BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6405
(548 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 26/182 (14%)
Query: 47 GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
G E + L R GNS +G ++AGG+D + I + K+I G A +DGRL+ D
Sbjct: 56 GEMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 112
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
IL +N ++ +TH + L +++R PP +EI LIK GLGFS+
Sbjct: 113 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 172
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
GG + GD + V KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK
Sbjct: 173 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 232
Query: 204 ND 205
D
Sbjct: 233 YD 234
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V+HR G +G + GG D E I + +++G PAD G L+KGD+ILS+NG ++
Sbjct: 311 IVIHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 114 LTHKESLAILK 124
+H+++ LK
Sbjct: 367 ASHEQAAIALK 377
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P I + + GLGF++ GG+D + + + I GG A+ +G+L+ GD+IL++N V
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 363
Query: 188 VTEMSRIEAWSLLK 201
+ S +A LK
Sbjct: 364 LRNASHEQAAIALK 377
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 26/182 (14%)
Query: 47 GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
G+ E + L R GNS +G ++AGG+D + I + K+I G A +DGRL+ D
Sbjct: 9 GSMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 65
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
IL +N ++ +TH + L +++R PP +EI LIK GLGFS+
Sbjct: 66 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 125
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
GG + GD + V KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK
Sbjct: 126 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 185
Query: 204 ND 205
D
Sbjct: 186 YD 187
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 26/182 (14%)
Query: 47 GTSEVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGD 101
G+ E + L R GNS +G ++AGG+D + I + K+I G A +DGRL+ D
Sbjct: 2 GSMEYEEITLER---GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 58
Query: 102 RILSINGKSMKGLTHKES------------LAILKRGPP----VEITLIKDGAGLGFSLE 145
IL +N ++ +TH + L +++R PP +EI LIK GLGFS+
Sbjct: 59 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIA 118
Query: 146 GGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
GG + GD + V KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK
Sbjct: 119 GGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT 178
Query: 204 ND 205
D
Sbjct: 179 YD 180
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 23/167 (13%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I G A +DGRL+ D IL +N ++ +TH
Sbjct: 11 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 117 KES------------LAILKRGPP----VEITLIKDGAGLGFSLEGGKDSPF--GDQPLT 158
+ L +++R PP +EI LIK GLGFS+ GG + GD +
Sbjct: 71 SAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIY 130
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
V KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK D
Sbjct: 131 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 177
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P GD P + + KI GG A ++G+L+ D IL +N V
Sbjct: 5 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 188 VTEMSRIEAWSLLKK 202
V E++ A LK+
Sbjct: 65 VREVTHSAAVEALKE 79
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 54/78 (69%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+TL K AGLGFSLEGGK S GD+PLT+ +IF G +E++ ++ GDEIL + +
Sbjct: 33 VTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
Query: 191 MSRIEAWSLLKKLNDGTI 208
++R EAW+++K L DG +
Sbjct: 93 LTRFEAWNIIKALPDGPV 110
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGG--SDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
T+E +V + + +G +L GG S + K +T++++ G +++ +Q GD IL
Sbjct: 25 TAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQ 84
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
+ G +M+GLT E+ I+K P +T++
Sbjct: 85 LGGTAMQGLTRFEAWNIIKALPDGPVTIV 113
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
+ V +LH++ G +G +LAGG+D E+K ITVH+V A ++G +QKG+ +LSINGKS
Sbjct: 16 IHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKS 74
Query: 111 MKGLTHKESLAILKR 125
+KG TH ++LAIL++
Sbjct: 75 LKGTTHHDALAILRQ 89
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 119 SLAILKRGPPVEITLI--KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
S A LK+ + +T++ ++GAGLGFSL GG D ++ +TV ++F G A + G ++
Sbjct: 6 SGATLKQLDGIHVTILHKEEGAGLGFSLAGGAD--LENKVITVHRVFPNGLASQEGTIQK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLKKLND 205
G+E+L+IN + + +A ++L++ +
Sbjct: 64 GNEVLSINGKSLKGTTHHDALAILRQARE 92
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 26/184 (14%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
PG+ + S VV G ++G+T++GG D + K V + G A R +L GD I +
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKP-RVSNLRQGGIAARSDQLDVGDYIKA 60
Query: 106 INGKSMKGLTHKESLAILKRG------------PPV------------EITLIKDGAGLG 141
+NG ++ H E +++LK PPV E+TL K+G G
Sbjct: 61 VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120
Query: 142 FSLEGGK-DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
F + GG D +P+ + + GG A++ G +K GD +L+++ + + + EA S+L
Sbjct: 121 FVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 180
Query: 201 KKLN 204
K+
Sbjct: 181 KQCG 184
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+G V + K+G LG ++ GG D D V + GG A ++ QL GD I +N
Sbjct: 6 KGSTVVELMKKEGTTLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGDYIKAVN 62
Query: 185 NVPVTEMSRIEAWSLLKKLNDGTIQDIK 212
+ + + E SLLK + + + +++
Sbjct: 63 GINLAKFRHDEIISLLKNVGERVVLEVE 90
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
ITL + GLGFS+ GG SP GD P+ VK +F G A ++G+LK GD+I+ +N +
Sbjct: 29 ITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 191 MSRIEAWSLLKKLNDGTI 208
++ EA ++LK+ GT+
Sbjct: 89 VTHEEAVAILKR-TKGTV 105
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
G +L + + L R G I GS + I V V + A DGRL+
Sbjct: 14 GTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLK 73
Query: 99 KGDRILSINGKSMKGLTHKESLAILKR 125
+GD+I+++NG+S++G+TH+E++AILKR
Sbjct: 74 RGDQIIAVNGQSLEGVTHEEAVAILKR 100
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +NNV
Sbjct: 13 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 72
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 73 CLEEVTHEEAVTALKNTSD 91
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 24 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 83
Query: 121 AILK 124
LK
Sbjct: 84 TALK 87
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +NNV
Sbjct: 10 MEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 69
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 70 ALEEVTHEEAVTALKNTSD 88
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N +++ +TH+E++
Sbjct: 21 LGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV 80
Query: 121 AILK 124
LK
Sbjct: 81 TALK 84
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +NNV
Sbjct: 11 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 70
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 71 CLEEVTHEEAVTALKNTSD 89
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 22 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 81
Query: 121 AILK 124
LK
Sbjct: 82 TALK 85
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +NNV
Sbjct: 1 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 61 CLEEVTHEEAVTALKNTSD 79
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 12 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 71
Query: 121 AILK 124
LK
Sbjct: 72 TALK 75
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 65 SLEEVTHEEAVTALKNTSD 83
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N S++ +TH+E++
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75
Query: 121 AILK 124
LK
Sbjct: 76 TALK 79
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 65 CLEEVTHEEAVTALKNTSD 83
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 75
Query: 121 AILK 124
LK
Sbjct: 76 TALK 79
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P GD P + + KI GG A ++G+L+ D IL +N V
Sbjct: 12 EITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVD 71
Query: 188 VTEMSRIEAWSLLKK 202
V+E+S +A LK+
Sbjct: 72 VSEVSHSKAVEALKE 86
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 50 EVSVVVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRIL 104
E + L R GNS +G ++AGG+D + I + K+I G A DGRL+ D IL
Sbjct: 9 EFEEITLER---GNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCIL 65
Query: 105 SINGKSMKGLTHKESLAILKRG 126
+N + ++H +++ LK
Sbjct: 66 RVNEVDVSEVSHSKAVEALKEA 87
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 65 GLEEVTHEEAVTALKNTSD 83
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 121 AILK 124
LK
Sbjct: 76 TALK 79
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
VEI L K GLGFS+ GG + GD + V KI GG A+K+G+L+ GD +L +NN
Sbjct: 26 VEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA ++LK ++
Sbjct: 86 SLEEVTHEEAVAILKNTSE 104
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DGRLQ GDR+L +N S++ +TH+E++
Sbjct: 37 LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAV 96
Query: 121 AILK 124
AILK
Sbjct: 97 AILK 100
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
T E ++LH+ G +G + GG D E I V +++G PAD G L++GDRILS+N
Sbjct: 10 TREPRKIILHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILSVN 65
Query: 108 GKSMKGLTHKESLAILKRG 126
G +++ TH+++ A LKR
Sbjct: 66 GVNLRNATHEQAAAALKRA 84
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P +I L K GLGF++ GG+D + + V I GG A+ +G+L+ GD IL++N V
Sbjct: 13 PRKIILHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVN 68
Query: 188 VTEMSRIEAWSLLKK 202
+ + +A + LK+
Sbjct: 69 LRNATHEQAAAALKR 83
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +N+V
Sbjct: 1 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 60
Query: 188 VTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 61 LEEVTHEEAVTALKNTSD 78
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 11 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 70
Query: 121 AILK 124
LK
Sbjct: 71 TALK 74
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P GD P + + KI GG A ++G+L+ D IL +N V
Sbjct: 5 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 64
Query: 188 VTEMSRIEAWSLLKK 202
V E++ A LK+
Sbjct: 65 VREVTHSAAVEALKE 79
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I G A +DGRL+ D IL +N ++ +TH
Sbjct: 11 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 117 KESLAILKRG 126
++ LK
Sbjct: 71 SAAVEALKEA 80
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P GD P + + KI GG A ++G+L+ D IL +N V
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 188 VTEMSRIEAWSLLKK 202
V E++ A LK+
Sbjct: 64 VREVTHSAAVEALKE 78
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I G A +DGRL+ D IL +N ++ +TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 69
Query: 117 KESLAILKRG 126
++ LK
Sbjct: 70 SAAVEALKEA 79
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSP-FGDQP-LTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P GD P + + KI GG A ++G+L+ D IL +N V
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 188 VTEMSRIEAWSLLKK 202
V E++ A LK+
Sbjct: 64 VREVTHSAAVEALKE 78
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I G A +DGRL+ D IL +N ++ +TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 69
Query: 117 KESLAILKRG 126
++ LK
Sbjct: 70 SAAVEALKEA 79
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 54 VVLHRDLPGNSVGITLAGGSD---YESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
V LH++ GN+ G + GG+ +S+ + + V G PADR+G ++ GDR+LS++G
Sbjct: 7 VTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 111 MKGLTHKESLAILKR 125
+ G TH E+++ILK+
Sbjct: 65 LLGTTHAEAMSILKQ 79
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 129 VEITLIKDGAGLGFSLEGGK-DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
VE+TL K+G GF + GG D +P+ + + GG A++ G +K GD +L+++ +
Sbjct: 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 188 VTEMSRIEAWSLLKK 202
+ + EA S+LK+
Sbjct: 65 LLGTTHAEAMSILKQ 79
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V I GG A K+G+L+ GD++L +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ E++ EA + LK +D
Sbjct: 65 GLEEVTHEEAVTALKNTSD 83
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V ++ G A +DG+LQ GD++L++N ++ +TH+E++
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 121 AILK 124
LK
Sbjct: 76 TALK 79
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P D + + KI TGG A ++G+L+ D IL +N V
Sbjct: 14 EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVD 73
Query: 188 VTEMSRIEAWSLLKK 202
V +++ +A LK+
Sbjct: 74 VRDVTHSKAVEALKE 88
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I+G A +DGRL+ D IL +N ++ +TH
Sbjct: 20 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTH 79
Query: 117 KESLAILKRG 126
+++ LK
Sbjct: 80 SKAVEALKEA 89
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
VVLH+ G +G + GG D E I V +++G PAD G LQ+GD+ILS+NG ++G
Sbjct: 7 VVLHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 114 LTHKESLAILKRGPPVEITLI 134
+H+++ A LK G +T+I
Sbjct: 63 ASHEQAAAALK-GAGQTVTII 82
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P ++ L K GLGF++ GG+D + + V I GG A+ +G+L+ GD+IL++N +
Sbjct: 4 PRKVVLHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELQRGDQILSVNGID 59
Query: 188 VTEMSRIEAWSLLK 201
+ S +A + LK
Sbjct: 60 LRGASHEQAAAALK 73
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
++LH+ G +G + GG D E I V +++G PAD G L++GDRILS+NG +++
Sbjct: 19 IILHKGSTG--LGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 114 LTHKESLAILKRG 126
TH+++ A LKR
Sbjct: 75 ATHEQAAAALKRA 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P +I L K GLGF++ GG+D + + V I GG A+ +G+L+ GD IL++N V
Sbjct: 16 PRKIILHKGSTGLGFNIVGGEDG----EGIFVSFILAGGPADLSGELRRGDRILSVNGVN 71
Query: 188 VTEMSRIEAWSLLKK 202
+ + +A + LK+
Sbjct: 72 LRNATHEQAAAALKR 86
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+G+++ GGSD I +H+V A +DGRL GD+IL +NG ++ TH E++ +L+
Sbjct: 17 LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76
Query: 125 RGPP-VEITLIKDGA 138
+ P V +TL +D A
Sbjct: 77 QTPQRVRLTLYRDEA 91
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G I + K GLG S+ GG D+ G + + +++ G A K+G+L AGD+IL +N
Sbjct: 3 GCETTIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 186 VPVTEMSRIEAWSLLKK 202
+ + + + EA ++L++
Sbjct: 61 IDLRKATHDEAINVLRQ 77
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EITL + +GLGFS+ GG D+P D + + KI TGG A ++G+L+ D IL +N
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEAD 63
Query: 188 VTEMSRIEAWSLLKK 202
V +++ +A LK+
Sbjct: 64 VRDVTHSKAVEALKE 78
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 62 GNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
GNS +G ++AGG+D + I + K+I+G A +DGRL+ D IL +N ++ +TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTH 69
Query: 117 KESLAILKRG 126
+++ LK
Sbjct: 70 SKAVEALKEA 79
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 139 GLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +NNV + E++ EA
Sbjct: 14 GLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 73
Query: 197 WSLLKKLND 205
+ LK +D
Sbjct: 74 VTALKNTSD 82
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 57 HRDLPGNS--VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
H +P S +G ++AGG + I V K+I G A +DG+LQ GD++L++N +
Sbjct: 5 HHLVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVA 64
Query: 111 MKGLTHKESLAILKRGPP-VEITLIKDGAG 139
++ +TH+E++ LK V + + K G+G
Sbjct: 65 LEEVTHEEAVTALKNTSDFVYLKVAKPGSG 94
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD+IL +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ ++ +A + LK D
Sbjct: 65 GLEDVMHEDAVAALKNTYD 83
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYE----SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I V K+I G A +DGRLQ GD+IL++N ++ + H++++
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 75
Query: 121 AILK 124
A LK
Sbjct: 76 AALK 79
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 63 NSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
NS+GI++ GG + + I V VI A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 121 AILKRGPPVEITLIKDG 137
L+ V L++ G
Sbjct: 76 ETLRNTGQVVHLLLEKG 92
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G E+ L K+ LG S+ GG ++ + VK + G AE +G++ GD +L +
Sbjct: 2 KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
Query: 184 NNVPVTEMSRIEAWSLLK 201
N V + + +A L+
Sbjct: 62 NGVSLEGATHKQAVETLR 79
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 133 LIKDGAGLGFSLEGGKDS-PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
L + GLGFS+ GGK S P+ GD + V +I GG A + G L+ GD +L+IN V VT
Sbjct: 13 LARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Query: 190 EMSRIEAWSLL 200
E A SLL
Sbjct: 73 EARHDHAVSLL 83
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGG---SDYESKE--ITVHKVISGTPADRDGRLQKGD 101
G+S V L R G +G ++AGG + Y + + I V ++ G A R G LQ GD
Sbjct: 4 GSSGRHVACLARSERG--LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 102 RILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFS 143
R+LSING + H ++++L P L++ AG G S
Sbjct: 62 RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 40 CPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQK 99
CP ++PG + + R + +G+++ GG D I +H+V A RDGRL
Sbjct: 11 CP--IVPGQEMIIEISKGR----SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWA 64
Query: 100 GDRILSINGKSMKGLTHKESLAILKRGP-PVEITLIKDGA 138
GD+IL +NG ++ +H+E++ L++ P V + + +D A
Sbjct: 65 GDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEA 104
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + I + K +GLG S+ GGKD+P + + +++ G A ++G+L AGD+IL +N
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPL--NAIVIHEVYEEGAAARDGRLWAGDQILEVNG 73
Query: 186 VPVTEMSRIEAWSLLKK 202
V + S EA + L++
Sbjct: 74 VDLRNSSHEEAITALRQ 90
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+E+ L+K GLGFS+ GG + GD + + KI GG A+K+G+L+ GD +L +NN
Sbjct: 5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ ++ EA + LK +D
Sbjct: 65 NLQDVRHEEAVASLKNTSD 83
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSDYES----KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G ++AGG + I + K+I G A +DGRLQ GDR+L++N +++ + H+E++
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 121 AILK 124
A LK
Sbjct: 76 ASLK 79
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 63 NSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
NS+GI++ GG + + I V VI A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAV 75
Query: 121 AILK 124
L+
Sbjct: 76 ETLR 79
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G E+ L K+ LG S+ GG ++ + VK + G AE +G++ GD +L +
Sbjct: 2 KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
Query: 184 NNVPVTEMSRIEAWSLLK 201
N V + + +A L+
Sbjct: 62 NGVSLEGATHKQAVETLR 79
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G V + IK L +LEGG DSP G + V ++ GG AE++G + GDEI+ IN
Sbjct: 16 GKDVRLLRIKKEGSLDLALEGGVDSPVGK--VVVSAVYEGGAAERHGGVVKGDEIMAING 73
Query: 186 VPVTEMSRIEAWSLLKK 202
VT+ + EA + L+K
Sbjct: 74 KIVTDYTLAEAEAALQK 90
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
S+ + L GG D ++ V V G A+R G + KGD I++INGK + T E+ A L
Sbjct: 29 SLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88
Query: 124 KRG 126
++
Sbjct: 89 QKA 91
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
S+GI++ GG + + I V +I A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 24 SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 83
Query: 122 ILKRGPPVEITLIKDG 137
L+ V L++ G
Sbjct: 84 TLRNTGQVVHLLLEKG 99
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
+K G E+ L K LG S+ GG ++ + VK I G AE +G++ GD +L
Sbjct: 8 MKPGDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 67
Query: 183 INNVPVTEMSRIEAWSLLK 201
+N V + + +A L+
Sbjct: 68 VNGVSLEGATHKQAVETLR 86
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 64 SVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
S+GI++ GG + + I V +I A+ DGR+ KGDR+L++NG S++G THK+++
Sbjct: 16 SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 75
Query: 122 ILKRGPPVEITLIKDG 137
L+ V L++ G
Sbjct: 76 TLRNTGQVVHLLLEKG 91
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G E+ L K LG S+ GG ++ + VK I G AE +G++ GD +L +N
Sbjct: 3 GDTFEVELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 62
Query: 186 VPVTEMSRIEAWSLLK 201
V + + +A L+
Sbjct: 63 VSLEGATHKQAVETLR 78
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+ +G + GG ++ + V ++ G ADRDGRLQ GD IL I G +++G+T ++
Sbjct: 25 GSGLGFGIVGG---KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQ 81
Query: 122 ILKR-GPPVEITLIKDGAG 139
+L+ G V + + +D AG
Sbjct: 82 VLRNCGNSVRMLVARDPAG 100
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
E+ LI DG+GLGF + GGK S + V+ I GG A+++G+L+ GD IL I V
Sbjct: 18 EVELINDGSGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Query: 190 EMSRIEAWSLLK 201
M+ + +L+
Sbjct: 73 GMTSEQVAQVLR 84
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPA---DRDGRLQKGDRILSINGK 109
VV + +D PG S+G+T+AGG+ + ++ ++ VIS P RDGR++ GD +L+++G
Sbjct: 27 VVNIQKD-PGESLGMTVAGGASHREWDLPIY-VISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 110 SMKGLTHKESLAILKR 125
+ ++ E++A+LKR
Sbjct: 85 ELTEVSRSEAVALLKR 100
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 131 ITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
+ + KD G LG ++ GG D P+ V + GG ++G++K GD +L ++ V +T
Sbjct: 28 VNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELT 87
Query: 190 EMSRIEAWSLLKKLNDGTIQDIKAL 214
E+SR EA +LLK+ + + +KAL
Sbjct: 88 EVSRSEAVALLKRTSSSIV--LKAL 110
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V+HR G +G + GG D E I + +++G PAD G L+KGD+ILS+NG ++
Sbjct: 18 IVIHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 114 LTHKESLAILK 124
+H+++ LK
Sbjct: 74 ASHEQAAIALK 84
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P I + + GLGF++ GG+D + + + I GG A+ +G+L+ GD+IL++N V
Sbjct: 15 PRRIVIHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 70
Query: 188 VTEMSRIEAWSLLK 201
+ S +A LK
Sbjct: 71 LRNASHEQAAIALK 84
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 30/184 (16%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVIS----GTPADRDGRLQKGDRIL 104
+E + VVL D P GI L G S + ++ ++ +IS +PA+R G LQ GDR++
Sbjct: 5 TETTEVVLTAD-PVTGFGIQLQG-SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62
Query: 105 SINGKSMKGLTHKESLAILKRGPPV-EITL----------------------IKDGAGLG 141
+ING + T +E+ +L+ ++TL K LG
Sbjct: 63 AINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELG 122
Query: 142 FSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
++ GD PL + I G A + G L+ GD++L I+N+ + S +A +L+
Sbjct: 123 ITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ 181
Query: 202 KLND 205
+ D
Sbjct: 182 QCED 185
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 114 LTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT----VKKIFTGGCAE 169
+ H E+ ++ PV G G L+G S F + L+ + I AE
Sbjct: 2 VVHTETTEVVLTADPV--------TGFGIQLQG---SVFATETLSSPPLISYIEADSPAE 50
Query: 170 KNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
+ G L+ GD ++ IN +P + + EA LL+
Sbjct: 51 RCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 82
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 27/121 (22%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-------------RG 126
+ + ++ G PA++ G+L GD+I+SING S+ GL +I+K R
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRC 90
Query: 127 PPVEITLIKD---GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
PPV LI+ LGFS++ G + + GG AE+ G ++ G I+ I
Sbjct: 91 PPVTTVLIRRPDLRYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEI 139
Query: 184 N 184
N
Sbjct: 140 N 140
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
+ + + GG AEK+G+L GD+I++IN + + S++K L +
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 79
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G ++ GG +Y+ ++ V ++ PA R+GR++ GD+I+ ING+S + +TH ++ ++K
Sbjct: 25 GFSIRGGREYK-MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
Query: 126 GPPVEITLIKDGAGLGFS 143
G L+K G G G S
Sbjct: 84 GGRRVRLLLKRGTGSGPS 101
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ + K G GFS+ GG++ L V ++ G A +NG+++ GD+I+ IN +
Sbjct: 15 VDMEKGAKGFGFSIRGGREYKMD---LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD 71
Query: 191 MSRIEAWSLLK 201
M+ A L+K
Sbjct: 72 MTHARAIELIK 82
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V+HR G +G + GG D E I + +++G PAD G L+KGD+ILS+NG ++
Sbjct: 18 IVIHRGSTG--LGFNIIGGEDGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 114 LTHKESLAILK 124
+H+++ LK
Sbjct: 74 ASHEQAAIALK 84
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P I + + GLGF++ GG+D + + + I GG A+ +G+L+ GD+IL++N V
Sbjct: 15 PRRIVIHRGSTGLGFNIIGGEDG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 70
Query: 188 VTEMSRIEAWSLLK 201
+ S +A LK
Sbjct: 71 LRNASHEQAAIALK 84
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 66 GITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G+TL GG D + V ++ PA R GRL+ GD +L ING+S +GLTH +++ ++
Sbjct: 25 GLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR 84
Query: 125 RGPP 128
G P
Sbjct: 85 AGGP 88
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ L++ AG G +L GG+D GD PL V+ + G A++ G+L+ GD +L IN
Sbjct: 15 VELVRGYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQG 73
Query: 191 MSRIEA 196
++ +A
Sbjct: 74 LTHAQA 79
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 65 VGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
+G+ + GG + E + +H+VI G +DGRL+ GD+++SIN +SM G++ +E+ +I+
Sbjct: 27 LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
Query: 124 KRG-----PPVEITLIKDGAGLG 141
R P EI I+ G G
Sbjct: 87 TRAKLRSESPWEIAFIRSGPSSG 109
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT-VKKIFTGGCAEKNGQLKAGDEIL 181
L R P + + GLG + GG + G PL + ++ GG K+G+LK GD+++
Sbjct: 10 LDRDPAFRVITVTKETGLGLKILGGINRNEG--PLVYIHEVIPGGDCYKDGRLKPGDQLV 67
Query: 182 TINNVPVTEMSRIEAWSLLKK 202
+IN + +S EA S++ +
Sbjct: 68 SINKESMIGVSFEEAKSIITR 88
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E V LHR PG GI ++GG D ++S E I + V+ G PA+ G+LQ+ DR+
Sbjct: 7 EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+NG SM + H ++ L++ G +IT+ + G
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 137 GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
G G G ++ GG+D+P G+ + + + GG AE GQL+ D + +N V + +
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEH 75
Query: 194 IEAWSLLKK 202
A L+K
Sbjct: 76 AFAVQQLRK 84
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G + I L K GLGFS+ + G P+ VK I G A ++G+LKAGD ++ +
Sbjct: 8 KVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Query: 184 NNVPVTEMSRIEAWSLLKKLN-DGTI 208
N V + S+ E SLL+ +GT+
Sbjct: 68 NGVDLAGKSQEEVVSLLRSTKMEGTV 93
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
S I V ++ A +DGRL+ GDR++ +NG + G + +E +++L+
Sbjct: 38 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 45 IPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
+PG E+ ++ L +D N +G++LAG D I V + PA DGR++ GD +L
Sbjct: 22 LPG--ELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELL 77
Query: 105 SINGKSMKGLTHKESLAILKRGPP-VEITLIKD 136
IN + + G +H+ + AI+K P V++ I++
Sbjct: 78 EINNQILYGRSHQNASAIIKTAPSKVKLVFIRN 110
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
I L KD GLG SL G KD + V I G A +G+++ GDE+L INN +
Sbjct: 29 IELEKDKNGLGLSLAGNKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86
Query: 191 MSRIEAWSLLK 201
S A +++K
Sbjct: 87 RSHQNASAIIK 97
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E V LHR PG GI ++GG D ++S E I + V+ G PA+ G+LQ+ DR+
Sbjct: 7 EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+NG SM + H ++ L++ G +IT+ + G
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGG 99
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 137 GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
G G G ++ GG+D+P G+ + + + GG AE GQL+ D + +N V + +
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEH 75
Query: 194 IEAWSLLKK 202
A L+K
Sbjct: 76 AFAVQQLRK 84
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ L K GLGF++ GGK+ + P+ + ++ GG A+++G LK GD++L++N V V
Sbjct: 9 VELPKTDEGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65
Query: 191 MSRIEAWSLLK 201
+A LLK
Sbjct: 66 EQHEKAVELLK 76
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 47 GTSEVSVVVLHRDLPGNS--VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
G+S S VV +LP +G + GG + S I + +VI G ADR G L++GD++L
Sbjct: 1 GSSGSSGVV---ELPKTDEGLGFNIMGGKEQNSP-IYISRVIPGGVADRHGGLKRGDQLL 56
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLG 141
S+NG S++G H++++ +LK +++ G G
Sbjct: 57 SVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGPSSG 93
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G + I L K GLGFS+ + G P+ VK I G A ++G+LKAGD ++ +
Sbjct: 27 KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
Query: 184 NNVPVTEMSRIEAWSLLKKLN-DGTI 208
N V + S+ E SLL+ +GT+
Sbjct: 87 NGVDLVGKSQEEVVSLLRSTKMEGTV 112
Score = 35.8 bits (81), Expect = 0.057, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
S I V ++ A +DGRL+ GDR++ +NG + G + +E +++L+
Sbjct: 57 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 61 PGNSVGITLAGGS--------DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
PG +GI++ GG+ D + I + KV A RDGRL+ G R+L +N +S+
Sbjct: 19 PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLL 78
Query: 113 GLTHKESLAILKRGPPVEITLIKDG 137
GLTH E++ +L+ L+ DG
Sbjct: 79 GLTHGEAVQLLRSVGDTLTVLVCDG 103
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + I L K GLGFS+ + G P+ VK I G A ++G+LKAGD ++ +N
Sbjct: 4 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 63
Query: 186 VPVTEMSRIEAWSLLKKLN-DGTI 208
V + S+ E SLL+ +GT+
Sbjct: 64 VDLAGKSQEEVVSLLRSTKMEGTV 87
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
S I V ++ A +DGRL+ GDR++ +NG + G + +E +++L+
Sbjct: 32 SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 63 NSVGITLA-----GGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT 115
NS+GI++ GG + + I V VI A+ DGR+ KGDR+L++NG S++G T
Sbjct: 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79
Query: 116 HKESLAILKRGPPVEITLIKDG 137
HK+++ L+ V L++ G
Sbjct: 80 HKQAVETLRNTGQVVHLLLEKG 101
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 124 KRGPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
K G E+ L K+ LG S+ +GG ++ + VK + G AE +G++ GD
Sbjct: 6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGD 65
Query: 179 EILTINNVPVTEMSRIEAWSLLK 201
+L +N V + + +A L+
Sbjct: 66 RVLAVNGVSLEGATHKQAVETLR 88
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V++L D G +GI++ GG ++ I + ++ G PADR G L GD IL++NG +++
Sbjct: 31 VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
Query: 113 GLTHKESLAILKR 125
HKE++ IL +
Sbjct: 88 DTKHKEAVTILSQ 100
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ L +D GLG S+ GGK+ P+ + +I G A++ G L GD IL +N V + +
Sbjct: 32 LLLKEDHEGLGISITGGKEHGV---PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
Query: 191 MSRIEAWSLLKK 202
EA ++L +
Sbjct: 89 TKHKEAVTILSQ 100
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V+HR G +G + GG E I + +++G PAD G L+KGD+ILS+NG ++
Sbjct: 10 IVIHRGSTG--LGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 114 LTHKESLAILK 124
+H+++ LK
Sbjct: 66 ASHEQAAIALK 76
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P I + + GLGF++ GG+ + + + I GG A+ +G+L+ GD+IL++N V
Sbjct: 7 PRRIVIHRGSTGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 62
Query: 188 VTEMSRIEAWSLLK 201
+ S +A LK
Sbjct: 63 LRNASHEQAAIALK 76
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI L + +GLGFS+ GG D+P D + + KI GG A +G+L D +L +N V
Sbjct: 7 EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 188 VTEMSRIEAWSLLKK 202
V+E+ A LK+
Sbjct: 67 VSEVVHSRAVEALKE 81
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 54 VVLHRDLPGNS-VGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSING 108
+VL R GNS +G ++AGG D + I + K+I G A DGRL D +L +N
Sbjct: 8 IVLER---GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNE 64
Query: 109 KSMKGLTHKESLAILKRGPP 128
+ + H ++ LK P
Sbjct: 65 VDVSEVVHSRAVEALKEAGP 84
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E+ V L + G + I A G+ + I V V+ G AD DGRL GD++LS++G+
Sbjct: 11 EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
S+ GL+ + + ++ R V + + K GA
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVAKQGA 99
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 113 GLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNG 172
G HKE P + +K G+G S+ K + + VK + GG A+ +G
Sbjct: 4 GSDHKE--------PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDG 55
Query: 173 QLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
+L AGD++L+++ + +S+ A L+ +
Sbjct: 56 RLAAGDQLLSVDGRSLVGLSQERAAELMTR 85
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V+HR G +G + GG E I + +++G PAD G L+KGD+ILS+NG ++
Sbjct: 15 IVIHRGSTG--LGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 114 LTHKESLAILK 124
+H+++ LK
Sbjct: 71 ASHEQAAIALK 81
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P I + + GLGF++ GG+ + + + I GG A+ +G+L+ GD+IL++N V
Sbjct: 12 PRRIVIHRGSTGLGFNIVGGEXG----EGIFISFILAGGPADLSGELRKGDQILSVNGVD 67
Query: 188 VTEMSRIEAWSLLK 201
+ S +A LK
Sbjct: 68 LRNASHEQAAIALK 81
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAG---GSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
SE V L +++ G +GIT+AG E I V + + + DGR+Q GD+I++
Sbjct: 3 SETFDVELTKNVQG--LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIA 60
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
++G +++G T+++++ +L+ G V +TL++ G
Sbjct: 61 VDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V++L D G +GI++ GG ++ I + ++ G PADR G L GD IL++NG +++
Sbjct: 13 VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
Query: 113 GLTHKESLAILKR 125
HKE++ IL +
Sbjct: 70 DTKHKEAVTILSQ 82
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
GP ++ L+K D GLG S+ GGK+ P+ + +I G A++ G L GD IL +N
Sbjct: 8 GPIRKVLLLKEDHEGLGISITGGKEHGV---PILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + EA ++L +
Sbjct: 65 GVNLRDTKHKEAVTILSQ 82
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E+ V L + G + I A G+ + I V V+ G AD DGRL GD++LS++G+
Sbjct: 5 EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
S+ GL+ + + ++ R V + + K GA
Sbjct: 64 SLVGLSQERAAELMTRTSSVVTLEVAKQGA 93
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P + +K G+G S+ K + + VK + GG A+ +G+L AGD++L+++
Sbjct: 4 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 187 PVTEMSRIEAWSLLKK 202
+ +S+ A L+ +
Sbjct: 64 SLVGLSQERAAELMTR 79
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E+ V L + G + I A G+ + I V V+ G AD DGRL GD++LS++G+
Sbjct: 5 EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
S+ GL+ + + ++ R V + + K GA
Sbjct: 64 SLVGLSQERAAELMTRTSSVVTLEVAKQGA 93
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P + +K G+G S+ K + + VK + GG A+ +G+L AGD++L+++
Sbjct: 4 PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 63
Query: 187 PVTEMSRIEAWSLLKK 202
+ +S+ A L+ +
Sbjct: 64 SLVGLSQERAAELMTR 79
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V++L D G +GI++ GG ++ I + ++ G PADR G L GD IL++NG +++
Sbjct: 6 VLLLKEDHEG--LGISITGGKEH-GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 62
Query: 113 GLTHKESLAILKR 125
HKE++ IL +
Sbjct: 63 DTKHKEAVTILSQ 75
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
GP ++ L+K D GLG S+ GGK+ P+ + +I G A++ G L GD IL +N
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHGV---PILISEIHPGQPADRCGGLHVGDAILAVN 57
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + EA ++L +
Sbjct: 58 GVNLRDTKHKEAVTILSQ 75
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E V LHR PG GI ++GG D ++S E I + V+ G PA+ G+LQ+ DR+
Sbjct: 7 EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG SM + H ++ L++ G +IT+
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 137 GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
G G G ++ GG+D+P G+ + + + GG AE GQL+ D + +N V + +
Sbjct: 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEH 75
Query: 194 IEAWSLLKK 202
A L+K
Sbjct: 76 AFAVQQLRK 84
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E+ V L + G + I A G+ + I V V+ G AD DGRL GD++LS++G+
Sbjct: 11 EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 69
Query: 110 SMKGLTHKESLAILKRGPP-VEITLIKDGA 138
S+ GL+ + + ++ R V + + K GA
Sbjct: 70 SLVGLSQERAAELMTRTSSVVTLEVAKQGA 99
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 120 LAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE 179
L L++ P + +K G+G S+ K + + VK + GG A+ +G+L AGD+
Sbjct: 3 LGSLRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQ 62
Query: 180 ILTINNVPVTEMSRIEAWSLLKK 202
+L+++ + +S+ A L+ +
Sbjct: 63 LLSVDGRSLVGLSQERAAELMTR 85
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
I V +I A+ DGR+ KGDR+L++NG S++G THK+++ L+ V L++ G
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 96
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 124 KRGPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
K G E+ L K LG S+ +GG ++ + VK I G AE +G++ GD
Sbjct: 1 KPGDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGD 60
Query: 179 EILTINNVPVTEMSRIEAWSLLK 201
+L +N V + + +A L+
Sbjct: 61 RVLAVNGVSLEGATHKQAVETLR 83
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
T E VVLHR G +G + GG D E I + +++G PAD G L+KGDRI+S+N
Sbjct: 2 TREPRKVVLHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDRIISVN 57
Query: 108 GKSMK 112
++
Sbjct: 58 SVDLR 62
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P ++ L + GLGF++ GG+D + + + I GG A+ +G+L+ GD I+++N+V
Sbjct: 5 PRKVVLHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDRIISVNSV 59
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E V LHR PG GI ++GG D ++S E I + V+ G PA+ G+LQ+ DR+
Sbjct: 10 EQHTVTLHR-APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 66
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG SM + H ++ L++ G +IT+
Sbjct: 67 MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 96
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 137 GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
G G G ++ GG+D+P G+ + + + GG AE GQL+ D + +N V + +
Sbjct: 21 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEH 78
Query: 194 IEAWSLLKK 202
A L+K
Sbjct: 79 AFAVQQLRK 87
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G +L GG +Y + ++ V ++ PA+R G+++ GD IL ING++ K + H ++ ++K
Sbjct: 38 GFSLRGGREY-NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKN 96
Query: 126 G 126
G
Sbjct: 97 G 97
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ L + G GFSL GG++ + L V ++ G AE++G+++ GDEIL IN
Sbjct: 28 VELERGAKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKN 84
Query: 191 MSRIEAWSLLK 201
M A L+K
Sbjct: 85 MKHSRAIELIK 95
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 61 PGNSVGITLAGGSDYESK--------EITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
P S+GI++ GG S+ I + V+ +PA ++G L+ GDRI+ ++G ++
Sbjct: 14 PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 73
Query: 113 GLTHKESL-AILKRGPPV 129
+H++++ AI K G PV
Sbjct: 74 DASHEQAVEAIRKAGNPV 91
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
I G G+G L G+ + + +K + A KNG LK GD I+ ++ + + + S
Sbjct: 22 IVGGRGMGSRLSNGEVM----RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 77
Query: 194 IEAWSLLKK 202
+A ++K
Sbjct: 78 EQAVEAIRK 86
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
T E VVLHR G +G + GG D E I + +++G PAD G L+KGDRI+S+N
Sbjct: 5 TREPRKVVLHRGSTG--LGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDRIISVN 60
Query: 108 GKSMK 112
++
Sbjct: 61 SVDLR 65
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P ++ L + GLGF++ GG+D + + + I GG A+ +G+L+ GD I+++N+V
Sbjct: 8 PRKVVLHRGSTGLGFNIVGGEDG----EGIFISFILAGGPADLSGELRKGDRIISVNSV 62
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 61 PGNSVGITLAGGSDYESK--------EITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
P S+GI++ GG S+ I + V+ +PA ++G L+ GDRI+ ++G ++
Sbjct: 34 PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLR 93
Query: 113 GLTHKESL-AILKRGPPV 129
+H++++ AI K G PV
Sbjct: 94 DASHEQAVEAIRKAGNPV 111
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
I G G+G L G+ + + +K + A KNG LK GD I+ ++ + + + S
Sbjct: 42 IVGGRGMGSRLSNGEVM----RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH 97
Query: 194 IEAWSLLKK 202
+A ++K
Sbjct: 98 EQAVEAIRK 106
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
D GLG S++GG+++ P+ + KIF G A++ L GD IL++N ++ + E
Sbjct: 10 DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 66
Query: 196 AWSLLKKLNDGTIQDIKAL 214
A LKK + ++K +
Sbjct: 67 AVQALKKTGKEVVLEVKYM 85
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 RDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
R +GI++ GG + I + K+ G AD+ L GD ILS+NG+ + TH
Sbjct: 7 RKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 65
Query: 118 ESLAILKR 125
E++ LK+
Sbjct: 66 EAVQALKK 73
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
D GLG S++GG+++ P+ + KIF G A++ L GD IL++N ++ + E
Sbjct: 10 DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 66
Query: 196 AWSLLKKLNDGTIQDIKAL 214
A LKK + ++K +
Sbjct: 67 AVQALKKTGKEVVLEVKYM 85
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 RDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
R +GI++ GG + I + K+ G AD+ L GD ILS+NG+ + TH
Sbjct: 7 RKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 65
Query: 118 ESLAILKR 125
E++ LK+
Sbjct: 66 EAVQALKK 73
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 54 VVLHRDLPGNSVGITLAGGS------DYESKE-ITVHKVISGTPADRDGRLQKGDRILSI 106
+VLHRD S+G + GG D S E I V K++ PA ++G LQ DRI+ +
Sbjct: 12 LVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Query: 107 NGKSMKGLTHKESLAILKRGP-PVEITLIKDGAG 139
NG+ + TH +++ K P+ + +++ +G
Sbjct: 70 NGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 131 ITLIKDGAGLGFSLEGGKDS-----PFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+ L +D LGF++ GG+ S + + V KI G A K G L+ D I+ +N
Sbjct: 12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 186 VPVTEMSRIEAWSLLK 201
++ + +A K
Sbjct: 72 RDLSRATHDQAVEAFK 87
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
D GLG S++GG+++ P+ + KIF G A++ L GD IL++N ++ + E
Sbjct: 14 DAGGLGISIKGGRENKM---PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE 70
Query: 196 AWSLLKKLNDGTIQDIKAL 214
A LKK + ++K +
Sbjct: 71 AVQALKKTGKEVVLEVKYM 89
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 58 RDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
R +GI++ GG + I + K+ G AD+ L GD ILS+NG+ + TH
Sbjct: 11 RKADAGGLGISIKGGRE-NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 69
Query: 118 ESLAILKR 125
E++ LK+
Sbjct: 70 EAVQALKK 77
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ GG SP GD P+ + + G A + +L+ GD I+TI M+ +A +L
Sbjct: 38 LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNL 97
Query: 200 LKKLNDGTIQ 209
LK + G+I+
Sbjct: 98 LKNAS-GSIE 106
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 61 PGNSVGITLAGGSDYESKEITVHKVI---SGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
P +S+GI++AGG ++ + + +G A +L+ GDRI++I G S +G+TH
Sbjct: 34 PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQ-KLRVGDRIVTICGTSTEGMTHT 92
Query: 118 ESLAILKRGP-PVEITLIKDG 137
+++ +LK +E+ ++ G
Sbjct: 93 QAVNLLKNASGSIEMQVVAGG 113
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G + GG+D Y S + I V ++ A DGRLQ+GD+ILS+NG+ +K L H++++
Sbjct: 20 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 121 AILK 124
+ +
Sbjct: 80 DLFR 83
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI L + +GLGF++ GG D + D + V +I G A +G+L+ GD+IL++N
Sbjct: 10 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 69
Query: 188 VTEMSRIEAWSLLK 201
+ + +A L +
Sbjct: 70 LKNLLHQDAVDLFR 83
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 65 VGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
+G + GG+D Y S + I V ++ A DGRLQ+GD+ILS+NG+ +K L H++++
Sbjct: 22 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 121 AILK 124
+ +
Sbjct: 82 DLFR 85
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI L + +GLGF++ GG D + D + V +I G A +G+L+ GD+IL++N
Sbjct: 12 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 71
Query: 188 VTEMSRIEAWSLLK 201
+ + +A L +
Sbjct: 72 LKNLLHQDAVDLFR 85
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 63 NSVGITLAGGSD--YESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE 118
+ +G + GG+D Y S + I V ++ A DGRLQ+GD+ILS+NG+ +K L H++
Sbjct: 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87
Query: 119 SLAILK 124
++ + +
Sbjct: 88 AVDLFR 93
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI L + +GLGF++ GG D + D + V +I G A +G+L+ GD+IL++N
Sbjct: 20 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 79
Query: 188 VTEMSRIEAWSLLK 201
+ + +A L +
Sbjct: 80 LKNLLHQDAVDLFR 93
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
PG +G+++ G + + V ++ G AD DGRL +GD+IL +NG+ ++ T +
Sbjct: 14 PGKGLGLSIVGKRN--DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVA 71
Query: 121 AILK 124
A+LK
Sbjct: 72 ALLK 75
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI 194
K G GLG S+ G ++ D + V I GG A+ +G+L GD+IL +N V ++
Sbjct: 13 KPGKGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ- 67
Query: 195 EAWSLLKKLNDGTI 208
EA + L K + GT+
Sbjct: 68 EAVAALLKCSLGTV 81
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI 194
++ GLG S++GG+++ P+ + KIF G A+++ L+ GD IL++N + + +
Sbjct: 12 QEAGGLGISIKGGREN---RMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHD 68
Query: 195 EAWSLLKKLNDGTIQDIK 212
+A LK+ + ++K
Sbjct: 69 QAVQALKRAGKEVLLEVK 86
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+GI++ GG + I + K+ G AD+ L+ GD ILS+NG ++ TH +++ LK
Sbjct: 17 LGISIKGGRE-NRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 125 RG 126
R
Sbjct: 76 RA 77
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 61 PGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHK 117
P +G ++ G E I V ++ G+ A RDGRL++ D+IL+ING+++ + +TH+
Sbjct: 30 PSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQ 89
Query: 118 ESLAILKRGPPVEITLIKDGA 138
++++IL++ +I G+
Sbjct: 90 QAISILQKAKDTVQLVIARGS 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 12/108 (11%)
Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCA 168
K+M H E +LK PP GLGFS+ G + G+ + V++I G A
Sbjct: 13 KNMAQGRHVEVFELLK--PP--------SGGLGFSVVGLRSENRGELGIFVQEIQEGSVA 62
Query: 169 EKNGQLKAGDEILTINNVPVTE-MSRIEAWSLLKKLNDGTIQDIKALG 215
++G+LK D+IL IN + + ++ +A S+L+K D T+Q + A G
Sbjct: 63 HRDGRLKETDQILAINGQALDQTITHQQAISILQKAKD-TVQLVIARG 109
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 36 DEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDG 95
D+ G P+ +PG V L +D N +GI++ GG+ Y + + +V TPA DG
Sbjct: 12 DKLGIPT--VPGK-----VTLQKDAQ-NLIGISIGGGAQY-CPCLYIVQVFDNTPAALDG 62
Query: 96 RLQKGDRILSINGKSMKGLTHKESLAILKR 125
+ GD I +NG+S+KG T E +++
Sbjct: 63 TVAAGDEITGVNGRSIKGKTKVEVAKMIQE 92
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 118 ESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
E+L + +R +T+ K D GLG S++GG+++ P+ + KIF G A++ L
Sbjct: 72 EALLLQRR----RVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFV 124
Query: 177 GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK 212
GD IL++N ++ + EA LKK + ++K
Sbjct: 125 GDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 160
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 55 VLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGL 114
V R +GI++ GG + + I + K+ G AD+ L GD ILS+NG+ +
Sbjct: 81 VTVRKADAGGLGISIKGGRENK-MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSA 139
Query: 115 THKESLAILKR 125
TH E++ LK+
Sbjct: 140 THDEAVQALKK 150
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 37 EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADR 93
E C +L + + ++++ + D +G++L G E+ I + +I G A +
Sbjct: 11 EPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFK 70
Query: 94 DGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVE 130
DGRL+ D+++++NG+++ G ++ E++ L+R +E
Sbjct: 71 DGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME 107
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 129 VEITLIKDG-AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI L G AGLG SL+G K G D + +K I GG A K+G+L+ D+++ +N
Sbjct: 27 LEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGE 86
Query: 187 PVTEMSRIEAWSLLKK 202
+ S EA L++
Sbjct: 87 TLLGKSNHEAMETLRR 102
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 44 LIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRI 103
++PG V L +D N +GI++ GG+ Y + + +V TPA DG + GD I
Sbjct: 23 MVPGK-----VTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEI 75
Query: 104 LSINGKSMKGLTHKESLAILK 124
+NG+S+KG T E +++
Sbjct: 76 TGVNGRSIKGKTKVEVAKMIQ 96
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
++ GA GF+L+GG + +PLTV KI GG A + +++ GDE++ IN P+ SR
Sbjct: 17 LQGGAPWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SR 72
Query: 194 IEAWSLLK 201
EA L+K
Sbjct: 73 QEALILIK 80
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G G TL GG ++ + +TV K+ G A +++ GD +++ING + G + +E+L
Sbjct: 20 GAPWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALI 77
Query: 122 ILK 124
++K
Sbjct: 78 LIK 80
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ EV +V L R +G ++ GGS++ I V V G+ A+++G L+ GD+IL +N
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 108 GKSMKGLTHKESLAILK 124
KS+ +TH E++ LK
Sbjct: 64 DKSLARVTHAEAVKALK 80
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
V + K GLGFS+ GG + G + V + G AEK G L+ GD+IL +N+ +
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEHGVG---IYVSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67
Query: 189 TEMSRIEAWSLLK 201
++ EA LK
Sbjct: 68 ARVTHAEAVKALK 80
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
V V L R G +G+ + + + + ++ G+PA DGRL GDRIL +NG S
Sbjct: 9 VFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
Query: 111 MKGLTHKESLAILKRG 126
+ GL + ++ +++ G
Sbjct: 69 LLGLGYLRAVDLIRHG 84
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
L+RGP +GLG L G + G L ++ + G A +G+L GD IL
Sbjct: 14 LERGP----------SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILE 63
Query: 183 INNVPVTEMSRIEAWSLLK 201
+N + + + A L++
Sbjct: 64 VNGSSLLGLGYLRAVDLIR 82
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ ++I G+PADR +L+ GDRIL++NG+S+ + H + + ++K
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK 89
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTVK----KIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
K+ G GF + + P +TV +I G A++ +LK GD IL +N +
Sbjct: 19 KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78
Query: 191 MSRIEAWSLLK 201
M + L+K
Sbjct: 79 MPHADIVKLIK 89
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V L +D N +GI++ GG+ Y + + +V TPA DG + GD I +NG+S+KG
Sbjct: 6 VTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 63
Query: 114 LTHKESLAILK 124
T E +++
Sbjct: 64 KTKVEVAKMIQ 74
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 127 PPVEITLIKD-------GAGLGFSLEGGKDSP--FGDQPLTVKKIFTGGCAEKNGQLKAG 177
P I + +D G GLG + GGK+ P G+ + KI GG AE+ G+L G
Sbjct: 12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
++L N +P+T + E S++ +
Sbjct: 72 MQVLEWNGIPLTSKTYEEVQSIISQ 96
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V L +D N +GI++ GG+ Y + + +V TPA DG + GD I +NG+S+KG
Sbjct: 9 VTLQKD-AQNLIGISIGGGAQY-CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKG 66
Query: 114 LTHKESLAILK 124
T E +++
Sbjct: 67 KTKVEVAKMIQ 77
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
PG+++GI+L S IT+ ++ + DR G L GD ILSI+G SM+ + E+
Sbjct: 25 PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEAT 84
Query: 121 AIL 123
+L
Sbjct: 85 KLL 87
Score = 32.7 bits (73), Expect = 0.50, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P+ + ++K G+ LG SL S +T+ +I +++G L GD IL+I+
Sbjct: 16 PLMVEIVKTPGSALGISLT--TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ S +EA LL +++
Sbjct: 74 SMEHCSLLEATKLLASISE 92
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 65 VGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
+G+++ G E+ I V +I+G A +DGRL+ D+++++NG+S+ G ++E++
Sbjct: 23 LGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAME 82
Query: 122 ILKRGPPVE 130
L+R E
Sbjct: 83 TLRRSMSTE 91
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 130 EITLIKDG-AGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
E+ L G AGLG S++G + D + VK I GG A K+G+L+ D+++ +N
Sbjct: 12 EVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGES 71
Query: 188 VTEMSRIEAWSLLKK 202
+ + EA L++
Sbjct: 72 LLGKANQEAMETLRR 86
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 65 VGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
+G+++ G E+ I V +I+G A +DGRL+ D+++++NG+S+ G ++E++
Sbjct: 20 LGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAME 79
Query: 122 ILKRGPPVE 130
L+R E
Sbjct: 80 TLRRSMSTE 88
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 130 EITLIKDG-AGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
E+ L G AGLG S++G + D + VK I GG A K+G+L+ D+++ +N
Sbjct: 9 EVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGES 68
Query: 188 VTEMSRIEAWSLLKK 202
+ + EA L++
Sbjct: 69 LLGKANQEAMETLRR 83
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
V V+ G ADR G ++KGDRIL +NG +++G THK+ + +++ G
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 126 GPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQ---PLT-VKKIFTGGCAEKNGQLKA 176
G P + ++K +G GF++ EGG+ + PL V + GG A++ G ++
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLK 201
GD IL +N V V + + L++
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
V V+ G ADR G ++KGDRIL +NG +++G THK+ + +++ G
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 126 GPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQ---PLT-VKKIFTGGCAEKNGQLKA 176
G P + ++K +G GF++ EGG+ + PL V + GG A++ G ++
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLK 201
GD IL +N V V + + L++
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
V V+ G ADR G ++KGDRIL +NG +++G THK+ + +++ G
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAG 90
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 126 GPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQ---PLT-VKKIFTGGCAEKNGQLKA 176
G P + ++K +G GF++ EGG+ + PL V + GG A++ G ++
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLK 201
GD IL +N V V + + L++
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 61 PGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
P S+GI++ GG E K I + +V+ +PA + L+ GD+IL ++G ++
Sbjct: 25 PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQ 84
Query: 113 GLTHKESL-AILKRGPPV 129
+H E++ AI G PV
Sbjct: 85 NASHSEAVEAIKNAGNPV 102
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 126 GPPVEITLIKD-GAGLGFSLEGG----KDSPFGDQ--PLTVKKIFTGGCAEKNGQLKAGD 178
GPP + + ++ LG S+ GG K G++ + +K++ A K LK GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 179 EILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL 214
+IL ++ V + S EA +K + + +++L
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSL 109
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
GLGF ++ P P+ + + GG AE++G ++AGD IL +N+ P+ ++S A
Sbjct: 13 GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 68
Query: 198 SLLKKLNDGT 207
+L+ + T
Sbjct: 69 EVLRGIASET 78
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD---YESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E V L +D GI ++GG D +E+ E I + V+ G PAD G LQ+ DR++
Sbjct: 14 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVV 70
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLIK 135
+NG M+ + H ++ L++ + ++K
Sbjct: 71 MVNGTPMEDVLHSFAVQQLRKSGKIAAIVVK 101
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 131 ITLIKDGA-GLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+TL KD G G ++ GG+D+P G+ + + + GG A+ G L+ D ++ +N
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGT 75
Query: 187 PVTEMSRIEAWSLLKK 202
P+ ++ A L+K
Sbjct: 76 PMEDVLHSFAVQQLRK 91
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
GLGF ++ P P+ + + GG AE++G ++AGD IL +N+ P+ ++S A
Sbjct: 15 GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 70
Query: 198 SLLKKLNDGT 207
+L+ + T
Sbjct: 71 EVLRGIASET 80
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated Peptide
Length = 127
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
GLGF ++ P P+ + + GG AE++G ++AGD IL +N+ P+ ++S A
Sbjct: 20 GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 75
Query: 198 SLLKKLNDGT 207
+L+ + T
Sbjct: 76 EVLRGIASET 85
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 62 GNSVGITLAGGSDYESKEIT--VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G +G+ + GG ES + + KV G+ AD G L+ GD +L NG+ ++G T +E
Sbjct: 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEV 106
Query: 120 LAIL---KRGPPVEITLIKDGAGLG 141
I+ K P VE+ + + G G
Sbjct: 107 YNIILESKPEPQVELVVSRSGPSSG 131
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
GA LG + GGK + G + K+ G A+ G L+ GDE+L N
Sbjct: 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWN 94
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAG---GSD--YESKEITVHKVISGTPADRDGRLQKGD 101
G E+ V L +D G +GI++ G G+D E I V V G A RDGR+Q D
Sbjct: 1 GHMELFPVELEKDEDG--LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVND 58
Query: 102 RILSINGKSMKGLTHKESLAILK 124
+I+ ++G S+ G+T + +L+
Sbjct: 59 QIVEVDGISLVGVTQNFAATVLR 81
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE L KD GLG S+ G G D+ + VK + GG A+++G+++ D+I+ ++
Sbjct: 7 PVE--LEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 64
Query: 185 NVPVTEMSRIEAWSLLK 201
+ + +++ A ++L+
Sbjct: 65 GISLVGVTQNFAATVLR 81
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 54 VVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
V L R+ +S+GI+++G D E+ I V +I G+ A DGR++ D+IL ++
Sbjct: 16 VELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDV 75
Query: 110 SMKGLTHKESLAILKR-GPPV 129
+++G+ + + +L+ G PV
Sbjct: 76 NVQGMAQSDVVEVLRNAGNPV 96
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 47 GTSEVSVVVLHRDLPGNSVGIT-LAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRI 103
G E+ V L +D G + I + G+D E I V V G A RDGR+Q D +
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 104 LSINGKSMKGLTHKESLAILK 124
+ ++G S+ G+T + ++L+
Sbjct: 61 VEVDGTSLVGVTQSFAASVLR 81
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE L KD GLG S+ G G D + VK + GG A ++G+++ D ++ ++
Sbjct: 7 PVE--LEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 64
Query: 185 NVPVTEMSRIEAWSLLK 201
+ +++ A S+L+
Sbjct: 65 GTSLVGVTQSFAASVLR 81
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+G + TL K G GF++ GG D P D+ L VK + G A ++G+++ GD I+ IN
Sbjct: 17 KGTFLSTTLKKSNMGFGFTIIGG-DEP--DEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 185 NVPVTEMSRIEAWSLLKKLNDG-TIQDIKALGYDL 218
V V + + L + + G ++ + GY L
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G T+ GG D + + V VI PA +DG+++ GD I+ IN + G TH + + + +
Sbjct: 33 GFTIIGG-DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS 91
Query: 126 GP 127
P
Sbjct: 92 VP 93
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 127 PPVEIT-LIKDGAGLGFSLEGGKDSPFGD--QPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
P V+I L+KD GLGFS+ +D P + ++ + G AE++G L GD ++++
Sbjct: 14 PEVKIVELVKDCKGLGFSILDYQD-PLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 184 NNVPVTEMSRIEAWSLLKKLNDGTIQ 209
N + S EA +LK + G +
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPPGLVH 98
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYES------KEITVHKVISGTPADRDGRLQKGD 101
+ EV +V L +D G I DY+ I + +++ A+R G L GD
Sbjct: 13 SPEVKIVELVKDCKGLGFSIL-----DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGD 67
Query: 102 RILSINGKSMKGLTHKESLAILKRGPP 128
R++S+N + + E++ ILK PP
Sbjct: 68 RLVSVNEYCLDNTSLAEAVEILKAVPP 94
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G + GG D+ + I V KV A +D L+ GD I++ING+S +G+ H E+ + +++
Sbjct: 14 GFRITGGRDFHTP-IMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 126 GP-PVEITL 133
P P+ + L
Sbjct: 72 SPSPLRLQL 80
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ + ++ G PA++ G+L GD+I+SING S+ GL +I+K
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 75
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
+ + + GG AEK+G+L GD+I++IN + + S++K L +
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 79
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+G+++ GG ++ H +I G AD G LQ GD I+ ING S+ TH+E + +++
Sbjct: 98 LGLSVRGGLEFGCGLFISH-LIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIR 155
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT 158
V I + G L K SP D+PLT
Sbjct: 156 TEKTVSIKVRHIG------LIPVKSSP--DEPLT 181
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N + +E++
Sbjct: 18 GDSVGLRLAGGNDV---GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 73
Query: 122 I---LKRGPPVEI----------TLIKDGAGLGFSL----EGGKDSPFG 153
L +G V I +++ G F + E K+SP+G
Sbjct: 74 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYG 122
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P +++ + G +G L GG D + V + A K G L+ GD+IL +NNV
Sbjct: 8 PSMKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNV 61
Query: 187 PVTEMSRIEAWSLLKKLNDG 206
T + R EA L L G
Sbjct: 62 DFTNIIREEAVLFLLDLPKG 81
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 21/109 (19%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N + +E++
Sbjct: 10 GDSVGLRLAGGNDV---GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 65
Query: 122 I---LKRGPPVEI----------TLIKDGAGLGF----SLEGGKDSPFG 153
L +G V I +++ G F E K+SP+G
Sbjct: 66 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYG 114
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+++ + G +G L GG D + V + A K G L+ GD+IL +NNV
Sbjct: 2 MKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
Query: 189 TEMSRIEAWSLLKKLNDG 206
T + R EA L L G
Sbjct: 56 TNIIREEAVLFLLDLPKG 73
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G + GG D+ + I V KV A +D L+ GD I++ING+S +G+ H E+ + +++
Sbjct: 15 GFRITGGRDFHTP-IMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 126 GP-PVEITL 133
P P+ + L
Sbjct: 73 SPSPLRLQL 81
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N + +E++
Sbjct: 11 GDSVGLRLAGGNDV---GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 66
Query: 122 IL 123
L
Sbjct: 67 FL 68
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P +++ + G +G L GG D + V + A K G L+ GD+IL +NNV
Sbjct: 1 PSMKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNV 54
Query: 187 PVTEMSRIEAWSLLKKLNDG 206
T + R EA L L G
Sbjct: 55 DFTNIIREEAVLFLLDLPKG 74
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 54 VVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVI----SGTPADRDGRLQKGDRILSIN 107
+V+H G + G T+ Y +S TVH ++ G+PA + G L+ GD I IN
Sbjct: 5 IVIHSS--GKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAG-LKAGDLITHIN 61
Query: 108 GKSMKGLTHKESLA-ILKRGPPVEIT 132
G+ + GL H E + +LK G V IT
Sbjct: 62 GEPVHGLVHTEVIELLLKSGNKVSIT 87
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVIS----GTPADRDGRLQKGDRIL 104
+E + VVL D P GI L G S + ++ ++ +IS +PA+R G LQ GDR++
Sbjct: 14 TETTEVVLTAD-PVTGFGIQLQG-SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 71
Query: 105 SINGKSMKGLTHKESLAILK 124
+ING + T +E+ +L+
Sbjct: 72 AINGIPTEDSTFEEANQLLR 91
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 114 LTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT----VKKIFTGGCAE 169
+ H E+ ++ PV G G L+G S F + L+ + I AE
Sbjct: 11 VVHTETTEVVLTADPV--------TGFGIQLQG---SVFATETLSSPPLISYIEADSPAE 59
Query: 170 KNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
+ G L+ GD ++ IN +P + + EA LL+
Sbjct: 60 RCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 91
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G S+G+T+ GG++Y I + V G+ A+ G L+ GD+IL +NG+S + H E++
Sbjct: 31 GRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVR 88
Query: 122 ILKRGPPVEITLIKD 136
+LK + +T +KD
Sbjct: 89 LLKSSRHLILT-VKD 102
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 117 KESLAILKRGPPVEITLI-KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK 175
+ +L +L+ G ++ L+ DG LG ++ GG + G + + + G AE +G LK
Sbjct: 10 RSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLG---IYITGVDPGSEAEGSG-LK 65
Query: 176 AGDEILTINNVPVTEMSRIEAWSLLK 201
GD+IL +N + EA LLK
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLK 91
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVI----SGTPADRDGRLQKG 100
G S +++HR G G TL Y +S TVH ++ G PA G L++G
Sbjct: 1 GGSMRPPIIIHR--AGKKYGFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAG-LRQG 57
Query: 101 DRILSINGKSMKGLTHKESLA-ILKRGPPVEIT 132
D I +NG+ + GL H E + ILK G V I+
Sbjct: 58 DLITHVNGEPVHGLVHTEVVELILKSGNKVAIS 90
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+++ L + +G GF + GG D P QP+ + + G A+++G+L GDE++ ++ +PV
Sbjct: 11 LDVHLRRMESGFGFRILGG-DEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 72 GSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
G D + I + VI+ ADRDGRL GD ++ ++G + G TH+
Sbjct: 28 GGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR 73
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ + ++ G PA++ G+L GD+I+SING S+ GL +I+K
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 79
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
+ + + GG AEK+G+L GD+I++IN + + S++K L +
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 83
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ + KD G GF++ G D+ + V+ + GG A K G +K GD I+ +N VT
Sbjct: 12 VIIQKDQHGFGFTVSG-------DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTN 63
Query: 191 MSRIEAWSLLK 201
S +E L+K
Sbjct: 64 SSHLEVVKLIK 74
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 47 GTSEVS-VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
G+S V V++ +D G G T++G + + V V G A + G +++GDRI+
Sbjct: 4 GSSGVQRCVIIQKDQHG--FGFTVSG-----DRIVLVQSVRPGGAAMKAG-VKEGDRIIK 55
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
+NG + +H E + ++K G V +TL+
Sbjct: 56 VNGTMVTNSSHLEVVKLIKSGAYVALTLL 84
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGG---SDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
+E + VVL D P + G+ L GG ++ S V + +PA+R G LQ GDR+LS
Sbjct: 14 TETTEVVLCGD-PLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 72
Query: 106 INGKSMKGLTHKESLAILK 124
ING + + T +E+ +L+
Sbjct: 73 INGIATEDGTMEEANQLLR 91
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 114 LTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG--KDSPFGDQPLTVKKIFTGGCAEKN 171
+ H E+ ++ G P+ +G G L+GG PL V I AE+
Sbjct: 11 IVHTETTEVVLCGDPL--------SGFGLQLQGGIFATETLSSPPL-VCFIEPDSPAERC 61
Query: 172 GQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
G L+ GD +L+IN + + + EA LL+
Sbjct: 62 GLLQVGDRVLSINGIATEDGTMEEANQLLR 91
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N + +E++
Sbjct: 38 GDSVGLRLAGGNDV---GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 93
Query: 122 ILKRGPPVE 130
L P E
Sbjct: 94 FLLDLPKGE 102
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P +++ + G +G L GG D + V + A K G L+ GD+IL +NNV
Sbjct: 28 PSMKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNV 81
Query: 187 PVTEMSRIEAWSLLKKLNDG 206
T + R EA L L G
Sbjct: 82 DFTNIIREEAVLFLLDLPKG 101
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVIS----GTPADRDGRLQKGDRIL 104
+E + VVL D P GI L G S + ++ ++ +IS +PA+R G LQ GDR++
Sbjct: 5 TETTEVVLTAD-PVTGFGIQLQG-SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVM 62
Query: 105 SINGKSMKGLTHKESLAILK 124
+ING + T +E+ +L+
Sbjct: 63 AINGIPTEDSTFEEANQLLR 82
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
Query: 114 LTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT----VKKIFTGGCAE 169
+ H E+ ++ PV G G L+G S F + L+ + I AE
Sbjct: 2 VVHTETTEVVLTADPV--------TGFGIQLQG---SVFATETLSSPPLISYIEADSPAE 50
Query: 170 KNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
+ G L+ GD ++ IN +P + + EA LL+
Sbjct: 51 RCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 82
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 50 EVSVVVLHRDLPG---NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
E+ V L +D G + +G+ + + E I V V G A RDGR+Q D+I+ +
Sbjct: 9 ELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
Query: 107 NGKSMKGLTHKESLAILK 124
+G S+ G+T + +L+
Sbjct: 69 DGISLVGVTQNFAATVLR 86
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE+ KD GLG S+ G G D+ + VK + GG A+++G+++ D+I+ ++
Sbjct: 12 PVELE--KDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 69
Query: 185 NVPVTEMSRIEAWSLLK 201
+ + +++ A ++L+
Sbjct: 70 GISLVGVTQNFAATVLR 86
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N + +E++
Sbjct: 13 GDSVGLRLAGGNDV---GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 68
Query: 122 ILKRGPPVE 130
L P E
Sbjct: 69 FLLDLPKGE 77
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 126 GP-PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
GP +++ + G +G L GG D + V + A K G L+ GD+IL +N
Sbjct: 1 GPGSMKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVN 54
Query: 185 NVPVTEMSRIEAWSLLKKLNDG 206
NV T + R EA L L G
Sbjct: 55 NVDFTNIIREEAVLFLLDLPKG 76
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+I L + G GF + GG + +P+ + I G A+ +G+L++GDE+++++ PV
Sbjct: 5 DIFLWRKETGFGFRILGGNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G + GG++ + I + ++ AD DGRL+ GD ++S++G + G +H+ + ++++
Sbjct: 16 GFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQ 74
Query: 126 G 126
Sbjct: 75 A 75
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 132 TLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
T+ KD GA LG + GGK + G + K+ G A+ G L+AGDE+L N P+
Sbjct: 30 TMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPG 89
Query: 191 MSRIEAWSLL 200
+ E ++++
Sbjct: 90 ATNEEVYNII 99
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 62 GNSVGITLAGG--SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G +G+ + GG +D + KV G+ AD G L+ GD +L NGK + G T++E
Sbjct: 36 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95
Query: 120 LAIL---KRGPPVEITL 133
I+ K P VEI +
Sbjct: 96 YNIILESKSEPQVEIIV 112
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL 120
P +G ++ GGS++ I V KV G+ A+R G L GD+I +NG S++ T ++
Sbjct: 20 PAGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAV 77
Query: 121 AILKRGPPVEITLIKDGAG 139
+L + + + + G+G
Sbjct: 78 KVLTSSSRLHMMVRRMGSG 96
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+G+ + + E I V V G A RDGR+Q D+I+ ++G S+ G+T + +L+
Sbjct: 98 IGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR 157
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE+ KD GLG S+ G G D+ + VK + GG A+++G+++ D+I+ ++
Sbjct: 83 PVELE--KDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVD 140
Query: 185 NVPVTEMSRIEAWSLLK 201
+ + +++ A ++L+
Sbjct: 141 GISLVGVTQNFAATVLR 157
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + ++ G DGR++ GD +L +N + + +++ +++
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 122 ILK----RGPPVEITLIKDGAGLG 141
+L+ + P+ +T+ K G G G
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGGSG 100
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ MS +A +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 200 LKKL 203
L+ +
Sbjct: 78 LRDI 81
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE-MSRIEA 196
GLGFS+ + G + VK + G A+++ +LK D+IL IN+ P+ + +S +A
Sbjct: 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQA 96
Query: 197 WSLLKK 202
+LL++
Sbjct: 97 IALLQQ 102
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHKESLAILKR 125
+I V V G+ ADRD RL++ D+IL+IN + + ++H++++A+L++
Sbjct: 55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ 102
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ + +++G PA R G+L GD+I+SING S+ GL I+K
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 262
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + ++ G DGR++ GD +L +N + + +++ +++
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 122 ILK----RGPPVEITLIKDGAG 139
+L+ + P+ +T+ K G G
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGG 98
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ MS +A +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 200 LKKL 203
L+ +
Sbjct: 78 LRDI 81
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 144 LEGGKDSPFGD------QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
+E +D P G + + +I GG AEK+G L GDE+L IN + + E +
Sbjct: 31 IEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVF 90
Query: 198 SLLKKLNDGTI 208
LL ++ GT+
Sbjct: 91 DLLSDMH-GTL 100
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 58 RDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
RD+P +G T+ E + + +++ G A++ G L +GD +L ING ++G
Sbjct: 35 RDIP---LGATVRN----EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN 87
Query: 118 ESLAIL 123
E +L
Sbjct: 88 EVFDLL 93
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 50 EVSVVVLHRDLPGNSVGIT-LAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSI 106
E+ V L +D G + I + G+D E I V V G A RDGR+Q D ++ +
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 107 NGKSMKGLTHKESLAILK 124
+G S+ G+T + ++L+
Sbjct: 140 DGTSLVGVTQSFAASVLR 157
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE+ KD GLG S+ G G D + VK + GG A ++G+++ D ++ ++
Sbjct: 83 PVELE--KDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140
Query: 185 NVPVTEMSRIEAWSLLK 201
+ +++ A S+L+
Sbjct: 141 GTSLVGVTQSFAASVLR 157
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ E+ V LH+ G +GI L +D + + ++ G A +DGRL DR+L+IN
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTDEPG--VFILDLLEGGLAAQDGRLSSNDRVLAIN 58
Query: 108 GKSMK-GLTHKESLAILKRGPPVEITLIKDG 137
G +K G + I G V +T+ + G
Sbjct: 59 GHDLKYGTPELAAQIIQASGERVNLTIARPG 89
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 50 EVSVVVLHRDLPGNSVGIT-LAGGSDY--ESKEITVHKVISGTPADRDGRLQKGDRILSI 106
E+ V L +D G + I + G+D E I V V G A RDGR+Q D ++ +
Sbjct: 80 ELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
Query: 107 NGKSMKGLTHKESLAILK 124
+G S+ G+T + ++L+
Sbjct: 140 DGTSLVGVTQSFAASVLR 157
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 128 PVEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
PVE+ KD GLG S+ G G D + VK + GG A ++G+++ D ++ ++
Sbjct: 83 PVELE--KDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVD 140
Query: 185 NVPVTEMSRIEAWSLLK 201
+ +++ A S+L+
Sbjct: 141 GTSLVGVTQSFAASVLR 157
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRI 194
+ GA LG + GGK + G + K+ G A+ G L+AGDE+L N P+ +
Sbjct: 34 ESGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNE 93
Query: 195 EAWSLL 200
E ++++
Sbjct: 94 EVYNII 99
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 62 GNSVGITLAGG--SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G +G+ + GG +D + KV G+ AD G L+ GD +L NGK + G T++E
Sbjct: 36 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95
Query: 120 LAIL---KRGPPVEITL 133
I+ K P VEI +
Sbjct: 96 YNIILESKSEPQVEIIV 112
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V + PG +G + GG + I + KVI + A R G LQ+GD++L++N +
Sbjct: 18 IVTLKKPPGAQLGFNIRGGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75
Query: 114 LTHKESLAILK 124
+ H +++ ILK
Sbjct: 76 IEHSKAVEILK 86
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P +TL K GA LGF++ GGK S G + + K+ A + G L+ GD++L +N+V
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLG---IFISKVIPDSDAHRAG-LQEGDQVLAVNDV 71
Query: 187 PVTEMSRIEAWSLLK 201
++ +A +LK
Sbjct: 72 DFQDIEHSKAVEILK 86
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 64 SVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE 118
S GI + G +S I + ++ +PA GRL+ GDRILS+NGK ++ T +
Sbjct: 18 SFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQA 77
Query: 119 SLAILKRG 126
+ ++K
Sbjct: 78 VIDLIKEA 85
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 141 GFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
GF L+GGKD + PLT+ +I G A ++ QL GD ++ I+ V M+ +EA + +
Sbjct: 14 GFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKI 69
Query: 201 K 201
K
Sbjct: 70 K 70
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ +T+ ++ G+ A + +L +GD +++I+G + +TH E+
Sbjct: 14 GFRLQGGKDFN-MPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEA 65
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
G +GIT++G ++ I + + G A+R G + GDRIL+IN S+KG E++
Sbjct: 15 GGPLGITISG-TEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIH 73
Query: 122 ILK 124
+L+
Sbjct: 74 LLQ 76
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ L + G LG ++ G + PF P+ + + GG AE+ G + GD IL IN+ +
Sbjct: 9 VELKRYGGPLGITISG-TEEPF--DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 65
Query: 191 MSRIEAWSLLKKLNDGTIQDIK 212
EA LL+ + IK
Sbjct: 66 KPLSEAIHLLQMAGETVTLKIK 87
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G T+ GG D + + + ++ PA DG+++ GD I+S+N + G TH + + I +
Sbjct: 14 GFTVVGG-DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 72
Query: 126 GP 127
P
Sbjct: 73 IP 74
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 141 GFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
GF L+GGKD + PLT+ +I G A ++ QL GD ++ I+ V M+ +EA + +
Sbjct: 21 GFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKI 76
Query: 201 K 201
K
Sbjct: 77 K 77
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ + +T+ ++ G+ A + +L +GD +++I+G + +TH E+
Sbjct: 21 GFRLQGGKDF-NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEA 72
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
A GF L+GGKD + PLT+ + GG A + ++ GD +L+I+ + M+ +EA
Sbjct: 15 APWGFRLQGGKDF---NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQ 70
Query: 198 SLLK 201
+ +K
Sbjct: 71 NKIK 74
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ + +T+ + G A + ++ GD +LSI+G S +G+TH E+
Sbjct: 18 GFRLQGGKDF-NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEA 69
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + ++ G DGR++ GD +L +N + + +++ +++
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 122 ILK----RGPPVEITLIKDGAG 139
+L+ + P+ +T+ K G G
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGG 98
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ MS +A +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 200 LKKL 203
L+ +
Sbjct: 78 LRDI 81
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + ++ G DGR++ GD +L +N + + +++ +++
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 122 ILK----RGPPVEITLIKDGAG 139
+L+ + P+ +T+ K G G
Sbjct: 77 VLRDIVHKPGPIVLTVAKSGGG 98
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ MS +A +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 200 LKKL 203
L+ +
Sbjct: 78 LRDI 81
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 46 PGTSEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPAD 92
P T+ V V +H+ G ++ G ++ GG D + K I V +V G PA+
Sbjct: 8 PVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE 67
Query: 93 RDGRLQKGDRILSINGKSMKGLTHKES 119
G LQ GD+I+ +NG M +TH ++
Sbjct: 68 IAG-LQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 49 SEVSVVVLHRDLPGNS--VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
SE+ +H L +S G T+ GG D + + + ++ PA DG+++ GD I+S+
Sbjct: 13 SELKGKFIHTKLRKSSRGFGFTVVGG-DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
Query: 107 NGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFG-DQPLT 158
N + G TH + + I + P GA + L G PF D P T
Sbjct: 72 NDTCVLGHTHAQVVKIFQSIPI--------GASVDLELCRGYPLPFDPDDPNT 116
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 46 PGTSEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPAD 92
P T+ V V +H+ G ++ G ++ GG D + K I V +V G PA+
Sbjct: 8 PVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE 67
Query: 93 RDGRLQKGDRILSINGKSMKGLTHKES 119
G LQ GD+I+ +NG M +TH ++
Sbjct: 68 IAG-LQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 46 PGTSEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPAD 92
P T+ V V +H+ G ++ G ++ GG D + K I V +V G PA+
Sbjct: 8 PVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE 67
Query: 93 RDGRLQKGDRILSINGKSMKGLTHKES 119
G LQ GD+I+ +NG M +TH ++
Sbjct: 68 IAG-LQIGDKIMQVNGWDMTMVTHDQA 93
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGG---SDYESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E+++ +L + +GI++AGG + Y+ + I + +V PA R G ++ GD++L
Sbjct: 4 ELTLTILRQT---GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLL 59
Query: 105 SINGKSMKGLTHKESLAILK 124
+NG +++G H E++ L+
Sbjct: 60 EVNGVALQGAEHHEAVEALR 79
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 131 ITLIKDGAGLGFSLEGGKDS-PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+T+++ GLG S+ GGK S P+ D+ + + ++ G A + G ++ GD++L +N V
Sbjct: 7 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVA 65
Query: 188 VTEMSRIEAWSLLK 201
+ EA L+
Sbjct: 66 LQGAEHHEAVEALR 79
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 46 PGTSEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPAD 92
P T+ V V +H+ G ++ G ++ GG D + K I V +V G PA+
Sbjct: 9 PVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAE 68
Query: 93 RDGRLQKGDRILSINGKSMKGLTHKES 119
G LQ GD+I+ +NG M +TH ++
Sbjct: 69 IAG-LQIGDKIMQVNGWDMTMVTHDQA 94
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 84 KVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA-ILKRGPPVEITLI 134
+V G PA + G +Q GDR++++ G+S++GL H+E+++ I +G V +T++
Sbjct: 36 EVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVV 86
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G + GG D + + V +V GTPAD RL +GD+++ ING+ + TH + + +K
Sbjct: 19 GFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 77
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
PLTV + GG A +G+L GD+IL +NN P ++S A +L++ D
Sbjct: 32 PLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAED 79
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 54 VVLHRDLPGNSVGITLAGGSDY--ESKEITVHKVI----SGTPADRDGRLQKGDRILSIN 107
+V+H G G +L Y +S TVH V+ G+PA G L+ GD I IN
Sbjct: 6 IVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHIN 62
Query: 108 GKSMKGLTHKESLAIL 123
G+S+ GL H + + +L
Sbjct: 63 GESVLGLVHMDVVELL 78
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G + GG D + + V +V GTPAD RL +GD+++ ING+ + TH + + +K
Sbjct: 30 GFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
A GF L+GGKD + PLT+ + GG A + ++ GD +L+I+ + M+ +EA
Sbjct: 13 APWGFRLQGGKDF---NMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQ 68
Query: 198 SLLK 201
+ +K
Sbjct: 69 NKIK 72
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ + +T+ + G A + ++ GD +LSI+G + +G+TH E+
Sbjct: 16 GFRLQGGKDF-NMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEA 67
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGL 114
+ ++ G PA+R G L GDR+ +ING S+ GL
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAINGTSLVGL 73
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGG---SDYESKE--ITVHKVISGTPADRDGRLQKGDRIL 104
E+++ +L + +GI++AGG + Y+ + I + +V PA R G ++ GD++L
Sbjct: 16 ELTLTILRQT---GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLL 71
Query: 105 SINGKSMKGLTHKESLAILK 124
+NG +++G H E++ L+
Sbjct: 72 EVNGVALQGAEHHEAVEALR 91
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 131 ITLIKDGAGLGFSLEGGKDS-PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+T+++ GLG S+ GGK S P+ D+ + + ++ G A + G ++ GD++L +N V
Sbjct: 19 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVA 77
Query: 188 VTEMSRIEAWSLLK 201
+ EA L+
Sbjct: 78 LQGAEHHEAVEALR 91
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ V G+PA R G L+ DR++ +NG++++GL H E +A +K
Sbjct: 32 IRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIK 73
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
Q TV +I GG + G L GDEIL IN VT S
Sbjct: 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 76 ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
E + TV +++ G R G L GD IL ING ++
Sbjct: 34 EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNV 69
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 48 TSEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPADRD 94
T+ V V +H+ G ++ G ++ GG D + K I V +V G PA+
Sbjct: 2 TAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 61
Query: 95 GRLQKGDRILSINGKSMKGLTHKES 119
G LQ GD+I+ +NG M +TH ++
Sbjct: 62 G-LQIGDKIMQVNGWDMTMVTHDQA 85
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
Q TV +I GG + G L GDEIL IN VT S
Sbjct: 36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS 73
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
+GITL E + TV +++ G R G L GD IL ING ++
Sbjct: 26 MGITLKLN---EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNV 69
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G + GG D + + V +V GTPAD RL +GD+++ ING+ + TH + + +K
Sbjct: 32 GFNVKGGYD-QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 35.0 bits (79), Expect = 0.099, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLT-VKKIFTGGCAEKNGQLKAGDEILTINNVPV----- 188
K A LG ++EGG ++ QPL + I GG A GQLK G IL +N + +
Sbjct: 14 KSAATLGIAIEGGANT---RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEH 70
Query: 189 TEMSRIEAWSLLKKLND 205
E +RI A + K D
Sbjct: 71 REAARIIAEAFKTKDRD 87
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+S S ++ ++GI + GG++ + + G A G+L+ G IL +
Sbjct: 1 GSSGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Query: 107 NGKSMKGLTHKESLAIL 123
NG +++G H+E+ I+
Sbjct: 61 NGLTLRGKEHREAARII 77
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 49 SEVSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPADRDG 95
S V V +H+ G ++ G ++ GG D + K I V +V G PA+ G
Sbjct: 22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
Query: 96 RLQKGDRILSINGKSMKGLTHKES 119
LQ GD+I+ +NG M +TH ++
Sbjct: 82 -LQIGDKIMQVNGWDMTMVTHDQA 104
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
I L+K+ LG +++ KD G + V +I GG A+++G + GDE+ +N +PV +
Sbjct: 8 IRLVKNREPLGATIK--KDEQTG--AIIVARIXRGGAADRSGLIHVGDELREVNGIPVED 63
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 74 DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
D ++ I V ++ G ADR G + GD + +NG ++ +E + IL +
Sbjct: 24 DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ 75
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 62 GNSVGITL------AGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT 115
G G TL G +D S V V G PA G L GD I +NG+ + G+
Sbjct: 15 GKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAG-LCAGDLITHVNGEPVHGMV 73
Query: 116 HKESLA-ILKRGPPVEIT 132
H E + ILK G V +T
Sbjct: 74 HPEVVELILKSGNKVAVT 91
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N+V MS +A +
Sbjct: 15 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 200 LKKL 203
L+++
Sbjct: 74 LREI 77
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 VGITLAGGS-DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
+GI++ G S D I + ++ G DGR++ GD +L +N + + +++ +++ +L
Sbjct: 15 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 74
Query: 124 K----RGPPVEITLIK 135
+ + P+ +T+ K
Sbjct: 75 REIVSQTGPISLTVAK 90
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 51 VSVVVLHRDLPGNSV--GITLAGGSDYE-----------SKEITVHKVISGTPADRDGRL 97
V V +H+ G ++ G ++ GG D + K I V +V G PA+ G L
Sbjct: 3 VQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-L 61
Query: 98 QKGDRILSINGKSMKGLTHKES 119
Q GD+I+ +NG M +TH ++
Sbjct: 62 QIGDKIMQVNGWDMTMVTHDQA 83
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N+V MS +A +
Sbjct: 12 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 200 LKKL 203
L+++
Sbjct: 71 LREI 74
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 65 VGITLAGGS-DYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
+GI++ G S D I + ++ G DGR++ GD +L +N + + +++ +++ +L
Sbjct: 12 LGISIVGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVL 71
Query: 124 K----RGPPVEITLIK 135
+ + P+ +T+ K
Sbjct: 72 REIVSQTGPISLTVAK 87
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 85 VISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAG 139
V+ G+PAD G L+ GD+IL++N ++K +H++ + ++ + V +I +G G
Sbjct: 30 VMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGVG 83
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
AG GF+L G P + + G A+ G L+AGD+IL +N + V + S +
Sbjct: 13 AGYGFTLSG-------QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVV 64
Query: 198 SLLKK 202
L+ K
Sbjct: 65 KLIGK 69
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + ++ G DGR++ GD +L +N + + +++ +++
Sbjct: 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVR 76
Query: 122 ILK----RGPPVEITLIK 135
+L+ + P+ +T+ K
Sbjct: 77 VLRDIVHKPGPIVLTVAK 94
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ MS +A +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 200 LKKL 203
L+ +
Sbjct: 78 LRDI 81
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V++ +D N G+T++G + V V A R G +Q GDRI+ +NG +
Sbjct: 11 VIIQKD--DNGFGLTVSG-----DNPVFVQSVKEDGAAMRAG-VQTGDRIIKVNGTLVTH 62
Query: 114 LTHKESLAILKRGPPVEITL 133
H E + ++K G V +T+
Sbjct: 63 SNHLEVVKLIKSGSYVALTV 82
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ + KD G G ++ G D P+ V+ + G A + G ++ GD I+ +N VT
Sbjct: 11 VIIQKDDNGFGLTVSG-------DNPVFVQSVKEDGAAMRAG-VQTGDRIIKVNGTLVTH 62
Query: 191 MSRIEAWSLLK 201
+ +E L+K
Sbjct: 63 SNHLEVVKLIK 73
>pdb|2LA8|A Chain A, Solution Structure Of Inad Pdz5 Complexed With Kon-Tiki
Peptide
Length = 106
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG---PPVEITLIKD 136
T+ +I G + D +LQ+GD I NG +++GL + A+ K +E+T K
Sbjct: 27 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP 86
Query: 137 GAG 139
G+G
Sbjct: 87 GSG 89
>pdb|2QKV|A Chain A, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
pdb|2QKV|B Chain B, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
Length = 96
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
T+ +I G + D +LQ+GD I NG +++GL + S A+ K
Sbjct: 33 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFK 77
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+ G ++IT+ + G GF++ D P+ V+ + +GG AE+ G L+ D +L +
Sbjct: 12 ENGEKLQITIRRGKDGFGFTI-------CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63
Query: 184 NNVPVTEMSRIE 195
N PV +E
Sbjct: 64 NERPVEHWKCVE 75
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 63 NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI 122
N G L G E K + + G+PA+ G L+ D ++++NGKS++ L H + +
Sbjct: 17 NGYGFYLRAGP--EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEM 73
Query: 123 LKRGPPVEITLIKD 136
+++G L+ D
Sbjct: 74 IRKGGDQTTLLVLD 87
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ S +T+ +V +G+ A L GD I +ING+S + +TH E+
Sbjct: 21 GFRLVGGRDF-SAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEA 72
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ S +T+ +V +G+ A L GD I +ING+S + +TH E+
Sbjct: 15 GFRLVGGRDF-SAPLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEA 66
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 97 LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
L+ GD+I+ +NG L HKE++ +LK + I+++
Sbjct: 45 LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 82
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 25/109 (22%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-----------RGPP 128
I V V + +PA G L+ GD++L ING++ G + ++ +LK R P
Sbjct: 29 IFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87
Query: 129 VE--ITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL 174
E IT+ KD G +GF + GK + I A +NG L
Sbjct: 88 FERTITMHKDSTGHVGFIFKNGK----------ITSIVKDSSAARNGLL 126
>pdb|2QKU|A Chain A, The 5th Pdz Domain Of Inad In 10mm Dtt
pdb|2QKU|B Chain B, The 5th Pdz Domain Of Inad In 10mm Dtt
pdb|2QKU|C Chain C, The 5th Pdz Domain Of Inad In 10mm Dtt
Length = 90
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
T+ +I G + D +LQ+GD I NG +++GL + A+ K
Sbjct: 27 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 71
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
I V +V G PA G L GDRI+ +NG+S+ G T+ + +A+++
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQ 106
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESK-EITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V L+R + +G+T+ +D E I + ++ + A +DGR+++GDRI+ ING ++
Sbjct: 23 VDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ 82
Query: 113 GLTHKESLAIL 123
+E++A+L
Sbjct: 83 --NREEAVALL 91
>pdb|2QKT|A Chain A, Crystal Structure Of The 5th Pdz Domain Of Inad
pdb|2QKT|B Chain B, Crystal Structure Of The 5th Pdz Domain Of Inad
Length = 90
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
T+ +I G + D +LQ+GD I NG +++GL + A+ K
Sbjct: 27 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 71
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 97 LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
L+ GD+I+ +NG L HKE++ +LK + I+++
Sbjct: 59 LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIV 96
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 141 GFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
GFSL ++ G + L V + G A K G LKAGDEIL INN
Sbjct: 23 GFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINN 64
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 76 ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---GPPVEIT 132
E+K + V V+ PA GRL+ GDRI +I+G+ + T ++ ++ ++ G V +T
Sbjct: 3 EAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVT 58
Query: 133 LIKD 136
I+D
Sbjct: 59 FIRD 62
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
V +V +PA G L GD I S+NG +++G+ H+E + I+K
Sbjct: 41 VARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
V +V +PA G L GD I S+NG +++G+ H+E + I+K
Sbjct: 41 VCRVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA-ILK 124
G ++GG D+ + I V KV A+ L+ GD I++ING+S + + H E+ + I +
Sbjct: 19 GFRISGGRDFHTP-IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76
Query: 125 RGPPVEITL 133
P+ + L
Sbjct: 77 SASPLRLQL 85
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
VVV+ + N G L G E K + + G+PA+ G L+ D ++++NGKS++
Sbjct: 8 VVVIKKG--SNGYGFYLRAGP--EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVE 62
Query: 113 GLTHKESLAILKRG 126
L H + ++++G
Sbjct: 63 ALDHDGVVEMIRKG 76
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
V +V +PA G L GD I S+NG +++G+ H+E + I+K
Sbjct: 41 VARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK 82
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ S +A +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 200 LKKL 203
L+ +
Sbjct: 74 LRDI 77
>pdb|1WSA|A Chain A, Structure Of L-Asparaginase Ii Precursor
pdb|1WSA|B Chain B, Structure Of L-Asparaginase Ii Precursor
Length = 330
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 64 SVGITLAGG------SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+ G T+AG S Y + +TV K+++ PA D KG++I SI + M G
Sbjct: 10 ATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPAINDLATIKGEQISSIGSQEMTG 65
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
+ I V ++ + A RDG +Q+GD +L ING + ++ ++ +++R
Sbjct: 20 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER 68
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
+ I V ++ + A RDG +Q+GD +L ING + ++ ++ +++R
Sbjct: 19 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER 67
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
+IT+ + G GF++ D P+ V+ + +GG AE+ G L+ D +L +N PV
Sbjct: 6 QITIPRGKDGFGFTI-------CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVE 57
Query: 190 EMSRIE 195
+E
Sbjct: 58 HWKCVE 63
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
T+ +I G + D +LQ+GD I NG +++GL + A+ K
Sbjct: 138 CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 272 DLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDL-----NALGYDLNALGHP 326
++ AL + + L GH Q H Q A++ L LG L+A GH
Sbjct: 78 EVEALAIERVKRLFNAGHANVQP-----HSGAQANGAVMLALAKPGDTVLGMSLDAGGHL 132
Query: 327 KTQDLNALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDL 383
AL K NAL+Y S+D + Y + + L P YP+ D
Sbjct: 133 THGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDF 189
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
VK++ G A K+G L GD IL IN MS +A L++K
Sbjct: 25 VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEK 68
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
VK++ G A K+G L GD IL IN MS +A L++K
Sbjct: 25 VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEK 68
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
+ +V G+PA+ L+ GDR++ +NG +++G TH + + +K
Sbjct: 29 IRRVEPGSPAEA-AALRAGDRLVEVNGVNVEGETHHQVVQRIK 70
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 141 GFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
GFSL ++ G + L V + G A K G LKAGDEIL INN
Sbjct: 32 GFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
VVV+ + N G L G E K + + G+PA+ G L+ D ++++NGKS++
Sbjct: 5 VVVIKKG--SNGYGFYLRAGP--EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVE 59
Query: 113 GLTHKESLAILKRG 126
L H + ++++G
Sbjct: 60 ALDHDGVVEMIRKG 73
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+S V+ ++HR +G + G + ++ G A+R G ++ G RI+ I
Sbjct: 4 GSSGVTTAIIHRPHAREQLGFCVEDG--------IICSLLRGGIAERGG-IRVGHRIIEI 54
Query: 107 NGKSMKGLTHKESLAIL 123
NG+S+ H + +L
Sbjct: 55 NGQSVVATPHARIIELL 71
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 25/109 (22%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-----------RGPP 128
I V V + +PA G L+ GD++L ING++ G + ++ +LK R P
Sbjct: 29 IFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITXTIRDRP 87
Query: 129 VE--ITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQL 174
E IT KD G +GF + GK + I A +NG L
Sbjct: 88 FERTITXHKDSTGHVGFIFKNGK----------ITSIVKDSSAARNGLL 126
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
+ +HKVI G+PA R G L+ GD IL+I G+ M
Sbjct: 37 VLIHKVILGSPAHRAG-LRPGDVILAI-GEQM 66
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ S +A +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 200 LKKL 203
L+ +
Sbjct: 74 LRDI 77
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+ + +++ ++ G A + G + GD +LSI+G++ LTH E+
Sbjct: 16 GFRLQGGKDF-NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEA 67
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
+ +HKVI G+PA R G L+ GD IL+I G+ M
Sbjct: 258 VLIHKVILGSPAHRAG-LRPGDVILAI-GEQM 287
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 84 KVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
K I +P R L++GD I+ +N K+++ LTH + + +L P E+TL+
Sbjct: 32 KQIVDSPRSRG--LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL 81
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203
V +I GG + G L GDEI IN + V + + +L+++
Sbjct: 29 VARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
I+DG + + G + P + + ++ GG AE G L DE++ +N + V
Sbjct: 49 IRDGTSVRVTASGLEKQP----GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEV 99
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
I V ++ + A RDG +Q+GD +L ING + ++ ++ +++R
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS 71
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 56 LHRDLPGNSVG----ITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
L R G+ G IT GGS K++ V G PA++ G + GD I++++G ++
Sbjct: 76 LRRGTAGSVTGVGLEITYDGGS---GKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAV 131
Query: 112 KGLT 115
KGL+
Sbjct: 132 KGLS 135
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk P55
Subfamily Member 2
Length = 91
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
G+ F +EGG+ L + +I GG + G L GD I +N PV
Sbjct: 21 GVTFRVEGGE--------LVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG S+ G + + GD + + I GG +G+++ GD +L +N++ S +A +
Sbjct: 13 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 200 LKKL 203
L+ +
Sbjct: 72 LRDI 75
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 63 NSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLA 121
N +GI++ G S+ I + + G DGR++ GD +L +N + + ++ +++
Sbjct: 11 NFLGISIVGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVR 70
Query: 122 ILK----RGPPVEITLIK 135
+L+ + P+ +T+ K
Sbjct: 71 VLRDIVHKPGPIVLTVAK 88
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 115 THKESLAILKRGPPVEITL-IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQ 173
TH+ + +LK G + I+DG + + G + P + + ++ GG AE G
Sbjct: 30 THRR-VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQP----GIFISRLVPGGLAESTGL 84
Query: 174 LKAGDEILTINNVPV 188
L DE++ +N + V
Sbjct: 85 LAVNDEVIEVNGIEV 99
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 115 THKESLAILKRGPPVEITL-IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQ 173
TH+ + +LK G + I+DG + + G + P + + ++ GG AE G
Sbjct: 2 THRR-VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQP----GIFISRLVPGGLAESTGL 56
Query: 174 LKAGDEILTINNVPV 188
L DE++ +N + V
Sbjct: 57 LAVNDEVIEVNGIEV 71
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 115 THKESLAILKRGPPVEITL-IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQ 173
TH+ + +LK G + I+DG + + G + P + + ++ GG AE G
Sbjct: 4 THRR-VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQP----GIFISRLVPGGLAESTGL 58
Query: 174 LKAGDEILTINNVPV 188
L DE++ +N + V
Sbjct: 59 LAVNDEVIEVNGIEV 73
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG L ++ P+ L + + G A +G L+ GD ++++ + V + E L
Sbjct: 38 LGLGLVVIQNGPY----LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKL 93
Query: 200 LKKLNDGTIQDIKA 213
L+ + GT+ IKA
Sbjct: 94 LQNITIGTVLQIKA 107
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G+PA++ G L GDR++ +NG++++ TH++ ++ ++
Sbjct: 37 GSPAEKAGLL-AGDRLVEVNGENVEKETHQQVVSRIR 72
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG 126
+ V +PA+ G L+ DRI+ +NG M+G H + ++ ++ G
Sbjct: 37 IRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
I+DG+ + + G + P + + ++ GG A+ G L DE+L +N + V+ S
Sbjct: 48 IRDGSSVRVTPHGLEKVP----GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKS 102
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G+PA++ G L GDR++ +NG++++ TH++ ++ ++
Sbjct: 37 GSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIR 72
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G+PA++ G L GDR++ +NG++++ TH++ ++ ++
Sbjct: 36 GSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIR 71
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G+PA++ G L GDR++ +NG++++ TH++ ++ ++
Sbjct: 37 GSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIR 72
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
G+PA++ G L GDR+L ING + H + + ++++ L+ DG
Sbjct: 37 GSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 85
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119
G L GG D+E + + + +V G+ A L GD I +I+G++ +TH E+
Sbjct: 16 GFRLVGGKDFE-QPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEA 67
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123
+GI++ G E I V KV G+ A + G L+ GD++L NG +++ T +++ I+
Sbjct: 32 LGISIVSG---EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLII 86
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 84 KVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
K+ +PA G LQ GD + +ING S +G T+K+ + +++
Sbjct: 54 KIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR 93
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+ + G+PA++ G L GDR+L ING + H + + ++++ L+ DG
Sbjct: 30 IRVIEEGSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 84
>pdb|2I3A|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3A|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis
pdb|2I3G|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+.
pdb|2I3G|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis In
Complex With Nadp+
Length = 352
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 63 NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
N+ + +AG S Y EI +++ G PA DGRL+ G + + S G H
Sbjct: 8 NATKVAVAGASGYAGGEIL--RLLLGHPAYADGRLRIGALTAATSAGSTLGEHH 59
>pdb|2NQT|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
pdb|2NQT|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Rv1652) From Mycobacterium Tuberculosis At
1.58 A Resolution
Length = 352
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 63 NSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
N+ + +AG S Y EI +++ G PA DGRL+ G + + S G H
Sbjct: 8 NATKVAVAGASGYAGGEIL--RLLLGHPAYADGRLRIGALTAATSAGSTLGEHH 59
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 60 LPGNSV-GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE 118
LPG + G L+GG D+ ++ + + ++ G+ A L GD IL+I+G + +TH +
Sbjct: 11 LPGPAPWGFRLSGGIDF-NQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHAD 68
Query: 119 S 119
+
Sbjct: 69 A 69
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
G+PA++ G L GDR+L ING + H + + ++++ L+ DG
Sbjct: 48 GSPAEKAGLLD-GDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG 96
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 184 NNVPVTEMSRIEAWSLLKKLNDGTIQ 209
N PV E R+E +SLL LN+G +Q
Sbjct: 27 NGNPVAENFRVEEFSLLDALNEGQVQ 52
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP-PVEITLIKD 136
I V +V PA + LQ GD+I+ NG S + H +++++LK VE+ ++++
Sbjct: 26 IFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 81
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
I V +V PA + LQ GD+I+ NG S + H +++++LK
Sbjct: 27 IFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,673,560
Number of Sequences: 62578
Number of extensions: 818949
Number of successful extensions: 2089
Number of sequences better than 100.0: 298
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1470
Number of HSP's gapped (non-prelim): 554
length of query: 548
length of database: 14,973,337
effective HSP length: 104
effective length of query: 444
effective length of database: 8,465,225
effective search space: 3758559900
effective search space used: 3758559900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)