RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6404
(361 letters)
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 346
Score = 181 bits (460), Expect = 7e-55
Identities = 84/203 (41%), Positives = 117/203 (57%), Gaps = 17/203 (8%)
Query: 24 LALVYRLQISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLE 83
L+ V + LR+ SF + DMRFV+CA ICY+L++WSGMD + +
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAIS 181
Query: 84 FIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYS 143
+I RS+SYD QG LESHGGST+C +ASL LM KL+ +F
Sbjct: 182 YIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEE----------------VFSE 225
Query: 144 PQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDT- 202
++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L + + E+ +L T
Sbjct: 226 KELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ 285
Query: 203 QHMTGGLSKWSDTQADILHTYLG 225
+ GG +KW D+ D LH Y G
Sbjct: 286 DRLVGGFAKWPDSHPDALHAYFG 308
Score = 127 bits (319), Expect = 3e-34
Identities = 63/294 (21%), Positives = 119/294 (40%), Gaps = 23/294 (7%)
Query: 57 MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
+ F A S +LD +++ +E+I+ GS+Y +
Sbjct: 31 LTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNP 90
Query: 117 LMNKLDT-------LRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQR--SGFQGRPN- 166
N + T L ++ E+ L Q F P
Sbjct: 91 SKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEG 150
Query: 167 KPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--- 223
D + + +LN + +D ++ + + + GL++ + ++ T+
Sbjct: 151 SENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGI 210
Query: 224 -----LGEFFVRPRIIKTQIESLKRWLIFRQRSGFQGRPNKPVDTCYTFWIGASLSILNS 278
+G+ + + ++ +KRW I RQ++G+ GRPNKPVDTCY+FW+GA+L +L
Sbjct: 211 ASLCLMGK--LEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKI 268
Query: 279 ATWIDEERLLLSVLDT-QHMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
+ + E+ +L T + GG +KW D+ D LH Y + +S + + +
Sbjct: 269 FQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICK 322
Score = 41.9 bits (98), Expect = 7e-05
Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 32/196 (16%)
Query: 175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLGEFFVRPRII 234
F+ + L +L++ ++++ ++ + Q + D +YLG F +
Sbjct: 35 FFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNP 94
Query: 235 -----------------------------KTQIESLKRWLIFRQR--SGFQGRPN-KPVD 262
+ E+ L Q F P D
Sbjct: 95 GTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSEND 154
Query: 263 TCYTFWIGASLSILNSATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTYLEAMSHA 322
+ + +LN+ + +D ++ + + + GL++ + ++ T+ S
Sbjct: 155 MRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLC 214
Query: 323 SRNKLKERNFQLPLDK 338
KL+E + L++
Sbjct: 215 LMGKLEEVFSEKELNR 230
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 153 bits (389), Expect = 1e-44
Identities = 59/198 (29%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 31 QISTSLRSFTTPCFSFKCTLADGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLS 90
++ ++S SF + G+ D RF FCA + +L ++ + +EF+ ++
Sbjct: 112 KVVAYVQSLQKEDGSFAGDI-WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 170
Query: 91 YDGAFGQGPCLESHGGSTYCALASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLK 150
+DG FG P ESH G YC LA+ ++L + + L
Sbjct: 171 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVN--------------------SDLLG 210
Query: 151 RWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNAATWIDEERLLLSVLDTQ-HMTG 207
WL RQ G GRP K D CY++W+ ASL I+ WID E+L +L Q TG
Sbjct: 211 WWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETG 270
Query: 208 GLSKWSDTQADILHTYLG 225
G + D HT G
Sbjct: 271 GFADRPGDMVDPFHTLFG 288
Score = 148 bits (374), Expect = 2e-42
Identities = 62/282 (21%), Positives = 108/282 (38%), Gaps = 29/282 (10%)
Query: 57 MRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLA 116
M V+ ++ ++ M++ L FI G + H T A+ L
Sbjct: 41 MSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILT 100
Query: 117 LMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYT 174
L + + + + + ++ Q+ F G +DT ++
Sbjct: 101 LYDSIHVINV--------------------DKVVAYVQSLQKEDGSFAGDIWGEIDTRFS 140
Query: 175 FWIGASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPR 232
F A+L++L I+ E+ + VL + GG +++ Y G + +
Sbjct: 141 FCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQ 200
Query: 233 IIKTQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLS 290
+ + + L WL RQ G GRP K D CY++W+ ASL I+ WID E+L
Sbjct: 201 LHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSF 260
Query: 291 VLDTQ-HMTGGLSKWSDTQADILHTY--LEAMSHASRNKLKE 329
+L Q TGG + D HT + +S ++K
Sbjct: 261 ILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKP 302
Score = 42.3 bits (99), Expect = 4e-05
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 239 ESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIGASLSILNSATWIDEERLLLSVLDTQH 296
E + ++ Q G YT L++ +S I+ ++++ V Q
Sbjct: 63 EEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQK 122
Query: 297 MTGGLSKWSDTQADILHTYLEAMSHASRNKLKERNFQ 333
G + + D ++ + A KL N +
Sbjct: 123 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVE 159
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 154 bits (390), Expect = 6e-44
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 37/191 (19%)
Query: 52 DGDCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCA 111
G+ D+R +CA S+ + + + E+I R +++G G P +E+HGG T+C
Sbjct: 176 GGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCG 235
Query: 112 LASLALMNKLDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS---GFQGRPNKP 168
LA+L ++ + +L ++SL +W+ RQ GFQGR NK
Sbjct: 236 LAALVILKRERSL--------------------NLKSLLQWVTSRQMRFEGGFQGRCNKL 275
Query: 169 VDTCYTFWIGASLSILNAATW-------------IDEERLLLSVLD-TQHMTGGLSKWSD 214
VD CY+FW L +L+ A ++ L +L Q GGL
Sbjct: 276 VDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPG 335
Query: 215 TQADILHTYLG 225
D HT
Sbjct: 336 KSRDFYHTCYC 346
Score = 139 bits (352), Expect = 2e-38
Identities = 60/277 (21%), Positives = 97/277 (35%), Gaps = 38/277 (13%)
Query: 61 FCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASLALMNK 120
+ S+ + + + +F+ S +G FG GP H TY A+ +L ++
Sbjct: 86 WILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGT 145
Query: 121 LDTLRPTQASLYLDLVKSFLFYSPQIESLKRWLIFRQRS--GFQGRPNKPVDTCYTFWIG 178
+ E L ++L ++ F VD +
Sbjct: 146 EEAYD-----------------IINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAA 188
Query: 179 ASLSILNAATWIDEERLLLSVLDTQHMTGGLSKWSDTQADILHTY--LGEFFVRPRIIKT 236
+ S+ N T E + Q+ GG+ +A +T+ L + R
Sbjct: 189 SVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSL 248
Query: 237 QIESLKRWLIFRQRS---GFQGRPNKPVDTCYTFWIGASLSILNSATW------------ 281
++SL +W+ RQ GFQGR NK VD CY+FW L +L+ A
Sbjct: 249 NLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW 308
Query: 282 -IDEERLLLSVLD-TQHMTGGLSKWSDTQADILHTYL 316
++ L +L Q GGL D HT
Sbjct: 309 MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCY 345
>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 186
Score = 28.3 bits (62), Expect = 1.0
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 54 DCDMRFVFCACSICYILDDWSGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALA 113
+ R + I + +D + I FG P G A
Sbjct: 99 GAEDRRAYFKSVIGFYIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEM 158
Query: 114 SLALMNKLD 122
++ N L
Sbjct: 159 TIEEKNALS 167
>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE)
{Yersinia pestis [TaxId: 632]}
Length = 197
Score = 28.3 bits (63), Expect = 1.1
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 15/66 (22%)
Query: 65 SICYILDDW----SGMDRARCLEFIFRSLSYDGAFGQGPCLESHGGSTYCALASL-ALMN 119
I I D D + F+ ++LS D L+S L +++
Sbjct: 139 GIYAIWSDLQKRFPNGDIDSVILFLQKALSAD--------LQSQQSG--SGREKLGIVIS 188
Query: 120 KLDTLR 125
L L+
Sbjct: 189 DLQKLK 194
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 26.4 bits (57), Expect = 6.2
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 17/105 (16%)
Query: 157 QRSGFQGRPNKPVDTCYTFWIGASLSILN-AATWIDEERLLLSVLDTQHMTGGLSKWSDT 215
Q + + NK S + + +++ +++ GG+ D
Sbjct: 305 QINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS-------GGIFSGLDA 357
Query: 216 Q------ADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRSGFQ 254
A + Y F + L L + G+
Sbjct: 358 LEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLL---YQRGYY 399
>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 359
Score = 25.6 bits (55), Expect = 9.5
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 214 DTQADILHTYLGEFFVRPRIIKTQIESLKRWLIFRQRS 251
+T D+ H +L F+ ++ I++ I ++ +
Sbjct: 16 ETLGDV-HDFLLRLFLDRDLMTLPIQNKLAPFIAKRLT 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.425
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,357,368
Number of extensions: 62013
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 16
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.6 bits)