RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6404
(361 letters)
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I
(GGTase-I)-like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-I s are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes PTases catalyze the carboxyl-terminal lipidation
of Ras, Rab, and several other cellular signal
transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-I ).
GGTase-I prenylates the cysteine in the terminal
sequence, "CAAX" when X is Leu or Phe. Substrates for
GTTase-I include the gamma subunit of neural G-proteins
and several Ras-related G-proteins. PTases are
heterodimeric with both alpha and beta subunits required
for catalytic activity.
Length = 307
Score = 214 bits (548), Expect = 2e-67
Identities = 92/188 (48%), Positives = 119/188 (63%), Gaps = 24/188 (12%)
Query: 45 SFKCTLAD--GDCDMRFVFCACSICYILDDWS--GMDRARCLEFIFRSLSYDGAFGQGPC 100
SF L G+ DMRF +CA +ICY+LDDWS +D+ + +++I S SYDG FGQGP
Sbjct: 130 SFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPG 189
Query: 101 LESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS- 159
LESHGGST+CA+ASL+L+ KL+ L +E LKRWL+ RQ S
Sbjct: 190 LESHGGSTFCAIASLSLLGKLEELS-----------------EKFLERLKRWLVHRQVSG 232
Query: 160 -GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQA 217
GF GRPNKP DTCY+FW+GASL +L+A ID E+ +L TQ + GG +K D+
Sbjct: 233 TGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHP 292
Query: 218 DILHTYLG 225
D LH+YLG
Sbjct: 293 DPLHSYLG 300
Score = 109 bits (274), Expect = 2e-27
Identities = 72/253 (28%), Positives = 108/253 (42%), Gaps = 47/253 (18%)
Query: 86 FRSLSYDGAFGQ-GPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSP 144
FR S G G + TY AL SL ++ L V
Sbjct: 72 FRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGD-----------DLSRVDR------ 114
Query: 145 QIESLKRWLIFRQRS--GFQGRPNKPVDT-----CYTFWIGASLS-ILNAATW--IDEER 194
+++ +L Q F + CY ++ +L+ + ID+E+
Sbjct: 115 --KAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCY---CAVAICYMLDDWSEEDIDKEK 169
Query: 195 LLLSVLDTQHMTGGLSKWSDTQADILHTY--------LGEFFVRPRIIKTQIESLKRWLI 246
L+ + +Q GG + ++ T+ LG+ +E LKRWL+
Sbjct: 170 LIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSE---KFLERLKRWLV 226
Query: 247 FRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQ-HMTGGLSK 303
RQ S GF GRPNKP DTCY+FW+GASL +L++ ID E+ +L TQ + GG +K
Sbjct: 227 HRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAK 286
Query: 304 WSDTQADILHTYL 316
D+ D LH+YL
Sbjct: 287 NPDSHPDPLHSYL 299
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta
subunit (alpha 6 - alpha 6 barrel fold). The protein
prenyltransferase family of lipid-modifying enzymes
includes protein farnesyltransferase (FTase) and
geranylgeranyltransferase types I and II (GGTase-I and
GGTase-II). They catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between the C1 atom of farnesyl (15-carbon by FTase) or
geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid
lipids and cysteine residues at or near the C-terminus
of protein acceptors. FTase and GGTase-I prenylate the
cysteine in the terminal sequence, "CAAX"; and GGTase-II
prenylates both cysteines in the "CC" (or "CXC")
terminal sequence. These enzymes are heterodimeric with
both alpha and beta subunits required for catalytic
activity. In contrast to other prenyltransferases,
GGTase-II does not recognize its protein acceptor
directly but requires Rab to complex with REP (Rab
escort protein) before prenylation can occur. These
enzymes are found exclusively in eukaryotes.
Length = 286
Score = 207 bits (528), Expect = 7e-65
Identities = 77/185 (41%), Positives = 101/185 (54%), Gaps = 25/185 (13%)
Query: 45 SFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESH 104
SF+ L G+ D RFV+CA SI +L+ + +D+ + +++I +YDG FG P ESH
Sbjct: 116 SFRGDL-GGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESH 174
Query: 105 GGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---RSGF 161
GG T+CA+ASLAL+ +LD E L RWL+ RQ GF
Sbjct: 175 GGYTFCAVASLALLGRLD--------------------LIDKERLLRWLVERQLASGGGF 214
Query: 162 QGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTGGLSKWSDTQADIL 220
GRPNK VDTCY+FW+GASL IL ID+E+L +L Q GG S D+
Sbjct: 215 NGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLY 274
Query: 221 HTYLG 225
HTY G
Sbjct: 275 HTYYG 279
Score = 133 bits (337), Expect = 1e-36
Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 29/266 (10%)
Query: 61 FCACSICYILDDW-SGMDRARCLEFIFRSLSY-DGAFGQGPCLESHGGSTYCALASLALM 118
+ S+ +L + ++ ++FI+ DG FG GP + H STY A+ SLA++
Sbjct: 32 WILSSLD-LLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAIL 90
Query: 119 NKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFW 176
D L +D E + ++L Q F+G VDT + +
Sbjct: 91 GD-DALSR------ID-----------REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYC 132
Query: 177 IGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRII 234
+ LS+LN T ID+E+L+ +L Q+ GG ++ +T+ + + R+
Sbjct: 133 ALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD 192
Query: 235 KTQIESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSV 291
E L RWL+ RQ GF GRPNK VDTCY+FW+GASL IL ID+E+L +
Sbjct: 193 LIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYI 252
Query: 292 LDTQ-HMTGGLSKWSDTQADILHTYL 316
L Q GG S D+ HTY
Sbjct: 253 LSCQQSEVGGFSDKPGKPPDLYHTYY 278
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational
modification, protein turnover, chaperones].
Length = 342
Score = 137 bits (346), Expect = 2e-37
Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 23/207 (11%)
Query: 22 GVLALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARC 81
VL+ + R +++ + P SF+ + +G+ D RF++ A SI +L D
Sbjct: 121 DVLSRIDRDSLASFISGLKNPDGSFR-SDLEGEVDTRFLYIALSILSLLGDLDKELFEGA 179
Query: 82 LEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLF 141
++++ + +Y+G FG P E+H G T+CALA+LAL+ KLD L
Sbjct: 180 VDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLS---------------- 223
Query: 142 YSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSV 199
+E L RWL RQ S G GR NK VDTCY+FW+ +SL+IL +I+ E L +
Sbjct: 224 ---DVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYI 280
Query: 200 LD-TQHMTGGLSKWSDTQADILHTYLG 225
LD Q +GG S + D+ HT G
Sbjct: 281 LDCQQETSGGFSDRPGEEPDVYHTCFG 307
Score = 95.2 bits (237), Expect = 5e-22
Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 25/251 (9%)
Query: 72 DWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASL 131
+D+ R + F+ + G FG GP +SH ST A+ SLA+++ LD
Sbjct: 71 YDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD--------- 121
Query: 132 YLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATW 189
L + +SL ++ + F+ VDT + + + LS+L
Sbjct: 122 VLSRIDR--------DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDK 173
Query: 190 IDEERLLLSVLDTQHMTGGLS--KWSDTQADILHTYLGEFFVRPRIIK-TQIESLKRWLI 246
E + + Q+ GG +++ A L + ++ K + +E L RWL
Sbjct: 174 ELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLA 233
Query: 247 FRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLD-TQHMTGGLSK 303
RQ S G GR NK VDTCY+FW+ +SL+IL +I+ E L +LD Q +GG S
Sbjct: 234 ERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSD 293
Query: 304 WSDTQADILHT 314
+ D+ HT
Sbjct: 294 RPGEEPDVYHT 304
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II
(GGTase-II)_like proteins containing the protein
prenyltransferase (PTase) domain, beta subunit (alpha 6
- alpha 6 barrel fold). GGTase-IIs are a subgroup of the
protein prenyltransferase family of lipid-modifying
enzymes. PTases catalyze the carboxyl-terminal
lipidation of Ras, Rab, and several other cellular
signal transduction proteins, facilitating membrane
associations and specific protein-protein interactions.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids
(geranylgeranyl (20-carbon) in the case of GGTase-II ).
GGTase-II catalyzes alkylation of both cysteine residues
in Rab proteins containing carboxy-terminal "CC", "CXCX"
or "CXC" motifs. PTases are heterodimeric with both
alpha and beta subunits required for catalytic activity.
In contrast to other prenyltransferases, GGTas-II
requires an escort protein to bring the substrate
protein to the catalytic heterodimer and to escort the
geryanylgeranylated product to the membrane.
Length = 287
Score = 134 bits (339), Expect = 6e-37
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF +CA +L +D + ++++ ++DG FG P ESH G +C +
Sbjct: 125 GEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCV 184
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVD 170
+LA++ LD + + L WL RQ G GRP K D
Sbjct: 185 GALAILGSLDLI--------------------DRDRLGWWLCERQLPSGGLNGRPEKLPD 224
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHM-TGGLSKWSDTQADILHTYLG 225
CY++W+ +SL I+ WI++ +L +L Q GG + D+ HT+ G
Sbjct: 225 VCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFG 280
Score = 89.2 bits (222), Expect = 3e-20
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 28/255 (10%)
Query: 76 MDRARCLEFIFRS-LSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLD 134
++R +EF+ + DG FG P + H ST A+ LAL + L+ +
Sbjct: 49 LNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKI---------- 98
Query: 135 LVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDE 192
E + +++ Q F G VDT +++ L++L ID
Sbjct: 99 --------DENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDV 150
Query: 193 ERLLLSVLDTQHMTGG--LSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQR 250
++ + +L + GG +++ A + +G + + + L WL RQ
Sbjct: 151 DKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQL 210
Query: 251 S--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHM-TGGLSKWSDT 307
G GRP K D CY++W+ +SL I+ WI++ +L +L Q GG +
Sbjct: 211 PSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGN 270
Query: 308 QADILHTY--LEAMS 320
D+ HT+ L +S
Sbjct: 271 MVDVFHTFFGLAGLS 285
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins
containing the protein prenyltransferase (PTase) domain,
beta subunit (alpha 6 - alpha 6 barrel fold). FTases are
a subgroup of PTase family of lipid-modifying enzymes.
PTases catalyze the carboxyl-terminal lipidation of Ras,
Rab, and several other cellular signal transduction
proteins, facilitating membrane associations and
specific protein-protein interactions. These proteins
are heterodimers of alpha and beta subunits. Both
subunits are required for catalytic activity.
Prenyltransferases employ a Zn2+ ion to alkylate a thiol
group catalyzing the formation of thioether linkages
between cysteine residues at or near the C-terminus of
protein acceptors and the C1 atom of isoprenoid lipids.
Ftase attaches a 15-carbon farnesyl group to the
cysteine within the C-terminal CaaX motif of substrate
proteins when X is Ala, Met, Ser, Cys or Gln. Protein
farnesylation has been shown to play critical roles in a
variety of cellular processes including Ras/mitogen
activated protein kinase signaling pathways in mammals
and, abscisic acid signal transduction in Arabidopsis.
Length = 299
Score = 123 bits (310), Expect = 1e-32
Identities = 68/188 (36%), Positives = 89/188 (47%), Gaps = 37/188 (19%)
Query: 52 DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
G+ D+R +CA S+ +L+ + E+I +Y+G FG P E+HGG T+CA
Sbjct: 122 GGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCA 181
Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ---RSGFQGRPNKP 168
LA+LA++ K D LD +ESL RWL+ RQ GFQGR NK
Sbjct: 182 LAALAILGKPD---------KLD-----------LESLLRWLVARQMRFEGGFQGRTNKL 221
Query: 169 VDTCYTFWIGASLSILNAA-------------TWIDEERLLLSVLD-TQHMTGGLSKWSD 214
VD CY+FW+G SL IL A T D+E L +L Q GGL
Sbjct: 222 VDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPG 281
Query: 215 TQADILHT 222
D HT
Sbjct: 282 KPRDFYHT 289
Score = 81.5 bits (202), Expect = 2e-17
Identities = 77/273 (28%), Positives = 108/273 (39%), Gaps = 47/273 (17%)
Query: 68 YILDDWSGMD-RARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRP 126
+L + + F+ R + G FG GP H +TY A+ +LA++ +
Sbjct: 38 ELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYD- 96
Query: 127 TQASLYLDLVKSFLFYSPQI--ESLKRWLI-FRQRSG-FQGRPNKPVDT--CYTFWIGAS 180
I E+L ++L+ +Q G F+ VD Y AS
Sbjct: 97 ------------------VIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVAS 138
Query: 181 LSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKTQI 238
L LN T E + +L Q GG +A +T+ L + + K +
Sbjct: 139 L--LNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDL 196
Query: 239 ESLKRWLIFRQ---RSGFQGRPNKPVDTCYTFWIGASLSILNSA-------------TWI 282
ESL RWL+ RQ GFQGR NK VD CY+FW+G SL IL + T
Sbjct: 197 ESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLF 256
Query: 283 DEERLLLSVLD-TQHMTGGLSKWSDTQADILHT 314
D+E L +L Q GGL D HT
Sbjct: 257 DQEALQEYILLCCQSEEGGLRDKPGKPRDFYHT 289
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit;
Provisional.
Length = 316
Score = 107 bits (269), Expect = 1e-26
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 53 GDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCAL 112
G+ D RF +CA +L ++ + +++I ++DG FG P ESH G +C +
Sbjct: 129 GEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCV 188
Query: 113 ASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQ--RSGFQGRPNKPVD 170
+LA+ L + + L WL RQ G GRP K D
Sbjct: 189 GALAITGSLHHV--------------------DKDLLGWWLCERQVKSGGLNGRPEKLPD 228
Query: 171 TCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMT-GGLSKWSDTQADILHTYLG 225
CY++W+ +SL I++ WID+++L +LD Q GG+S D D+ HT+ G
Sbjct: 229 VCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFG 284
Score = 75.9 bits (187), Expect = 2e-15
Identities = 64/253 (25%), Positives = 110/253 (43%), Gaps = 23/253 (9%)
Query: 68 YILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPT 127
+L +DR + ++ R G FG + H T A+ LAL ++LD L
Sbjct: 48 DLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLD-- 105
Query: 128 QASLYLDLVKSFLFYSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAA 187
D V S+ + L+ + F G +DT +++ LS+L
Sbjct: 106 -----ADKVASY------VAGLQN-----EDGSFSGDEWGEIDTRFSYCALCCLSLLKRL 149
Query: 188 TWIDEERLLLSVLDTQHMTGGL--SKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWL 245
I+ E+ + ++ ++ GG + ++ A + +G + + + L WL
Sbjct: 150 DKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWL 209
Query: 246 IFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMT-GGLS 302
RQ G GRP K D CY++W+ +SL I++ WID+++L +LD Q GG+S
Sbjct: 210 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGIS 269
Query: 303 KWSDTQADILHTY 315
D D+ HT+
Sbjct: 270 DRPDDAVDVFHTF 282
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 100 bits (251), Expect = 2e-24
Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 29/180 (16%)
Query: 53 GDCDMRFVFCACSICYILDDWS-GMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
+ D+R A +L + L+++ +YDG FG P ESHG T CA
Sbjct: 136 DESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGFG--PGGESHGYGTACA 193
Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS-----GFQGRPN 166
A+LAL+ LD SP + RWL+ RQR + R N
Sbjct: 194 AAALALLGDLD--------------------SPDAKKALRWLLSRQRPDGGWGEGRDRTN 233
Query: 167 KPVDTCYTFWIGASLSILNAA-TWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLG 225
K D+CYT W +L L D E+L+ +L Q+ GG S D HT
Sbjct: 234 KLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFA 293
Score = 74.1 bits (182), Expect = 6e-15
Identities = 55/265 (20%), Positives = 80/265 (30%), Gaps = 46/265 (17%)
Query: 82 LEFIFRSLSYDGAFG-QGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFL 140
++ + DG F G T AL +L L +
Sbjct: 58 IQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAV---------------- 101
Query: 141 FYSPQIESLKRWLIFRQRS---------GFQGRPNKPVDTCYTFWIGASLSILNAAT-WI 190
+ WL+ Q G D T + +L++L
Sbjct: 102 -DRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160
Query: 191 DEERLLLSVLDTQHMTGGLSKWSDTQADILHTY----LGEFFVR-PRIIKTQIESLKRWL 245
E+ L +L Q+ GG H Y + + RWL
Sbjct: 161 LIEKALDYLLSCQNYDGGFGPG-----GESHGYGTACAAAALALLGDLDSPDAKKALRWL 215
Query: 246 IFRQRS-----GFQGRPNKPVDTCYTFWIGASLSILNSA-TWIDEERLLLSVLDTQHMTG 299
+ RQR + R NK D+CYT W +L L D E+L+ +L Q+ G
Sbjct: 216 LSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDG 275
Query: 300 GLSKWSDTQADILHTY--LEAMSHA 322
G S D HT L A+S
Sbjct: 276 GFSSKPGKSYDTQHTVFALLALSLY 300
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta.
Length = 439
Score = 92.2 bits (229), Expect = 1e-20
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 34/190 (17%)
Query: 24 LALVYRLQISTSLRSFTTPCFSFKCTLAD-GDCDMRFVFCACSICYILDDWSGMDRARCL 82
L+ + R ++ T L P F+ + D G+ D+R + A S+ +L+
Sbjct: 140 LSSINREKLYTFLLRMKDPSGGFR--MHDGGEMDVRACYTAISVASLLNILDDELVKGVG 197
Query: 83 EFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFY 142
++I +Y+G G P E+HGG T+C LA++ L+N++D LDL
Sbjct: 198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDR---------LDL------- 241
Query: 143 SPQIESLKRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVL 200
SL W++FRQ GFQGR NK VD CY+FW G ++L L++++
Sbjct: 242 ----PSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQ---------LVTIV 288
Query: 201 DTQHMTGGLS 210
D Q TGG S
Sbjct: 289 DEQLQTGGSS 298
Score = 60.6 bits (147), Expect = 4e-10
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 70 LDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQA 129
LDD ++ ++F+ R +G +G GP H +TY A+ N L T+ +A
Sbjct: 89 LDD--ELEN-DTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAV------NTLVTIGGERA 139
Query: 130 SLYLDLVKSFLFYSPQIESLKRWLIFRQRSG-FQGRPNKPVDT--CYTFWIGASLSILNA 186
++ K + F L R + SG F+ +D CYT ++S+ +
Sbjct: 140 LSSINREKLYTF-------LLR---MKDPSGGFRMHDGGEMDVRACYT-----AISVASL 184
Query: 187 ATWIDEE---RLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKTQIESL 241
+D+E + +L Q GG+ +A +T+ L + + + + SL
Sbjct: 185 LNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSL 244
Query: 242 KRWLIFRQ--RSGFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTG 299
W++FRQ GFQGR NK VD CY+FW G ++L L++++D Q TG
Sbjct: 245 INWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQ---------LVTIVDEQLQTG 295
Query: 300 GLS 302
G S
Sbjct: 296 GSS 298
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase
repeat.
Length = 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 144 PQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILN 185
E L +L+ Q GF GRP DT YT+ A+L++L
Sbjct: 1 IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44
Score = 48.7 bits (117), Expect = 4e-08
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 238 IESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILN 277
E L +L+ Q GF GRP DT YT+ A+L++L
Sbjct: 3 KEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 76 MDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMN 119
+D+ + ++++ + DG FG P ES TYCALA+LAL+
Sbjct: 1 IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like.
Length = 112
Score = 38.9 bits (91), Expect = 5e-04
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 26/121 (21%)
Query: 92 DGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKR 151
DG +G S T AL +LA + +P ++
Sbjct: 11 DGGWGAAVGGGSDVAMTALALLALAALG----------------------ETPDVKKALA 48
Query: 152 WLIFRQRS--GFQGRPNK-PVDTCYTFWIGASLSILNAATWIDE-ERLLLSVLDTQHMTG 207
WL+ +Q GF P D T + A+L +L + E+ + +L Q+ G
Sbjct: 49 WLLSQQNPDGGFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDG 108
Query: 208 G 208
G
Sbjct: 109 G 109
Score = 36.2 bits (84), Expect = 0.004
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 199 VLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRS--GFQGR 256
+L Q+ GG +D+ T L + ++ WL+ +Q GF
Sbjct: 4 LLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKKALAWLLSQQNPDGGFGYD 63
Query: 257 PNK-PVDTCYTFWIGASLSILNSATWIDE-ERLLLSVLDTQHMTGG 300
P D T + A+L +L + E+ + +L Q+ GG
Sbjct: 64 PQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGG 109
>gnl|CDD|220251 pfam09462, Mus7, Mus7/MMS22 family. This family includes a
conserved region from the Mus7 protein. Mus7 is involved
in the repair of replication-associated DNA damage in
the fission yeast Schizosaccharomyces pombe. Mus7
functions in the same pathway as Mus81, a subunit of the
Mus81-Eme1 structure-specific endonuclease, which has
been implicated in the repair of the
replication-associated DNA damage. The MMS22 proteins
are involved in repairing double-stranded DNA breaks
created by the cleavage reaction of topoisomerase II.
Length = 603
Score = 36.4 bits (84), Expect = 0.020
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 35/216 (16%)
Query: 142 YSPQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLD 201
P++E LK+ + N ++ C +++ W +L V+
Sbjct: 194 LRPRLEELKKLVEPA---------NSHLEAC----------LISIRAWG---QLARFVIS 231
Query: 202 TQHMTGGLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQ--RSGFQGRPNK 259
TQ L + D +I L ++ + I+ Q E W F + + +
Sbjct: 232 TQKDVSILEPFVDWLNNIFSQLLKQYVLARSEIEAQNEV---WKSFLKNLADQLVEQNKR 288
Query: 260 PVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILH-----T 314
+++ F + + ++ A ++ +LLS + + L + + +
Sbjct: 289 TIESLLKFALRSLQDMIQQAPTLEHANVLLSKSPLKQIL-ELFHSRVPRVNQEALDTIQS 347
Query: 315 YLEAMSHASRNKLK--ERNFQLPLDKKDIAPLDELE 348
+L + + + + Q D DI L E E
Sbjct: 348 FLLPPKVTTEEQSSSADEDSQDYGDLDDIELLYEEE 383
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 28.9 bits (65), Expect = 5.5
Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 193 ERLLLSVLDTQHMTG---GLSKWSDTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFR- 248
+ LL +D Q + LSKW + + E+L L R
Sbjct: 531 DPALLQAMDAQGLANTLNALSKWPEEPD----------------CRAAAEALAARLARRP 574
Query: 249 -QRSGFQGRPNKPVDTCYTFWIGASLS---ILNSATWIDEERLLLSVLDTQHMT---GGL 301
RS + + + W A + + LL + Q + GL
Sbjct: 575 DLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGL 634
Query: 302 SKWSDT 307
SKW D
Sbjct: 635 SKWPDE 640
Score = 28.9 bits (65), Expect = 6.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 285 ERLLLSVLDTQHMTG---GLSKWSDTQA 309
+ LL +D Q + LSKW +
Sbjct: 531 DPALLQAMDAQGLANTLNALSKWPEEPD 558
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.425
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,397,880
Number of extensions: 1738855
Number of successful extensions: 1710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1650
Number of HSP's successfully gapped: 38
Length of query: 361
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 263
Effective length of database: 6,590,910
Effective search space: 1733409330
Effective search space used: 1733409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (26.9 bits)