Query psy6404
Match_columns 361
No_of_seqs 208 out of 1634
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 17:02:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n4q_B Geranyltransferase type 100.0 1.6E-69 5.6E-74 527.9 22.3 300 26-347 19-357 (377)
2 3dra_B Geranylgeranyltransfera 100.0 3E-68 1E-72 518.3 18.8 296 26-343 3-383 (390)
3 3q7a_B Farnesyltransferase bet 100.0 9.9E-67 3.4E-71 518.9 21.2 285 25-326 59-425 (520)
4 3dss_B Geranylgeranyl transfer 100.0 1E-65 3.5E-70 494.8 27.2 299 21-342 12-321 (331)
5 2h6f_B Protein farnesyltransfe 100.0 2.9E-64 9.8E-69 499.6 22.4 297 24-340 70-407 (437)
6 3dss_B Geranylgeranyl transfer 100.0 1.6E-46 5.5E-51 361.2 23.5 253 4-279 45-304 (331)
7 1n4q_B Geranyltransferase type 100.0 2E-44 6.8E-49 351.2 21.9 211 3-230 119-330 (377)
8 3dra_B Geranylgeranyltransfera 100.0 5.7E-43 1.9E-47 340.6 20.0 206 3-230 91-358 (390)
9 3q7a_B Farnesyltransferase bet 100.0 9.8E-41 3.4E-45 332.2 17.2 213 3-231 137-420 (520)
10 2h6f_B Protein farnesyltransfe 100.0 8.9E-39 3E-43 316.9 22.4 253 4-278 99-375 (437)
11 2sqc_A Squalene-hopene cyclase 99.9 1.1E-21 3.9E-26 203.6 23.4 240 4-267 309-608 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 3.4E-20 1.2E-24 195.1 22.0 247 4-265 384-701 (732)
13 2sqc_A Squalene-hopene cyclase 99.8 1.1E-18 3.6E-23 181.4 23.1 294 8-322 264-622 (631)
14 1w6k_A Lanosterol synthase; cy 99.8 1.6E-17 5.4E-22 174.8 20.3 278 9-305 341-691 (732)
15 1qqf_A Protein (complement C3D 99.4 3.6E-12 1.2E-16 119.1 15.2 161 78-255 40-259 (277)
16 2wy7_A Complement C3D fragment 99.4 2.3E-12 7.9E-17 122.4 12.4 174 78-272 56-288 (310)
17 1qqf_A Protein (complement C3D 99.3 5.1E-11 1.7E-15 111.2 16.2 173 32-229 43-270 (277)
18 2wy7_A Complement C3D fragment 99.2 1E-10 3.5E-15 111.0 15.1 174 31-229 58-286 (310)
19 1hzf_A Complement factor C4A; 99.0 1E-09 3.4E-14 106.7 12.2 89 30-119 94-197 (367)
20 1hzf_A Complement factor C4A; 99.0 2.2E-09 7.6E-14 104.2 12.9 161 78-255 93-345 (367)
21 2pn5_A TEP1R, thioester-contai 98.7 1.1E-07 3.7E-12 106.4 15.5 161 78-254 874-1086(1325)
22 2hr0_B Complement C3 alpha' ch 98.6 7E-07 2.4E-11 96.3 15.5 208 31-272 303-533 (915)
23 4acq_A Alpha-2-macroglobulin; 98.5 1.6E-06 5.3E-11 97.6 17.3 220 30-276 986-1244(1451)
24 2hr0_B Complement C3 alpha' ch 98.5 1.3E-06 4.5E-11 94.2 14.9 206 78-322 301-532 (915)
25 2pn5_A TEP1R, thioester-contai 98.5 1.4E-06 4.7E-11 97.5 15.2 64 33-97 878-945 (1325)
26 1r76_A Pectate lyase; A-helica 98.2 4.8E-06 1.6E-10 80.8 10.3 174 29-211 83-335 (408)
27 4acq_A Alpha-2-macroglobulin; 98.2 2.9E-05 1E-09 87.4 17.7 108 78-202 985-1108(1451)
28 1gxm_A Pectate lyase; mechanis 98.1 3.7E-06 1.3E-10 79.4 6.3 169 32-205 36-252 (332)
29 4fxk_B Complement C4-A alpha c 98.0 0.0004 1.4E-08 73.4 20.1 109 9-119 342-474 (767)
30 2b39_A C3; thioester, immune d 98.0 0.00037 1.3E-08 79.6 20.7 202 81-322 1051-1279(1661)
31 2b39_A C3; thioester, immune d 97.9 0.00018 6E-09 82.2 16.2 203 36-271 1055-1279(1661)
32 3cu7_A Complement C5; Mg domai 97.7 0.00034 1.2E-08 79.9 14.5 214 28-271 1041-1298(1676)
33 3cu7_A Complement C5; Mg domai 97.6 0.00062 2.1E-08 77.9 15.9 191 84-304 1055-1287(1676)
34 1r76_A Pectate lyase; A-helica 97.6 9.2E-05 3.1E-09 71.8 7.2 92 2-95 144-265 (408)
35 4fxk_B Complement C4-A alpha c 97.5 0.0023 7.8E-08 67.5 17.3 69 78-163 370-440 (767)
36 3sdr_A Alpha-bisabolene syntha 97.5 0.0016 5.4E-08 69.0 15.6 111 199-323 246-362 (817)
37 3prx_B Cobra venom factor; imm 97.3 2.9E-05 9.7E-10 88.1 0.0 196 29-256 1025-1250(1642)
38 1gxm_A Pectate lyase; mechanis 97.3 1.7E-05 5.8E-10 74.9 -2.2 93 2-96 69-189 (332)
39 3p5p_A Taxadiene synthase; cla 97.3 0.0032 1.1E-07 66.1 14.6 112 199-324 194-311 (764)
40 2bb6_A TCII, TC II, transcobal 97.2 0.0037 1.3E-07 60.9 13.2 140 62-231 139-283 (414)
41 3s9v_A Abietadiene synthase, c 97.2 0.017 5.7E-07 60.9 18.7 112 199-324 218-335 (785)
42 3pya_A ENT-copalyl diphosphate 97.0 0.025 8.5E-07 59.0 17.5 112 199-324 193-310 (727)
43 2bb6_A TCII, TC II, transcobal 97.0 0.0011 3.7E-08 64.6 6.7 97 2-115 174-281 (414)
44 3prx_B Cobra venom factor; imm 96.2 0.00073 2.5E-08 76.7 0.0 107 80-202 1034-1162(1642)
45 2pmv_A Gastric intrinsic facto 96.0 0.027 9.2E-07 54.5 9.5 96 3-115 149-257 (399)
46 2pmv_A Gastric intrinsic facto 95.6 0.045 1.5E-06 52.9 9.3 92 78-209 185-277 (399)
47 3pya_A ENT-copalyl diphosphate 78.5 1.9 6.5E-05 44.9 4.9 56 192-247 52-110 (727)
48 3s9v_A Abietadiene synthase, c 78.3 1.6 5.5E-05 45.9 4.4 58 191-248 75-135 (785)
49 3p5p_A Taxadiene synthase; cla 77.4 2.1 7.2E-05 44.9 4.9 58 191-248 54-114 (764)
50 3sdr_A Alpha-bisabolene syntha 76.3 2.4 8.2E-05 44.8 5.0 58 191-248 102-162 (817)
51 3ren_A Glycosyl hydrolase, fam 33.6 2.1E+02 0.0073 26.7 9.6 59 58-116 282-346 (350)
52 3k11_A Putative glycosyl hydro 21.6 1.9E+02 0.0065 28.0 7.1 88 5-95 268-371 (445)
No 1
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1.6e-69 Score=527.93 Aligned_cols=300 Identities=23% Similarity=0.357 Sum_probs=269.1
Q ss_pred hhhHHHHHHHHHhccCC-CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC---------CCCCC
Q psy6404 26 LVYRLQISTSLRSFTTP-CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLS---------YDGAF 95 (361)
Q Consensus 26 ~~~~~~~~~~L~~~Q~~-dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~---------~dGGF 95 (361)
.+.|++|++|++++.+. +++|... ..++++.+||++.+|.+|+.+...+++++++||++||+ ++|||
T Consensus 19 ~l~~~~H~~y~~~~l~~lp~~~~~~---d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF 95 (377)
T 1n4q_B 19 DFLRDRHVRFFQRCLQVLPERYSSL---ETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGF 95 (377)
T ss_dssp CCCHHHHHHHHHHHHHEECGGGGGG---GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEE
T ss_pred ccCHHHHHHHHHHHhhcCCcccccc---ccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCcc
Confidence 46799999999997643 4566664 35899999999999999997666779999999999999 68999
Q ss_pred CCCCCC-----------------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc-
Q psy6404 96 GQGPCL-----------------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ- 157 (361)
Q Consensus 96 ~~~p~~-----------------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q- 157 (361)
++++.. .+|+.+||+||.+|.+++.. +++++++++++||.+.|
T Consensus 96 ~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~-------------------~~~id~~~~~~fL~~~Q~ 156 (377)
T 1n4q_B 96 RGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD-------------------LSRVDKEACLAGLRALQL 156 (377)
T ss_dssp CSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC-------------------STTSCHHHHHHHHHHHBC
T ss_pred CCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc-------------------cchhhHHHHHHHHHHhcC
Confidence 998754 48999999999999999862 12347789999999988
Q ss_pred -CCccccC-CCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--cc
Q psy6404 158 -RSGFQGR-PNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RI 233 (361)
Q Consensus 158 -dGgF~~~-~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~ 233 (361)
||||.+. .+++.|+|+||||++++.+++..+.++++++++||++|||+|||||..|+.|||+++||||+++|.. ..
T Consensus 157 ~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~ 236 (377)
T 1n4q_B 157 EDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKL 236 (377)
T ss_dssp TTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCH
T ss_pred CCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCc
Confidence 9999997 6799999999999999999998888999999999999999999999999999999999999999863 22
Q ss_pred chh----hHHHHHHHHHHhhcCCCCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCC-CCCcCCCCCCC
Q psy6404 234 IKT----QIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDTQ 308 (361)
Q Consensus 234 ~~~----~~~~l~~WL~~rQ~gGF~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~-~GGf~~~p~~~ 308 (361)
+.. +++++++||++||.|||||||||++|+|||||++++|.+|+..+|+|.+++++||++||++ .|||+|+|++.
T Consensus 237 ~~~~~~~~~~rli~wL~~rQ~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~ 316 (377)
T 1n4q_B 237 EEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSH 316 (377)
T ss_dssp HHHSCHHHHHHHHHHHHTTBSSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSC
T ss_pred ccccchhhHHHHHHHHHhcCCCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCC
Confidence 222 7899999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CChHHHHHHH--HHhcccCCCccccccCCCCcccccchhhH
Q psy6404 309 ADILHTYLEA--MSHASRNKLKERNFQLPLDKKDIAPLDEL 347 (361)
Q Consensus 309 ~D~~hT~~a~--~sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (361)
||+|||||++ +||++++.+.|++|.++++++..++++++
T Consensus 317 ~D~~HT~~~LagLsl~~~~~l~~i~p~~~i~~~~~~~~~~~ 357 (377)
T 1n4q_B 317 PDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLRDL 357 (377)
T ss_dssp CBHHHHHHHHHHHHHTTCTTCCCEETTTTEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCcccCCHHHHHHHHHH
Confidence 9999999975 68889999999999999998877776666
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=3e-68 Score=518.28 Aligned_cols=296 Identities=20% Similarity=0.232 Sum_probs=256.8
Q ss_pred hhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC--CcccHHHHHHHHHhcCCCC----CCCCCC
Q psy6404 26 LVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDDW--SGMDRARCLEFIFRSLSYD----GAFGQG 98 (361)
Q Consensus 26 ~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~--~~~~~~~~i~~i~~~q~~d----GGF~~~ 98 (361)
.++|++|++|++++ +.-+..|.+. ..++++.+||++.+|.+|+.. ...++++.++||++||.++ |||+++
T Consensus 3 ~l~~~kHiky~~~~L~~Lp~~~~s~---D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~ 79 (390)
T 3dra_B 3 QLLINKHEKFFNRCLIGLPSTAQSE---DSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRST 79 (390)
T ss_dssp CCCHHHHHHHHHHHHHCCCGGGGGG---TTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSS
T ss_pred cccHHHHHHHHHHHHHhCCcchhhc---chhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCC
Confidence 46799999999985 4444566654 348999999999999999976 5678999999999998664 999999
Q ss_pred C-----C---CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc------CCccccC
Q psy6404 99 P-----C---LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ------RSGFQGR 164 (361)
Q Consensus 99 p-----~---~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q------dGgF~~~ 164 (361)
| + +.+|+++||+||.+|.+++.. . ++..+++++++||.++| ||||...
T Consensus 80 ~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~----------------~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~ 141 (390)
T 3dra_B 80 HYFQKTNQKYDCPNLSSTLFALYNLLILKSP--Y----------------HTIINRKKIMNFLCKCQVKDGINKGGFVPT 141 (390)
T ss_dssp GGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC--G----------------GGTCCHHHHHHHHHHHBCCSSTTTTCBCSE
T ss_pred ccCCCCCCccCcccHHHHHHHHHHHHHhCch--h----------------hccccHHHHHHHHHHHhCCCCCCCCceeee
Confidence 5 4 579999999999999999973 1 12348899999998765 6999954
Q ss_pred C-----------CCCCCccchhHHHHHHHHhhhhc-------------cccHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q psy6404 165 P-----------NKPVDTCYTFWIGASLSILNAAT-------------WIDEERLLLSVLDTQHMTGGLSKWSDTQADIL 220 (361)
Q Consensus 165 ~-----------~~~~D~~~ty~a~~~L~ll~~~~-------------~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~ 220 (361)
+ +++.|+|++|||++++.||+... .+|++++++||++|||+||||+..|+.|||++
T Consensus 142 ~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G 221 (390)
T 3dra_B 142 LYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLG 221 (390)
T ss_dssp EEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHH
T ss_pred ccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccc
Confidence 3 68999999999999999999876 68999999999999999999999999999999
Q ss_pred hhhhhhhhccc--ccchhhHHHHHHHHHHhhc------------------------------CCCCCCCCCCCcccccch
Q psy6404 221 HTYLGEFFVRP--RIIKTQIESLKRWLIFRQR------------------------------SGFQGRPNKPVDTCYTFW 268 (361)
Q Consensus 221 ~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~------------------------------gGF~GR~nK~~D~CYsfW 268 (361)
+|||||++|.. .. ..+++++++||++||. |||||||||++|+|||||
T Consensus 222 ~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~W 300 (390)
T 3dra_B 222 FTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWW 300 (390)
T ss_dssp HHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHH
T ss_pred hhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHH
Confidence 99999999863 22 3688999999999996 899999999999999999
Q ss_pred HHHHHHHhhc--cCcccHHHHHHHHHhc-cCC-CCCcCCCCCCCCChHHHHHHH--HHhccc--CCCccccccCCCCccc
Q psy6404 269 IGASLSILNS--ATWIDEERLLLSVLDT-QHM-TGGLSKWSDTQADILHTYLEA--MSHASR--NKLKERNFQLPLDKKD 340 (361)
Q Consensus 269 ~~a~L~~L~~--~~~~~~~~~~~~il~~-Q~~-~GGf~~~p~~~~D~~hT~~a~--~sl~~~--~~~~~~~~~~~~~~~~ 340 (361)
++++|.||+. .+|+|.+++++||+.| |++ .|||+|+|++.||+|||||++ +||+++ ++|.+|+|.++++++.
T Consensus 301 v~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~~~~~l~~vdp~~~ip~~~ 380 (390)
T 3dra_B 301 CTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKES 380 (390)
T ss_dssp HHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHHHHHTCCCEETTTTEEHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCCccCCCceeCchhcCCHHH
Confidence 9999999995 5799999999999976 676 999999999999999999976 577776 7899999999997766
Q ss_pred ccc
Q psy6404 341 IAP 343 (361)
Q Consensus 341 ~~~ 343 (361)
.++
T Consensus 381 ~~~ 383 (390)
T 3dra_B 381 YQF 383 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 3
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=9.9e-67 Score=518.85 Aligned_cols=285 Identities=21% Similarity=0.236 Sum_probs=249.9
Q ss_pred ChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhc-CCCcccHHHHHHHHHhcCCCCCCCCCCC--C
Q psy6404 25 ALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILD-DWSGMDRARCLEFIFRSLSYDGAFGQGP--C 100 (361)
Q Consensus 25 ~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~-~~~~~~~~~~i~~i~~~q~~dGGF~~~p--~ 100 (361)
+.++|++|++||+++ +.-+..|.+. ..++++.+||++.+|.+|+ .++..+++++++||++||++||||+++| +
T Consensus 59 ~~L~~~~Hi~yl~~~L~~LP~~y~~~---Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~ 135 (520)
T 3q7a_B 59 SGLRKQEHTQFLASSFFQLPGKFVSL---DASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANS 135 (520)
T ss_dssp CCCCHHHHHHHHHHHHSCBCGGGGGG---GGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTT
T ss_pred cccCHHHHHHHHHHHhhhCChhhhhc---ccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 468899999999987 4445566654 2479999999999999999 5666789999999999999999999999 9
Q ss_pred CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHh--HHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404 101 LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQ--IESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW 176 (361)
Q Consensus 101 ~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~--~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~ 176 (361)
+.+|+.+||+||++|.+++....-.. ++.++ ++++++||.++| ||||.+..+++.|+|+|||
T Consensus 136 ~~~hla~TysAV~aL~ilg~~~p~~~--------------~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~ 201 (520)
T 3q7a_B 136 QIPHLLPTYASVCSLAIAGNDSSTGG--------------WKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYC 201 (520)
T ss_dssp SCCCHHHHHHHHHHHHHHCBSSTTSB--------------HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhCccccchh--------------hhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHH
Confidence 99999999999999999997421000 12346 899999999988 9999998889999999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCC-----------------------CCCCCCchhhhhhhhhhccc--
Q psy6404 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSK-----------------------WSDTQADILHTYLGEFFVRP-- 231 (361)
Q Consensus 177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~-----------------------~p~~~s~~~~T~~ala~L~~-- 231 (361)
|+++|.+|+..+..+++++++||++||++|||||. .|+.|||+++|||||++|..
T Consensus 202 Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~ 281 (520)
T 3q7a_B 202 LLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLT 281 (520)
T ss_dssp HHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhc
Confidence 99999999987778899999999999999999999 68999999999999999863
Q ss_pred cc------chhhHHHHHHHHHHhhc-----CCCCCCCCCCCcccccchHHHHHHHhhcc---------------------
Q psy6404 232 RI------IKTQIESLKRWLIFRQR-----SGFQGRPNKPVDTCYTFWIGASLSILNSA--------------------- 279 (361)
Q Consensus 232 ~~------~~~~~~~l~~WL~~rQ~-----gGF~GR~nK~~D~CYsfW~~a~L~~L~~~--------------------- 279 (361)
.+ ...+++++++||++||. ||||||+||++|+|||||++++|.||+..
T Consensus 282 ~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~ 361 (520)
T 3q7a_B 282 SVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEK 361 (520)
T ss_dssp TSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC------------
T ss_pred cccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 22 35689999999999995 99999999999999999999999999874
Q ss_pred --C---------cccHHHHHHHHH-hccCCC---CCcCCCCCCCCChHHHHHHH--HHhcccCC
Q psy6404 280 --T---------WIDEERLLLSVL-DTQHMT---GGLSKWSDTQADILHTYLEA--MSHASRNK 326 (361)
Q Consensus 280 --~---------~~~~~~~~~~il-~~Q~~~---GGf~~~p~~~~D~~hT~~a~--~sl~~~~~ 326 (361)
+ ++|.+++++||+ +||++. |||+|+|++.||+|||||++ +||++++.
T Consensus 362 ~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~ 425 (520)
T 3q7a_B 362 EGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKM 425 (520)
T ss_dssp ---------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCE
T ss_pred ccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Confidence 2 479999999998 799987 99999999999999999975 68877664
No 4
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1e-65 Score=494.78 Aligned_cols=299 Identities=21% Similarity=0.323 Sum_probs=270.1
Q ss_pred CCCCChhhHHHHHHHHHhccCC--CCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCC
Q psy6404 21 PGVLALVYRLQISTSLRSFTTP--CFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQG 98 (361)
Q Consensus 21 g~~l~~~~~~~~~~~L~~~Q~~--dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~ 98 (361)
.+.-..++|++|++||+++... +..|... ..++++.+||++.+|.+|+.++..+++++++||++||++||||++.
T Consensus 12 ~~~~~~l~~~~h~~y~~~~~~~~~~~~~~~~---d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~ 88 (331)
T 3dss_B 12 SDAPDTLLLEKHADYIASYGSKKDDYEYCMS---EYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSAS 88 (331)
T ss_dssp TTSCCSCCHHHHHHHHHHTTSSSCGGGSGGG---GGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSS
T ss_pred CCCchhhhHHHHHHHHHHhccCCCCccceec---cccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCC
Confidence 3444568899999999997332 2334333 2489999999999999999888889999999999999999999999
Q ss_pred CCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhH
Q psy6404 99 PCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFW 176 (361)
Q Consensus 99 p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~ 176 (361)
|++++|+.+||+||++|.+++.++. ++++++++||.++| ||||.+++++++|+|+|||
T Consensus 89 ~g~~~~l~~Ty~Al~~L~~l~~~~~--------------------id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~ 148 (331)
T 3dss_B 89 IGHDPHLLYTLSAVQILTLYDSIHV--------------------INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFC 148 (331)
T ss_dssp TTSCBCHHHHHHHHHHHHHTTCGGG--------------------SCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHcCCccH--------------------HHHHHHHHHHhccCCCCCCEecccCCCCchHHHHH
Confidence 9999999999999999999986432 37899999999988 9999999999999999999
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CC
Q psy6404 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SG 252 (361)
Q Consensus 177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gG 252 (361)
|+++|.+++..+.++++++++||++||++||||+..|+.++|.++||||+++|.. ..+..+++++++||.+||. ||
T Consensus 149 Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGG 228 (331)
T 3dss_B 149 AVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGG 228 (331)
T ss_dssp HHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCC
Confidence 9999999998888999999999999999999999999999999999999999853 4556789999999999997 99
Q ss_pred CCCCCCCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCC-CCcCCCCCCCCChHHHHHHH--HHhcccCCCcc
Q psy6404 253 FQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMT-GGLSKWSDTQADILHTYLEA--MSHASRNKLKE 329 (361)
Q Consensus 253 F~GR~nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~-GGf~~~p~~~~D~~hT~~a~--~sl~~~~~~~~ 329 (361)
|+||+||++|+|||||++++|.+++..+|+|.+++++||++||+++ |||+++|++.||+||||+++ +|+++.+++.|
T Consensus 229 f~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~ 308 (331)
T 3dss_B 229 LNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKP 308 (331)
T ss_dssp BCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCC
T ss_pred cCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999999999999985 99999999999999999975 68889999999
Q ss_pred ccccCCCCccccc
Q psy6404 330 RNFQLPLDKKDIA 342 (361)
Q Consensus 330 ~~~~~~~~~~~~~ 342 (361)
++|.++++++..+
T Consensus 309 ~~p~~~~~~~~~~ 321 (331)
T 3dss_B 309 VSPVFCMPEEVLQ 321 (331)
T ss_dssp BCTTTSSBHHHHH
T ss_pred CCccccCCHHHHH
Confidence 9999999766544
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.9e-64 Score=499.62 Aligned_cols=297 Identities=23% Similarity=0.265 Sum_probs=263.9
Q ss_pred CChhhHHHHHHHHHhc-cCCCCcccccCCCCCCchhHHHHHHHHHHHhcC-CCcccHHHHHHHHHhcCCCCCCCCCCCCC
Q psy6404 24 LALVYRLQISTSLRSF-TTPCFSFKCTLADGDCDMRFVFCACSICYILDD-WSGMDRARCLEFIFRSLSYDGAFGQGPCL 101 (361)
Q Consensus 24 l~~~~~~~~~~~L~~~-Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~p~~ 101 (361)
.+.++++++++||.++ |+.+|+|.... .++++.+||++.+|.+|+. .+...++++++||++||++||||++.+++
T Consensus 70 ~~~l~~~~hi~~l~~~lq~~~gg~~a~D---~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~ 146 (437)
T 2h6f_B 70 RLVLQREKHFHYLKRGLRQLTDAYECLD---ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQ 146 (437)
T ss_dssp CCCCCHHHHHHHHHHHTTEECGGGGGGT---TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTC
T ss_pred cccccHHHHHHHHHHcCCCCCCCccccc---CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCC
Confidence 4567899999999999 89999999873 3578899999999999995 35567899999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHH
Q psy6404 102 ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGA 179 (361)
Q Consensus 102 ~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~ 179 (361)
++|+..||+||.+|.++|..+. .+.++++++++||.++| ||||.+++++++|+|+||||++
T Consensus 147 ~~~i~~T~~Al~aL~~lg~~~~-----------------~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~ 209 (437)
T 2h6f_B 147 YPHLAPTYAAVNALCIIGTEEA-----------------YDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAAS 209 (437)
T ss_dssp CBCHHHHHHHHHHHHHHCCHHH-----------------HTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCccc-----------------ccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHH
Confidence 9999999999999999996311 12247899999999988 9999999999999999999999
Q ss_pred HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc---CCCC
Q psy6404 180 SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR---SGFQ 254 (361)
Q Consensus 180 ~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~---gGF~ 254 (361)
+|.+++..+..+++++++||++||++||||+..|+.+||+++|||||++|.. ..+..+++++++||++||. |||+
T Consensus 210 ~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~ 289 (437)
T 2h6f_B 210 VASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQ 289 (437)
T ss_dssp HHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBB
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCcc
Confidence 9999998777788999999999999999999999999999999999999863 4556789999999999997 9999
Q ss_pred CCCCCCCcccccchHHHHHHHhhccC-------------cccHHHHHHHHHh-ccCCCCCcCCCCCCCCChHHHHHHH--
Q psy6404 255 GRPNKPVDTCYTFWIGASLSILNSAT-------------WIDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYLEA-- 318 (361)
Q Consensus 255 GR~nK~~D~CYsfW~~a~L~~L~~~~-------------~~~~~~~~~~il~-~Q~~~GGf~~~p~~~~D~~hT~~a~-- 318 (361)
|||||++|+|||||++++|.+|+... ++|.+++++||+. ||+++|||+|+|++.||+|||||++
T Consensus 290 gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~g 369 (437)
T 2h6f_B 290 GRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSG 369 (437)
T ss_dssp SSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999998641 5899999999985 8899999999999999999999976
Q ss_pred HHhccc----------------CCCccccccCCCCccc
Q psy6404 319 MSHASR----------------NKLKERNFQLPLDKKD 340 (361)
Q Consensus 319 ~sl~~~----------------~~~~~~~~~~~~~~~~ 340 (361)
+|++++ +.+.||+|.+++....
T Consensus 370 Lsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~~~ 407 (437)
T 2h6f_B 370 LSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDK 407 (437)
T ss_dssp HHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHH
T ss_pred HHHhccccccccccccccCCcccCccccCCcccCCHHH
Confidence 577664 5788899888886533
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.6e-46 Score=361.21 Aligned_cols=253 Identities=20% Similarity=0.289 Sum_probs=234.9
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i~ 83 (361)
..++.|||+|.+|++| ++++.++|+++++||+++|++||||++.+ +.++++..||+|+.+|.+++.++.++++++++
T Consensus 45 ~r~~~~yw~l~~L~lL--g~l~~~~r~~~i~~l~s~Q~~dGGF~g~~-g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~ 121 (331)
T 3dss_B 45 LRMSGVYWGLTVMDLM--GQLHRMNKEEILVFIKSCQHECGGVSASI-GHDPHLLYTLSAVQILTLYDSIHVINVDKVVA 121 (331)
T ss_dssp GHHHHHHHHHHHHHHT--TCGGGSCHHHHHHHHHHTBCTTSCBBSST-TSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--CCCchhhHHHHHHHHhhhcCCCCCcCCCC-CCCccHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 4578999999999999 46888999999999999999999999984 56789999999999999999888889999999
Q ss_pred HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcc
Q psy6404 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGF 161 (361)
Q Consensus 84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF 161 (361)
||.++|++||||++.+++++|+..||||+++|.+++..+. ++++++++||.++| ||||
T Consensus 122 fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~--------------------~~~~k~v~~L~s~Q~~dGGf 181 (331)
T 3dss_B 122 YVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDA--------------------INVEKAIEFVLSCMNFDGGF 181 (331)
T ss_dssp HHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGG--------------------SCHHHHHHHHHTTBCTTSCB
T ss_pred HHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCH--------------------HHHHHHHHHHHHhCcCCCCc
Confidence 9999999999999999999999999999999999997432 37889999999998 9999
Q ss_pred ccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--ccchhhHH
Q psy6404 162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--RIIKTQIE 239 (361)
Q Consensus 162 ~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~~~~~~~~ 239 (361)
.++|+.++|+++||||+++|.+++..+.++.+++++||.++|++||||+..|+.++|..+||+++++|.. .....+++
T Consensus 182 g~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~ 261 (331)
T 3dss_B 182 GCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDRE 261 (331)
T ss_dssp CSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHH
Confidence 9999999999999999999999999888999999999999999999999999999999999999999853 44557899
Q ss_pred HHHHHHHHhhc---CCCCCCCCCCCcccccchHHHHHHHhhcc
Q psy6404 240 SLKRWLIFRQR---SGFQGRPNKPVDTCYTFWIGASLSILNSA 279 (361)
Q Consensus 240 ~l~~WL~~rQ~---gGF~GR~nK~~D~CYsfW~~a~L~~L~~~ 279 (361)
++++||...|. |||..+|+|.+|.+++||.+++|.+++..
T Consensus 262 ~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~ 304 (331)
T 3dss_B 262 KLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE 304 (331)
T ss_dssp HHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999885 99999999999999999999999999974
No 7
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2e-44 Score=351.22 Aligned_cols=211 Identities=42% Similarity=0.780 Sum_probs=196.8
Q ss_pred CCchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCcccHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCL 82 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~~~~~~~i 82 (361)
+++++.||+||.+|.+| |+.++.++|+++++||+++|+|||+|.+...++++|+++||+|+.++.+|+..+.+++++++
T Consensus 119 ~~~v~~T~~Al~~L~~l-g~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~ 197 (377)
T 1n4q_B 119 SGHIAMTYTGLSCLIIL-GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAI 197 (377)
T ss_dssp CCCHHHHHHHHHHHHHT-TCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 58999999999999999 88899999999999999999999999987557889999999999999999987788999999
Q ss_pred HHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccc
Q psy6404 83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQ 162 (361)
Q Consensus 83 ~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~ 162 (361)
+||++||++|||||..|+.|+|...||||+++|.+++..+.. .+..+++++++||..+|+|||.
T Consensus 198 ~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~----------------~~~~~~~rli~wL~~rQ~gGf~ 261 (377)
T 1n4q_B 198 SYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV----------------FSEKELNRIKRWCIMRQQNGYH 261 (377)
T ss_dssp HHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHH----------------SCHHHHHHHHHHHHTTBSSSBC
T ss_pred HHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccc----------------cchhhHHHHHHHHHhcCCCCcC
Confidence 999999999999999999999999999999999999974321 1123789999999999999999
Q ss_pred cCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404 163 GRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLGEFFVR 230 (361)
Q Consensus 163 ~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~-dGGf~~~p~~~s~~~~T~~ala~L~ 230 (361)
|+|+|.+|+||+||+.++|.+|+....+|.+++++||++||+. +|||+..|+..+|..|||++|++|.
T Consensus 262 GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf~~~p~~~~D~~HT~~~LagLs 330 (377)
T 1n4q_B 262 GRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLS 330 (377)
T ss_dssp SSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSBCSSTTSCCBHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988889999999999999999 9999999999999999999999885
No 8
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=5.7e-43 Score=340.57 Aligned_cols=206 Identities=29% Similarity=0.403 Sum_probs=188.0
Q ss_pred CCchhHHHHHHHHHHccCCCC-CChhhHHHHHHHHHhccC---C-CCcccccC----------CCCCCchhHHHHHHHHH
Q psy6404 3 TAEEAVLETAVEVLEAVPPGV-LALVYRLQISTSLRSFTT---P-CFSFKCTL----------ADGDCDMRFVFCACSIC 67 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~-l~~~~~~~~~~~L~~~Q~---~-dG~f~~~~----------~~~~~d~~~ty~al~~l 67 (361)
+||++.||+||.+|.+| |++ ++.+||+++++||+++|+ | ||+|...+ .+++.|+|++|||++++
T Consensus 91 ~~hl~~Ty~Al~~L~il-g~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~ 169 (390)
T 3dra_B 91 CPNLSSTLFALYNLLIL-KSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIR 169 (390)
T ss_dssp CCBHHHHHHHHHHHHHT-TCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh-CchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHH
Confidence 69999999999999999 776 688999999999999998 7 89999654 14689999999999999
Q ss_pred HHhcCCC-------------cccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHh
Q psy6404 68 YILDDWS-------------GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLD 134 (361)
Q Consensus 68 ~lL~~~~-------------~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~ 134 (361)
.+|+... .++.+++++||++||++||||+..|+.|+|.++|||||++|.+|+...
T Consensus 170 ~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~------------ 237 (390)
T 3dra_B 170 HLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL------------ 237 (390)
T ss_dssp HHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG------------
T ss_pred HHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc------------
Confidence 9999766 588999999999999999999999999999999999999999999741
Q ss_pred hhhhhcCChHhHHHHHHHHHHhc------------------------------CCccccCCCCCCCccchhHHHHHHHHh
Q psy6404 135 LVKSFLFYSPQIESLKRWLIFRQ------------------------------RSGFQGRPNKPVDTCYTFWIGASLSIL 184 (361)
Q Consensus 135 ~v~~~~~~~~~~~~~~~~l~~~Q------------------------------dGgF~~~~~~~~D~~~ty~a~~~L~ll 184 (361)
.+++++++||..|| +|||+|+++|.+|+||+||++++|.||
T Consensus 238 ---------~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL 308 (390)
T 3dra_B 238 ---------EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNI 308 (390)
T ss_dssp ---------GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHh
Confidence 26788999999988 299999999999999999999999999
Q ss_pred hh--hccccHHHHHHHHHhc-cCC-CCCCCCCCCCCCchhhhhhhhhhcc
Q psy6404 185 NA--ATWIDEERLLLSVLDT-QHM-TGGLSKWSDTQADILHTYLGEFFVR 230 (361)
Q Consensus 185 ~~--~~~~~~~~~~~~I~sc-Q~~-dGGf~~~p~~~s~~~~T~~ala~L~ 230 (361)
+. ...+|.+++.+||++| |+. .|||+..|+..+|..|||++|++|.
T Consensus 309 ~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLs 358 (390)
T 3dra_B 309 DVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLS 358 (390)
T ss_dssp CGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence 94 5679999999999998 665 8999999999999999999999985
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=9.8e-41 Score=332.23 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=189.9
Q ss_pred CCchhHHHHHHHHHHccCCCC-----CChhh--HHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCCc
Q psy6404 3 TAEEAVLETAVEVLEAVPPGV-----LALVY--RLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSG 75 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~~-----l~~~~--~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~~ 75 (361)
.++++.||+||++|.+| +.. ++.++ |+++++||+++|++||+|.+. .+++.|+++||+|+.++.+|+..+.
T Consensus 137 ~~hla~TysAV~aL~il-g~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~-~wGe~Dir~TY~Al~~L~lLg~~~~ 214 (520)
T 3q7a_B 137 IPHLLPTYASVCSLAIA-GNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVC-EGGEVDVRGTYCLLVVATLLDIITP 214 (520)
T ss_dssp CCCHHHHHHHHHHHHHH-CBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSS-TTCCBCHHHHHHHHHHHHHHTCCCH
T ss_pred CCcHHHHHHHHHHHHHh-CccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecC-CCCCchHHHHHHHHHHHHHcCCCCh
Confidence 58999999999999999 643 56788 999999999999999999886 3678999999999999999998777
Q ss_pred ccHHHHHHHHHhcCCCCCCCCC-----------------------CCCCccCchhhHHHHHHHHHhccccccccchhhhh
Q psy6404 76 MDRARCLEFIFRSLSYDGAFGQ-----------------------GPCLESHGGSTYCALASLALMNKLDTLRPTQASLY 132 (361)
Q Consensus 76 ~~~~~~i~~i~~~q~~dGGF~~-----------------------~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~ 132 (361)
++.+++++||++||++|||||. .|+.|+|+++|||||++|.+|+.++....
T Consensus 215 ~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~------ 288 (520)
T 3q7a_B 215 ELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSF------ 288 (520)
T ss_dssp HHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTC------
T ss_pred HHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhcccccccc------
Confidence 8899999999999999999999 67999999999999999999998642100
Q ss_pred HhhhhhhcCChHhHHHHHHHHHHhc-----CCccccCCCCCCCccchhHHHHHHHHhhhh--------------------
Q psy6404 133 LDLVKSFLFYSPQIESLKRWLIFRQ-----RSGFQGRPNKPVDTCYTFWIGASLSILNAA-------------------- 187 (361)
Q Consensus 133 l~~v~~~~~~~~~~~~~~~~l~~~Q-----dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~-------------------- 187 (361)
....+.+++++||..|| +|||+|+++|.+|+||+||+.++|.||+..
T Consensus 289 --------~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~ 360 (520)
T 3q7a_B 289 --------PLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEE 360 (520)
T ss_dssp --------SCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC-----------
T ss_pred --------ccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 01347899999999999 399999999999999999999999999864
Q ss_pred ------------ccccHHHHHHHHH-hccCCC---CCCCCCCCCCCchhhhhhhhhhccc
Q psy6404 188 ------------TWIDEERLLLSVL-DTQHMT---GGLSKWSDTQADILHTYLGEFFVRP 231 (361)
Q Consensus 188 ------------~~~~~~~~~~~I~-scQ~~d---GGf~~~p~~~s~~~~T~~ala~L~~ 231 (361)
..+|.+++.+||+ .||+.. |||+..|+..+|.+|||++|++|..
T Consensus 361 ~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl 420 (520)
T 3q7a_B 361 KEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSI 420 (520)
T ss_dssp ----------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Confidence 1368899999999 699997 9999999999999999999999863
No 10
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=8.9e-39 Score=316.92 Aligned_cols=253 Identities=20% Similarity=0.231 Sum_probs=226.2
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRAR 80 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~ 80 (361)
.+.+.+|++|.+|.+| |..++..+++++++||+++|++||||.+.. ++.+++..||+|+.+|.+++.. ..+++++
T Consensus 99 ~r~~l~y~~l~aL~lL-g~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~-~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~k 176 (437)
T 2h6f_B 99 SRPWLCYWILHSLELL-DEPIPQIVATDVCQFLELCQSPEGGFGGGP-GQYPHLAPTYAAVNALCIIGTEEAYDIINREK 176 (437)
T ss_dssp CHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHBCTTSSBBSST-TCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHH
T ss_pred CCccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhCCCCCCcCCcc-CCCcchhHHHHHHHHHHHhCCcccccchHHHH
Confidence 3567899999999999 777788889999999999999999999873 5678999999999999999853 5578999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--C
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--R 158 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--d 158 (361)
+++||+++|++||||++.+++++|+..||||+++|.+++..+. ..++++++||.++| |
T Consensus 177 av~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~--------------------~~v~k~~~~L~s~Q~~D 236 (437)
T 2h6f_B 177 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITP--------------------DLFEGTAEWIARCQNWE 236 (437)
T ss_dssp HHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCT--------------------TTTTTHHHHHHHHBCTT
T ss_pred HHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCCh--------------------HHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999987432 25678999999999 9
Q ss_pred CccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccC-CCCCCCCCCCCCCchhhhhhhhhhccc--cc--
Q psy6404 159 SGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQH-MTGGLSKWSDTQADILHTYLGEFFVRP--RI-- 233 (361)
Q Consensus 159 GgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~-~dGGf~~~p~~~s~~~~T~~ala~L~~--~~-- 233 (361)
|||.++|+++++.++||||+++|.+++..+.++.+++++||++||. ++|||...|+..+|.-|||+++++|.. ..
T Consensus 237 GGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~ 316 (437)
T 2h6f_B 237 GGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALH 316 (437)
T ss_dssp SSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHH
T ss_pred CCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999888999999999999999 799999999999999999999988742 11
Q ss_pred -----------chhhHHHHHHHHHH-hhc--CCCCCCCCCCCcccccchHHHHHHHhhc
Q psy6404 234 -----------IKTQIESLKRWLIF-RQR--SGFQGRPNKPVDTCYTFWIGASLSILNS 278 (361)
Q Consensus 234 -----------~~~~~~~l~~WL~~-rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L~~ 278 (361)
...+.+++.+||.. .|. |||..+|++.+|...+|+.+++|.+++.
T Consensus 317 ~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~yHT~y~L~gLsl~~~ 375 (437)
T 2h6f_B 317 AQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQH 375 (437)
T ss_dssp HTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHE
T ss_pred cccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 12568999999986 343 9999999999999999999999999984
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.89 E-value=1.1e-21 Score=203.62 Aligned_cols=240 Identities=15% Similarity=-0.001 Sum_probs=178.5
Q ss_pred CchhHHHHHHHHHHccCCCCCChhhHHHHHHHHHhccCCC-Cc------------ccccC-CCCCCchhHHHHHHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLALVYRLQISTSLRSFTTPC-FS------------FKCTL-ADGDCDMRFVFCACSICYI 69 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~Q~~d-G~------------f~~~~-~~~~~d~~~ty~al~~l~l 69 (361)
+.+++|.+++.+|..+ |...+....++.++||++.|..+ |. |.... ....++++.|.+++.+|..
T Consensus 309 s~vwdta~~l~AL~~~-G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~ 387 (631)
T 2sqc_A 309 SPVWDTGLAVLALRAA-GLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNT 387 (631)
T ss_dssp CHHHHHHHHHHHHHHT-TCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHH
Confidence 4578999999999999 75444556889999999988642 43 33211 1233678888888888887
Q ss_pred hcCCC----cccHHHHHHHHHhcCCCCCCCCCCCCC-------------------ccCchhhHHHHHHHHHhcccccccc
Q psy6404 70 LDDWS----GMDRARCLEFIFRSLSYDGAFGQGPCL-------------------ESHGGSTYCALASLALMNKLDTLRP 126 (361)
Q Consensus 70 L~~~~----~~~~~~~i~~i~~~q~~dGGF~~~p~~-------------------~sh~~~Ty~Al~sL~llg~~~~~~~ 126 (361)
++... ....+++++||+++|++||||+..+.. .+++..|..++.+|..++.. .
T Consensus 388 ~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~-~--- 463 (631)
T 2sqc_A 388 LRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD-D--- 463 (631)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC-T---
T ss_pred cCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC-c---
Confidence 77531 235788999999999999999764321 14566788899988888752 1
Q ss_pred chhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhc----cccHHHHHHHHH
Q psy6404 127 TQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAAT----WIDEERLLLSVL 200 (361)
Q Consensus 127 ~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~----~~~~~~~~~~I~ 200 (361)
....++++++||.+.| ||||.+++ +++++|+...++..|.... ...++++++||+
T Consensus 464 ---------------~~~~i~rai~~L~~~Q~~DGsw~g~w----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~ 524 (631)
T 2sqc_A 464 ---------------AWKVIRRAVEYLKREQKPDGSWFGRW----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVE 524 (631)
T ss_dssp ---------------TSHHHHHHHHHHHHHCCTTSCCCCSS----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhcCCCCCCCCCC----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 1246789999999888 99997765 3678887766666665432 356789999999
Q ss_pred hccCCCCCCCCCC----------CCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCCCCCCC---CCcc
Q psy6404 201 DTQHMTGGLSKWS----------DTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQGRPNK---PVDT 263 (361)
Q Consensus 201 scQ~~dGGf~~~p----------~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK---~~D~ 263 (361)
+||++||||+..+ ..+++...|++||.+|.. ......++++++||.++|. |||...... ...+
T Consensus 525 s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~ 604 (631)
T 2sqc_A 525 QHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGD 604 (631)
T ss_dssp HTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTT
T ss_pred HhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCccccccccc
Confidence 9999999998643 456889999999999853 2234568899999999996 899876544 4467
Q ss_pred cccc
Q psy6404 264 CYTF 267 (361)
Q Consensus 264 CYsf 267 (361)
||--
T Consensus 605 ~yl~ 608 (631)
T 2sqc_A 605 FYLG 608 (631)
T ss_dssp EEEE
T ss_pred ceee
Confidence 7765
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.85 E-value=3.4e-20 Score=195.07 Aligned_cols=247 Identities=14% Similarity=0.040 Sum_probs=177.4
Q ss_pred CchhHHHHHHHHHHccCCCCCC---hhhHHHHHHHHHhccCCC--------------CcccccCC-CCCCchhHHHHHHH
Q psy6404 4 AEEAVLETAVEVLEAVPPGVLA---LVYRLQISTSLRSFTTPC--------------FSFKCTLA-DGDCDMRFVFCACS 65 (361)
Q Consensus 4 ~~~~~t~~al~~L~~L~g~~l~---~~~~~~~~~~L~~~Q~~d--------------G~f~~~~~-~~~~d~~~ty~al~ 65 (361)
+.+++|..++++|.-. |..-+ ....++.++||+++|..+ |+|+.... .+.+++..|..++.
T Consensus 384 s~vwdTalal~AL~~a-g~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEA-GGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CHHHHHHHHHHHHHHT-TGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHc-CCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 5689999999999988 52111 224678999999998765 88875532 23467778888888
Q ss_pred HHHHhcC--------CCcccHHHHHHHHHhcCCCCCCCCCCCC---------------------CccCchhhHHHHHHHH
Q psy6404 66 ICYILDD--------WSGMDRARCLEFIFRSLSYDGAFGQGPC---------------------LESHGGSTYCALASLA 116 (361)
Q Consensus 66 ~l~lL~~--------~~~~~~~~~i~~i~~~q~~dGGF~~~p~---------------------~~sh~~~Ty~Al~sL~ 116 (361)
+|..+.. ......+++++||+++|++||||+.... ..+++..|.++|.+|.
T Consensus 463 aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~ 542 (732)
T 1w6k_A 463 AVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALK 542 (732)
T ss_dssp HHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHH
Confidence 8777642 2233468999999999999999964321 1134567888999998
Q ss_pred Hhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhcc----
Q psy6404 117 LMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATW---- 189 (361)
Q Consensus 117 llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~---- 189 (361)
.++.. +..+... ....++++++||.++| ||||.++++ ..++..|++++.+|.+++....
T Consensus 543 ~~~~~~~~~~~~~-------------~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~ 608 (732)
T 1w6k_A 543 YFHKRFPEHRAAE-------------IRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTA 608 (732)
T ss_dssp HHHHHCTTSSHHH-------------HHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBC
T ss_pred Hhccccccccchh-------------hHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccch
Confidence 88752 1111000 0235789999999988 999988654 3344556688888888876421
Q ss_pred -ccHHHHHHHHHhccCCCCCCCCC----------CCCCCchhhhhhhhhhccc--ccchhhHHHHHHHHHHhhc--CCCC
Q psy6404 190 -IDEERLLLSVLDTQHMTGGLSKW----------SDTQADILHTYLGEFFVRP--RIIKTQIESLKRWLIFRQR--SGFQ 254 (361)
Q Consensus 190 -~~~~~~~~~I~scQ~~dGGf~~~----------p~~~s~~~~T~~ala~L~~--~~~~~~~~~l~~WL~~rQ~--gGF~ 254 (361)
..++++++||+++|+.||||+.. ++.+++...|++|+.+|.. ..+...++++++||.++|. |||.
T Consensus 609 ~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~ 688 (732)
T 1w6k_A 609 CAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWP 688 (732)
T ss_dssp CHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCC
T ss_pred hHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCcc
Confidence 35789999999999999999964 3566889999999999853 3345678899999999997 8998
Q ss_pred CCCCC--CCcccc
Q psy6404 255 GRPNK--PVDTCY 265 (361)
Q Consensus 255 GR~nK--~~D~CY 265 (361)
-++.. ...+||
T Consensus 689 ~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 689 QENIAGVFNKSCA 701 (732)
T ss_dssp CCSCCEEETTTEE
T ss_pred CCcccccccchhh
Confidence 65532 345565
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.82 E-value=1.1e-18 Score=181.36 Aligned_cols=294 Identities=12% Similarity=0.000 Sum_probs=201.3
Q ss_pred HHHHHHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC-CcccHHHHHHH
Q psy6404 8 VLETAVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDDW-SGMDRARCLEF 84 (361)
Q Consensus 8 ~t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~-~~~~~~~~i~~ 84 (361)
.|+.++..|..+ |-+ +....+++++.+.+. ..+||++.... ..+.++.|.+++.+|..++.. +....+++++|
T Consensus 264 ~~~~~~~~l~~~-g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~--~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~ 339 (631)
T 2sqc_A 264 PWFYALIALKIL-DMT-QHPAFIKGWEGLELYGVELDYGGWMFQA--SISPVWDTGLAVLALRAAGLPADHDRLVKAGEW 339 (631)
T ss_dssp HHHHHHHHHHHT-TCT-TSHHHHHHHHGGGGGEEECTTSCEEECS--SCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCC-CCHHHHHHHHHHHhceEEcCCCceeeCC--CCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 577889999999 744 444567777777775 35786665432 247788999999888888743 34568899999
Q ss_pred HHhcCCCC-------------CCC--CCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHH
Q psy6404 85 IFRSLSYD-------------GAF--GQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESL 149 (361)
Q Consensus 85 i~~~q~~d-------------GGF--~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~ 149 (361)
|.++|..+ ||| +..+...+++..|..++.+|..++..+.. .....++++
T Consensus 340 L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~----------------~~~~~l~~a 403 (631)
T 2sqc_A 340 LLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDER----------------RRRDAMTKG 403 (631)
T ss_dssp HHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHH----------------HHHHHHHHH
T ss_pred HHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccc----------------hhHHHHHHH
Confidence 99998643 332 22233456788899999999888762110 012367889
Q ss_pred HHHHHHhc--CCccccCCCC----------------C---CCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhccCCCC
Q psy6404 150 KRWLIFRQ--RSGFQGRPNK----------------P---VDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTG 207 (361)
Q Consensus 150 ~~~l~~~Q--dGgF~~~~~~----------------~---~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~scQ~~dG 207 (361)
++||.++| ||||...+.. . .++..|..++.+|..++.. ....++++++||+++|++||
T Consensus 404 ~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DG 483 (631)
T 2sqc_A 404 FRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDG 483 (631)
T ss_dssp HHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCC
Confidence 99999988 8999642110 1 2333455566666666531 12457899999999999999
Q ss_pred CCCCCCCCCCchhhhhhhhhhccc---ccchhhHHHHHHHHHHhhc--CCCCCCC----------CCCCcccccchHHHH
Q psy6404 208 GLSKWSDTQADILHTYLGEFFVRP---RIIKTQIESLKRWLIFRQR--SGFQGRP----------NKPVDTCYTFWIGAS 272 (361)
Q Consensus 208 Gf~~~p~~~s~~~~T~~ala~L~~---~~~~~~~~~l~~WL~~rQ~--gGF~GR~----------nK~~D~CYsfW~~a~ 272 (361)
||....+. .+...|..++.+|.. ......++++++||.++|. |||...+ ...+|+..++|++.+
T Consensus 484 sw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALla 562 (631)
T 2sqc_A 484 SWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMA 562 (631)
T ss_dssp CCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHH
T ss_pred CCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHH
Confidence 99543332 244556666666642 1234578999999999997 8884322 234677889999999
Q ss_pred HHHhhccCcccHHHHHHHHHhccCCCCCcCCCCCCCC----------ChHHHHHHHHHhc
Q psy6404 273 LSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQA----------DILHTYLEAMSHA 322 (361)
Q Consensus 273 L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p~~~~----------D~~hT~~a~~sl~ 322 (361)
|..++.......++..+||+++|+++|||...+.... ..|.+++.+.+|.
T Consensus 563 L~~ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~ 622 (631)
T 2sqc_A 563 LIAGGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALG 622 (631)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHH
Confidence 9998875433346789999999999999988765422 3466777776654
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.76 E-value=1.6e-17 Score=174.76 Aligned_cols=278 Identities=13% Similarity=-0.006 Sum_probs=184.8
Q ss_pred HHHHHHHHHccCCCCCChhhHHHHHHHHHhc--cCCCCcccccCCCCCCchhHHHHHHHHHHHhcCCC----cccHHHHH
Q psy6404 9 LETAVEVLEAVPPGVLALVYRLQISTSLRSF--TTPCFSFKCTLADGDCDMRFVFCACSICYILDDWS----GMDRARCL 82 (361)
Q Consensus 9 t~~al~~L~~L~g~~l~~~~~~~~~~~L~~~--Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~~----~~~~~~~i 82 (361)
....+..+... | .+.....++++.|.+. ..+||.+.... ..+.++.|-+++.+|...+... ....++++
T Consensus 341 ~l~~l~~~~~~-G--~~~~~~~~~l~~l~~~l~~~~dG~~~q~~--~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~ 415 (732)
T 1w6k_A 341 TINMLVRWYVD-G--PASTAFQEHVSRIPDYLWMGLDGMKMQGT--NGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAH 415 (732)
T ss_dssp HHHHHHHHHHH-C--TTSHHHHHHHHTSGGGEEEETTEEEECSS--SCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHH
T ss_pred HHHHHHHHHhc-C--CCCHHHHHHHHHHHHhheeCCCCceeCCC--CCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHH
Confidence 34444445444 4 3333466677777764 56777654321 1256777777776666555321 23468999
Q ss_pred HHHHhcCCCC--------------CCCCCCCC--CccCchhhHHHHHHHHHhccccc-cccchhhhhHhhhhhhcCChHh
Q psy6404 83 EFIFRSLSYD--------------GAFGQGPC--LESHGGSTYCALASLALMNKLDT-LRPTQASLYLDLVKSFLFYSPQ 145 (361)
Q Consensus 83 ~~i~~~q~~d--------------GGF~~~p~--~~sh~~~Ty~Al~sL~llg~~~~-~~~~~~~~~l~~v~~~~~~~~~ 145 (361)
+||+++|..+ |||+.... ..+++..|..++.+|..+...+. ... ......
T Consensus 416 ~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~-------------~~~~~~ 482 (732)
T 1w6k_A 416 EFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTE-------------HIPRER 482 (732)
T ss_dssp HHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCS-------------CCCHHH
T ss_pred HHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccc-------------hhhHHH
Confidence 9999999866 88766542 45688889999999988764321 000 012346
Q ss_pred HHHHHHHHHHhc--CCccccCC----------------CCCCCcc--c---hhHHHHHHHHhhhhc--------cccHHH
Q psy6404 146 IESLKRWLIFRQ--RSGFQGRP----------------NKPVDTC--Y---TFWIGASLSILNAAT--------WIDEER 194 (361)
Q Consensus 146 ~~~~~~~l~~~Q--dGgF~~~~----------------~~~~D~~--~---ty~a~~~L~ll~~~~--------~~~~~~ 194 (361)
++++++||.++| ||||.... .+...+. + |..++.+|..++... ...+++
T Consensus 483 i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~r 562 (732)
T 1w6k_A 483 LCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ 562 (732)
T ss_dssp HHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHH
Confidence 789999999988 99995321 1111122 3 334566666665421 234789
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCchhhhhhhhhhccc--c-cch----hhHHHHHHHHHHhhc--CCCCCCC--------
Q psy6404 195 LLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRP--R-IIK----TQIESLKRWLIFRQR--SGFQGRP-------- 257 (361)
Q Consensus 195 ~~~~I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~--~-~~~----~~~~~l~~WL~~rQ~--gGF~GR~-------- 257 (361)
+++||+++|++||||....+. .+...|++++.+|.. . ... ..++++++||.++|. ||+....
T Consensus 563 Av~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y 641 (732)
T 1w6k_A 563 GLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRY 641 (732)
T ss_dssp HHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSC
T ss_pred HHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCcccccccc
Confidence 999999999999999875543 344567777777742 1 112 468999999999997 8887542
Q ss_pred --CCCCcccccchHHHHHHHhhccCcccHHHHHHHHHhccCCCCCcCCCC
Q psy6404 258 --NKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWS 305 (361)
Q Consensus 258 --nK~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~il~~Q~~~GGf~~~p 305 (361)
.+.+|.+.+.|++-+|..++..+....++..+||+++|+++|||...+
T Consensus 642 ~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~ 691 (732)
T 1w6k_A 642 VQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQEN 691 (732)
T ss_dssp CBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCc
Confidence 446788999999988877775433344678999999999999998655
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.40 E-value=3.6e-12 Score=119.06 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R 156 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~ 156 (361)
.++.+++++++|++||||+.+++..++...|-+++.+|..+.....+ +...++++++||.. +
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v-----------------~~~~i~~a~~~L~~~~ 102 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAI-----------------DSQVLCGAVKWLILEK 102 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCC-----------------CHHHHHHHHHHHHHhc
Confidence 44455669999999999999998888999999999999888764222 23467899999995 8
Q ss_pred c--CCccccCCCC-------------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCC---------
Q psy6404 157 Q--RSGFQGRPNK-------------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHM--------- 205 (361)
Q Consensus 157 Q--dGgF~~~~~~-------------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~--------- 205 (361)
| ||+|.+...- +.+..+|..++.+|...+.. ....++++++||.++++.
T Consensus 103 Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~ 182 (277)
T 1qqf_A 103 QKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAI 182 (277)
T ss_dssp BCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred cCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 8 9999875421 11233344555555444321 123467899999999774
Q ss_pred ------------------------CCCCCCCCCCCC-chhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 206 ------------------------TGGLSKWSDTQA-DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 206 ------------------------dGGf~~~p~~~s-~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
+|++-..|+..+ ....|.+||.+|........++++++||.++|. |||..
T Consensus 183 ~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 183 AGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec
Confidence 344444444321 445688888887543344578899999999876 78876
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.38 E-value=2.3e-12 Score=122.41 Aligned_cols=174 Identities=14% Similarity=0.013 Sum_probs=116.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R 156 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~ 156 (361)
.++.+++++++|++||||+.+++..++...|-+++.+|..+.....+ +...++++++||.. +
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v-----------------~~~~i~~a~~~L~~~~ 118 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAI-----------------DSQVLCGAVKWLILEK 118 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCC-----------------CHHHHHHHHHHHHHhh
Confidence 44556669999999999999998888889999999999888764222 23467899999995 8
Q ss_pred c--CCccccCCCC-------------CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCC---------
Q psy6404 157 Q--RSGFQGRPNK-------------PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHM--------- 205 (361)
Q Consensus 157 Q--dGgF~~~~~~-------------~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~--------- 205 (361)
| ||+|.+...- +.+..+|..++.+|...+.. ....++++++||.+||+.
T Consensus 119 Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~ 198 (310)
T 2wy7_A 119 QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAI 198 (310)
T ss_dssp BCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHH
T ss_pred cCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8 9999875421 12233344555555444321 123467899999999874
Q ss_pred ------------------------CCCCCCCCCCCC-chhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCCCCCC
Q psy6404 206 ------------------------TGGLSKWSDTQA-DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPN 258 (361)
Q Consensus 206 ------------------------dGGf~~~p~~~s-~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~n 258 (361)
+|++-..++..+ ....|.+||.+|........++++++||.++|. |||...
T Consensus 199 ~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sT-- 276 (310)
T 2wy7_A 199 AGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST-- 276 (310)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTCH--
T ss_pred HHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecc--
Confidence 334433333221 445788888887543334578899999999876 788653
Q ss_pred CCCcccccchHHHH
Q psy6404 259 KPVDTCYTFWIGAS 272 (361)
Q Consensus 259 K~~D~CYsfW~~a~ 272 (361)
-||....+.++-
T Consensus 277 --q~T~~aL~AL~~ 288 (310)
T 2wy7_A 277 --QATFMVFQALAQ 288 (310)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 455544444433
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.30 E-value=5.1e-11 Score=111.20 Aligned_cols=173 Identities=12% Similarity=0.079 Sum_probs=110.6
Q ss_pred HHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCCC------
Q psy6404 32 ISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPCL------ 101 (361)
Q Consensus 32 ~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~~------ 101 (361)
.++++.++|++||||+... +..++++.|-+++.++...... +....+++++||.+ .|++||+|.+....
T Consensus 43 g~~~~l~~q~~dGgf~~f~-~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~ 121 (277)
T 1qqf_A 43 GYTQQLAFKQPISAYAAFN-NRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI 121 (277)
T ss_dssp HHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHhcCCCCCccccC-CCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence 3444888999999998873 4567888888888888887643 22346789999995 99999999654311
Q ss_pred -------ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc---------------
Q psy6404 102 -------ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--------------- 157 (361)
Q Consensus 102 -------~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--------------- 157 (361)
++.+..|..++.+|...+... .+.+ ..+.++++++||..++
T Consensus 122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~---------------~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayA 186 (277)
T 1qqf_A 122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNS---------------LPGSINKAGEYLEASYLNLQRPYTVAIAGYA 186 (277)
T ss_dssp GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTT---------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCCCCCccCccchHHHHHHHHHhhhhccccCCCc---------------hHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 123445666677665553210 0000 0124555666665443
Q ss_pred --------------------CCccccCCCCC-CCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404 158 --------------------RSGFQGRPNKP-VDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ 216 (361)
Q Consensus 158 --------------------dGgF~~~~~~~-~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~ 216 (361)
+|+|...++.. .++..|-|++.++...+. ..+.+++++||.+.|+++|||...
T Consensus 187 l~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT---- 260 (277)
T 1qqf_A 187 LALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST---- 260 (277)
T ss_dssp HHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH----
T ss_pred HHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc----
Confidence 23333332211 144556566666655543 467899999999999999999764
Q ss_pred Cchhhhhhhhhhc
Q psy6404 217 ADILHTYLGEFFV 229 (361)
Q Consensus 217 s~~~~T~~ala~L 229 (361)
-.|..||-+|
T Consensus 261 ---q~T~~aL~AL 270 (277)
T 1qqf_A 261 ---QATFMVFQAL 270 (277)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---hHHHHHHHHH
Confidence 3666776665
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.24 E-value=1e-10 Score=111.00 Aligned_cols=174 Identities=13% Similarity=0.070 Sum_probs=110.1
Q ss_pred HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCCC-----
Q psy6404 31 QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPCL----- 101 (361)
Q Consensus 31 ~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~~----- 101 (361)
+.++++.++|++||||+... +..++++.|-+++.++...... +....+++++||.+ .|++||+|.+....
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~-~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~ 136 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFV-KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 136 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHhcCCCCCcccCC-CCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhh
Confidence 34555889999999998874 4567888888888888877643 22346789999996 99999999654311
Q ss_pred --------ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--------------
Q psy6404 102 --------ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ-------------- 157 (361)
Q Consensus 102 --------~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q-------------- 157 (361)
++.+..|..++.+|...+... .+.+ ..+.++++++||..++
T Consensus 137 ~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~---------------~~~~i~~A~~~L~~~~~~~~~~y~~a~~ay 201 (310)
T 2wy7_A 137 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS---------------LPGSITKAGDFLEANYMNLQRSYTVAIAGY 201 (310)
T ss_dssp GGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTT---------------HHHHHHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred cCCcccccccccchHHHHHHHHHhcccccccCCcc---------------hHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 123445666677665553210 0000 0123445555555433
Q ss_pred ---------------------CCccccCCCCC-CCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCC
Q psy6404 158 ---------------------RSGFQGRPNKP-VDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDT 215 (361)
Q Consensus 158 ---------------------dGgF~~~~~~~-~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~ 215 (361)
+|+|...++.. .++..|-|++.++...+. ..+.+++++||.+.|+++|||...
T Consensus 202 AL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT--- 276 (310)
T 2wy7_A 202 ALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGST--- 276 (310)
T ss_dssp HHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTCH---
T ss_pred HHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc---
Confidence 23343332211 144556666666655553 467899999999999999999653
Q ss_pred CCchhhhhhhhhhc
Q psy6404 216 QADILHTYLGEFFV 229 (361)
Q Consensus 216 ~s~~~~T~~ala~L 229 (361)
-.|..||-+|
T Consensus 277 ----q~T~~aL~AL 286 (310)
T 2wy7_A 277 ----QATFMVFQAL 286 (310)
T ss_dssp ----HHHHHHHHHH
T ss_pred ----HHHHHHHHHH
Confidence 3566666665
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.05 E-value=1e-09 Score=106.65 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=64.3
Q ss_pred HHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHhcCCCCCCCCCCCCC-----
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFRSLSYDGAFGQGPCL----- 101 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~p~~----- 101 (361)
++.++||.++|++||||+... +...+.+.|-+++..|...+.. +....+++++||.+.|++||+|...-..
T Consensus 94 ~~g~~~ll~~Q~~dGgf~~~~-~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 94 QKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHhccCCCCCeeccC-CCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 556889999999999998763 3456788888888877776632 2345788999999999999999764211
Q ss_pred -------ccCchhhHHHHHHHHHhc
Q psy6404 102 -------ESHGGSTYCALASLALMN 119 (361)
Q Consensus 102 -------~sh~~~Ty~Al~sL~llg 119 (361)
++.+..|.+++.+|...+
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g 197 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGL 197 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhh
Confidence 223556777777776544
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.01 E-value=2.2e-09 Score=104.19 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ 157 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q 157 (361)
.++.+++|+++|++||||+..++..++...|.+++-.|..++..-. .+...++++++||.++|
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~-----------------v~~~~i~~a~~~L~~~Q 155 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG-----------------GSPEKLQETSNWLLSQQ 155 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTC-----------------CCHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHhh
Confidence 6678899999999999999888766777778888888877775311 12346789999999888
Q ss_pred --CCccccCCCC------------CCCccchhHHHHHHHHhhhh------------ccccHHHHHHHHHhc--cC-----
Q psy6404 158 --RSGFQGRPNK------------PVDTCYTFWIGASLSILNAA------------TWIDEERLLLSVLDT--QH----- 204 (361)
Q Consensus 158 --dGgF~~~~~~------------~~D~~~ty~a~~~L~ll~~~------------~~~~~~~~~~~I~sc--Q~----- 204 (361)
||+|.++... ++++..|.+++.+|...+.. ....++++++||.++ ++
T Consensus 156 ~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y 235 (367)
T 1hzf_A 156 QADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAH 235 (367)
T ss_dssp CTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred ccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHH
Confidence 9999875321 12344456676666544321 112357788998776 21
Q ss_pred -------------------------------CCCC---CCCCC---------------------CCCC-chhhhhhhhhh
Q psy6404 205 -------------------------------MTGG---LSKWS---------------------DTQA-DILHTYLGEFF 228 (361)
Q Consensus 205 -------------------------------~dGG---f~~~p---------------------~~~s-~~~~T~~ala~ 228 (361)
.+|+ |+... ...+ ..-.|.+||.+
T Consensus 236 ~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLa 315 (367)
T 1hzf_A 236 AAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLH 315 (367)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHH
Confidence 1444 43311 0111 45677888888
Q ss_pred ccc-ccchhhHHHHHHHHHHhhc--CCCCC
Q psy6404 229 VRP-RIIKTQIESLKRWLIFRQR--SGFQG 255 (361)
Q Consensus 229 L~~-~~~~~~~~~l~~WL~~rQ~--gGF~G 255 (361)
|.. ..+.....++++||.+.|. |||..
T Consensus 316 ll~~~~~~~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 316 LLLHEGKAEMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred HHhccCchhhhHHHHHHHHhCcCCCCCccc
Confidence 742 2233467899999998664 77764
No 21
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.72 E-value=1.1e-07 Score=106.39 Aligned_cols=161 Identities=14% Similarity=0.017 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ 157 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q 157 (361)
.++.+++++++|++||||+.+++..++...|.+++.+|..+...... .+...++++++||..+|
T Consensus 874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~----------------v~~~~l~~a~~~L~~~q 937 (1325)
T 2pn5_A 874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISD----------------IDAAMVEKALDWLASKQ 937 (1325)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSC----------------SCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEc----------------CCHHHHHHHHHHHHhhh
Confidence 34455567999999999999999889999999999999888653210 12345788999999887
Q ss_pred --CCccccCCC-------CCCCccchhHH--HHHHHHhhhhc---cccHHHHHHHHHhccCC-CCCCCCC----------
Q psy6404 158 --RSGFQGRPN-------KPVDTCYTFWI--GASLSILNAAT---WIDEERLLLSVLDTQHM-TGGLSKW---------- 212 (361)
Q Consensus 158 --dGgF~~~~~-------~~~D~~~ty~a--~~~L~ll~~~~---~~~~~~~~~~I~scQ~~-dGGf~~~---------- 212 (361)
||+|.+... +..+.+.+|.+ +.+|.-.+... ...++++++||.++|+. +++++..
T Consensus 938 ~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g 1017 (1325)
T 2pn5_A 938 HFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNG 1017 (1325)
T ss_dssp CTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcC
Confidence 899977532 22333444443 33332222221 13467788999988776 6665321
Q ss_pred -C------------------------CCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCCC
Q psy6404 213 -S------------------------DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGFQ 254 (361)
Q Consensus 213 -p------------------------~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF~ 254 (361)
+ ...+..-.|.+||.+|..........++++||.++|. |||.
T Consensus 1018 ~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A 1018 HTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp CTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCS
T ss_pred CchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhccchhhHHHHHHHHhccCCCCCcc
Confidence 0 0012334566777666433334467889999976544 5554
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.57 E-value=7e-07 Score=96.33 Aligned_cols=208 Identities=14% Similarity=0.109 Sum_probs=121.4
Q ss_pred HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCCCC------
Q psy6404 31 QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQGPC------ 100 (361)
Q Consensus 31 ~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~p~------ 100 (361)
+.++++..+|++||||+... +..++.+.|-+++..+..+... ...-.+++++||.+ .|++||+|.....
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~-~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m 381 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFV-KRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEM 381 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSS-SSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCC
T ss_pred HHHHHHHHhhcCCCCccccC-CCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhh
Confidence 34566888999999999874 4467888888888877766532 22347889999995 9999999854321
Q ss_pred --C-----ccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCc
Q psy6404 101 --L-----ESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDT 171 (361)
Q Consensus 101 --~-----~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~ 171 (361)
+ ++.+..|.+++.+|...+... .+.+ ....+.++++||..+++. . .+.
T Consensus 382 ~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~---------------~~~~i~~A~~yL~~~~~~-~-------~~~ 438 (915)
T 2hr0_B 382 IGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNS---------------LPGSITKAGDFLEANYMN-L-------QRS 438 (915)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTT---------------HHHHHHHHHHHHHHHGGG-C-------CSH
T ss_pred cCCccCccccccccHHHHHHHHHhcccccccCccc---------------chHHHHHHHHHHHHhhhc-c-------CCH
Confidence 1 123455666777776665420 0000 023567889999876521 0 111
Q ss_pred cchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCC-CCCCCCCC-CchhhhhhhhhhcccccchhhHHHHHHHHHHhh
Q psy6404 172 CYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGG-LSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ 249 (361)
Q Consensus 172 ~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGG-f~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ 249 (361)
...-.+..+|.+.+. . .+.+++.|.++.. +|. |.. ++.. ++.-.|.+||.+|........+.++++||.++|
T Consensus 439 y~~a~layAL~l~g~---~-a~~~l~~L~~~~~-~~~~w~~-~~~~~~~ve~TayaLlall~~~~~~~~~~~v~wL~~qq 512 (915)
T 2hr0_B 439 YTVAIAGYALAQMGR---L-KGPLLNKFLTTAK-DKNRWED-PGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQR 512 (915)
T ss_dssp HHHHHHHHHHHTTTC---C-CHHHHHHHHHTSB-TTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCC---h-HHHHHHHHHhhcc-CCCCCCC-CCCCccchHHHHHHHHHHHhcCChhhHHHHHHHHHhcc
Confidence 111112223444442 2 4556666777554 333 322 2221 245567888887753323345788999999876
Q ss_pred c--CCCCCCCCCCCcccccchHHHH
Q psy6404 250 R--SGFQGRPNKPVDTCYTFWIGAS 272 (361)
Q Consensus 250 ~--gGF~GR~nK~~D~CYsfW~~a~ 272 (361)
. |||..- -||.+..++++.
T Consensus 513 ~~~Ggw~ST----QdT~~Al~AL~~ 533 (915)
T 2hr0_B 513 YYGGGYGST----QATFMVFQALAQ 533 (915)
T ss_dssp CSSSSCCSH----HHHHHHHHHHHH
T ss_pred cCCCCccch----hhHHHHHHHHHH
Confidence 4 666542 445444444433
No 23
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.52 E-value=1.6e-06 Score=97.61 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=134.8
Q ss_pred HHHHHHHHhccCCCCcccccCCC---CCCchhHHHHHHHHHHHhcC---CCcccHHHHHHHHHhcCCCCCCCCCC-C---
Q psy6404 30 LQISTSLRSFTTPCFSFKCTLAD---GDCDMRFVFCACSICYILDD---WSGMDRARCLEFIFRSLSYDGAFGQG-P--- 99 (361)
Q Consensus 30 ~~~~~~L~~~Q~~dG~f~~~~~~---~~~d~~~ty~al~~l~lL~~---~~~~~~~~~i~~i~~~q~~dGGF~~~-p--- 99 (361)
++.++|+..+|++||||+..... ...+.+.|-+++..|..... ......+++++||.+.|++||+|... +
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 35678888899999999976321 34788888888888887653 23345888999999999999998632 1
Q ss_pred ----CC-ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccch
Q psy6404 100 ----CL-ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYT 174 (361)
Q Consensus 100 ----~~-~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~t 174 (361)
++ +.++..|.+++.+|...+.... ...++++++||..+-+. +... ....+....
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~-------------------~~~i~~A~~~L~~~~~~-~~~~-~~~~~~y~~ 1124 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVT-------------------HPVVRNALFCLESAWKT-AQEG-DHGSHVYTK 1124 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTT-------------------CHHHHHHHHHHHHHHHH-HTSS-CSSSTHHHH
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCC-------------------CHHHHHHHHHHHHhhhh-cccc-cccCChHHH
Confidence 11 3456678888888887775211 23578899999854211 1000 000112222
Q ss_pred hHHHHHHHHhhhhccccHHHHHHHHHhccCCCCC---CCCCCC------------C-CCchhhhhhhhhhccccc-----
Q psy6404 175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGG---LSKWSD------------T-QADILHTYLGEFFVRPRI----- 233 (361)
Q Consensus 175 y~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGG---f~~~p~------------~-~s~~~~T~~ala~L~~~~----- 233 (361)
..+..+|.+.+.. ...+.+.+-|.+....+|| |+.... . ....-.|.+||.++....
T Consensus 1125 AllAyAlal~g~~--~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~ 1202 (1451)
T 4acq_A 1125 ALLAYAFALAGNQ--DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTS 1202 (1451)
T ss_dssp HHHHHHHHHHTCH--HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCH
T ss_pred HHHHHHHHhcCCh--hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccc
Confidence 2344456665532 1233456666666666666 332111 0 123456888888875321
Q ss_pred -chhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHHHHHHh
Q psy6404 234 -IKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGASLSIL 276 (361)
Q Consensus 234 -~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a~L~~L 276 (361)
+.....++++||.++|. |||..- -||++.+-+++-+..+
T Consensus 1203 ~d~~~a~~iv~WL~~qr~~~Ggf~ST----QdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A 1203 EDLTSATNIVKWITKQQNAQGGFSST----QDTVVALHALSKYGAA 1244 (1451)
T ss_dssp HHHHHHHTTHHHHTTCCCTTSCCSSH----HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHcCCCCCCcccH----HHHHHHHHHHHHHHHh
Confidence 23456788999987664 777653 4777777777666554
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.48 E-value=1.3e-06 Score=94.22 Aligned_cols=206 Identities=13% Similarity=-0.013 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R 156 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~ 156 (361)
.++.++++++.|++||||+.+++..++...|-+++..|..+..... .+...++++++||.. +
T Consensus 301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~-----------------v~~~~i~~al~~L~~~~ 363 (915)
T 2hr0_B 301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIA-----------------IDSQVLCGAVKWLILEK 363 (915)
T ss_dssp HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSC-----------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCC-----------------CCHHHHHHHHHHHHHhh
Confidence 4456777999999999999998877777888888887777664322 123467889999994 7
Q ss_pred c--CCccccCCC--------C-----CCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhccCCC-CCCCCCC
Q psy6404 157 Q--RSGFQGRPN--------K-----PVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDTQHMT-GGLSKWS 213 (361)
Q Consensus 157 Q--dGgF~~~~~--------~-----~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~scQ~~d-GGf~~~p 213 (361)
| +|+|.+... + +.+...|.+++.+|...+.. ....+.++++||.+.+..- +++
T Consensus 364 Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y---- 439 (915)
T 2hr0_B 364 QKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSY---- 439 (915)
T ss_dssp BCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHH----
T ss_pred ccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHH----
Confidence 7 899975431 1 12233344555555544332 1123568899999987641 110
Q ss_pred CCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCC-CCCCCCC-CCcccccchHHHHHHHhhccCcccHHHHHHHH
Q psy6404 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSG-FQGRPNK-PVDTCYTFWIGASLSILNSATWIDEERLLLSV 291 (361)
Q Consensus 214 ~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gG-F~GR~nK-~~D~CYsfW~~a~L~~L~~~~~~~~~~~~~~i 291 (361)
+ .....+|++.. .. . .+.+++.|.....+| +-.+... ..|.--+-|++-+|...+ ......++.+||
T Consensus 440 ---~-~a~layAL~l~-g~--~--a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~--~~~~~~~~v~wL 508 (915)
T 2hr0_B 440 ---T-VAIAGYALAQM-GR--L--KGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLK--DFDFVPPVVRWL 508 (915)
T ss_dssp ---H-HHHHHHHHHTT-TC--C--CHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTT--CTTTHHHHHHHH
T ss_pred ---H-HHHHHHHHHHc-CC--h--HHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcC--ChhhHHHHHHHH
Confidence 0 11112233221 11 1 345566666543222 1111110 011111123333333333 333456788999
Q ss_pred HhccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 292 LDTQHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 292 l~~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
...|+..|||... ..|.+|+.+|+
T Consensus 509 ~~qq~~~Ggw~ST-------QdT~~Al~AL~ 532 (915)
T 2hr0_B 509 NEQRYYGGGYGST-------QATFMVFQALA 532 (915)
T ss_dssp HTCCCSSSSCCSH-------HHHHHHHHHHH
T ss_pred HhcccCCCCccch-------hhHHHHHHHHH
Confidence 9999999999763 45777765554
No 25
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.47 E-value=1.4e-06 Score=97.52 Aligned_cols=64 Identities=8% Similarity=0.065 Sum_probs=50.8
Q ss_pred HHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC----CcccHHHHHHHHHhcCCCCCCCCC
Q psy6404 33 STSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW----SGMDRARCLEFIFRSLSYDGAFGQ 97 (361)
Q Consensus 33 ~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~----~~~~~~~~i~~i~~~q~~dGGF~~ 97 (361)
++++.++|++||||+... +..++.+.|.+++.+|..+... +..-.+++++||.+.|++||.|.+
T Consensus 878 ~~rll~~q~~dGgf~~f~-~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 878 YQNQMRYRQTDGSFGLWE-TTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp HHHHGGGBCTTSCBCSSS-SSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred HHHHHhcCCCCCCeeccC-CCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence 445588999999999884 5567899999999988887532 223467899999999999999855
No 26
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.22 E-value=4.8e-06 Score=80.78 Aligned_cols=174 Identities=10% Similarity=-0.028 Sum_probs=90.6
Q ss_pred HHHHHHHHHhccCCCCcccccCCC-------------------------------------CCCchhHHHHHHHHHHHhc
Q psy6404 29 RLQISTSLRSFTTPCFSFKCTLAD-------------------------------------GDCDMRFVFCACSICYILD 71 (361)
Q Consensus 29 ~~~~~~~L~~~Q~~dG~f~~~~~~-------------------------------------~~~d~~~ty~al~~l~lL~ 71 (361)
.+++.+.|...|+++|||.-+.+- ...|...|...+..|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 578999999999999999643110 0122333444444444332
Q ss_pred CC-C-------cccHHHHHHHHHhcCCCCCCCCCCCCC----ccCch----hhHHHHHHHHHhccc-cccccchhhhhHh
Q psy6404 72 DW-S-------GMDRARCLEFIFRSLSYDGAFGQGPCL----ESHGG----STYCALASLALMNKL-DTLRPTQASLYLD 134 (361)
Q Consensus 72 ~~-~-------~~~~~~~i~~i~~~q~~dGGF~~~p~~----~sh~~----~Ty~Al~sL~llg~~-~~~~~~~~~~~l~ 134 (361)
.. . ..-..++++||+++|.+||||+.+--. -.|+. .|-..|..|..++.. ..+ .|++
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~------~~~~ 236 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGF------GFVP 236 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTC------TTSC
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcc------cccc
Confidence 21 1 223578999999999999999877321 12222 233344444443321 111 0000
Q ss_pred h-hhhhcCChHhHHHHHHHHHHhc---CCccccCCCC--CCCc-----cc-----hhHHHHHH----HHhhhhcc-----
Q psy6404 135 L-VKSFLFYSPQIESLKRWLIFRQ---RSGFQGRPNK--PVDT-----CY-----TFWIGASL----SILNAATW----- 189 (361)
Q Consensus 135 ~-v~~~~~~~~~~~~~~~~l~~~Q---dGgF~~~~~~--~~D~-----~~-----ty~a~~~L----~ll~~~~~----- 189 (361)
. .+. .....++++++||+..| ||.+. +++. ...+ +- +.++..+. .++..-..
T Consensus 237 ~~~~~--~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~ 313 (408)
T 1r76_A 237 PAIRT--RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVK 313 (408)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHH
T ss_pred hhhhh--hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHH
Confidence 0 000 01235688999999888 78876 4321 0111 11 22332222 22222111
Q ss_pred ccHHHHHHHHHhccCCCCCCCC
Q psy6404 190 IDEERLLLSVLDTQHMTGGLSK 211 (361)
Q Consensus 190 ~~~~~~~~~I~scQ~~dGGf~~ 211 (361)
..++++++||.++|+.||+|-.
T Consensus 314 ~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 314 QAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHHhhcCCCceee
Confidence 1378999999999999999874
No 27
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.20 E-value=2.9e-05 Score=87.35 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCC----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHH
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPC----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWL 153 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l 153 (361)
.++.+++++++|++||||+.++. ..++...|-+++-.|......-. .+...++++++||
T Consensus 985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~-----------------v~~~~l~~a~~wL 1047 (1451)
T 4acq_A 985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIF-----------------IDEAHITQALIWL 1047 (1451)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSC-----------------CCTHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcc-----------------cCHHHHHHHHHHH
Confidence 45678999999999999998864 34677778888888877665311 1334688999999
Q ss_pred HHhc--CCccccC--C------CC-CCCccchhHHHHHHHHhhhh-ccccHHHHHHHHHhc
Q psy6404 154 IFRQ--RSGFQGR--P------NK-PVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDT 202 (361)
Q Consensus 154 ~~~Q--dGgF~~~--~------~~-~~D~~~ty~a~~~L~ll~~~-~~~~~~~~~~~I~sc 202 (361)
..+| ||+|... . ++ +.++..|..++.+|...+.. ....++++++||.++
T Consensus 1048 ~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1048 SQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred HhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 9888 9999742 1 11 23444465666666655532 123367899999976
No 28
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.08 E-value=3.7e-06 Score=79.37 Aligned_cols=169 Identities=11% Similarity=0.014 Sum_probs=92.5
Q ss_pred HHHHHHhccCCCCcccccCC------------CCCCchhHHHHHHHHHHHhcCC-----CcccHHHHHHHHHhcCCCCCC
Q psy6404 32 ISTSLRSFTTPCFSFKCTLA------------DGDCDMRFVFCACSICYILDDW-----SGMDRARCLEFIFRSLSYDGA 94 (361)
Q Consensus 32 ~~~~L~~~Q~~dG~f~~~~~------------~~~~d~~~ty~al~~l~lL~~~-----~~~~~~~~i~~i~~~q~~dGG 94 (361)
+.+-|...|+++|||.-... ....|...|...+..|.-+... ...-.+++++||+++|.+|||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 46677778999999976421 0113444455555554433211 123367899999999999999
Q ss_pred CCCCC-C---CccCch----hhHHHHHHHHHhccc-cccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc--CCcccc
Q psy6404 95 FGQGP-C---LESHGG----STYCALASLALMNKL-DTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQG 163 (361)
Q Consensus 95 F~~~p-~---~~sh~~----~Ty~Al~sL~llg~~-~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q--dGgF~~ 163 (361)
|+++- . ...|+. .|-.+|..|..++.. .... .+.|++.-. ......++++++||+..| +||+.+
T Consensus 116 WpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~---~~~~~~~~~--~~~~~av~Rgid~Llk~Qe~dggw~g 190 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFD---TDVFSDNDR--TRFKTAVTKGTDYILKAQWKQNGVLT 190 (332)
T ss_dssp CBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSC---STTSCHHHH--HHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred ccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCcc---ccccccchh--hhhHHHHHHHHHHHHHhhCccCCCcC
Confidence 98872 1 122332 244555555555421 0000 000000000 001235789999999999 999888
Q ss_pred CCCCC--CCccc----------hhHH---HHHHHHhhhhccc-----cHHHHHHHHHhccCC
Q psy6404 164 RPNKP--VDTCY----------TFWI---GASLSILNAATWI-----DEERLLLSVLDTQHM 205 (361)
Q Consensus 164 ~~~~~--~D~~~----------ty~a---~~~L~ll~~~~~~-----~~~~~~~~I~scQ~~ 205 (361)
+++.. ..+.. +.++ +.++..|-..+.. .++++++|+.++|++
T Consensus 191 ~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 191 VWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp CCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred eeccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 76532 12222 3332 2232223222211 378899999999995
No 29
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.97 E-value=0.0004 Score=73.38 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=70.1
Q ss_pred HHHHHHHHHccCCC--CCChhhHHHHHHH-------HHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---Ccc
Q psy6404 9 LETAVEVLEAVPPG--VLALVYRLQISTS-------LRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGM 76 (361)
Q Consensus 9 t~~al~~L~~L~g~--~l~~~~~~~~~~~-------L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~ 76 (361)
+.+++..|... +. .++...+++..++ +.+.|++||||+... +.+++++.|-+++..+...... ...
T Consensus 342 ~i~v~~yl~~t-~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~-~~~~s~wLTAyV~~~l~~A~~~i~id~~ 419 (767)
T 4fxk_B 342 TLAASRYLDKT-EQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWL-SRDSSTWLTAFVLKVLSLAQEQVGGSPE 419 (767)
T ss_dssp HHHHHHHHHHT-CTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSS-SSCBCHHHHHHHHHHHHHTCSSSSCCHH
T ss_pred hhhHHHHHHhh-hhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC-CCCCCchhHHHHHHHHHHHHhhcCcchH
Confidence 44555556555 22 1333334444444 455799999999873 4567899998999888877643 334
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCC------------CCccCchhhHHHHHHHHHhc
Q psy6404 77 DRARCLEFIFRSLSYDGAFGQGP------------CLESHGGSTYCALASLALMN 119 (361)
Q Consensus 77 ~~~~~i~~i~~~q~~dGGF~~~p------------~~~sh~~~Ty~Al~sL~llg 119 (361)
...+++.|+.+.|.+||.|...- +.+..+..|.+.+.+|.-.+
T Consensus 420 ~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~ 474 (767)
T 4fxk_B 420 KLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGL 474 (767)
T ss_dssp HHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcC
Confidence 57788999999999999985321 11223455666666665433
No 30
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.96 E-value=0.00037 Score=79.62 Aligned_cols=202 Identities=11% Similarity=0.012 Sum_probs=111.6
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc--
Q psy6404 81 CLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ-- 157 (361)
Q Consensus 81 ~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q-- 157 (361)
.++-+++.|++||||+.+++.+++.+.|-+++-.|..+..... .+...+.++++||.. +|
T Consensus 1051 g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~-----------------v~~~~l~~a~~~L~~~~q~~ 1113 (1661)
T 2b39_A 1051 GYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIA-----------------IDSKDLCETVKWLILEKQKP 1113 (1661)
T ss_dssp HHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSC-----------------CCHHHHHHHHHHHHHHTBCT
T ss_pred HHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhccc-----------------CCHHHHHHHHHHhhHhhCCC
Confidence 4455678999999999998877888889888888887765322 133467899999995 77
Q ss_pred CCccccCC--------CC-----CCCccchhHHHHHHHHhhhh-----c--cccHHHHHHHHHhccCCCCCCCCCCCCCC
Q psy6404 158 RSGFQGRP--------NK-----PVDTCYTFWIGASLSILNAA-----T--WIDEERLLLSVLDTQHMTGGLSKWSDTQA 217 (361)
Q Consensus 158 dGgF~~~~--------~~-----~~D~~~ty~a~~~L~ll~~~-----~--~~~~~~~~~~I~scQ~~dGGf~~~p~~~s 217 (361)
+|.|.... ++ +.+...|.+++.+|.-.+.. + ...++++.+||.+.... + ... -
T Consensus 1114 ~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~---~~~-y 1186 (1661)
T 2b39_A 1114 DGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L---RRP-Y 1186 (1661)
T ss_dssp TSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C---CSH-H
T ss_pred CCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c---CCH-H
Confidence 88885321 11 11444444555555443321 0 12346788999875332 0 000 0
Q ss_pred chhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCCCCcccccch----HHHHHHHhhccCcccHHHHHHHHHh
Q psy6404 218 DILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW----IGASLSILNSATWIDEERLLLSVLD 293 (361)
Q Consensus 218 ~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK~~D~CYsfW----~~a~L~~L~~~~~~~~~~~~~~il~ 293 (361)
..+.+.+|++.. .. . .+.++++|.++..+|-.-+..+. .+.- ..+.|.++..........+.+||..
T Consensus 1187 ~~A~layAL~l~-g~--~--a~~~l~~L~~~~~~~~~W~~~~~----~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~ 1257 (1661)
T 2b39_A 1187 TVAIAAYALALL-GK--L--EGDRLTKFLNTAKEKNRWEEPNQ----KLYNVEATSYALLALLARKDYDTTPPVVRWLNE 1257 (1661)
T ss_dssp HHHHHHHHHHHT-TC--C--CHHHHHHHHHHSBTTTBCCCSSC----HHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CC--c--HHHHHHHHHhhccCCCCCCCCCC----CcchHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Confidence 011222333322 21 1 35566777665432210000000 0001 1233344433333344678899998
Q ss_pred ccCCCCCcCCCCCCCCChHHHHHHHHHhc
Q psy6404 294 TQHMTGGLSKWSDTQADILHTYLEAMSHA 322 (361)
Q Consensus 294 ~Q~~~GGf~~~p~~~~D~~hT~~a~~sl~ 322 (361)
.|+..|||... .-|.+|+.+|+
T Consensus 1258 qr~~~gg~~ST-------qdT~~Al~AL~ 1279 (1661)
T 2b39_A 1258 QRYYGGGYGST-------QATFMVFQALA 1279 (1661)
T ss_dssp CCTBTTBBCSH-------HHHHHHHHHHH
T ss_pred cccCCCCcccc-------hHHHHHHHHHH
Confidence 88888999863 55666665443
No 31
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.87 E-value=0.00018 Score=82.24 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred HHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCCCC-C-------C---
Q psy6404 36 LRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFGQG-P-------C--- 100 (361)
Q Consensus 36 L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~~~-p-------~--- 100 (361)
+...|++||+|+... +.+.++|.|-+++..+..+... +..-.+++++||.+ .|++||.|... + +
T Consensus 1055 ~l~~q~~dGsfs~w~-~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~ 1133 (1661)
T 2b39_A 1055 QLAFRQKSSAYAAFQ-YRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFR 1133 (1661)
T ss_dssp HHTTBCTTSCBCSST-TSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTT
T ss_pred HHHhhcCCCCccccC-CCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCcc
Confidence 445799999999874 4567899999999888877643 23346889999995 99999998532 1 1
Q ss_pred --CccCchhhHHHHHHHHHhcccc--ccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccCCCCCCCccchhH
Q psy6404 101 --LESHGGSTYCALASLALMNKLD--TLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFW 176 (361)
Q Consensus 101 --~~sh~~~Ty~Al~sL~llg~~~--~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~~~~~~D~~~ty~ 176 (361)
.++++..|..++.+|.-.+... ...+ ....+.++++||..+-+. ..+....-.
T Consensus 1134 ~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~---------------~~~~i~~a~~yL~~~~~~--------~~~~y~~A~ 1190 (1661)
T 2b39_A 1134 DTREKDVSLTAFVLIALHEAKDICEAQVNS---------------LGRSIAKAGDFLENHYRE--------LRRPYTVAI 1190 (1661)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTTTTTTCSS---------------HHHHHHHHHHHHHHHTTT--------CCSHHHHHH
T ss_pred ccccCccccHHHHHHHHHhccccccccCcc---------------hhHHHHHHHHHHHHhhhc--------cCCHHHHHH
Confidence 1124555666666665544321 0000 023567788998754211 011111112
Q ss_pred HHHHHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC-CchhhhhhhhhhcccccchhhHHHHHHHHHHhhc--CCC
Q psy6404 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR--SGF 253 (361)
Q Consensus 177 a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~--gGF 253 (361)
+..+|.+.+.. .+.+++.|.+... +|.+-..++.. .+.-.|.+||.++...-......++++||.+.|. |||
T Consensus 1191 layAL~l~g~~----a~~~l~~L~~~~~-~~~~W~~~~~~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~qr~~~gg~ 1265 (1661)
T 2b39_A 1191 AAYALALLGKL----EGDRLTKFLNTAK-EKNRWEEPNQKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGY 1265 (1661)
T ss_dssp HHHHHHHTTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHHCCTBTTBB
T ss_pred HHHHHHHcCCc----HHHHHHHHHhhcc-CCCCCCCCCCCcchHHHHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCc
Confidence 23344444432 4555666665443 33321222211 1344667777776432223346788999988653 666
Q ss_pred CCCCCCCCcccccchHHH
Q psy6404 254 QGRPNKPVDTCYTFWIGA 271 (361)
Q Consensus 254 ~GR~nK~~D~CYsfW~~a 271 (361)
..- -||.+...+++
T Consensus 1266 ~ST----qdT~~Al~AL~ 1279 (1661)
T 2b39_A 1266 GST----QATFMVFQALA 1279 (1661)
T ss_dssp CSH----HHHHHHHHHHH
T ss_pred ccc----hHHHHHHHHHH
Confidence 542 45544444333
No 32
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.67 E-value=0.00034 Score=79.93 Aligned_cols=214 Identities=12% Similarity=0.083 Sum_probs=117.8
Q ss_pred hHHHHHHHH-------HhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC---CcccHHHHHHHHHh-cCCCCCCCC
Q psy6404 28 YRLQISTSL-------RSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW---SGMDRARCLEFIFR-SLSYDGAFG 96 (361)
Q Consensus 28 ~~~~~~~~L-------~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~---~~~~~~~~i~~i~~-~q~~dGGF~ 96 (361)
.+++.++++ ...|++||+|+.. .+...++|.|-+++..+..+... +..-.+++++||.+ .|++||.|.
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w-~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVW-KGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFK 1119 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSS-SSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccc-CCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCccc
Confidence 355565554 3578999999987 45567899999999888876532 33446789999999 999999985
Q ss_pred CCC--------CC------ccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccc
Q psy6404 97 QGP--------CL------ESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQ 162 (361)
Q Consensus 97 ~~p--------~~------~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~ 162 (361)
... ++ ++++..|.+++.+|.-.+......+ ....+.++++||..+-+.
T Consensus 1120 ~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~---------------~~~~i~~a~~yL~~~~~~--- 1181 (1676)
T 3cu7_A 1120 ENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK---------------IDTALIKADNFLLENTLP--- 1181 (1676)
T ss_dssp CCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHH---------------HHHHHHHHHHHHHHHHSS---
T ss_pred CCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcc---------------cHHHHHHHHHHHHHhhhc---
Confidence 321 10 0134445555555544332100000 012466788888654221
Q ss_pred cCCCCCCCccchh-HHHHHHHHhhhhccccHHHHHHHHHhccCCCCCCC---C--CCC------C---C--Cchhhhhhh
Q psy6404 163 GRPNKPVDTCYTF-WIGASLSILNAATWIDEERLLLSVLDTQHMTGGLS---K--WSD------T---Q--ADILHTYLG 225 (361)
Q Consensus 163 ~~~~~~~D~~~ty-~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~---~--~p~------~---~--s~~~~T~~a 225 (361)
..+. |+- .+..+|.+.+... ...+.+.+.|.+....+|+.+ + .+. . . .+.-.|.+|
T Consensus 1182 -----~~~~-y~~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~taya 1254 (1676)
T 3cu7_A 1182 -----AQST-FTLAISAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYA 1254 (1676)
T ss_dssp -----CSCH-HHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHH
T ss_pred -----cCCH-HHHHHHHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHH
Confidence 0111 221 1222344444321 114566677776655444421 1 110 0 1 133356777
Q ss_pred hhhcccccchhhHHHHHHHHHHhhc--CCCCCCCCCCCcccccchHHH
Q psy6404 226 EFFVRPRIIKTQIESLKRWLIFRQR--SGFQGRPNKPVDTCYTFWIGA 271 (361)
Q Consensus 226 la~L~~~~~~~~~~~l~~WL~~rQ~--gGF~GR~nK~~D~CYsfW~~a 271 (361)
|.++..........++++||.+.|. |||..- -||.+...+++
T Consensus 1255 Llall~~~~~~~~~~iv~wL~~qr~~~Gg~~ST----QdT~~Al~AL~ 1298 (1676)
T 3cu7_A 1255 LLTSLNLKDINYVNPVIKWLSEEQRYGGGFYST----QDTINAIEGLT 1298 (1676)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCSSSCCSTT----TTHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCCCcccc----HHHHHHHHHHH
Confidence 7776433334457788999987654 677653 56654444333
No 33
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.64 E-value=0.00062 Score=77.86 Aligned_cols=191 Identities=15% Similarity=-0.030 Sum_probs=104.2
Q ss_pred HHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc--CCc
Q psy6404 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ--RSG 160 (361)
Q Consensus 84 ~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q--dGg 160 (361)
-+++.|++||||+.+++.+++.+.|-+++-.|..+...-. .+...+.++++||.. +| +|.
T Consensus 1055 r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~-----------------v~~~~l~~a~~~L~~~~q~~~g~ 1117 (1676)
T 3cu7_A 1055 SIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVE-----------------QNQNSICNSLLWLVENYQLDNGS 1117 (1676)
T ss_dssp HGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSC-----------------CCHHHHHHHHHHHHHHSBCTTSC
T ss_pred HHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHHhhCCCCCc
Confidence 3567899999999997777888889888888877765322 133467889999998 77 888
Q ss_pred cccCC---CCC-----------CCccchhHHHHHHHHhhhh-----ccccHHHHHHHHHhccCCCCCCCCCCCCCCchhh
Q psy6404 161 FQGRP---NKP-----------VDTCYTFWIGASLSILNAA-----TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH 221 (361)
Q Consensus 161 F~~~~---~~~-----------~D~~~ty~a~~~L~ll~~~-----~~~~~~~~~~~I~scQ~~dGGf~~~p~~~s~~~~ 221 (361)
|.... +.+ .+...|.+++.+|.-.+.. .....+++.+||.+.... + .+...
T Consensus 1118 f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~ 1187 (1676)
T 3cu7_A 1118 FKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFT 1187 (1676)
T ss_dssp BCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHH
T ss_pred ccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHH
Confidence 86421 110 1233344444444333321 012356788999775331 0 11111
Q ss_pred hhhhhh--hcccccchh-hHHHHHHHHHHhhc--CC-----CCCCCCCCCcccccc-h---------HHHHHHHhhccCc
Q psy6404 222 TYLGEF--FVRPRIIKT-QIESLKRWLIFRQR--SG-----FQGRPNKPVDTCYTF-W---------IGASLSILNSATW 281 (361)
Q Consensus 222 T~~ala--~L~~~~~~~-~~~~l~~WL~~rQ~--gG-----F~GR~nK~~D~CYsf-W---------~~a~L~~L~~~~~ 281 (361)
.|++ +|...-... ..+++++.|.++.. ++ +=..+.+..+ -|+| | ..+.|.++.....
T Consensus 1188 --~A~lA~Al~l~g~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~ve~tayaLlall~~~~~ 1264 (1676)
T 3cu7_A 1188 --LAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKD-SSVPNTGTARMVETTAYALLTSLNLKDI 1264 (1676)
T ss_dssp --HHHHHHHHTTSCTTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCS-SCCCSCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHHHHhcCCchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCcc-ccccCCCccchHHHHHHHHHHHHhcCCh
Confidence 1222 122211222 26677788876543 32 2111111111 1121 1 1233444444332
Q ss_pred ccHHHHHHHHHhccCCCCCcCCC
Q psy6404 282 IDEERLLLSVLDTQHMTGGLSKW 304 (361)
Q Consensus 282 ~~~~~~~~~il~~Q~~~GGf~~~ 304 (361)
.+...+..||...|+..|||...
T Consensus 1265 ~~~~~iv~wL~~qr~~~Gg~~ST 1287 (1676)
T 3cu7_A 1265 NYVNPVIKWLSEEQRYGGGFYST 1287 (1676)
T ss_dssp HHHHHHHHHHHHHSCSSSCCSTT
T ss_pred hHHHHHHHHHHhccCCCCCcccc
Confidence 23356789998888888999874
No 34
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.61 E-value=9.2e-05 Score=71.82 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=58.6
Q ss_pred CCCchhHHHHHHHHHHccCCCCCC-------hhhHHHHHHHHHhccCCCCcccccCCCCC--------CchhHHHHHHHH
Q psy6404 2 STAEEAVLETAVEVLEAVPPGVLA-------LVYRLQISTSLRSFTTPCFSFKCTLADGD--------CDMRFVFCACSI 66 (361)
Q Consensus 2 ~~~~~~~t~~al~~L~~L~g~~l~-------~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--------~d~~~ty~al~~ 66 (361)
+|.|..+|...|..|.-+ ....+ ....++.++||..+|.++|||+.+.+... +|=. +--.|..
T Consensus 144 ~T~DnddTa~vl~aL~rv-~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDv-t~rvle~ 221 (408)
T 1r76_A 144 GTIDNDATVTEIRFLAQV-VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA-LVHVAEL 221 (408)
T ss_dssp SBCGGGTTHHHHHHHHHH-HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH-HHHHHHH
T ss_pred CCCCCchHHHHHHHHHHH-HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHH-HHHHHHH
Confidence 577888999999999887 22101 12246889999999999999987744221 2211 1122222
Q ss_pred HHHhcC------C--------CcccHHHHHHHHHhcCCC-CCCC
Q psy6404 67 CYILDD------W--------SGMDRARCLEFIFRSLSY-DGAF 95 (361)
Q Consensus 67 l~lL~~------~--------~~~~~~~~i~~i~~~q~~-dGGF 95 (361)
|..++. + ...-.+++++||++.|.+ ||..
T Consensus 222 L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw 265 (408)
T 1r76_A 222 LSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKR 265 (408)
T ss_dssp HHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEE
T ss_pred HHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCcc
Confidence 222221 0 123467899999999999 8874
No 35
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.52 E-value=0.0023 Score=67.54 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhc
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ 157 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~Q 157 (361)
.+..++-+++.|++||||+.+++..++...|-+++-+|........ .+...+..++.||..+|
T Consensus 370 l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~-----------------id~~~i~~a~~wL~~~Q 432 (767)
T 4fxk_B 370 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVG-----------------GSPEKLQETSNWLLSQQ 432 (767)
T ss_dssp HHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSS-----------------CCHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcC-----------------cchHHHHHHHHHHHHhh
Confidence 3445666788999999999998888888888888888887765422 23446788999999888
Q ss_pred --CCcccc
Q psy6404 158 --RSGFQG 163 (361)
Q Consensus 158 --dGgF~~ 163 (361)
+|+|..
T Consensus 433 ~~~G~f~e 440 (767)
T 4fxk_B 433 QADGSFQD 440 (767)
T ss_dssp CTTSCBCC
T ss_pred hhcccchh
Confidence 888863
No 36
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.51 E-value=0.0016 Score=68.98 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=67.6
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
|...|..||.|..+| ..|++++..-. + +++.+||..-...+=.|.|+- +.|.--.-|.+-+|.-||
T Consensus 246 ~~~~q~~~GS~~~SP------saTAa~l~~~~------d-~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG 312 (817)
T 3sdr_A 246 IMEVQSQDGSFLSSP------ASTACVFMHTG------D-AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLG 312 (817)
T ss_dssp GGGGCCTTSCBTTBH------HHHHHHHHHHC------C-HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCCCcccCH------HHHHHHHHhCC------C-hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcC
Confidence 677888888888876 46777665422 1 466777754322111146665 666644559999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCCCcCC-CCCCCCChHHHHHHH--HHhcc
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTGGLSK-WSDTQADILHTYLEA--MSHAS 323 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~-~p~~~~D~~hT~~a~--~sl~~ 323 (361)
-...+.. +.+.+.|..+-... |+.- .++..+|++.|.++. +-+.+
T Consensus 313 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~G 362 (817)
T 3sdr_A 313 IYRHFEKEIKEALDYVYRHWNER-GIGWGRLNPIADLETTALGFRLLRLHR 362 (817)
T ss_dssp CGGGGHHHHHHHHHHHHHHCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHHHHHHHHHHHHcC
Confidence 7654444 35566665443332 3332 244468999999875 44444
No 37
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.35 E-value=2.9e-05 Score=88.12 Aligned_cols=196 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHH-------hccCCCCcccccCCCCCCchhHHHHHHHHHHHhcC----CCcccHHHHHHHHHh-cCCCCCCCC
Q psy6404 29 RLQISTSLR-------SFTTPCFSFKCTLADGDCDMRFVFCACSICYILDD----WSGMDRARCLEFIFR-SLSYDGAFG 96 (361)
Q Consensus 29 ~~~~~~~L~-------~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~----~~~~~~~~~i~~i~~-~q~~dGGF~ 96 (361)
+++.+++|+ +.|++||||+... +.+.++|.|-+++..+..... .+..-.+++++||.+ +|++||.|.
T Consensus 1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~-~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~ 1103 (1642)
T 3prx_B 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFT-NRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFK 1103 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeecCC-CCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccc
Confidence 445555544 4788999999873 345788888888877776543 333457889999998 899999994
Q ss_pred CCC--------C----CccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHHhcCCccccC
Q psy6404 97 QGP--------C----LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGR 164 (361)
Q Consensus 97 ~~p--------~----~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~~QdGgF~~~ 164 (361)
... | .+.++..|-+.+.+|.-.+..... . +. -....+++++.||...-+.
T Consensus 1104 e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~---~-------~~---~~~~~i~~a~~~L~~~~~~----- 1165 (1642)
T 3prx_B 1104 ENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICND---Y-------VN---SLDSSIKKATNYLLKKYEK----- 1165 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccchhccCCccCCCCcccchHHHHHHHHhccccccc---c-------cc---cchHHHHHHHHHHHHhhhc-----
Confidence 421 1 133455565555544333221000 0 00 0012467788888643111
Q ss_pred CCCCCCccchhH-HHH--HHHHhhhhccccHHHHHHHHHhccCCCCCCCCCCCCC-CchhhhhhhhhhcccccchhhHHH
Q psy6404 165 PNKPVDTCYTFW-IGA--SLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQ-ADILHTYLGEFFVRPRIIKTQIES 240 (361)
Q Consensus 165 ~~~~~D~~~ty~-a~~--~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf~~~p~~~-s~~~~T~~ala~L~~~~~~~~~~~ 240 (361)
....|. |+. +|.+.+.. +.+.+..+... ++-+-..|+.. .+.-.|.+||.++...-.......
T Consensus 1166 ------~~~~Y~~Ai~aYAl~l~~~~---~~~~l~~l~~~----~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~~~a~~ 1232 (1642)
T 3prx_B 1166 ------LQRPYTTALTAYALAAADQL---NDDRVLMAAST----GRDHWEEYNAHTHNIEGTSYALLALLKMKKFDQTGP 1232 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhc----CCCCCCCCCCchHHHHHHHHHHHHHhccCchhhHHH
Confidence 111221 222 33334432 11112122111 11111123222 355678899888754323345678
Q ss_pred HHHHHHHhhc--CCCCCC
Q psy6404 241 LKRWLIFRQR--SGFQGR 256 (361)
Q Consensus 241 l~~WL~~rQ~--gGF~GR 256 (361)
.++||.++|. |||..-
T Consensus 1233 iv~WL~~qr~~~Ggf~ST 1250 (1642)
T 3prx_B 1233 IVRWLTDQNFYGETYGQT 1250 (1642)
T ss_dssp ------------------
T ss_pred HHHHHHHhccCCCcccCc
Confidence 8999998765 888763
No 38
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.30 E-value=1.7e-05 Score=74.89 Aligned_cols=93 Identities=9% Similarity=-0.075 Sum_probs=60.1
Q ss_pred CCCchhHHHHHHHHHHccCCCCC-C---hhhHHHHHHHHHhccCCCCcccccCCCCC--------CchhHHHHHHHHHHH
Q psy6404 2 STAEEAVLETAVEVLEAVPPGVL-A---LVYRLQISTSLRSFTTPCFSFKCTLADGD--------CDMRFVFCACSICYI 69 (361)
Q Consensus 2 ~~~~~~~t~~al~~L~~L~g~~l-~---~~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--------~d~~~ty~al~~l~l 69 (361)
+|.|..+|...|..|.-+ ...- + ....++.++||..+|.++|||+.+.+... +|= .+-=.|..|..
T Consensus 69 ~t~DnddTa~vl~~Larv-~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDD-vtarvLelL~~ 146 (332)
T 1gxm_A 69 GTIDNGATITEMVFLAEV-YKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDN-GMAYALTVLDF 146 (332)
T ss_dssp EECGGGTTHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGG-HHHHHHHHHHH
T ss_pred CCccCccHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchH-HHHHHHHHHHH
Confidence 477888999999999876 2100 1 12246889999999999999998743221 221 12223333333
Q ss_pred hcC----C------------CcccHHHHHHHHHhcCCCCCCCC
Q psy6404 70 LDD----W------------SGMDRARCLEFIFRSLSYDGAFG 96 (361)
Q Consensus 70 L~~----~------------~~~~~~~~i~~i~~~q~~dGGF~ 96 (361)
++. + .....+++++||++.|-++||.-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~ 189 (332)
T 1gxm_A 147 AANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVL 189 (332)
T ss_dssp HHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEE
T ss_pred HHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCc
Confidence 321 1 11336789999999999999853
No 39
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.28 E-value=0.0032 Score=66.14 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=68.5
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
|...|..||+|..+| ..|++++..-. -+++.+||.+-...+=.|.|+- +.|.--.-|.+-+|.-||
T Consensus 194 ~~~~~~~~GS~~~SP------saTAa~l~~~~-------d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG 260 (764)
T 3p5p_A 194 IMRFQSKDGSFLSSP------ASTACVLMNTG-------DEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLG 260 (764)
T ss_dssp GGGGBCTTSCBTTBH------HHHHHHHHHHC-------CHHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCCCcccCh------HHHHHHHHhCC-------ChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcC
Confidence 677888889888877 46777765422 1466777754322111156665 666644559999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCCCcCC-CCCCCCChHHHHHHH--HHhccc
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTGGLSK-WSDTQADILHTYLEA--MSHASR 324 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~-~p~~~~D~~hT~~a~--~sl~~~ 324 (361)
-...+.. +.+.+.|..+-... |+.- .++..+|++.|.++. +-+.+.
T Consensus 261 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy 311 (764)
T 3p5p_A 261 IGRHFKQEIKGALDYVYRHWSER-GIGWGRDSLVPDLNTTALGLRTLRMHGY 311 (764)
T ss_dssp CGGGGHHHHHHHHHHHHHTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred CccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHHHHHHHHHHHhcCC
Confidence 7654444 35666665543332 3332 234468999999875 444443
No 40
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.21 E-value=0.0037 Score=60.86 Aligned_cols=140 Identities=6% Similarity=-0.097 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcC
Q psy6404 62 CACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141 (361)
Q Consensus 62 ~al~~l~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~ 141 (361)
+++.+|++--.-. .-..+.+..+...|+ +++|..+ ...++-.|-.|+.+|..++..... +... +.+
T Consensus 139 ~sL~vLALC~~g~-~v~~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~-~~~~----~~i----- 204 (414)
T 2bb6_A 139 YSLGILALCVHQK-RVHDSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLN-PKQR----NRI----- 204 (414)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSC-GGGH----HHH-----
T ss_pred HHHHHHHHHHcCC-CccHHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCC-cchH----HHH-----
Confidence 4555555532211 224456666666665 4566422 223577888888888888752211 1100 000
Q ss_pred ChHhHHHHHHHHHHhc--CCccccCCCCCCCccchhHHHHHHHHhhhhcc---ccHHHHHHHHHhccCCCCCCCCCCCCC
Q psy6404 142 YSPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATW---IDEERLLLSVLDTQHMTGGLSKWSDTQ 216 (361)
Q Consensus 142 ~~~~~~~~~~~l~~~Q--dGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~---~~~~~~~~~I~scQ~~dGGf~~~p~~~ 216 (361)
..-++.++++|...| ||+|. +...|-.|+.+|...+.... .+..+++++|++ |..||+|+
T Consensus 205 -~~al~~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~------ 269 (414)
T 2bb6_A 205 -NLALKRVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ------ 269 (414)
T ss_dssp -HHHHHHHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC------
T ss_pred -HHHHHHHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC------
Confidence 112334447777666 89994 45668889999988765211 256779999999 99999997
Q ss_pred Cchhhhhhhhhhccc
Q psy6404 217 ADILHTYLGEFFVRP 231 (361)
Q Consensus 217 s~~~~T~~ala~L~~ 231 (361)
+...|+-++-+|..
T Consensus 270 -np~ataQ~lpaL~g 283 (414)
T 2bb6_A 270 -NPLMISQLLPVLNQ 283 (414)
T ss_dssp -SHHHHHHHHHHTTT
T ss_pred -ChHHHHHHHHHhcC
Confidence 44678888877753
No 41
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.18 E-value=0.017 Score=60.93 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
|+..|..||.|..+| ..|++++.--. + +++.+||.+-+..+=.|-|+- +.|.--.-|.+-+|.-||
T Consensus 218 v~~~q~~~GS~~~SP------saTAa~l~~~~------d-~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLG 284 (785)
T 3s9v_A 218 IMKLQSKDGSFLSSP------ASTAAVFMRTG------N-KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLG 284 (785)
T ss_dssp HHTTCCTTSCBTTBH------HHHHHHHHHHC------C-HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred HHhccCCCCCcccCH------HHHHHHHHhCC------C-hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcC
Confidence 557888899998887 46777765321 1 466777755332111256665 566644459999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCCCcCCCCC-CCCChHHHHHHH--HHhccc
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSD-TQADILHTYLEA--MSHASR 324 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~-~~~D~~hT~~a~--~sl~~~ 324 (361)
-...+.. +.+.++|..+-... |++-.++ ..+|++.|.++. +-+.+.
T Consensus 285 i~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy 335 (785)
T 3s9v_A 285 IDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDIDDTAMGLRILRLHGY 335 (785)
T ss_dssp CGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred CccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHHHHHHHHHHHHhcCC
Confidence 7654443 35666665443322 3433332 357999999874 444443
No 42
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.98 E-value=0.025 Score=59.00 Aligned_cols=112 Identities=20% Similarity=0.138 Sum_probs=67.3
Q ss_pred HHhccCCCCCCCCCCCCCCchhhhhhhhhhcccccchhhHHHHHHHHHHhhcCCCCCCCCC-CCcccccchHHHHHHHhh
Q psy6404 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNK-PVDTCYTFWIGASLSILN 277 (361)
Q Consensus 199 I~scQ~~dGGf~~~p~~~s~~~~T~~ala~L~~~~~~~~~~~l~~WL~~rQ~gGF~GR~nK-~~D~CYsfW~~a~L~~L~ 277 (361)
+..-|..||.|..+| ..|++++..- .-+++.++|.+-...+-.|-|+- +.|.--.-|.+-+|.-||
T Consensus 193 ~~~~q~~~GS~~~SP------saTAa~l~~~-------~d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLG 259 (727)
T 3pya_A 193 LLKLQSQDGSFLFSP------SSTAFAFMQT-------RDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLG 259 (727)
T ss_dssp HGGGCCTTSSBTTBH------HHHHHHHHHH-------CCHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred HhcccCCCCCcccCH------HHHHHHHhcC-------CCHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcC
Confidence 345566788888776 4677766531 12466777765443233466765 677644459999999999
Q ss_pred ccCcccH--HHHHHHHHhccCCCCCcCCCCC-CCCChHHHHHHH--HHhccc
Q psy6404 278 SATWIDE--ERLLLSVLDTQHMTGGLSKWSD-TQADILHTYLEA--MSHASR 324 (361)
Q Consensus 278 ~~~~~~~--~~~~~~il~~Q~~~GGf~~~p~-~~~D~~hT~~a~--~sl~~~ 324 (361)
-...+.. +.+.+.|..+-... |+...++ ..+|++.|.++. +-+.+.
T Consensus 260 Is~hFe~EI~~~L~~i~~~~~~~-g~~~~~~~~~~DL~~tAL~FRLLRqhGy 310 (727)
T 3pya_A 260 ISRYFEEEIKECLDYVHRYWTDN-GICWARCSHVQDIDDTAMAFRLLRQHGY 310 (727)
T ss_dssp CGGGGHHHHHHHHHHHHHTCCTT-CCCSSSSCSCCCHHHHHHHHHHHHHTTC
T ss_pred CccccHHHHHHHHHHHHHHhhhc-CcccccCCCCCCHHHHHHHHHHHHhCCC
Confidence 7654444 35666665543322 3322232 368999999874 444443
No 43
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=96.97 E-value=0.0011 Score=64.63 Aligned_cols=97 Identities=10% Similarity=-0.127 Sum_probs=66.0
Q ss_pred CCCchhHHHHHHHHHHccCCCC-CChh---hHH----HHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhcCC
Q psy6404 2 STAEEAVLETAVEVLEAVPPGV-LALV---YRL----QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDW 73 (361)
Q Consensus 2 ~~~~~~~t~~al~~L~~L~g~~-l~~~---~~~----~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~~~ 73 (361)
++.++-.|..|+.+|.++ +++ ...- ..+ .++++|.+.|++||+|+. +..|-.|+.+|...+..
T Consensus 174 ~~~sVDT~AMA~lAL~C~-~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN--------~~ST~lA~QAL~~~~~~ 244 (414)
T 2bb6_A 174 DHVSVDTMAMAGMAFSCL-ELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGN--------VYSTPLALQLLMGSLRP 244 (414)
T ss_dssp TTTHHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSS--------TTTHHHHHHHHTTCSSC
T ss_pred CcccccHHHHHHHHHHHH-hhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccc--------hhhHHHHHHHHHhcCCC
Confidence 345788999999999999 542 2111 123 344788888999999963 22355666666555543
Q ss_pred Cc---ccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHH
Q psy6404 74 SG---MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL 115 (361)
Q Consensus 74 ~~---~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL 115 (361)
.. .+..+++++|++ |.+||+|. +...|.-++.+|
T Consensus 245 ~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lpaL 281 (414)
T 2bb6_A 245 SVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLPVL 281 (414)
T ss_dssp CHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHHHh
Confidence 22 367789999999 99999997 235666666644
No 44
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.23 E-value=0.00073 Score=76.72 Aligned_cols=107 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-hc-
Q psy6404 80 RCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-RQ- 157 (361)
Q Consensus 80 ~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~Q- 157 (361)
..++-+++.|++||||+.+.+.+++.+.|-+++-+|......-.. ++...+.++++||.. +|
T Consensus 1034 ~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~----------------Vd~~~l~~~~~wL~~~~Q~ 1097 (1642)
T 3prx_B 1034 TGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAG----------------ISHEIICGGVRWLILNRQQ 1097 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccC----------------CCHHHHHHHHHHHHhhccC
Confidence 444556779999999998877667777888887777665542110 123467889999986 67
Q ss_pred -CCccccCC--------C----CCCCccchhHHHHHHHHhhhh-------ccccHHHHHHHHHhc
Q psy6404 158 -RSGFQGRP--------N----KPVDTCYTFWIGASLSILNAA-------TWIDEERLLLSVLDT 202 (361)
Q Consensus 158 -dGgF~~~~--------~----~~~D~~~ty~a~~~L~ll~~~-------~~~~~~~~~~~I~sc 202 (361)
||+|.... + .+.++..|-.++.+|.-.+.. ....++++.+||.+.
T Consensus 1098 ~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1098 PDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 89996421 1 133444444444443322211 012457888898765
No 45
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=95.97 E-value=0.027 Score=54.50 Aligned_cols=96 Identities=13% Similarity=-0.062 Sum_probs=66.0
Q ss_pred CCchhHHHHHHHHHHccCCC----CCCh-------hhHHHHHHHHHhccCCCCcccccCCCCCCchhHHHHHHHHHHHhc
Q psy6404 3 TAEEAVLETAVEVLEAVPPG----VLAL-------VYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILD 71 (361)
Q Consensus 3 ~~~~~~t~~al~~L~~L~g~----~l~~-------~~~~~~~~~L~~~Q~~dG~f~~~~~~~~~d~~~ty~al~~l~lL~ 71 (361)
+-++-.+..|+.+|.++ .+ .... ...++++++|.+.|++||+|+ ++..|-.|+.+|...+
T Consensus 149 ~~sVDT~AMa~LAL~C~-~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG--------n~yST~LA~QAL~~~~ 219 (399)
T 2pmv_A 149 PFNVDTGAMATLALTCM-YNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG--------DIYSTGLAMQALSVTP 219 (399)
T ss_dssp CCCHHHHHHHHHHHHHH-HTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS--------SHHHHHHHHHHHHHCS
T ss_pred cccchHHHHHHHHHHHH-hhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc--------ccccHHHHHHHHHhcC
Confidence 45677888889999888 43 1111 113567888888899999995 3445556666666655
Q ss_pred CC--CcccHHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHH
Q psy6404 72 DW--SGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL 115 (361)
Q Consensus 72 ~~--~~~~~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL 115 (361)
.. ...+..++.+||++ |..||+|+ +...|.-.+-+|
T Consensus 220 ~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL 257 (399)
T 2pmv_A 220 EPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSL 257 (399)
T ss_dssp SCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHh
Confidence 31 22378999999999 99999997 345666666544
No 46
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=95.56 E-value=0.045 Score=52.92 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccCchhhHHHHHHHHHhccccccccchhhhhHhhhhhhcCChHhHHHHHHHHHH-h
Q psy6404 78 RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIF-R 156 (361)
Q Consensus 78 ~~~~i~~i~~~q~~dGGF~~~p~~~sh~~~Ty~Al~sL~llg~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~l~~-~ 156 (361)
.++++++|++.|++||+|| ++.+|--|+++|...+..+.. ..+..++++||.. .
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~------------------~W~c~~al~~l~~q~ 239 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKK------------------EWNCKKTTDMILNEI 239 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSS------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccc------------------cccHHHHHHHHHHHh
Confidence 5678889999999999997 589999999999998863211 1167788899886 2
Q ss_pred cCCccccCCCCCCCccchhHHHHHHHHhhhhccccHHHHHHHHHhccCCCCCC
Q psy6404 157 QRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGL 209 (361)
Q Consensus 157 QdGgF~~~~~~~~D~~~ty~a~~~L~ll~~~~~~~~~~~~~~I~scQ~~dGGf 209 (361)
++|+|. .| ..+..+|-.|...+..|+.. ..|+...+-+
T Consensus 240 ~~G~F~-np---------~~taQilPaL~~ktyldv~~-----~~C~~~~~~~ 277 (399)
T 2pmv_A 240 KQGKFH-NP---------MSIAQILPSLKGKTYLDVPQ-----VTCSPDHEVQ 277 (399)
T ss_dssp TTTTTC-SH---------HHHHHHHHHHTTCCGGGGGG-----CCBSCC----
T ss_pred hCCCcC-CH---------HHHHHHHHHhcCCCccCcCc-----CCCCCCcccc
Confidence 399996 11 23444555554334444332 4687776554
No 47
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=78.47 E-value=1.9 Score=44.92 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCC-C-chhhhhhhhhhccc-ccchhhHHHHHHHHHH
Q psy6404 192 EERLLLSVLDTQHMTGGLSKWSDTQ-A-DILHTYLGEFFVRP-RIIKTQIESLKRWLIF 247 (361)
Q Consensus 192 ~~~~~~~I~scQ~~dGGf~~~p~~~-s-~~~~T~~ala~L~~-~~~~~~~~~l~~WL~~ 247 (361)
...+++||++.|.+||+||...+.. - ....|..||.||+. ...+..+++.+.+|..
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fl~~ 110 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFPHQCNKGITFFRE 110 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4778999999999999999632211 1 35678888888864 3345567888888764
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=78.28 E-value=1.6 Score=45.90 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhccCCCCCCCCCCC-CCCc-hhhhhhhhhhccc-ccchhhHHHHHHHHHHh
Q psy6404 191 DEERLLLSVLDTQHMTGGLSKWSD-TQAD-ILHTYLGEFFVRP-RIIKTQIESLKRWLIFR 248 (361)
Q Consensus 191 ~~~~~~~~I~scQ~~dGGf~~~p~-~~s~-~~~T~~ala~L~~-~~~~~~~~~l~~WL~~r 248 (361)
-...+++||++.|.+||+||.... ..-| ...|..||.||+. ...+..+++.+.+|...
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQ 135 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 347899999999999999996432 2223 6788888888863 23345677888887643
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=77.45 E-value=2.1 Score=44.87 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=41.4
Q ss_pred cHHHHHHHHHhccCCCCCCCCCCCCC--Cchhhhhhhhhhccc-ccchhhHHHHHHHHHHh
Q psy6404 191 DEERLLLSVLDTQHMTGGLSKWSDTQ--ADILHTYLGEFFVRP-RIIKTQIESLKRWLIFR 248 (361)
Q Consensus 191 ~~~~~~~~I~scQ~~dGGf~~~p~~~--s~~~~T~~ala~L~~-~~~~~~~~~l~~WL~~r 248 (361)
-...+++||++.|.+||+||...... -....|..||.||+. ...+..+++.+.+|...
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGHSQVQQGAEFIAEN 114 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 35778999999999999999643211 135678888888853 23345778888887654
No 50
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=76.28 E-value=2.4 Score=44.80 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhccCCCCCCCCCCCC--CCchhhhhhhhhhccc-ccchhhHHHHHHHHHHh
Q psy6404 191 DEERLLLSVLDTQHMTGGLSKWSDT--QADILHTYLGEFFVRP-RIIKTQIESLKRWLIFR 248 (361)
Q Consensus 191 ~~~~~~~~I~scQ~~dGGf~~~p~~--~s~~~~T~~ala~L~~-~~~~~~~~~l~~WL~~r 248 (361)
-...+++||++.|.+||+||..... .-....|..||.||+. ...+..+++.+.+|...
T Consensus 102 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 102 QFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSN 162 (817)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 3478999999999999999964321 1135678888888853 23345677888887643
No 51
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=33.63 E-value=2.1e+02 Score=26.73 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC------CCCCCCCCCccCchhhHHHHHHHH
Q psy6404 58 RFVFCACSICYILDDWSGMDRARCLEFIFRSLSYD------GAFGQGPCLESHGGSTYCALASLA 116 (361)
Q Consensus 58 ~~ty~al~~l~lL~~~~~~~~~~~i~~i~~~q~~d------GGF~~~p~~~sh~~~Ty~Al~sL~ 116 (361)
...++|+.++..+..-+.+--+.+++-+...|.+| |||+.......|...-.-||.+..
T Consensus 282 S~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 282 SPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 34567777776664334566788899999888877 888876666666665555555443
No 52
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.64 E-value=1.9e+02 Score=27.97 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=50.4
Q ss_pred chhHHHHHHHHHHccCCCCCCh-----hhHHHHHHHHHhccCCCCcccccCCCCC--CchhHHHHHHHHHHHh-----cC
Q psy6404 5 EEAVLETAVEVLEAVPPGVLAL-----VYRLQISTSLRSFTTPCFSFKCTLADGD--CDMRFVFCACSICYIL-----DD 72 (361)
Q Consensus 5 ~~~~t~~al~~L~~L~g~~l~~-----~~~~~~~~~L~~~Q~~dG~f~~~~~~~~--~d~~~ty~al~~l~lL-----~~ 72 (361)
+-|.++.-+..|+.| +.+-+. -.-+++.+.+.+.|.++|.|...++..+ .+... .|+.+..++ +.
T Consensus 268 nGW~~~gl~~~l~~l-p~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSa--TAmfaygllkgvr~G~ 344 (445)
T 3k11_A 268 NGWALLTACELLDVL-PEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSA--TAIYVYCLAHAINKGW 344 (445)
T ss_dssp HHHHHHHHHHHHHHS-CTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHH--HHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHhc-ccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccH--HHHHHHHHHHHHHcCC
Confidence 456777778888888 332221 1134677788888999998875443222 23332 222222222 22
Q ss_pred CCc----ccHHHHHHHHHhcCCCCCCC
Q psy6404 73 WSG----MDRARCLEFIFRSLSYDGAF 95 (361)
Q Consensus 73 ~~~----~~~~~~i~~i~~~q~~dGGF 95 (361)
+.. .-.+++.+.|.++.++||-.
T Consensus 345 Ld~~~Y~~~A~ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 345 IDAIAYGPVAQLGWHAVAGKINEEGQV 371 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHTTBCTTSCB
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 221 23567888898888888854
Done!