+...++++++||++.|++||||+..- +..|+...|++|+.+|... .++..+++.++||+++|.
T Consensus 637 ~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~ 716 (759)
T PLN03012 637 DCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE 716 (759)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC
Confidence 12457899999999999999999742 2358889999999998532 223468999999999997
Q ss_pred -CC-----CCCCCCC---CCcccccc-hHHHHH
Q psy6404 251 -SG-----FQGRPNK---PVDTCYTF-WIGASL 273 (361)
Q Consensus 251 -gG-----F~GR~nK---~~D~CYsf-W~~a~L 273 (361)
|+ +.|-.|| +...-|.+ |-+-+|
T Consensus 717 dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~AL 749 (759)
T PLN03012 717 NGDFPQQEATGAFLKNCLLHYAAYRNIFPLWAL 749 (759)
T ss_pred CCCCCCceeeeeeccceEEecCccchHHHHHHH
Confidence 44 3555555 34444444 334344
No 30
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.76 E-value=2.3e-18 Score=140.33 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=88.9
Q ss_pred HHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHH--HHHHHHhc--
Q psy6404 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL--KRWLIFRQ-- 157 (361)
Q Consensus 82 i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~--~~~l~~~Q-- 157 (361)
|+||+++|++||||+.. +.++++..|++|+.+|..++... +.+++ ++||.++|
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~----------------------~~~~~~~~~~L~~~q~~ 57 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP----------------------DRDRAAAVEWLLSQQNP 57 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH----------------------CHHHHHHHHHHHHHB-T
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc----------------------cHHHHHHHHHHHHhCCC
Confidence 68999999999999988 78899999999999999998631 35666 99999888
Q ss_pred CCccccCCC-CCCCccchhHHHHHHHHhhhhcc-ccHHHHHHHHHhccCCCCCCCC
Q psy6404 158 RSGFQGRPN-KPVDTCYTFWIGASLSILNAATW-IDEERLLLSVLDTQHMTGGLSK 211 (361)
Q Consensus 158 dGgF~~~~~-~~~D~~~ty~a~~~L~ll~~~~~-~~~~~~~~~I~scQ~~dGGf~~ 211 (361)
||||...+. .++|+..|++++++|.+++.... ..++++++||++||++||||++
T Consensus 58 dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 58 DGGWGSNPDGGPPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp TSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred CCCccCCCCCCCccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 999999884 56899999999999999987653 6688999999999999999974
No 31
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.76 E-value=6.1e-17 Score=168.40 Aligned_cols=233 Identities=13% Similarity=0.011 Sum_probs=156.9
Q ss_pred CCchhHHHHHHHHHHccCCC---CCChhhHHHHHHHHHhccCCC---------------CcccccCC-CCCCchhHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPG---VLALVYRLQISTSLRSFTTPC---------------FSFKCTLA-DGDCDMRFVFCA 63 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~---~l~~~~~~~~~~~L~~~Q~~d---------------G~f~~~~~-~~~~d~~~ty~a 63 (361)
.+.+++|..++++|.-- |. +-......+.++||.+.|..+ |+|+.... .+.+|+..|-.+
T Consensus 293 ~s~vWDTalai~AL~~a-g~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~ 371 (621)
T TIGR01787 293 GSQVWDTAFAIQALRES-GDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVV 371 (621)
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHH
Confidence 46789999999999766 52 112235789999999998765 55543321 122355443333
Q ss_pred HHHHHHhcC----CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHHHh
Q psy6404 64 CSICYILDD----WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLALM 118 (361)
Q Consensus 64 l~~l~lL~~----~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~ll 118 (361)
+..+.++.. ......+++++||+++|++||||+.... ..+....|..+|.+|..+
T Consensus 372 ~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~ 451 (621)
T TIGR01787 372 ALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF 451 (621)
T ss_pred HHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHh
Confidence 322222221 2234577899999999999999985421 112335688899988877
Q ss_pred cccc-ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc--cccHH
Q psy6404 119 NKLD-TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT--WIDEE 193 (361)
Q Consensus 119 g~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~--~~~~~ 193 (361)
+... .+ ...++++++||...| ||+|.++++ ...+..|.+++.+|..++... ...++
T Consensus 452 ~~r~~~~------------------~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~~~~i~ 512 (621)
T TIGR01787 452 GHRADEI------------------RNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRNCPEVQ 512 (621)
T ss_pred cCccHhH------------------HHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccCCHHHH
Confidence 6311 11 236789999999887 999987654 222333445666676666432 14478
Q ss_pred HHHHHHHhccCCCCCCCCCC----------CCCCchhhhhhhhhhcccc--cchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 194 RLLLSVLDTQHMTGGLSKWS----------DTQADILHTYLGEFFVRPR--IIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 194 ~~~~~I~scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~~--~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
++++||+++|+.||||+... ..+|+...|.+||.+|... .....+++.++||.++|. |||.-
T Consensus 513 rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~ 588 (621)
T TIGR01787 513 KACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQ 588 (621)
T ss_pred HHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999998542 2358889999999998632 234468999999999997 66643
No 32
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.74 E-value=8.6e-17 Score=141.62 Aligned_cols=253 Identities=16% Similarity=0.142 Sum_probs=177.7
Q ss_pred ChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhc-CCCCCCCCCCCCCcc
Q psy6404 25 ALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRS-LSYDGAFGQGPCLES 103 (361)
Q Consensus 25 ~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~-q~~dGGF~~~p~~~s 103 (361)
+.++.+++++||..+|+.||||+...+- ...+..||+|+.++.+|+.. ...++++++|+.+. |..
T Consensus 4 ~~i~l~rvi~fi~~RrhedGGy~f~~~L-pdti~~TyYAi~i~s~lg~e-vPr~EktiefL~d~~qt~------------ 69 (274)
T COG1689 4 RYINLNRVIEFIEKRRHEDGGYCFVSQL-PDTINDTYYAIKIYSLLGHE-VPRKEKTIEFLYDQMQTA------------ 69 (274)
T ss_pred hhhhHHHHHHHHHHhhcCCCCeEEeccC-cchhhhhhhhhhhhhhcCCc-CchHHHHHHHHHHHHHHh------------
Confidence 4578999999999999999999876322 22268899999999999864 47799999999882 322
Q ss_pred CchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH-HHHHHH-----Hhc---CCc-cccCCCCCCCccc
Q psy6404 104 HGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES-LKRWLI-----FRQ---RSG-FQGRPNKPVDTCY 173 (361)
Q Consensus 104 h~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~-~~~~l~-----~~Q---dGg-F~~~~~~~~D~~~ 173 (361)
+...+.++-.|.+++..+.. +++ .+.+++ .+- +|| .. -....-.+.
T Consensus 70 -~~~~a~~~~~l~~lg~~d~~---------------------r~~~~l~~~~~~~~e~Kf~~~lggs~~--f~t~~~Le~ 125 (274)
T COG1689 70 -GVGVAMAIEFLRILGAKDLA---------------------RNKMLLLFLKYNPLEEKFAVGLGGSEE--FGTATPLEA 125 (274)
T ss_pred -hhHHHHHHHHHHHhcccccc---------------------hhhHHHHHhhcCchhHHHhhhcCceee--cCCCchHHH
Confidence 22345577888888864321 111 111111 010 333 22 012234788
Q ss_pred hhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHh-hcCC
Q psy6404 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFR-QRSG 252 (361)
Q Consensus 174 ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~r-Q~gG 252 (361)
|||+..+|.+.|. .-.|...++|++-|+.+|++....-.++..-.||.|+-.|...... +...+|=..- .-||
T Consensus 126 ty~~~~~l~~~n~---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~~---~~v~~Fe~~c~~~Gg 199 (274)
T COG1689 126 TYWMMSALNMVNY---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPK---EEVRHFELCCGDWGG 199 (274)
T ss_pred HHHHHHHHHHhCc---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccch---HHHHhHHhccccCCC
Confidence 9999999999874 2356678899999999988877766677888999999888643222 2222222111 1199
Q ss_pred CCCCCCC-CCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC-CCCCChHHHHHHHHHhcc
Q psy6404 253 FQGRPNK-PVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS-DTQADILHTYLEAMSHAS 323 (361)
Q Consensus 253 F~GR~nK-~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p-~~~~D~~hT~~a~~sl~~ 323 (361)
|+--||. ++..-=+|+....|.+|+... -..+..+||.+.|+++|||++.- ...+.+..||.|+.+|..
T Consensus 200 f~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 200 FTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS 270 (274)
T ss_pred cccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence 9999998 444444589999999999862 23578999999999999999875 558999999999887654
No 33
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.70 E-value=2.2e-15 Score=157.71 Aligned_cols=281 Identities=15% Similarity=0.055 Sum_probs=185.4
Q ss_pred hHHHHHHHHHHccCCCCCChhhHHHHHHHHHhcc--CCCCcccccCCCCCCchhHHHHHHHHHHHhcC--CCcccHHHHH
Q psy6404 7 AVLETAVEVLEAVPPGVLALVYRLQISTSLRSFT--TPCFSFKCTLADGDCDMRFVFCACSICYILDD--WSGMDRARCL 82 (361)
Q Consensus 7 ~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q--~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~--~~~~~~~~~i 82 (361)
..+..++.+|..+ |. .+....+++++.+.+.. .++|++.... ..+.++.|-.++.+|.-.+. ......++++
T Consensus 260 ~~~~l~~lal~~~-g~-~~~~~~~~~l~~l~~~~~~~~~g~~~~~~--~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~ 335 (634)
T cd02892 260 PPKANNMLALWVL-GY-PDSPAFKRHLERIDDFLWLGPEGMKMCQT--NGSQVWDTALAVQALLEAGLAPEFDPALKKAL 335 (634)
T ss_pred hHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhcEEEecCCcEEEcC--CCCchHHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 3456677777777 54 45456788888888754 6688765532 23567776666666654442 2234578999
Q ss_pred HHHHhcCC--------------CCCCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhH
Q psy6404 83 EFIFRSLS--------------YDGAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQI 146 (361)
Q Consensus 83 ~~i~~~q~--------------~dGGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~ 146 (361)
+||+++|. +.|||+.. +...+++..|..++.+|..++...... .. .....+
T Consensus 336 ~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~-~~------------~~~~~i 402 (634)
T cd02892 336 DWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFG-EK------------VSRERL 402 (634)
T ss_pred HHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcc-hh------------hHHHHH
Confidence 99999995 34665443 333466778888989888887532100 00 123467
Q ss_pred HHHHHHHHHhc--CCccccC-CC--C------------------CCCccchhHHHHHHHHhhhhcc-------ccHHHHH
Q psy6404 147 ESLKRWLIFRQ--RSGFQGR-PN--K------------------PVDTCYTFWIGASLSILNAATW-------IDEERLL 196 (361)
Q Consensus 147 ~~~~~~l~~~Q--dGgF~~~-~~--~------------------~~D~~~ty~a~~~L~ll~~~~~-------~~~~~~~ 196 (361)
+++++||.++| ||||..- +. + .+..-.|..++.+|.+++.... ..+++++
T Consensus 403 ~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv 482 (634)
T cd02892 403 YDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAV 482 (634)
T ss_pred HHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence 89999999988 9999731 11 0 1223346677777777765422 2478999
Q ss_pred HHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc---c-cchhhHHHHHHHHHHhhc--CCCCCCC----------CCC
Q psy6404 197 LSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP---R-IIKTQIESLKRWLIFRQR--SGFQGRP----------NKP 260 (361)
Q Consensus 197 ~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~---~-~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~ 260 (361)
+||+++|++||||...-+ ....+.|+.++.+|.. . .....+++.++||.++|. |||...+ ...
T Consensus 483 ~~L~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~ 561 (634)
T cd02892 483 KYLLREQEPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGR 561 (634)
T ss_pred HHHHHccCCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCC
Confidence 999999999999954322 2445678878877753 1 234578899999999997 7875321 123
Q ss_pred CcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404 261 VDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS 305 (361)
Q Consensus 261 ~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p 305 (361)
+++..+-|++-+|...+..+....++..+||+++|.++|||....
T Consensus 562 s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~~ 606 (634)
T cd02892 562 STVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQEE 606 (634)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 445666777777766654433334677899999999999997754
No 34
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.66 E-value=2.7e-14 Score=148.91 Aligned_cols=276 Identities=14% Similarity=0.045 Sum_probs=183.8
Q ss_pred HHHHHHHHHHccCCCCCChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHH
Q psy6404 8 VLETAVEVLEAVPPGVLALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFI 85 (361)
Q Consensus 8 ~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i 85 (361)
.+.++|.+|..+ |...+...+.+++++|.+. ...+|++... ...+.++.|-+++.+|...+. .+....+++.+||
T Consensus 269 ~~~~~l~~l~~~-g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~--~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L 345 (635)
T TIGR01507 269 AMFNALIALKIL-GMTQHDAFIKLGWEGIDLYGVELDDSWMFQ--ACVSPVWDTALAVLALREAGLPADHDALVKAGEWL 345 (635)
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHheEecCCceEec--CCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 678889999999 6556666688899999775 4455665433 224678887777777766552 2234578999999
Q ss_pred HhcCC-------------CCCCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHH
Q psy6404 86 FRSLS-------------YDGAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLK 150 (361)
Q Consensus 86 ~~~q~-------------~dGGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~ 150 (361)
+++|- +.||++.. +...+++.-|-.+|.+|..++..+.. .....+++++
T Consensus 346 ~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~----------------~~~~~i~ra~ 409 (635)
T TIGR01507 346 LDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDER----------------RRRDAMTKAF 409 (635)
T ss_pred HhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccc----------------cchHHHHHHH
Confidence 99972 24665554 44568888999999998777421110 1234788999
Q ss_pred HHHHHhc--CCccccCC--C----------C----CCCccc---hhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCCC
Q psy6404 151 RWLIFRQ--RSGFQGRP--N----------K----PVDTCY---TFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGG 208 (361)
Q Consensus 151 ~~l~~~Q--dGgF~~~~--~----------~----~~D~~~---ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dGG 208 (361)
+||..+| ||||..-. + + -.|-.+ |-.++.+|...+.. ....++++++||++.|++|||
T Consensus 410 ~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~ 489 (635)
T TIGR01507 410 RWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGS 489 (635)
T ss_pred HHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCC
Confidence 9999888 99995411 1 0 012222 32333344333321 123468899999999999999
Q ss_pred C-CCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHH
Q psy6404 209 L-SKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGAS 272 (361)
Q Consensus 209 f-~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~ 272 (361)
| +... ....+.|..++.+|.. ......+++.++||.+.|. |||.... ...+|.--+.|++.+
T Consensus 490 W~g~wg--~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~A 567 (635)
T TIGR01507 490 WFGRWG--VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIA 567 (635)
T ss_pred CccCCC--CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHH
Confidence 7 4322 2345567777777742 2234578899999999997 8875321 123555567899999
Q ss_pred HHHhhccCcccHHHHHHHHHhccCCCCCcCCC
Q psy6404 273 LSILNSATWIDEERLLLSVLDTQHMTGGLSKW 304 (361)
Q Consensus 273 L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~ 304 (361)
|...+..+-...++..+||+++|+++||+...
T Consensus 568 L~~ag~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 568 LIAAGRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred HHHhCCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 98877542222357889999999999999775
No 35
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.65 E-value=2.1e-14 Score=149.82 Aligned_cols=281 Identities=13% Similarity=0.044 Sum_probs=181.2
Q ss_pred HHHHHHHHHccCCCCCChhhHHHHHHHHHhcc--CCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHH
Q psy6404 9 LETAVEVLEAVPPGVLALVYRLQISTSLRSFT--TPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLE 83 (361)
Q Consensus 9 t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q--~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~ 83 (361)
+..++..|.++ |.+.+....++++++|.+.. .++|+.... ...+..+.|-.++.+|..-+.. .....+++.+
T Consensus 259 ~~~~~~~l~~~-g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q--~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~ 335 (634)
T TIGR03463 259 VNGVLNMLAWF-AVNPDGPEVAAHLEGLEDYRYEDDDRGLRYN--GYNSSEWDTAFAVQALAATPETAGRHRRMLERAAR 335 (634)
T ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhEEEcCCCCEEEe--eCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHH
Confidence 55678888888 76666667899999999865 556333211 1123345555555544333311 1234688999
Q ss_pred HHHhcCC--------------CCCCCCCCC--CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHH
Q psy6404 84 FIFRSLS--------------YDGAFGQGP--CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIE 147 (361)
Q Consensus 84 ~i~~~q~--------------~dGGF~~~p--~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~ 147 (361)
||+++|. +.||++... ...++...|-.+|.+|..+........+. .+...+.
T Consensus 336 wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~------------~~~~~l~ 403 (634)
T TIGR03463 336 FLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEER------------VPQARLQ 403 (634)
T ss_pred HHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCccccc------------ccHHHHH
Confidence 9999994 458766553 44566677888888776654311100000 1234678
Q ss_pred HHHHHHHHhc--CCccccCC---C---------------CCCCccchhHHHHHHHHhhh---hcc--------ccHHHHH
Q psy6404 148 SLKRWLIFRQ--RSGFQGRP---N---------------KPVDTCYTFWIGASLSILNA---ATW--------IDEERLL 196 (361)
Q Consensus 148 ~~~~~l~~~Q--dGgF~~~~---~---------------~~~D~~~ty~a~~~L~ll~~---~~~--------~~~~~~~ 196 (361)
++++||+++| ||||..-+ . ...|..+..|...++..|.. ... ..+++++
T Consensus 404 ~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav 483 (634)
T TIGR03463 404 DAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGV 483 (634)
T ss_pred HHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHH
Confidence 8999999999 99997321 0 11245565565555444433 221 1267899
Q ss_pred HHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCCC----------CCC
Q psy6404 197 LSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRPN----------KPV 261 (361)
Q Consensus 197 ~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~n----------K~~ 261 (361)
+||++.|++||||...=+ ....+.|++++.+|.. ......+++.++||.+.|. ||+.++.. ..+
T Consensus 484 ~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S 562 (634)
T TIGR03463 484 RFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQS 562 (634)
T ss_pred HHHHHhcCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCC
Confidence 999999999999854322 2234568888888853 2344678999999999987 88866422 234
Q ss_pred cccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404 262 DTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS 305 (361)
Q Consensus 262 D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p 305 (361)
.+.-+.|++.+|...+...-...++..+||++.|.++|||...+
T Consensus 563 ~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 563 QAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred cHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 55567799999988875432334678899999999999998755
No 36
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.62 E-value=1.1e-15 Score=124.39 Aligned_cols=107 Identities=25% Similarity=0.309 Sum_probs=87.5
Q ss_pred HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHH--HHHHHhcCCCCCCCCCCC-CCccCchhhH
Q psy6404 33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC--LEFIFRSLSYDGAFGQGP-CLESHGGSTY 109 (361)
Q Consensus 33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~--i~~i~~~q~~dGGF~~~p-~~~sh~~~Ty 109 (361)
++||+++|++||+|... +..+++..|++++.+|..++.. .+++++ ++||.++|++||||+..+ +.++++..|+
T Consensus 1 v~~L~~~Q~~dGgw~~~--~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~ 76 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF--GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTY 76 (113)
T ss_dssp HHHHHHHB-TTSSBBSS--TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHH
T ss_pred CHhhHHHcCCCCCCcCC--CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHH
Confidence 68999999999999986 4578999999999999998764 358888 999999999999999998 5678899999
Q ss_pred HHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccc
Q psy6404 110 CALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQ 162 (361)
Q Consensus 110 ~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~ 162 (361)
+++.+|.+++..+. .+.++++++||+++| ||||.
T Consensus 77 ~~l~~l~~~~~~~~-------------------~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 77 VALAALELLGRPDD-------------------EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHHT-GGC-------------------HTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHHcCCCcc-------------------cHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999987432 135778999999988 99996
No 37
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.61 E-value=9.3e-15 Score=128.88 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=139.6
Q ss_pred chhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhc-cCCCCccccc----------------------------------
Q psy6404 5 EEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSF-TTPCFSFKCT---------------------------------- 49 (361)
Q Consensus 5 ~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~-Q~~dG~f~~~---------------------------------- 49 (361)
..++||+||.++.+| |.+++. +++.++||+++ |...+++...
T Consensus 34 ti~~TyYAi~i~s~l-g~evPr--~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~ 110 (274)
T COG1689 34 TINDTYYAIKIYSLL-GHEVPR--KEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFAVG 110 (274)
T ss_pred hhhhhhhhhhhhhhc-CCcCch--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHhhh
Confidence 369999999999999 887777 99999999983 5543332110
Q ss_pred C----C-CCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhcccccc
Q psy6404 50 L----A-DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTL 124 (361)
Q Consensus 50 ~----~-~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~ 124 (361)
. . +..+.+..|||...++.+.+. .-.+++-+||++.|+.+|++.+.--.-++...||.|+-.|...+.
T Consensus 111 lggs~~f~t~~~Le~ty~~~~~l~~~n~---~~~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~---- 183 (274)
T COG1689 111 LGGSEEFGTATPLEATYWMMSALNMVNY---EYLEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP---- 183 (274)
T ss_pred cCceeecCCCchHHHHHHHHHHHHHhCc---CchHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc----
Confidence 0 0 122458899999999988873 225678888889999988765543333445566666554443332
Q ss_pred ccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc-CCccccCCCC-CCCccchhHHHHHHHHhhhhccccHHHHHHHHHhc
Q psy6404 125 RPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-RSGFQGRPNK-PVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT 202 (361)
Q Consensus 125 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-dGgF~~~~~~-~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~sc 202 (361)
.+....|-..|- +|||...|++ +.-+.-||.|..+|.+|+.. --+...++||.+-
T Consensus 184 ---------------------~~~v~~Fe~~c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~sl 240 (274)
T COG1689 184 ---------------------KEEVRHFELCCGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSL 240 (274)
T ss_pred ---------------------hHHHHhHHhccccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHh
Confidence 222333433455 8999999876 46778899999999999864 4467789999999
Q ss_pred cCCCCCCCCC-CCCCCchhhhhhhhhhcc
Q psy6404 203 QHMTGGLSKW-SDTQADILHTYLGEFFVR 230 (361)
Q Consensus 203 Q~~dGGf~~~-p~~~s~~~~T~~ala~L~ 230 (361)
||.+|||..+ -.+.|..-.||.||++|.
T Consensus 241 qN~nGGFRRS~~~GISt~e~tYrAl~~L~ 269 (274)
T COG1689 241 QNQNGGFRRSYELGISTFENTYRALASLA 269 (274)
T ss_pred hcCCCCeeeeEeccccchHHHHHHHHHHH
Confidence 9999999875 456677889999999874
No 38
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.61 E-value=1.1e-13 Score=144.07 Aligned_cols=272 Identities=15% Similarity=0.040 Sum_probs=174.4
Q ss_pred HHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC----CCcccHHHHHHHH
Q psy6404 12 AVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDD----WSGMDRARCLEFI 85 (361)
Q Consensus 12 al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~----~~~~~~~~~i~~i 85 (361)
++.+|..+ |.. +....+++++.|++. ..+||.+... ..+.++.|-+++.++..-+. ......+++++||
T Consensus 254 ~~~al~~~-g~~-d~p~~~~~l~~l~~~~~~~~dg~~~q~---~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL 328 (621)
T TIGR01787 254 AMLALWFL-DGP-NSPAFQKHLQRIDDYLWLQLDGMKMQG---TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWL 328 (621)
T ss_pred HHHHHHHc-CCC-CCHHHHHHHHHHhhcEEEeCCccEEec---CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHH
Confidence 66668888 544 555688999999886 5677766433 24667777666666644341 1234578999999
Q ss_pred HhcCCCC---------------CCCCCC--CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHH
Q psy6404 86 FRSLSYD---------------GAFGQG--PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIES 148 (361)
Q Consensus 86 ~~~q~~d---------------GGF~~~--p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~ 148 (361)
+++|..+ ||++.. ..+.+++.-|-.++.++.++...+.. ..+..+++
T Consensus 329 ~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~----------------~~~~~l~~ 392 (621)
T TIGR01787 329 LLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEH----------------VKRDRLRD 392 (621)
T ss_pred HHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCccc----------------ccHHHHHH
Confidence 9999877 554332 22334555566655444443321111 13446788
Q ss_pred HHHHHHHhc--CCccccCC-C---------------CC--CCcc---chhHHHHHHHHhhhh---ccccHHHHHHHHHhc
Q psy6404 149 LKRWLIFRQ--RSGFQGRP-N---------------KP--VDTC---YTFWIGASLSILNAA---TWIDEERLLLSVLDT 202 (361)
Q Consensus 149 ~~~~l~~~Q--dGgF~~~~-~---------------~~--~D~~---~ty~a~~~L~ll~~~---~~~~~~~~~~~I~sc 202 (361)
+++||.+.| ||||..-. . .+ .|.. .|-.++.+|..++.. -...++++++||+++
T Consensus 393 a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~ 472 (621)
T TIGR01787 393 AVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRRE 472 (621)
T ss_pred HHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHh
Confidence 999999988 99997321 1 11 1222 355566666555421 123578999999999
Q ss_pred cCCCCCCCCCCCCCCchhhhhhhhhhccc--cc--chhhHHHHHHHHHHhhc--CCCCCCCC----------CCCccccc
Q psy6404 203 QHMTGGLSKWSDTQADILHTYLGEFFVRP--RI--IKTQIESLKRWLIFRQR--SGFQGRPN----------KPVDTCYT 266 (361)
Q Consensus 203 Q~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~--~~~~~~~l~~WL~~rQ~--gGF~GR~n----------K~~D~CYs 266 (361)
|++||+|...-+. ...+.|.+++.+|.. .. ....+++.++||.+.|. |||..... ..+|+..+
T Consensus 473 Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~T 551 (621)
T TIGR01787 473 QRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQT 551 (621)
T ss_pred cCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHH
Confidence 9999998543221 223346667666642 11 12568899999999986 88754321 24677888
Q ss_pred chHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404 267 FWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS 305 (361)
Q Consensus 267 fW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p 305 (361)
.|++.+|...+...-...++..+||+++|+++|||...+
T Consensus 552 a~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 552 GWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEY 590 (621)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 999998887765332234678899999999999997754
No 39
>PLN03012 Camelliol C synthase
Probab=99.59 E-value=2.4e-14 Score=149.64 Aligned_cols=190 Identities=14% Similarity=0.051 Sum_probs=132.8
Q ss_pred CchhHHHHHHHH---HHccC----CCCCChhhHHHHHHHHHhccCCCCcccccCCCC--------------------CCc
Q psy6404 4 AEEAVLETAVEV---LEAVP----PGVLALVYRLQISTSLRSFTTPCFSFKCTLADG--------------------DCD 56 (361)
Q Consensus 4 ~~~~~t~~al~~---L~~L~----g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~--------------------~~d 56 (361)
+++-+|..+|.+ |.+++ |+.++.....+.++||.++|++||||+...... .+-
T Consensus 483 p~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y 562 (759)
T PLN03012 483 QASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEY 562 (759)
T ss_pred CCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCc
Confidence 456677777765 34331 122333345678999999999999997652110 011
Q ss_pred hhHHHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccch
Q psy6404 57 MRFVFCACSICYILDDWS--------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQ 128 (361)
Q Consensus 57 ~~~ty~al~~l~lL~~~~--------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~ 128 (361)
.-.|-.+|.+|.+++... ....+++++||++.|++||||.+.-+ ......|++||.+|...|....
T Consensus 563 ~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wg-v~y~YgT~~aL~aL~a~g~~~~----- 636 (759)
T PLN03012 563 NECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWG-ICFTYGTWFALAGLAAAGKTFN----- 636 (759)
T ss_pred ccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccc-ccCCcHHHHHHHHHHHhCccCC-----
Confidence 112444556666655321 23477899999999999999987543 3456789999999999886321
Q ss_pred hhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC------------CCCCccchhHHHHHHHHhhhhcc--ccH
Q psy6404 129 ASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN------------KPVDTCYTFWIGASLSILNAATW--IDE 192 (361)
Q Consensus 129 ~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~------------~~~D~~~ty~a~~~L~ll~~~~~--~~~ 192 (361)
....++++++||+++| ||||.++.. +.+....|.||+.+|...+.... ..+
T Consensus 637 -------------~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i 703 (759)
T PLN03012 637 -------------DCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPL 703 (759)
T ss_pred -------------CcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHH
Confidence 1236889999999988 999987532 23556779999999988876432 357
Q ss_pred HHHHHHHHhccCCCCCCCCC
Q psy6404 193 ERLLLSVLDTQHMTGGLSKW 212 (361)
Q Consensus 193 ~~~~~~I~scQ~~dGGf~~~ 212 (361)
+++++||++.|.+||+|-+.
T Consensus 704 ~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 704 HRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred HHHHHHHHHcccCCCCCCCc
Confidence 99999999999999999753
No 40
>PLN02993 lupeol synthase
Probab=99.57 E-value=7e-14 Score=146.46 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=131.1
Q ss_pred CchhHHHHHHHHHHcc---CC----CCCChhhHHHHHHHHHhccCCCCcccccCCCC-----------------CCchhH
Q psy6404 4 AEEAVLETAVEVLEAV---PP----GVLALVYRLQISTSLRSFTTPCFSFKCTLADG-----------------DCDMRF 59 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L---~g----~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~-----------------~~d~~~ 59 (361)
+++-+|..+|.++-+| +. +.++.....+.++||.++|+.||||+...... --|...
T Consensus 483 p~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~ 562 (763)
T PLN02993 483 QVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREY 562 (763)
T ss_pred CcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCC
Confidence 4566788887754333 11 22233345678999999999999998753111 012223
Q ss_pred ---HHHHHHHHHHhcCCC--------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccch
Q psy6404 60 ---VFCACSICYILDDWS--------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQ 128 (361)
Q Consensus 60 ---ty~al~~l~lL~~~~--------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~ 128 (361)
|-.++.+|.+++... ....+++++||++.|++||||.+. .+......|++||.+|...|....
T Consensus 563 ~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~----- 636 (763)
T PLN02993 563 VECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYN----- 636 (763)
T ss_pred cCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCC-----
Confidence 334455555554211 134688999999999999999763 555677889999999998887322
Q ss_pred hhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC------------CCCCccchhHHHHHHHHhhhhcc--ccH
Q psy6404 129 ASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN------------KPVDTCYTFWIGASLSILNAATW--IDE 192 (361)
Q Consensus 129 ~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~------------~~~D~~~ty~a~~~L~ll~~~~~--~~~ 192 (361)
..+.++++++||+++| ||||..+.. +.+....|.||+.+|...|.... ..+
T Consensus 637 -------------~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l 703 (763)
T PLN02993 637 -------------DCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPL 703 (763)
T ss_pred -------------CcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHH
Confidence 1246899999999988 999976421 23455678899999988875322 347
Q ss_pred HHHHHHHHhccCCCCCCCC
Q psy6404 193 ERLLLSVLDTQHMTGGLSK 211 (361)
Q Consensus 193 ~~~~~~I~scQ~~dGGf~~ 211 (361)
+++++||++.|..+|+|-+
T Consensus 704 ~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 704 HRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred HHHHHHHHhccCCCCCCCC
Confidence 8999999999999999854
No 41
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.41 E-value=8.6e-12 Score=119.22 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=131.4
Q ss_pred HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCCC-------
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQGP------- 99 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~p------- 99 (361)
++.++.+.+.|++||+|+.. .+...+++.|-+++..|..... .+....+++++||.+.|++||+|...-
T Consensus 55 ~~g~~r~l~~q~~dGsf~~w-~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 55 RQGYQRQLSYRKPDGSYAAW-KNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHhccCCCCCccCC-CCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 34455666789999999766 3446788888888888876653 233457889999999999999997642
Q ss_pred -C----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccch
Q psy6404 100 -C----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYT 174 (361)
Q Consensus 100 -~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~t 174 (361)
+ .++++..|-+++.+|.-.+........ -....++++++||...++. +...
T Consensus 134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~-------------~~~~~i~rA~~yL~~~~~~-----------~~~~ 189 (297)
T cd02896 134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQ-------------NLDQSIRKAISYLENQLPN-----------LQRP 189 (297)
T ss_pred cCCccccCCCccchHHHHHHHHhhhccccccch-------------hhHHHHHHHHHHHHHhccc-----------CCCh
Confidence 1 124666777777777666542110000 0123678899999976532 2233
Q ss_pred hH---HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCC--------CC-C--CCchhhhhhhhhhcccccchhhHHH
Q psy6404 175 FW---IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKW--------SD-T--QADILHTYLGEFFVRPRIIKTQIES 240 (361)
Q Consensus 175 y~---a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~--------p~-~--~s~~~~T~~ala~L~~~~~~~~~~~ 240 (361)
|- +.-+|.+.+. ...+++.++|++.|+.|||++.. ++ . ..+.-.|.+||.++..........+
T Consensus 190 Y~~Al~ayALal~~~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~~~~a~~ 266 (297)
T cd02896 190 YALAITAYALALADS---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGDIEYANP 266 (297)
T ss_pred HHHHHHHHHHHHcCC---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCCchhHHH
Confidence 32 3334444442 35678999999999999998742 11 1 1256688999888754333446778
Q ss_pred HHHHHHHhhc--CCCCC
Q psy6404 241 LKRWLIFRQR--SGFQG 255 (361)
Q Consensus 241 l~~WL~~rQ~--gGF~G 255 (361)
.++||.++|. |||..
T Consensus 267 iv~WL~~qr~~~Ggf~s 283 (297)
T cd02896 267 IARWLTEQRNYGGGFGS 283 (297)
T ss_pred HHHHHHhcCCCCCCeeh
Confidence 9999998776 77764
No 42
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.36 E-value=8.4e-11 Score=112.05 Aligned_cols=202 Identities=12% Similarity=0.043 Sum_probs=128.0
Q ss_pred CChhhHHHHHHHHH-------hccCCCCcccccCCC-CCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCC
Q psy6404 24 LALVYRLQISTSLR-------SFTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYD 92 (361)
Q Consensus 24 l~~~~~~~~~~~L~-------~~Q~~dG~f~~~~~~-~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~d 92 (361)
++...+++.++||+ +.|++||+|+..... ..++++.|.+++..|..... ......+++++||.+.|++|
T Consensus 39 ~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~d 118 (292)
T cd02897 39 LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSN 118 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCC
Confidence 44444677777776 489999999765222 25688888888887776553 22345788999999999999
Q ss_pred CCCCCCC---------CCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCcccc
Q psy6404 93 GAFGQGP---------CLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQG 163 (361)
Q Consensus 93 GGF~~~p---------~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~ 163 (361)
|||+... +..+++..|-.++.+|...+..+ . .+.++++++||...++.
T Consensus 119 G~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~-~------------------~~~i~~a~~yL~~~~~~---- 175 (292)
T cd02897 119 GCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS-E------------------RPVVEKALSCLEAALDS---- 175 (292)
T ss_pred CCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc-c------------------cHHHHHHHHHHHHhccc----
Confidence 9998531 12344667888888887777521 1 23578899999875521
Q ss_pred CCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHh---ccCCCCCCCCCC----------C-CCCchhhhhhhhhhc
Q psy6404 164 RPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLD---TQHMTGGLSKWS----------D-TQADILHTYLGEFFV 229 (361)
Q Consensus 164 ~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~s---cQ~~dGGf~~~p----------~-~~s~~~~T~~ala~L 229 (361)
..++..+..+..+|.+.+. ...+++.+.+.. .++.+|+|+..| . ..++.-.|.++|.+|
T Consensus 176 ----~~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlal 248 (292)
T cd02897 176 ----ISDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLAL 248 (292)
T ss_pred ----CCCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHH
Confidence 1223333345556666552 234455555443 455566666421 1 224667788998887
Q ss_pred cccc--chhhHHHHHHHHHHhhc--CCCCC
Q psy6404 230 RPRI--IKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 230 ~~~~--~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
.... ......+.++||.+.|. |||..
T Consensus 249 l~~~~~~~~~~~~~v~WL~~~q~~~Ggf~s 278 (292)
T cd02897 249 LSAGGEDLAEALPIVKWLAKQRNSLGGFSS 278 (292)
T ss_pred HHcCCccHhHHHHHHHHHHHcCCCCCCccc
Confidence 5322 23456778889998775 56643
No 43
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.22 E-value=1.5e-09 Score=103.44 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=124.6
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHH-------hcCCCCCCCCCCCCC--ccCchhhHHHHHHHHHhccccccccchhhhh
Q psy6404 62 CACSICYILDDWSGMDRARCLEFIF-------RSLSYDGAFGQGPCL--ESHGGSTYCALASLALMNKLDTLRPTQASLY 132 (361)
Q Consensus 62 ~al~~l~lL~~~~~~~~~~~i~~i~-------~~q~~dGGF~~~p~~--~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~ 132 (361)
.++.-+...+.++...++++++||. ++|++||||+..+.. .++...|.+++.+|........
T Consensus 28 ~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~--------- 98 (292)
T cd02897 28 YVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIY--------- 98 (292)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCC---------
Confidence 3333333333344444555555555 699999999876543 6778889999888877664212
Q ss_pred HhhhhhhcCChHhHHHHHHHHHHhc--CCccccCC---------CCCCCccchhHHHHHHHHhhhhc-cccHHHHHHHHH
Q psy6404 133 LDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRP---------NKPVDTCYTFWIGASLSILNAAT-WIDEERLLLSVL 200 (361)
Q Consensus 133 l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~---------~~~~D~~~ty~a~~~L~ll~~~~-~~~~~~~~~~I~ 200 (361)
.+...++++++||.++| ||||.... +.+.+...|-+++.+|...+... ...++++++||.
T Consensus 99 --------v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~ 170 (292)
T cd02897 99 --------IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLE 170 (292)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence 23457899999999887 99997421 11122334556666666555421 234689999999
Q ss_pred hccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhc----CCCCCCC-----------C-CCCccc
Q psy6404 201 DTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR----SGFQGRP-----------N-KPVDTC 264 (361)
Q Consensus 201 scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~----gGF~GR~-----------n-K~~D~C 264 (361)
+.+.. ..+...+..+..+|.... ....++++++|.+.+. .|+-+.. + ...|+-
T Consensus 171 ~~~~~----------~~~~y~~al~a~AL~~~~-~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve 239 (292)
T cd02897 171 AALDS----------ISDPYTLALAAYALTLAG-SEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVE 239 (292)
T ss_pred Hhccc----------CCCHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHH
Confidence 98764 123334443333442211 1234566666665432 1221111 0 011111
Q ss_pred ccchHHHHHHHhhcc--CcccHHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 265 YTFWIGASLSILNSA--TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 265 YsfW~~a~L~~L~~~--~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
=+=|++ |.++... ......+..+||.++|+..|||+.. --|..|+.+|.
T Consensus 240 ~TAyaL--lall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sT-------Qdt~~al~AL~ 290 (292)
T cd02897 240 MTAYAL--LALLSAGGEDLAEALPIVKWLAKQRNSLGGFSST-------QDTVVALQALA 290 (292)
T ss_pred HHHHHH--HHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccH-------HHHHHHHHHHH
Confidence 111222 2333332 2222245677999999999999875 35666665553
No 44
>KOG0497|consensus
Probab=99.22 E-value=2.5e-10 Score=115.97 Aligned_cols=226 Identities=16% Similarity=0.095 Sum_probs=152.3
Q ss_pred CchhHHHHHHHHHHccCCCCCChh--hHHHHHHHHHhccC---CCCcc------------cccCCCCC---CchhHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALV--YRLQISTSLRSFTT---PCFSF------------KCTLADGD---CDMRFVFCA 63 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~--~~~~~~~~L~~~Q~---~dG~f------------~~~~~~~~---~d~~~ty~a 63 (361)
.-+|+|.+||+.|..- +.+ +.. ...+..+||++-|. |.|.+ ..+...+. +| .|-=+
T Consensus 415 sQ~Wdt~falqalla~-~~~-~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD--ctaEa 490 (760)
T KOG0497|consen 415 SQLWDTAFALQALLAA-GLV-DEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD--CTAEA 490 (760)
T ss_pred hhHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc--ccHHH
Confidence 3478999999998877 433 222 35678999999774 33322 21110000 12 12223
Q ss_pred HHHHHHhcC---------CCcccHHHHHHHHHhcCCCCCCCCCCCCC---------------------ccCchhhHHHHH
Q psy6404 64 CSICYILDD---------WSGMDRARCLEFIFRSLSYDGAFGQGPCL---------------------ESHGGSTYCALA 113 (361)
Q Consensus 64 l~~l~lL~~---------~~~~~~~~~i~~i~~~q~~dGGF~~~p~~---------------------~sh~~~Ty~Al~ 113 (361)
+..+-+++. .+.+..-++++.|+++|+.+|||....-. +..+--|.++|+
T Consensus 491 l~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~ 570 (760)
T KOG0497|consen 491 LKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQ 570 (760)
T ss_pred HHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHH
Confidence 344444431 23345566888999999999999765210 123456899999
Q ss_pred HHHHhcccc-ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH---HHHHHHHhhhh
Q psy6404 114 SLALMNKLD-TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW---IGASLSILNAA 187 (361)
Q Consensus 114 sL~llg~~~-~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~---a~~~L~ll~~~ 187 (361)
+|....+.. ..|+.++ +..+++++.||.+.| ||+|.|+++ +|+||- ++.+|...|+.
T Consensus 571 aL~~F~k~~p~~r~~Ei-------------~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkt 633 (760)
T KOG0497|consen 571 ALVYFHKLFPGHRKKEI-------------EKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKT 633 (760)
T ss_pred HHHhhcccCccHHHHHH-------------HHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchh
Confidence 999888742 2333222 235678999999888 999999987 899885 55555555543
Q ss_pred --ccccHHHHHHHHHhccCCCCCCCCCC------------CCCCchhhhhhhhhhccc----ccchhhHHHHHHHHHHhh
Q psy6404 188 --TWIDEERLLLSVLDTQHMTGGLSKWS------------DTQADILHTYLGEFFVRP----RIIKTQIESLKRWLIFRQ 249 (361)
Q Consensus 188 --~~~~~~~~~~~I~scQ~~dGGf~~~p------------~~~s~~~~T~~ala~L~~----~~~~~~~~~l~~WL~~rQ 249 (361)
....++++++||++-|+.|||||..+ +..++...|..|+.+|.. .-++..++++++.|.+.|
T Consensus 634 y~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ 713 (760)
T KOG0497|consen 634 YENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQ 713 (760)
T ss_pred hhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcc
Confidence 23557899999999999999999764 335788899999999853 233446889999999998
Q ss_pred c
Q psy6404 250 R 250 (361)
Q Consensus 250 ~ 250 (361)
.
T Consensus 714 ~ 714 (760)
T KOG0497|consen 714 L 714 (760)
T ss_pred c
Confidence 7
No 45
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.16 E-value=1.5e-09 Score=103.83 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ 157 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q 157 (361)
.++.++.++++|++||||+..+...++...|.+++.+|........+ +...+++.++||..+|
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v-----------------~~~~l~~a~~wL~~~Q 116 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPV-----------------DQNVICGSVNWLISNQ 116 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHhcC
Confidence 56677888999999999998877778888888999998877653222 3346789999999888
Q ss_pred --CCccccCC--------CC----CCCccchhHHHHHHHHhhhhc-------cccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404 158 --RSGFQGRP--------NK----PVDTCYTFWIGASLSILNAAT-------WIDEERLLLSVLDTQHMTGGLSKWSDTQ 216 (361)
Q Consensus 158 --dGgF~~~~--------~~----~~D~~~ty~a~~~L~ll~~~~-------~~~~~~~~~~I~scQ~~dGGf~~~p~~~ 216 (361)
||+|.... ++ +.++..|-+++.+|.-.+... ...++++++||.++|..- ...
T Consensus 117 ~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~------~~~- 189 (297)
T cd02896 117 KPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNL------QRP- 189 (297)
T ss_pred CCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccC------CCh-
Confidence 99998542 01 234555656666665544321 124688999999988641 000
Q ss_pred CchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCC-----------CCcccccchHHHHHHHhhccCccc
Q psy6404 217 ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNK-----------PVDTCYTFWIGASLSILNSATWID 283 (361)
Q Consensus 217 s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK-----------~~D~CYsfW~~a~L~~L~~~~~~~ 283 (361)
-....+.+|++... .....+..+||.++|. +|......+ ..++-=+=| +-|.++.......
T Consensus 190 Y~~Al~ayALal~~----~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAY--ALLall~~~~~~~ 263 (297)
T cd02896 190 YALAITAYALALAD----SPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAY--ALLALLKLGDIEY 263 (297)
T ss_pred HHHHHHHHHHHHcC----ChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHH--HHHHHHhcCCchh
Confidence 01122223332221 1256788999998875 444332211 111111112 2233444333334
Q ss_pred HHHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHh
Q psy6404 284 EERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSH 321 (361)
Q Consensus 284 ~~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl 321 (361)
...+.+||.+.|+..|||+.. --|..|+-+|
T Consensus 264 a~~iv~WL~~qr~~~Ggf~sT-------QdTvval~AL 294 (297)
T cd02896 264 ANPIARWLTEQRNYGGGFGST-------QDTVVALQAL 294 (297)
T ss_pred HHHHHHHHHhcCCCCCCeehH-------HHHHHHHHHH
Confidence 467899999999999999874 3466665444
No 46
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.15 E-value=4.8e-11 Score=81.01 Aligned_cols=44 Identities=39% Similarity=0.662 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhc
Q psy6404 76 MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMN 119 (361)
Q Consensus 76 ~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg 119 (361)
++++++++||++||++||||+..|+.++|+.+||+|+++|.++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999986
No 47
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.07 E-value=1.2e-10 Score=79.09 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404 190 IDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVR 230 (361)
Q Consensus 190 ~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~ 230 (361)
+|++++++||++||++||||+..|+.++|..+||||+++|.
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~ 41 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALS 41 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999985
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.95 E-value=6.2e-10 Score=90.07 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=36.1
Q ss_pred HHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhh
Q psy6404 147 ESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY 223 (361)
Q Consensus 147 ~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~ 223 (361)
+++++||...| ||||.+... .|...|++++.+|..++.. ....++++++||+++|++||||+..+.. +...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~--~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGE--YVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCC--CHHHHH
Confidence 56789999877 999986633 5678888988888888753 2345799999999999999999988433 344555
Q ss_pred hhhhhccc---ccchhhHHHHHHHHHHhhc
Q psy6404 224 LGEFFVRP---RIIKTQIESLKRWLIFRQR 250 (361)
Q Consensus 224 ~ala~L~~---~~~~~~~~~l~~WL~~rQ~ 250 (361)
.++.+|.. ......+++.++||..+|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 55555432 2245678999999998863
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.90 E-value=2.1e-09 Score=86.90 Aligned_cols=104 Identities=17% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhh
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGST 108 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~T 108 (361)
+++++||.+.|++||+|.... +.+...+++++..+..++. ......+++++||+++|++||||+..+. .+...|
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~---~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t 76 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW---GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT 76 (109)
T ss_dssp ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred ccccccccccccccccccccc---cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence 578999999999999997652 2456677777777777663 2345679999999999999999997733 234566
Q ss_pred HHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404 109 YCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ 157 (361)
Q Consensus 109 y~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q 157 (361)
..++.+|.+.+... ..+.+++.++||.+.|
T Consensus 77 ~~~~~~l~~~~~~~-------------------~~~~~~r~~~wi~~~~ 106 (109)
T PF13243_consen 77 AAAIAALALAGVYP-------------------DDEAVERGLEWILSHQ 106 (109)
T ss_dssp HHHHHHHHHHHTT---------------------HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCC-------------------CCHHHHHHHHHHHHcc
Confidence 66677775554421 1246789999998765
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.83 E-value=2.5e-07 Score=87.26 Aligned_cols=189 Identities=14% Similarity=0.062 Sum_probs=112.8
Q ss_pred HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCCCC-----
Q psy6404 29 RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQGPC----- 100 (361)
Q Consensus 29 ~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~p~----- 100 (361)
.++.+++|.++|++||||+.......++++.|.+++..|..... ....-.+++++||.+.|++||+|.....
T Consensus 51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~ 130 (282)
T cd02891 51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE 130 (282)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence 45678999999999999987643336788888888888876543 2223488899999999999999976432
Q ss_pred ----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH
Q psy6404 101 ----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW 176 (361)
Q Consensus 101 ----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~ 176 (361)
..+....|.+++.+|...+... ...+.++++||....+. ..+.-....
T Consensus 131 ~~~~~~~~~~~tA~al~~L~~~g~~~--------------------~~~~~~a~~~L~~~~~~--------~~~~~~~a~ 182 (282)
T cd02891 131 MKGGVDDSVSLTAYVLIALAEAGKAC--------------------DASIEKALAYLETQLDG--------LLDPYALAI 182 (282)
T ss_pred hcCCcCCCcchHHHHHHHHHHhcccc--------------------hHHHHHHHHHHHHhccc--------CCChHHHHH
Confidence 1234456777877777766521 12567888998865421 112222223
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCC-------CCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHH
Q psy6404 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK-------WSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIF 247 (361)
Q Consensus 177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~-------~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~ 247 (361)
+..+|.+++. ....+++.+-|.......++... ..+.....-.|..++.+..........+++++||.+
T Consensus 183 la~al~~~g~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~~~~~~~~~~~~~~~~~L~~ 258 (282)
T cd02891 183 LAYALALAGD--STRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLALLKLGDLEEAGPIAKWLAQ 258 (282)
T ss_pred HHHHHHHcCc--cHHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 4455555553 12234455555554433332211 111112223444444443221133467789999998
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.72 E-value=2e-07 Score=86.84 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=119.4
Q ss_pred HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC---cccHHHHHHHHHhcCCCCCCCCCCCCC--------
Q psy6404 33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS---GMDRARCLEFIFRSLSYDGAFGQGPCL-------- 101 (361)
Q Consensus 33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~---~~~~~~~i~~i~~~q~~dGGF~~~p~~-------- 101 (361)
.+-+.+.|++||||..+..+..+.++.|-+.+..+....... ....+++++||.+.|++||.|......
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~ 82 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG 82 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence 344567789999999872234688999999998888776542 334788999999999999999653211
Q ss_pred -ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH-HHH
Q psy6404 102 -ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW-IGA 179 (361)
Q Consensus 102 -~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~-a~~ 179 (361)
...+..|-+.+.+|.-.+..... ... .....++++++||.... ....-.|- |+.
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~---~~~----------~~~~~i~kA~~~L~~~~-----------~~~~~~Y~lAl~ 138 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDS---EKP----------EYENAINKALNYLERHL-----------DNIQDPYTLALV 138 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTT---THH----------CHHHHHHHHHHHHHHHH-----------GCTSSHHHHHHH
T ss_pred CCCCeeehHHHHHHHHhhhhhccc---cch----------hhHHHHHHHHHHHHHhc-----------cccCCHHHHHHH
Confidence 11233444444444333321000 000 01246788999997531 11223342 333
Q ss_pred H--HHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC--------------CchhhhhhhhhhcccccchhhHHHHHH
Q psy6404 180 S--LSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ--------------ADILHTYLGEFFVRPRIIKTQIESLKR 243 (361)
Q Consensus 180 ~--L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~--------------s~~~~T~~ala~L~~~~~~~~~~~l~~ 243 (361)
+ |.+.+ +....+.+.+-|.+....+||....+... .+.-.|.+||.++...........+++
T Consensus 139 aYAL~la~--~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~~~~~iv~ 216 (246)
T PF07678_consen 139 AYALALAG--DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLEEASPIVR 216 (246)
T ss_dssp HHHHHHTT--TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhhc--ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3 33333 34566778889999888887775433222 134567888877654444557788999
Q ss_pred HHHHhhc--CCCCC
Q psy6404 244 WLIFRQR--SGFQG 255 (361)
Q Consensus 244 WL~~rQ~--gGF~G 255 (361)
||.++|. |||..
T Consensus 217 WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 217 WLISQRNSGGGFGS 230 (246)
T ss_dssp HHHHCTTTTSSTSS
T ss_pred HHHHhcCCCCccCc
Confidence 9998764 78765
No 52
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.71 E-value=1.5e-06 Score=81.82 Aligned_cols=112 Identities=13% Similarity=0.035 Sum_probs=81.5
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCC-ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH
Q psy6404 77 DRARCLEFIFRSLSYDGAFGQGPCL-ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF 155 (361)
Q Consensus 77 ~~~~~i~~i~~~q~~dGGF~~~p~~-~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~ 155 (361)
..++.+++|.++|++||||+..++. .++...|.+++..|...+....+ ....++++++||..
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v-----------------~~~~i~ra~~~L~~ 112 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDV-----------------DENVLARALGWLVP 112 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCC-----------------CHHHHHHHHHHHHh
Confidence 3677999999999999999999877 78899999998888776553221 23457899999998
Q ss_pred hc--CCccccCCC---------CCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC
Q psy6404 156 RQ--RSGFQGRPN---------KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM 205 (361)
Q Consensus 156 ~Q--dGgF~~~~~---------~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~ 205 (361)
.| +|+|..... ...+...|-+++.+|...+.......+++++||.+....
T Consensus 113 ~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~ 173 (282)
T cd02891 113 QQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG 173 (282)
T ss_pred ccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc
Confidence 87 898876432 123344566666666655543334578899999987753
No 53
>KOG0497|consensus
Probab=98.26 E-value=1.1e-05 Score=82.84 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=116.3
Q ss_pred ChhhHHHH---HHHHHhccCCCCcccccCC---------------CC-----CCchhHHHHHHHHHHHhcCC-C------
Q psy6404 25 ALVYRLQI---STSLRSFTTPCFSFKCTLA---------------DG-----DCDMRFVFCACSICYILDDW-S------ 74 (361)
Q Consensus 25 ~~~~~~~~---~~~L~~~Q~~dG~f~~~~~---------------~~-----~~d~~~ty~al~~l~lL~~~-~------ 74 (361)
..++.+++ ++.|..+|..+|+|...-+ .+ ++-+..|-.++.+|...+.. .
T Consensus 507 ~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E 586 (760)
T KOG0497|consen 507 EKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKE 586 (760)
T ss_pred CCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHH
Confidence 34566665 5557789999998865311 00 12233344455555444321 1
Q ss_pred -cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHH
Q psy6404 75 -GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWL 153 (361)
Q Consensus 75 -~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l 153 (361)
.....++++||.+.|.+||++-++-+- --...|++|+..|...|+--. .-..+++++.|+
T Consensus 587 i~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~------------------nc~~irka~~Fl 647 (760)
T KOG0497|consen 587 IEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYE------------------NCEAIRKACDFL 647 (760)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhh------------------ccHHHHHHHHHH
Confidence 123667899999999999988665331 234578889999988887211 123678999999
Q ss_pred HHhc--CCccccCC------------CCCCCccchhHHHHHHHHhhhhcc--ccHHHHHHHHHhccCCCCCCCCC
Q psy6404 154 IFRQ--RSGFQGRP------------NKPVDTCYTFWIGASLSILNAATW--IDEERLLLSVLDTQHMTGGLSKW 212 (361)
Q Consensus 154 ~~~Q--dGgF~~~~------------~~~~D~~~ty~a~~~L~ll~~~~~--~~~~~~~~~I~scQ~~dGGf~~~ 212 (361)
.+.| +|||..+. +..+.+-.|.||+.+|-+.+..+. ....+++..|.+.|-.+|-|.+.
T Consensus 648 l~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq 722 (760)
T KOG0497|consen 648 LSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ 722 (760)
T ss_pred HhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence 9988 99997542 123566779999999999987643 36789999999999999998764
No 54
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.18 E-value=3.3e-05 Score=71.88 Aligned_cols=207 Identities=13% Similarity=0.023 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCCCCCCCC-CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--
Q psy6404 81 CLEFIFRSLSYDGAFGQG-PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-- 157 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~-p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-- 157 (361)
..+-+++.|++||||+.+ ...+++...|-+++..|....+.-. ++...+.++++||..+|
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~-----------------vd~~~i~~a~~wL~~~Q~~ 64 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIF-----------------VDENVICRAVKWLISQQQP 64 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS------------------CEHHHHHHHHHHHHHHBET
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhc-----------------CCHHHHHHHHHHHHHhhcC
Confidence 345678899999999999 6677888999999998887766422 24457899999999888
Q ss_pred CCccccCCC---C------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhh
Q psy6404 158 RSGFQGRPN---K------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH 221 (361)
Q Consensus 158 dGgF~~~~~---~------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~ 221 (361)
||+|..... . +.++..|-.++.+|.-.+.. ....++++++||.+.... .... -....
T Consensus 65 dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~------~~~~-Y~lAl 137 (246)
T PF07678_consen 65 DGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN------IQDP-YTLAL 137 (246)
T ss_dssp TSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC------TSSH-HHHHH
T ss_pred CCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc------cCCH-HHHHH
Confidence 999975321 1 11222232233333222211 123467899999876211 0000 01111
Q ss_pred hhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCCC---Cccccc-ch--------HHHHHHHhhccCcccHHHH
Q psy6404 222 TYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNKP---VDTCYT-FW--------IGASLSILNSATWIDEERL 287 (361)
Q Consensus 222 T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK~---~D~CYs-fW--------~~a~L~~L~~~~~~~~~~~ 287 (361)
+.+|++... +......+..-|.++.. +|...-.... ...-+. ++ .++-|.++......+...+
T Consensus 138 ~aYAL~la~---~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~~~~~~~~i 214 (246)
T PF07678_consen 138 VAYALALAG---DSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRGDLEEASPI 214 (246)
T ss_dssp HHHHHHHTT---TCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhc---ccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 222322221 33455666777766543 4432211111 110000 11 1223444444332333578
Q ss_pred HHHHHhccCCCCCcCCCCCCCCChHHHHHHHHHh
Q psy6404 288 LLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSH 321 (361)
Q Consensus 288 ~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl 321 (361)
.+||.+.|+..|||+.. --|..|+-+|
T Consensus 215 v~WL~~qr~~~Ggf~ST-------QdTvvaL~AL 241 (246)
T PF07678_consen 215 VRWLISQRNSGGGFGST-------QDTVVALQAL 241 (246)
T ss_dssp HHHHHHCTTTTSSTSSH-------HHHHHHHHHH
T ss_pred HHHHHHhcCCCCccCcH-------HHHHHHHHHH
Confidence 89999888899999874 3456665444
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.77 E-value=4.8e-05 Score=76.90 Aligned_cols=190 Identities=17% Similarity=0.118 Sum_probs=111.5
Q ss_pred ccCCCCcccccCCC-CCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCch-----------
Q psy6404 39 FTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGG----------- 106 (361)
Q Consensus 39 ~Q~~dG~f~~~~~~-~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~----------- 106 (361)
.+...|+|...... ..+|... ++-.+..+....+..+-++.++||..+|+..|||...+....|..
T Consensus 245 ~~~~~g~W~f~~~~~~ypd~d~--T~~~~~al~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~ 322 (517)
T COG1657 245 RKFSPGGWGFSNINTGYPDADD--TAGVVRALIGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKA 322 (517)
T ss_pred cccCCCccceeecccCCCCchh--hhHHHHHHHhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccc
Confidence 34446777654322 1233322 222333333444456677799999999999999987753222211
Q ss_pred --------hhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404 107 --------STYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW 176 (361)
Q Consensus 107 --------~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~ 176 (361)
-|...+..|..++...+- -....+++++.||++.| +|.|.++++ .|++|-
T Consensus 323 ~~~~s~adct~~~~~~l~a~~~yl~~----------------~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~ 382 (517)
T COG1657 323 MVDPSTADCTHRVVLALAALNAYLEA----------------YDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYG 382 (517)
T ss_pred cccCCcccCCCccHHHHhhhhhcccc----------------ccCCcccHHHhhhhhhccccCceeeEEE----EEEEEe
Confidence 111122222222221110 00235788999999887 999988876 788887
Q ss_pred HHHHHHHhhhhccc-----cHHHHHHHHHhccCCCCCCCCCCCCCCch----------hhhhhhhhhccc--ccchhhHH
Q psy6404 177 IGASLSILNAATWI-----DEERLLLSVLDTQHMTGGLSKWSDTQADI----------LHTYLGEFFVRP--RIIKTQIE 239 (361)
Q Consensus 177 a~~~L~ll~~~~~~-----~~~~~~~~I~scQ~~dGGf~~~p~~~s~~----------~~T~~ala~L~~--~~~~~~~~ 239 (361)
...++..+...... -+.+++.|+.+||+++|||+..-...++. ..|..|+..+.. ......++
T Consensus 383 ~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~ 462 (517)
T COG1657 383 TSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIK 462 (517)
T ss_pred hhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhc
Confidence 77766666544333 35789999999999999999753322222 234445444432 12333467
Q ss_pred HHHHHHHHhhc
Q psy6404 240 SLKRWLIFRQR 250 (361)
Q Consensus 240 ~l~~WL~~rQ~ 250 (361)
..++.+.++|.
T Consensus 463 ~~~~~~~~~~~ 473 (517)
T COG1657 463 PGINLLVSDQE 473 (517)
T ss_pred ccccccccCcC
Confidence 77888888876
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.49 E-value=0.00034 Score=70.81 Aligned_cols=187 Identities=16% Similarity=0.089 Sum_probs=114.7
Q ss_pred chhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCC------------------CchhHHHHHHHH
Q psy6404 5 EEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGD------------------CDMRFVFCACSI 66 (361)
Q Consensus 5 ~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~------------------~d~~~ty~al~~ 66 (361)
+...|..++..+... ..++. -+..++||..+|+..|+|....+... +-...+-..+..
T Consensus 263 d~d~T~~~~~al~~~--~~~~~--~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~ 338 (517)
T COG1657 263 DADDTAGVVRALIGV--QSLPN--FELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLA 338 (517)
T ss_pred CchhhhHHHHHHHhh--cchhh--HHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHH
Confidence 445566666666666 43443 45599999999999998877532100 000111111122
Q ss_pred HHHhcCC-C---cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCC
Q psy6404 67 CYILDDW-S---GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142 (361)
Q Consensus 67 l~lL~~~-~---~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~ 142 (361)
+..++.+ + ....+++++|+++.|.++|.+-+. .+.--+..|..++.++...+..+..
T Consensus 339 l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~-w~v~~iY~~s~a~~~l~~~g~~~~~------------------ 399 (517)
T COG1657 339 LAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGR-WGVCYIYGTSGALSALALVGETDEN------------------ 399 (517)
T ss_pred HhhhhhccccccCCcccHHHhhhhhhccccCceeeE-EEEEEEEehhhhhhhhhccCccccc------------------
Confidence 2222221 1 345889999999999999975442 2222356677788888888874421
Q ss_pred hHhHHHHHHHHHHhc--CCccccCCCCCCCccc----------hhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCC
Q psy6404 143 SPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCY----------TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS 210 (361)
Q Consensus 143 ~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~----------ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~ 210 (361)
..-+.+++.|+..+| +|||.......++..+ +-||...+-.....+...+++.++++.+.|.++|-++
T Consensus 400 ~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~ 479 (517)
T COG1657 400 EVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWR 479 (517)
T ss_pred hHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccc
Confidence 124678899999988 9999875443322222 3355555444333333346778999999999999888
Q ss_pred CCCC
Q psy6404 211 KWSD 214 (361)
Q Consensus 211 ~~p~ 214 (361)
..+.
T Consensus 480 ~~~~ 483 (517)
T COG1657 480 EAER 483 (517)
T ss_pred ccee
Confidence 6554
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.49 E-value=0.13 Score=55.54 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
+...|..+|+|..+|. .|.+++.-- .-+++.++|.+-..-.=.|-|+- +.|.--.-|++-+|.-||
T Consensus 258 v~~~q~~~GS~~~SPS------aTAaaL~~~-------~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLG 324 (800)
T PLN02592 258 LLKLQCQDGSFLFSPS------STAFALMQT-------KDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLG 324 (800)
T ss_pred HhcccCCCCCccCCch------HHHHHHhcc-------CchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcC
Confidence 5667888999999984 566665421 23566777755322111357766 566544459999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCC-CcCCCCCCCCChHHHHHHHH
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTG-GLSKWSDTQADILHTYLEAM 319 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~G-Gf~~~p~~~~D~~hT~~a~~ 319 (361)
-...+.. +.+.++|..+=...| |+.. +...+|++.|.++..
T Consensus 325 Is~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld~TALaFR 368 (800)
T PLN02592 325 ISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDIDDTAMGFR 368 (800)
T ss_pred CccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCHHHHHHHHH
Confidence 7643333 245555544211112 3322 123679999999854
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.26 E-value=0.072 Score=50.53 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHHHcc---CCCCCChhhHHHHHHHHHhccCCCCcccccCCCC--------CCchhHHHHHHHHHHHh
Q psy6404 2 STAEEAVLETAVEVLEAV---PPGVLALVYRLQISTSLRSFTTPCFSFKCTLADG--------DCDMRFVFCACSICYIL 70 (361)
Q Consensus 2 ~~~~~~~t~~al~~L~~L---~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~--------~~d~~~ty~al~~l~lL 70 (361)
+|=|-..|+..+.-|.-+ .++..-..-..+.++||.+.|.++|||+...+.. .+|..++ .++.+|
T Consensus 39 ~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~----~vl~lL 114 (290)
T TIGR02474 39 GTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV----NVLTLL 114 (290)
T ss_pred ccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH----HHHHHH
Confidence 456677899999888877 2232223345788999999999999998764311 1343332 333333
Q ss_pred cC-------CC----------cccHHHHHHHHHhcCCCCCCC
Q psy6404 71 DD-------WS----------GMDRARCLEFIFRSLSYDGAF 95 (361)
Q Consensus 71 ~~-------~~----------~~~~~~~i~~i~~~q~~dGGF 95 (361)
.. +. ..-.+++++||+++|-++||.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 115 DDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 21 10 123678999999999988864
No 59
>PLN02279 ent-kaur-16-ene synthase
Probab=96.12 E-value=0.21 Score=53.89 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=63.6
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
|+..|..||.|..+|. .|.+++.--. -+++.++|.+-+.-.=.|.|+- +.|....-|++.+|.-+|
T Consensus 218 v~~~q~~~Gs~~~SPs------aTAa~l~~~~-------~~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlG 284 (784)
T PLN02279 218 VMKYQRKNGSLFNSPS------TTAAAFSHLQ-------NAGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLG 284 (784)
T ss_pred HHhhcCCCCCcccCcH------HHHHHHHccC-------ChHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhC
Confidence 5677999999999884 5666554211 2567778754332111367776 777766669999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCCCcCCCCCCCCChHHHHHHH
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEA 318 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~~~~D~~hT~~a~ 318 (361)
....+.. +...+.+..+-. .| .++..+|++.|.++.
T Consensus 285 i~~hF~~EI~~~L~~~~~~~~-~~----~~~~~~Dl~~tAl~F 322 (784)
T PLN02279 285 IDRHFRKEIKSVLDETYRYWL-QG----EEEIFLDLATCALAF 322 (784)
T ss_pred CccccHHHHHHHHHHHHHhhc-cc----ccCCCCCHHHHHHHH
Confidence 7644433 234444433222 12 234468999999884
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.95 E-value=0.029 Score=53.17 Aligned_cols=101 Identities=9% Similarity=-0.020 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhc-----CCCcccHHHHHHHHHhcCCCCCCCCCCCC----CccCchh-hHHHHHHHHHhccc----ccc
Q psy6404 59 FVFCACSICYILD-----DWSGMDRARCLEFIFRSLSYDGAFGQGPC----LESHGGS-TYCALASLALMNKL----DTL 124 (361)
Q Consensus 59 ~ty~al~~l~lL~-----~~~~~~~~~~i~~i~~~q~~dGGF~~~p~----~~sh~~~-Ty~Al~sL~llg~~----~~~ 124 (361)
.|+..+.-|.-+- .....-..++++||++.|+++|||...-. ...|+.. =...+.+|.+|... +..
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 3555555444332 11234577899999999999999977631 1222221 01133444444321 110
Q ss_pred ccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCC
Q psy6404 125 RPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPN 166 (361)
Q Consensus 125 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~ 166 (361)
...+.. ..+. -...+++.++||+..| +||+.+.+.
T Consensus 125 ~~~~~~-~~~r------~~~Ai~Rgid~ILktQ~~~gg~~t~Wg 161 (290)
T TIGR02474 125 DVFPDS-TRTR------AKTAVTKGIECILKTQVVQNGKLTVWC 161 (290)
T ss_pred ccccHH-HHHH------HHHHHHHHHHHHHHhhcccCCcCCchh
Confidence 000000 0000 0235688999999999 888776654
No 61
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=91.67 E-value=12 Score=39.66 Aligned_cols=94 Identities=19% Similarity=0.098 Sum_probs=66.4
Q ss_pred CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCL 82 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i 82 (361)
..|+..+|+|+.+|+.| |...++ .+.+++++++.-.+ ..+++...|+++.+...|+.... -..++.
T Consensus 46 ~~dLes~yyav~glk~L-g~~~~~--~~~~C~~~~~~~~~----------s~~~~e~lfya~~~~~~L~C~~~-~~~~~~ 111 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLL-GIKVPD--SKAACKFLKKALDE----------SSNDLESLFYAASASKALKCKVS-VSNEVK 111 (636)
T ss_pred cccHHHHHHHHhhHHHh-CCCCCC--hhhHHHHHHHhhcc----------ccchHHHHHHHHHHHhhcCCccc-CcHHHH
Confidence 46889999999999999 766655 88999999863221 11467789999999999983221 134444
Q ss_pred HHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhcc
Q psy6404 83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK 120 (361)
Q Consensus 83 ~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~ 120 (361)
+-+.+.-+.| +.+..-|+|+.+|..+|.
T Consensus 112 ~~l~~~l~~~----------s~~~~iy~av~sl~~lg~ 139 (636)
T PF05817_consen 112 SLLKAALSED----------SSVSQIYYAVSSLKLLGL 139 (636)
T ss_pred HHHHHHhcCC----------ccHHHHHHHHHHHHHcCC
Confidence 4444433333 345668999999999985
No 62
>KOG1366|consensus
Probab=90.82 E-value=1.5 Score=50.47 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHccCCCCCChhhHHHHHHHHHh-------ccCCCCcccccCC-CCCCchhHHHHHHHHHHHhcCC---Cc
Q psy6404 7 AVLETAVEVLEAVPPGVLALVYRLQISTSLRS-------FTTPCFSFKCTLA-DGDCDMRFVFCACSICYILDDW---SG 75 (361)
Q Consensus 7 ~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~-------~Q~~dG~f~~~~~-~~~~d~~~ty~al~~l~lL~~~---~~ 75 (361)
+-+++.+.-|... +.+....+++.+++|.. .+++||+|..+-. .....+|.|-+.+..+..-..+ +.
T Consensus 946 aPni~v~~YL~~t--~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~ 1023 (1436)
T KOG1366|consen 946 APNIYVLKYLPKT--NQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDP 1023 (1436)
T ss_pred cchhhHHHHHhhh--hccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecH
Confidence 3456666777776 56665567788888774 3578999987632 1235577777777766655432 33
Q ss_pred ccHHHHHHHHHhcCCCCCCCCC
Q psy6404 76 MDRARCLEFIFRSLSYDGAFGQ 97 (361)
Q Consensus 76 ~~~~~~i~~i~~~q~~dGGF~~ 97 (361)
.-..++++|+...|.++|.|-.
T Consensus 1024 ~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1024 NVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHhhccCceEec
Confidence 4478899999999999999844
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=80.01 E-value=2.1 Score=46.35 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhccCCCCCCCCCCC--CCCchhhhhhhhhhccc-ccchhhHHHHHHHHH
Q psy6404 191 DEERLLLSVLDTQHMTGGLSKWSD--TQADILHTYLGEFFVRP-RIIKTQIESLKRWLI 246 (361)
Q Consensus 191 ~~~~~~~~I~scQ~~dGGf~~~p~--~~s~~~~T~~ala~L~~-~~~~~~~~~l~~WL~ 246 (361)
-...+++||++.|.+|||||..+. ..-....|..||.||.. ...+..+++.+.+|.
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~ 174 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFR 174 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 346799999999999999998532 12235678888888853 233344566666654
No 64
>PLN02279 ent-kaur-16-ene synthase
Probab=76.41 E-value=2.8 Score=45.44 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC----Cchhhhhhhhhhccc-ccchhhHHHHHHHH
Q psy6404 174 TFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ----ADILHTYLGEFFVRP-RIIKTQIESLKRWL 245 (361)
Q Consensus 174 ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~----s~~~~T~~ala~L~~-~~~~~~~~~l~~WL 245 (361)
|-|+..+-.. +.....-...+++||++-|.+||+||..+... -....|..||.||+. ...+..+++.+.++
T Consensus 58 TAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~~~~~gl~fi 133 (784)
T PLN02279 58 TAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEEQINKGLQFI 133 (784)
T ss_pred hHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCcccchhhHHHH
Confidence 4566555443 32222334679999999999999999653211 234678888888853 22223334444444
No 65
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=75.82 E-value=5.1 Score=38.82 Aligned_cols=94 Identities=22% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHh-
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFR- 156 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~- 156 (361)
.++.++.|++.|.+||-||. +++|--|+++|...+..... ...+..++.+++..-
T Consensus 217 i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~-----------------~~w~C~k~~~~ll~~i 272 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSE-----------------SEWNCQKALDALLKEI 272 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcc-----------------hhhHHHHHHHHHHHHh
Confidence 56677889999999999984 78999999999887763210 013567777887753
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCC
Q psy6404 157 QRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS 210 (361)
Q Consensus 157 QdGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~ 210 (361)
++|.|..- ..+..+|-.|...+..|+.. .+|+.++|.+-
T Consensus 273 ~~G~F~nP----------~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 273 SQGAFQNP----------MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp TTTTT-SH----------HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred hcCCCCCH----------HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence 48989642 13555665665545555543 57999988765
No 66
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=72.89 E-value=7.2 Score=37.14 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=49.0
Q ss_pred CCCchhHHHHHHHHHHccCCCCCCh-----hhHHHHHHHHHhccCCCCcccccCCCCC--------CchhHHHHHHHHHH
Q psy6404 2 STAEEAVLETAVEVLEAVPPGVLAL-----VYRLQISTSLRSFTTPCFSFKCTLADGD--------CDMRFVFCACSICY 68 (361)
Q Consensus 2 ~~~~~~~t~~al~~L~~L~g~~l~~-----~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--------~d~~~ty~al~~l~ 68 (361)
+|=|-..|+..|.-|.-+ -.... ..-.+.++||.+.|.|+|||+-..+... +|-.+ +.++.
T Consensus 34 ~TiDN~aT~~ei~fLa~~--y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam----~~vl~ 107 (289)
T PF09492_consen 34 STIDNDATTTEIRFLARV--YQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAM----VNVLE 107 (289)
T ss_dssp CE-GGGTTHHHHHHHHHH--HHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHH----HHHHH
T ss_pred CcccChhHHHHHHHHHHH--HHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHH----HHHHH
Confidence 456677899999998887 22211 2246789999999999999987644211 33222 23333
Q ss_pred Hhc-------CCC----------cccHHHHHHHHHhcCCC
Q psy6404 69 ILD-------DWS----------GMDRARCLEFIFRSLSY 91 (361)
Q Consensus 69 lL~-------~~~----------~~~~~~~i~~i~~~q~~ 91 (361)
+|. .+. ..-.++.+++|+++|-.
T Consensus 108 lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~ 147 (289)
T PF09492_consen 108 LLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIR 147 (289)
T ss_dssp HHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred HHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 332 111 12367899999999973
No 67
>KOG1366|consensus
Probab=63.95 E-value=18 Score=41.94 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHhcCCCcccHHHHHHHH-------HhcCCCCCCCCCCCC--CccCchhhHHHHHHHHHhcccccccc
Q psy6404 56 DMRFVFCACSICYILDDWSGMDRARCLEFI-------FRSLSYDGAFGQGPC--LESHGGSTYCALASLALMNKLDTLRP 126 (361)
Q Consensus 56 d~~~ty~al~~l~lL~~~~~~~~~~~i~~i-------~~~q~~dGGF~~~p~--~~sh~~~Ty~Al~sL~llg~~~~~~~ 126 (361)
.+..+++.+.-|...+.+++.-+++++.+| +..+++||.|+.+-. ......-|-+.+.++.....+ +
T Consensus 944 ~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~--i-- 1019 (1436)
T KOG1366|consen 944 NFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEY--I-- 1019 (1436)
T ss_pred cccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCc--e--
Confidence 344456677777777777666667776666 566789999876644 333345566666665544331 1
Q ss_pred chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404 127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG 163 (361)
Q Consensus 127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~ 163 (361)
.++...+.++++||..+| +|+|..
T Consensus 1020 -------------~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1020 -------------FIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred -------------EecHHHHHHHHHHHHHhhccCceEec
Confidence 134557789999999877 888863
No 68
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=59.18 E-value=8.9 Score=36.53 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCC-----CcccHHHHHHHHHhcCCCCCCCCCC
Q psy6404 59 FVFCACSICYILDDW-----SGMDRARCLEFIFRSLSYDGAFGQG 98 (361)
Q Consensus 59 ~ty~al~~l~lL~~~-----~~~~~~~~i~~i~~~q~~dGGF~~~ 98 (361)
.|+..+.-|.-+... ...-..+.++||++.|-|+|||.+.
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSE
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCcc
Confidence 355555544433211 1234678999999999999999775
No 69
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=54.49 E-value=2.8e+02 Score=29.63 Aligned_cols=140 Identities=14% Similarity=0.009 Sum_probs=77.7
Q ss_pred CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---Cc--cc
Q psy6404 3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SG--MD 77 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~--~~ 77 (361)
..++..-|+|+.+|..| |-+++.-+.+++++-|...+..|.+ +...-+++.+++.|... .. ..
T Consensus 121 ~s~~~~iy~av~sl~~l-g~~v~~~~~~~v~k~l~~~l~kdds-----------~~s~g~al~~aa~L~~~a~l~~~~~~ 188 (636)
T PF05817_consen 121 DSSVSQIYYAVSSLKLL-GLKVDEADSDEVVKALQASLKKDDS-----------LLSLGYALHAAAQLSKQADLADIVER 188 (636)
T ss_pred CccHHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHhccccc-----------HHHHHHHHHHHHhhccchhhhHHHHH
Confidence 35666789999999999 8777777889999988877766432 33344566666666421 11 22
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHH----hccccccccchhhhhHhhhhhhcCChHhHHHHHHHH
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLAL----MNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWL 153 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~l----lg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l 153 (361)
.++++... -..||..-.+.++ +..|-.-+..+.- .+...+ ++...+-+..+|+
T Consensus 189 ieD~v~qa---DEv~~~~LqFegg---Ls~TA~vv~g~~~la~~~~k~~~-----------------i~~dQivklanyl 245 (636)
T PF05817_consen 189 IEDAVAQA---DEVDGKYLQFEGG---LSTTALVVRGIYKLADAVGKKPP-----------------IKEDQIVKLANYL 245 (636)
T ss_pred HHHHHHhh---hhhcccceeecCC---chhhHHHHHHHHHHHHhhCCCCC-----------------CCHHHHHHHHHHH
Confidence 33333222 2223333222222 3334333333322 233222 2445677888888
Q ss_pred HHhcCCccccCCCCCCCccchhHHHHHHHHhhh
Q psy6404 154 IFRQRSGFQGRPNKPVDTCYTFWIGASLSILNA 186 (361)
Q Consensus 154 ~~~QdGgF~~~~~~~~D~~~ty~a~~~L~ll~~ 186 (361)
.++. ...+.+..|..+.+|..|..
T Consensus 246 Lsrr---------~v~s~k~a~~l~~al~~L~~ 269 (636)
T PF05817_consen 246 LSRR---------SVQSPKDAFNLLEALKSLSS 269 (636)
T ss_pred hcCC---------CCCCHHHHHHHHHHHHHHhh
Confidence 8652 22346667777777777643
No 70
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=47.00 E-value=2.5e+02 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHhcCCCCCCCCCCC
Q psy6404 76 MDRARCLEFIFRSLSYDGAFGQGP 99 (361)
Q Consensus 76 ~~~~~~i~~i~~~q~~dGGF~~~p 99 (361)
...++.|+.|.+||.+||=++..+
T Consensus 83 ~~~d~~V~~l~~~Q~~dGYl~~~~ 106 (520)
T PF07944_consen 83 AKADEIVDELAAAQQPDGYLGTYP 106 (520)
T ss_pred HHHHHHHHHHHHhccCCceecccc
Confidence 347789999999999998555444
No 71
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.90 E-value=2.5e+02 Score=27.72 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=44.4
Q ss_pred CCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhc-CCCcccHHHHHHHHHhcCCCCCCCCCCCC
Q psy6404 22 GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILD-DWSGMDRARCLEFIFRSLSYDGAFGQGPC 100 (361)
Q Consensus 22 ~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~-~~~~~~~~~~i~~i~~~q~~dGGF~~~p~ 100 (361)
+.++...|+++++||++.....- ...|-+.+.......|..++ .++....+..++.|.+.+.-||=|+-++.
T Consensus 127 ~~L~~~~k~~l~~wL~~~~~~~~-------~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~ 199 (361)
T PF10022_consen 127 DPLDEEEKENLVDWLKQIRGIKP-------PDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPE 199 (361)
T ss_pred hhCCHHHHHHHHHHHHhcCcCCC-------ccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCc
Confidence 35788889999999996543211 11122333333333444444 34456678888999999988886766664
No 72
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=38.72 E-value=74 Score=30.93 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhcccc---cc--hhhHHHHHHHHHHh-hcCCCCCCCCCCCcccc
Q psy6404 192 EERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPR---II--KTQIESLKRWLIFR-QRSGFQGRPNKPVDTCY 265 (361)
Q Consensus 192 ~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~---~~--~~~~~~l~~WL~~r-Q~gGF~GR~nK~~D~CY 265 (361)
++++++.|++.|.+||-||.. +.|-.|+-+|... .. ..+-.+.++++... +.|.|+.-
T Consensus 217 i~~~~~kIl~~q~~~G~~GNi-------ySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i~~G~F~nP--------- 280 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFGNI-------YSTGLAMQALSVSPSPPSESEWNCQKALDALLKEISQGAFQNP--------- 280 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BSST-------TTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHHTTTTT-SH---------
T ss_pred HHHHHHHHHHhcCCCCcccch-------hhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHhhcCCCCCH---------
Confidence 466788899999999999854 5788888887532 22 24567788888764 44767652
Q ss_pred cchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcC
Q psy6404 266 TFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLS 302 (361)
Q Consensus 266 sfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~ 302 (361)
-=+-..|..|....+.|... ..|+.+.|-+-
T Consensus 281 -~a~aQiLPaL~gKTYLDv~~-----~~C~~~~~~~~ 311 (326)
T PF01122_consen 281 -MAIAQILPALNGKTYLDVNS-----VDCSSPDGNLN 311 (326)
T ss_dssp -HHHHHHHHHHTT--GGGGGS-------SSS--EE--
T ss_pred -HHHHHHHHHHcCCCccccCC-----CCCCCCCCccc
Confidence 12233566666665666432 35888777655
Done!