Query psy6405
Match_columns 548
No_of_seqs 299 out of 2677
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:03:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.8 2.3E-18 4.9E-23 188.6 15.3 160 49-215 752-982 (984)
2 KOG3209|consensus 99.7 1.6E-16 3.5E-21 174.3 15.4 160 50-217 649-839 (984)
3 PRK10779 zinc metallopeptidase 99.5 2.3E-13 4.9E-18 147.2 15.1 136 79-218 127-281 (449)
4 TIGR02037 degP_htrA_DO peripla 99.5 4.3E-13 9.4E-18 143.7 16.5 136 78-217 257-422 (428)
5 PRK10139 serine endoprotease; 99.5 6.1E-13 1.3E-17 144.3 16.6 135 78-217 290-448 (455)
6 KOG3580|consensus 99.5 2.4E-13 5.1E-18 147.6 12.6 165 49-217 7-280 (1027)
7 TIGR00054 RIP metalloprotease 99.5 5.8E-13 1.3E-17 143.0 14.9 136 78-218 128-263 (420)
8 PRK10942 serine endoprotease; 99.5 2E-12 4.4E-17 140.9 18.2 135 78-217 311-466 (473)
9 KOG3605|consensus 99.3 4.2E-12 9.1E-17 139.2 9.4 148 44-203 639-803 (829)
10 COG0793 Prc Periplasmic protea 99.2 4.6E-11 1E-15 128.2 8.9 188 12-223 43-245 (406)
11 PF00595 PDZ: PDZ domain (Also 99.2 1.5E-10 3.3E-15 96.0 8.9 79 53-133 1-80 (81)
12 PF13180 PDZ_2: PDZ domain; PD 99.0 9.2E-10 2E-14 91.9 8.8 79 64-145 2-81 (82)
13 PF00595 PDZ: PDZ domain (Also 99.0 1.3E-09 2.8E-14 90.4 9.5 80 130-213 1-81 (81)
14 KOG3580|consensus 99.0 1.6E-09 3.4E-14 118.4 10.0 151 52-215 200-489 (1027)
15 PLN00049 carboxyl-terminal pro 98.9 3.5E-09 7.6E-14 113.0 9.3 175 35-222 47-235 (389)
16 cd00988 PDZ_CTP_protease PDZ d 98.9 2.3E-08 5.1E-13 82.9 10.4 80 62-146 1-83 (85)
17 cd00992 PDZ_signaling PDZ doma 98.7 9.5E-08 2.1E-12 78.3 10.4 79 52-133 2-81 (82)
18 TIGR00225 prc C-terminal pepti 98.7 3.4E-08 7.5E-13 103.0 9.7 141 62-222 50-192 (334)
19 smart00228 PDZ Domain present 98.7 1.5E-07 3.3E-12 76.9 11.6 81 52-136 3-84 (85)
20 cd00136 PDZ PDZ domain, also c 98.7 1.3E-07 2.9E-12 75.6 8.6 66 64-133 2-69 (70)
21 cd00990 PDZ_glycyl_aminopeptid 98.6 1.9E-07 4.2E-12 76.7 9.4 76 64-146 2-77 (80)
22 KOG3550|consensus 98.6 1.1E-07 2.4E-12 89.5 8.6 85 126-214 89-173 (207)
23 KOG3550|consensus 98.6 1.3E-07 2.7E-12 89.1 8.5 85 47-134 87-172 (207)
24 cd00989 PDZ_metalloprotease PD 98.6 2.7E-07 5.8E-12 75.4 9.5 66 78-144 12-77 (79)
25 cd00991 PDZ_archaeal_metallopr 98.6 2.3E-07 5E-12 77.3 8.3 67 78-145 10-77 (79)
26 cd00136 PDZ PDZ domain, also c 98.5 8E-07 1.7E-11 71.1 9.5 68 139-212 2-69 (70)
27 cd00992 PDZ_signaling PDZ doma 98.5 2.4E-06 5.1E-11 70.0 11.3 78 130-212 3-81 (82)
28 KOG3571|consensus 98.4 6.1E-07 1.3E-11 97.2 8.7 88 48-136 247-339 (626)
29 PRK11186 carboxy-terminal prot 98.4 3.3E-07 7.2E-12 104.0 7.0 166 37-223 209-395 (667)
30 smart00228 PDZ Domain present 98.4 6.9E-06 1.5E-10 67.1 12.0 82 129-215 3-84 (85)
31 cd00986 PDZ_LON_protease PDZ d 98.4 1.6E-06 3.5E-11 71.7 8.1 68 78-147 8-76 (79)
32 cd00987 PDZ_serine_protease PD 98.3 1.6E-06 3.5E-11 72.2 7.7 63 78-141 24-87 (90)
33 KOG3549|consensus 98.3 6E-07 1.3E-11 93.8 4.9 110 97-215 29-139 (505)
34 KOG3551|consensus 98.3 1.1E-06 2.4E-11 92.8 6.6 86 128-217 85-171 (506)
35 PF13180 PDZ_2: PDZ domain; PD 98.3 2.3E-06 5E-11 71.4 6.9 72 140-218 3-75 (82)
36 KOG3549|consensus 98.2 1.8E-06 4E-11 90.2 7.1 84 49-134 53-137 (505)
37 KOG3553|consensus 98.2 4.9E-07 1.1E-11 79.9 2.4 71 64-135 36-115 (124)
38 cd00988 PDZ_CTP_protease PDZ d 98.2 4.2E-06 9.2E-11 69.4 7.6 70 139-215 3-72 (85)
39 TIGR01713 typeII_sec_gspC gene 98.1 9.8E-06 2.1E-10 82.7 9.6 80 64-145 178-258 (259)
40 KOG3551|consensus 98.1 3.4E-06 7.4E-11 89.2 6.1 81 52-134 86-167 (506)
41 KOG1892|consensus 98.1 7.9E-06 1.7E-10 93.7 8.7 88 48-138 931-1021(1629)
42 COG0793 Prc Periplasmic protea 98.0 1.4E-05 3.1E-10 86.2 8.4 75 136-216 98-172 (406)
43 KOG3553|consensus 98.0 1.1E-05 2.4E-10 71.5 5.8 72 140-214 37-115 (124)
44 KOG3651|consensus 98.0 2.5E-05 5.3E-10 80.8 8.9 82 52-135 6-88 (429)
45 TIGR00054 RIP metalloprotease 98.0 2.1E-05 4.5E-10 85.1 8.6 69 78-147 203-271 (420)
46 KOG3571|consensus 98.0 3.4E-05 7.4E-10 84.1 9.7 90 129-219 251-343 (626)
47 PRK10779 zinc metallopeptidase 97.9 2.7E-05 5.9E-10 84.8 8.6 68 79-147 222-289 (449)
48 TIGR02038 protease_degS peripl 97.9 3.2E-05 6.9E-10 81.8 8.4 69 78-147 278-347 (351)
49 PRK10898 serine endoprotease; 97.9 3.7E-05 8E-10 81.5 8.8 69 78-147 279-348 (353)
50 cd00991 PDZ_archaeal_metallopr 97.9 3.5E-05 7.6E-10 64.2 6.9 59 155-216 10-69 (79)
51 cd00989 PDZ_metalloprotease PD 97.9 5.9E-05 1.3E-09 61.5 8.0 58 156-216 13-70 (79)
52 PLN00049 carboxyl-terminal pro 97.9 5.4E-05 1.2E-09 81.2 9.6 61 156-217 103-163 (389)
53 TIGR03279 cyano_FeS_chp putati 97.8 0.00011 2.3E-09 79.9 11.2 116 82-203 2-138 (433)
54 COG3975 Predicted protease wit 97.8 6.6E-05 1.4E-09 82.6 8.9 121 17-150 397-526 (558)
55 TIGR00225 prc C-terminal pepti 97.8 6.3E-05 1.4E-09 78.7 7.7 73 139-218 52-124 (334)
56 KOG1892|consensus 97.7 7.5E-05 1.6E-09 86.0 8.1 86 128-215 934-1019(1629)
57 TIGR02037 degP_htrA_DO peripla 97.7 9E-05 1.9E-09 80.0 7.9 64 78-142 362-426 (428)
58 cd00987 PDZ_serine_protease PD 97.7 0.00014 3E-09 60.5 6.8 58 156-216 25-83 (90)
59 cd00990 PDZ_glycyl_aminopeptid 97.6 0.00025 5.5E-09 58.1 8.2 55 156-216 13-68 (80)
60 PRK10139 serine endoprotease; 97.6 0.00016 3.4E-09 79.3 8.4 65 78-144 390-454 (455)
61 KOG1421|consensus 97.6 0.00032 6.9E-09 79.0 10.8 121 78-205 303-449 (955)
62 cd00986 PDZ_LON_protease PDZ d 97.6 0.0002 4.3E-09 59.1 6.8 58 156-217 9-67 (79)
63 KOG3552|consensus 97.6 7.7E-05 1.7E-09 85.8 5.0 77 50-136 55-132 (1298)
64 TIGR02860 spore_IV_B stage IV 97.5 0.00036 7.9E-09 75.3 9.6 78 62-146 95-180 (402)
65 PRK10942 serine endoprotease; 97.5 0.00025 5.5E-09 78.0 8.3 64 78-143 408-471 (473)
66 KOG3651|consensus 97.5 0.00044 9.6E-09 71.7 9.2 79 130-212 7-86 (429)
67 PRK11186 carboxy-terminal prot 97.4 0.00038 8.3E-09 79.6 7.8 70 139-215 245-320 (667)
68 PF04495 GRASP55_65: GRASP55/6 97.3 0.003 6.5E-08 59.1 12.0 99 48-147 8-114 (138)
69 KOG3129|consensus 97.3 0.00054 1.2E-08 68.0 7.3 69 79-148 140-211 (231)
70 KOG3606|consensus 97.3 0.00063 1.4E-08 69.7 7.4 83 52-134 160-251 (358)
71 KOG3542|consensus 97.2 0.00054 1.2E-08 77.0 6.8 84 49-134 534-617 (1283)
72 KOG0609|consensus 97.1 0.0031 6.6E-08 69.8 10.3 81 50-134 122-203 (542)
73 PRK09681 putative type II secr 97.0 0.0026 5.6E-08 65.8 8.8 62 83-145 209-274 (276)
74 COG0265 DegQ Trypsin-like seri 97.0 0.002 4.4E-08 67.5 8.1 70 78-148 270-340 (347)
75 KOG4371|consensus 97.0 0.0027 5.8E-08 74.4 9.4 154 49-214 1146-1328(1332)
76 KOG1421|consensus 97.0 0.0059 1.3E-07 69.2 11.6 122 79-214 772-917 (955)
77 PF14685 Tricorn_PDZ: Tricorn 97.0 0.0038 8.2E-08 54.3 8.0 70 64-138 2-81 (88)
78 TIGR01713 typeII_sec_gspC gene 96.9 0.0016 3.5E-08 66.6 6.6 61 155-218 191-252 (259)
79 KOG3938|consensus 96.8 0.0035 7.6E-08 64.3 7.9 112 89-206 81-200 (334)
80 TIGR02038 protease_degS peripl 96.8 0.0018 3.9E-08 68.6 5.7 60 155-217 278-338 (351)
81 PRK10898 serine endoprotease; 96.7 0.0023 5E-08 67.9 6.0 60 155-217 279-339 (353)
82 KOG3606|consensus 96.7 0.008 1.7E-07 61.9 8.9 58 155-213 194-251 (358)
83 KOG3552|consensus 96.7 0.0029 6.2E-08 73.4 6.3 77 128-215 56-132 (1298)
84 KOG3542|consensus 96.6 0.0028 6E-08 71.5 5.4 82 127-214 535-618 (1283)
85 TIGR02860 spore_IV_B stage IV 96.5 0.0092 2E-07 64.7 8.8 75 132-217 90-172 (402)
86 PF04495 GRASP55_65: GRASP55/6 96.5 0.012 2.6E-07 55.1 8.2 74 138-214 26-100 (138)
87 KOG3834|consensus 96.5 0.017 3.6E-07 62.7 10.1 137 78-220 15-171 (462)
88 KOG0609|consensus 96.4 0.009 2E-07 66.2 8.2 78 130-213 125-203 (542)
89 KOG3605|consensus 96.3 0.0065 1.4E-07 68.5 6.3 84 129-214 647-733 (829)
90 KOG3938|consensus 96.2 0.0087 1.9E-07 61.4 6.0 86 49-139 125-213 (334)
91 KOG4407|consensus 96.1 0.0061 1.3E-07 72.8 5.1 122 52-205 47-192 (1973)
92 KOG1320|consensus 95.7 0.028 6E-07 62.1 7.5 131 79-215 288-456 (473)
93 TIGR03279 cyano_FeS_chp putati 95.2 0.025 5.5E-07 61.9 5.1 185 159-369 2-225 (433)
94 KOG3129|consensus 95.1 0.043 9.3E-07 54.8 6.0 61 157-218 141-202 (231)
95 COG3480 SdrC Predicted secrete 94.7 0.12 2.6E-06 54.5 8.3 55 79-135 131-186 (342)
96 KOG0606|consensus 94.5 0.071 1.5E-06 63.7 6.7 79 53-134 629-714 (1205)
97 COG3031 PulC Type II secretory 94.5 0.19 4.1E-06 51.3 8.8 59 86-145 215-274 (275)
98 KOG0606|consensus 94.1 0.084 1.8E-06 63.0 6.2 78 130-210 629-711 (1205)
99 PF14685 Tricorn_PDZ: Tricorn 93.9 0.18 4E-06 43.9 6.6 58 157-216 14-80 (88)
100 KOG1738|consensus 93.6 0.11 2.3E-06 58.9 5.6 72 61-135 211-283 (638)
101 KOG1320|consensus 93.5 0.2 4.4E-06 55.5 7.7 67 79-146 399-466 (473)
102 PRK09681 putative type II secr 93.2 0.27 6E-06 51.1 7.5 51 166-219 218-269 (276)
103 KOG3532|consensus 93.1 0.25 5.4E-06 56.6 7.5 58 61-122 384-441 (1051)
104 COG0265 DegQ Trypsin-like seri 92.4 0.2 4.4E-06 52.6 5.5 61 156-219 271-332 (347)
105 KOG1738|consensus 91.7 0.29 6.3E-06 55.6 5.9 77 136-217 211-287 (638)
106 KOG3532|consensus 91.4 0.52 1.1E-05 54.1 7.4 107 155-273 398-505 (1051)
107 COG3975 Predicted protease wit 89.9 0.39 8.4E-06 53.8 4.7 56 156-221 463-518 (558)
108 PF12812 PDZ_1: PDZ-like domai 89.7 1.8 4E-05 36.7 7.7 74 100-205 4-77 (78)
109 COG0750 Predicted membrane-ass 89.3 1.2 2.6E-05 46.8 7.8 54 81-135 132-188 (375)
110 COG3031 PulC Type II secretory 87.5 1.5 3.3E-05 45.0 6.7 69 133-219 200-269 (275)
111 COG3480 SdrC Predicted secrete 85.5 1.5 3.2E-05 46.6 5.6 56 156-215 131-187 (342)
112 PF11874 DUF3394: Domain of un 80.6 5.6 0.00012 39.3 7.1 85 17-106 58-149 (183)
113 PF12812 PDZ_1: PDZ-like domai 77.1 5.2 0.00011 34.0 5.0 40 79-119 31-70 (78)
114 COG0750 Predicted membrane-ass 73.2 8.2 0.00018 40.7 6.5 53 159-214 133-188 (375)
115 KOG4371|consensus 67.2 5.9 0.00013 47.9 4.1 81 53-136 1248-1329(1332)
116 KOG3834|consensus 60.5 38 0.00083 37.6 8.5 85 47-134 74-165 (462)
117 PF11874 DUF3394: Domain of un 50.6 38 0.00082 33.5 5.9 28 156-184 123-150 (183)
118 KOG4407|consensus 32.0 25 0.00053 43.9 1.7 45 79-124 144-188 (1973)
119 KOG2921|consensus 28.5 55 0.0012 36.2 3.4 38 78-116 220-258 (484)
120 KOG2921|consensus 27.2 75 0.0016 35.2 4.1 46 156-203 221-266 (484)
No 1
>KOG3209|consensus
Probab=99.78 E-value=2.3e-18 Score=188.64 Aligned_cols=160 Identities=31% Similarity=0.542 Sum_probs=135.1
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh----
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---- 124 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---- 124 (548)
..++.|+|+|. +++||||.|......+..+ |..|.+||||+++|+|++||+|++|||.+|.+++|.+.+..++
T Consensus 752 ~~~yDV~lhR~-ENeGFGFVi~sS~~kp~sg--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGl 828 (984)
T KOG3209|consen 752 SGPYDVVLHRK-ENEGFGFVIMSSQNKPESG--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGL 828 (984)
T ss_pred CCCeeeEEecc-cCCceeEEEEecccCCCCC--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCc
Confidence 44789999998 5999999998766544333 9999999999999999999999999999999999999762211
Q ss_pred -------------------------------------------------------------------CCCCeEEEEEecC
Q psy6405 125 -------------------------------------------------------------------RGPPVEITLIKDG 137 (548)
Q Consensus 125 -------------------------------------------------------------------~g~~VtVtV~RdG 137 (548)
.+.-++|++.|..
T Consensus 829 sVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~ 908 (984)
T KOG3209|consen 829 SVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGA 908 (984)
T ss_pred eEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccc
Confidence 1223788889999
Q ss_pred cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG 215 (548)
Q Consensus 138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri 215 (548)
+++||+|.++++. .++++|-.+.+.+||.+.||+++||+|++|||.++.+++|..+.++|++- +..+.++..|+
T Consensus 909 kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~g-g~~vll~Lr~g 982 (984)
T KOG3209|consen 909 KGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQG-GRRVLLLLRRG 982 (984)
T ss_pred cccceEeeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhC-CeEEEEEeccC
Confidence 9999999999654 35799999999999999999999999999999999999999999999985 55555555443
No 2
>KOG3209|consensus
Probab=99.70 E-value=1.6e-16 Score=174.29 Aligned_cols=160 Identities=26% Similarity=0.495 Sum_probs=130.6
Q ss_pred CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh---CC
Q psy6405 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RG 126 (548)
Q Consensus 50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk---~g 126 (548)
+...|.|.|. -.||||.|.||.+ ...+++|..|++.++|++.|||+.||+|+.|+|.+|.+.+|.+++..+. ..
T Consensus 649 k~ldV~L~rk--esGFGFRiLGG~e-p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArn 725 (984)
T KOG3209|consen 649 KELDVFLRRK--ESGFGFRILGGDE-PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARN 725 (984)
T ss_pred cceeEEEEee--ccccceEEecCCC-CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhc
Confidence 5567888887 5899999999975 3578999999999999999999999999999999999999999874432 23
Q ss_pred CCeEEEEEe----------------------------cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCC
Q psy6405 127 PPVEITLIK----------------------------DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178 (548)
Q Consensus 127 ~~VtVtV~R----------------------------dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GD 178 (548)
.-|.++|+| +.+++||.|..+...+ +.-|..|.++|||+++|+|++||
T Consensus 726 ghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp----~sgiGrIieGSPAdRCgkLkVGD 801 (984)
T KOG3209|consen 726 GHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKP----ESGIGRIIEGSPADRCGKLKVGD 801 (984)
T ss_pred CceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCC----CCCccccccCChhHhhccccccc
Confidence 334444443 2356788876655443 23388999999999999999999
Q ss_pred EEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405 179 EILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD 217 (548)
Q Consensus 179 rILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD 217 (548)
+|++|||++|.+++|.+.+.+|+.+ +-.|++++.-.-.
T Consensus 802 rilAVNG~sI~~lsHadiv~LIKda-GlsVtLtIip~ee 839 (984)
T KOG3209|consen 802 RILAVNGQSILNLSHADIVSLIKDA-GLSVTLTIIPPEE 839 (984)
T ss_pred eEEEecCeeeeccCchhHHHHHHhc-CceEEEEEcChhc
Confidence 9999999999999999999999998 7778877755433
No 3
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.50 E-value=2.3e-13 Score=147.15 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=109.4
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCCC-------
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKDS------- 150 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s------- 150 (548)
...|..|.++|||++|| |++||+|++|||+++.++++.. .+.....++.+.+++.|+++....+++.....
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~ 205 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDK 205 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccc
Confidence 45789999999999999 9999999999999999998776 34455567789999999988766555432110
Q ss_pred -----CCCC------CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405 151 -----PFGD------QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL 218 (548)
Q Consensus 151 -----~lG~------~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL 218 (548)
.+|. .++.|..|.++|||+++| |++||+|++|||+++.++. ++.+.++...+..+.+.+.|....
T Consensus 206 ~~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 206 QDPVSSLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQ--TFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred cchhhcccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCEEEEEEEECCEE
Confidence 0110 136899999999999999 9999999999999998776 777888876677889999887654
No 4
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.49 E-value=4.3e-13 Score=143.75 Aligned_cols=136 Identities=28% Similarity=0.511 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCCC------
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKDS------ 150 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s------ 150 (548)
.+++|..|.++|||+++| |++||+|++|||.++.++.+.. .+.....+..+.++|.|+++...++++.....
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~ 335 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASS 335 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccc
Confidence 579999999999999999 9999999999999999987665 44455678889999999888777666532100
Q ss_pred ---CC---------------C----CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCc
Q psy6405 151 ---PF---------------G----DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGT 207 (548)
Q Consensus 151 ---~l---------------G----~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~ 207 (548)
.+ + ..+++|..|.++|+|+++| |++||+|++|||+++.++. ++.++++.. .+..
T Consensus 336 ~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~--d~~~~l~~~~~g~~ 412 (428)
T TIGR02037 336 SNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVA--ELRKVLDRAKKGGR 412 (428)
T ss_pred cccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCE
Confidence 00 0 1478999999999999999 9999999999999998765 788888875 4678
Q ss_pred eeEEEEeccc
Q psy6405 208 IQDIKALGYD 217 (548)
Q Consensus 208 V~LlV~RilD 217 (548)
+.+.+.|...
T Consensus 413 v~l~v~R~g~ 422 (428)
T TIGR02037 413 VALLILRGGA 422 (428)
T ss_pred EEEEEEECCE
Confidence 8888888654
No 5
>PRK10139 serine endoprotease; Provisional
Probab=99.48 E-value=6.1e-13 Score=144.31 Aligned_cols=135 Identities=22% Similarity=0.385 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeEEEecCCCCC-----
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGFSLEGGKDSP----- 151 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~----- 151 (548)
.+++|..|.++|||+++| |++||+|++|||+++.+|..... +.....+..+.++|.|+++.+.++++......
T Consensus 290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~ 368 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASA 368 (455)
T ss_pred CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccccc
Confidence 589999999999999999 99999999999999999987764 44446788899999999988777775432110
Q ss_pred -------CC-----------CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE
Q psy6405 152 -------FG-----------DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA 213 (548)
Q Consensus 152 -------lG-----------~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~ 213 (548)
.| ..+++|..|.++|||+++| |++||+|++|||.++.++. ++.+.+++.+ ..+.+.+.
T Consensus 369 ~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~--~~~~~l~~~~-~~v~l~v~ 444 (455)
T PRK10139 369 EMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIA--EMRKVLAAKP-AIIALQIV 444 (455)
T ss_pred ccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhCC-CeEEEEEE
Confidence 01 1368899999999999999 9999999999999999877 7888888754 67888888
Q ss_pred eccc
Q psy6405 214 LGYD 217 (548)
Q Consensus 214 RilD 217 (548)
|...
T Consensus 445 R~g~ 448 (455)
T PRK10139 445 RGNE 448 (455)
T ss_pred ECCE
Confidence 8654
No 6
>KOG3580|consensus
Probab=99.47 E-value=2.4e-13 Score=147.55 Aligned_cols=165 Identities=34% Similarity=0.548 Sum_probs=129.3
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCC-----CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESK-----EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~-----gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l 123 (548)
++.+++.|.|+ +..||||.|+||.+.+.. .++|+.|.|||||+ |+|+.||+|+.|||+++.+..|.-+++.+
T Consensus 7 WEQhTvTL~kd-p~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqL 83 (1027)
T KOG3580|consen 7 WEQHTVTLQKD-PKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQL 83 (1027)
T ss_pred hhhheeeeecC-CCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHH
Confidence 56789999998 589999999999987643 78999999999995 88999999999999999999999988777
Q ss_pred h-CCCCeEEEEEecCc--------------------------ceeEEE----------ecCCC-----------------
Q psy6405 124 K-RGPPVEITLIKDGA--------------------------GLGFSL----------EGGKD----------------- 149 (548)
Q Consensus 124 k-~g~~VtVtV~RdGk--------------------------gLGfSI----------tgg~~----------------- 149 (548)
+ +++...|+|.|..+ +..+.. .++..
T Consensus 84 rksgK~A~ItvkRprkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~r 163 (1027)
T KOG3580|consen 84 RKSGKVAAITVKRPRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERAR 163 (1027)
T ss_pred HhhccceeEEecccceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccccc
Confidence 6 45556677765321 000000 00000
Q ss_pred --------------------------C--C-------------------CCC---CCeEEEEeccCChhhhcCCCCCCCE
Q psy6405 150 --------------------------S--P-------------------FGD---QPLTVKKIFTGGCAEKNGQLKAGDE 179 (548)
Q Consensus 150 --------------------------s--~-------------------lG~---~gI~VssV~pgSpAekaGrLq~GDr 179 (548)
. + .|. +.|+|+.|...|.|++.|.|+.||.
T Consensus 164 srer~ls~~~~gprs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrLgSqIFvKeit~~gLAardgnlqEGDi 243 (1027)
T KOG3580|consen 164 SRERDLSRDRRGPRSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRLGSQIFVKEITRTGLAARDGNLQEGDI 243 (1027)
T ss_pred ccccccccCCCCCcccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccccchhhhhhhcccchhhccCCcccccE
Confidence 0 0 000 2578888999999999999999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405 180 ILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD 217 (548)
Q Consensus 180 ILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD 217 (548)
|++|||+...+++..++..+|.+. .+++.++|.|...
T Consensus 244 iLkINGtvteNmSLtDar~LIEkS-~GKL~lvVlRD~~ 280 (1027)
T KOG3580|consen 244 ILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDSQ 280 (1027)
T ss_pred EEEECcEeeccccchhHHHHHHhc-cCceEEEEEecCC
Confidence 999999999999999999999887 5688999988644
No 7
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.47 E-value=5.8e-13 Score=143.02 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=109.3
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCe
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPL 157 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI 157 (548)
.++.|..|.++|||+++| |++||+|++|||.++.++.+......... .++.+++.|+++...+.++.+........++
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~ 205 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIA-GEPMVEILAERENWTFEVMKELIPRGPKIEP 205 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhc-ccceEEEEEecCceEecccccceecCCCcCc
Confidence 467899999999999999 99999999999999999987775444444 6788999998777655443321111011258
Q ss_pred EEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405 158 TVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL 218 (548)
Q Consensus 158 ~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL 218 (548)
.|..|.++|||+++| |++||+|++|||+++.++. ++.+.++..++.++.+.+.|....
T Consensus 206 vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 206 VLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWT--DFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCceEEEEEECCEE
Confidence 899999999999999 9999999999999999876 888888887677889999887643
No 8
>PRK10942 serine endoprotease; Provisional
Probab=99.45 E-value=2e-12 Score=140.90 Aligned_cols=135 Identities=24% Similarity=0.380 Sum_probs=110.8
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCCC------C
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGKD------S 150 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~------s 150 (548)
.+++|..|.++|||+++| |++||+|++|||++|.++.... .+.....+..+.++|.|+++...+.++.... .
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~ 389 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDS 389 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccc
Confidence 589999999999999999 9999999999999999998765 4445567888999999998877666653221 0
Q ss_pred ---CCCC-----------CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405 151 ---PFGD-----------QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY 216 (548)
Q Consensus 151 ---~lG~-----------~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril 216 (548)
.+|. .++.|.+|.++|+|+++| |++||+|++||++++.++. ++.++++.. ...+.+++.|..
T Consensus 390 ~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~--dl~~~l~~~-~~~v~l~V~R~g 465 (473)
T PRK10942 390 SNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIA--ELRKILDSK-PSVLALNIQRGD 465 (473)
T ss_pred ccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhC-CCeEEEEEEECC
Confidence 0111 368899999999999999 9999999999999999876 888888875 467888888865
Q ss_pred c
Q psy6405 217 D 217 (548)
Q Consensus 217 D 217 (548)
.
T Consensus 466 ~ 466 (473)
T PRK10942 466 S 466 (473)
T ss_pred E
Confidence 4
No 9
>KOG3605|consensus
Probab=99.31 E-value=4.2e-12 Score=139.22 Aligned_cols=148 Identities=28% Similarity=0.531 Sum_probs=116.1
Q ss_pred CCCCCCCeEEEEEeeCCCCCceEEEEE-eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405 44 LIPGTSEVSVVVLHRDLPGNSVGITLA-GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI 122 (548)
Q Consensus 44 ml~~~~d~~tV~L~Kd~~~~GLGfsIa-gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~ 122 (548)
++...+..+.|++.|. .++.||+.|+ .|++..-+.|+|...+.+|||+++|+|..||+|++|||.++.+.....+...
T Consensus 639 ~FakkE~qKEVvv~K~-kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~ 717 (829)
T KOG3605|consen 639 HFAKKENQKEVVLEKH-KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSI 717 (829)
T ss_pred Hhhhhcccceeeeecc-cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHH
Confidence 3344455688999988 4899999887 4555555678999999999999999999999999999999999987775433
Q ss_pred h---hCCCCeEEEEE-----------ecCc--ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCE
Q psy6405 123 L---KRGPPVEITLI-----------KDGA--GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186 (548)
Q Consensus 123 l---k~g~~VtVtV~-----------RdGk--gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGv 186 (548)
+ +....|+++|. |... .+||+|..+ +|.++..||.|++.| +++|-||++|||+
T Consensus 718 Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNG----------iICSLlRGGIAERGG-VRVGHRIIEINgQ 786 (829)
T KOG3605|consen 718 IKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNG----------IICSLLRGGIAERGG-VRVGHRIIEINGQ 786 (829)
T ss_pred HhcccccceEEEEEecCCCceEEEeecccchhhccceeeCc----------EeehhhcccchhccC-ceeeeeEEEECCc
Confidence 3 33333444444 4322 356666543 467788999999999 9999999999999
Q ss_pred EcCCCCHHHHHHHHHHc
Q psy6405 187 PVTEMSRIEAWSLLKKL 203 (548)
Q Consensus 187 sV~~~t~~EavelLrs~ 203 (548)
+|.-..|+.++++|..+
T Consensus 787 SVVA~pHekIV~lLs~a 803 (829)
T KOG3605|consen 787 SVVATPHEKIVQLLSNA 803 (829)
T ss_pred eEEeccHHHHHHHHHHh
Confidence 99999999999999876
No 10
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=4.6e-11 Score=128.19 Aligned_cols=188 Identities=19% Similarity=0.241 Sum_probs=134.5
Q ss_pred HHHHhhhccHHHHHHhhhccccccccCCCccCCCCCCCCeEEEEEeeCC----------CCCceEEEEEeCCCCCCCCeE
Q psy6405 12 IASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDL----------PGNSVGITLAGGSDYESKEIT 81 (548)
Q Consensus 12 ~as~~Slis~~yv~~~ieev~~~~~~dgai~gml~~~~d~~tV~L~Kd~----------~~~GLGfsIagG~d~~~~gVv 81 (548)
+...+..+.++|+ .........++++.+|+.+..++++.++.++. ++.|+|+.+..... ..+.
T Consensus 43 ~~~~~~~i~~~y~----~~~~~~~l~~~ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~---~~~~ 115 (406)
T COG0793 43 LDDKYEGIREEYV----TRVDSDKLFEGAIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDI---GGVK 115 (406)
T ss_pred HHHHHHhhHHHHc----cCccHHHHHHHHHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecC---CCcE
Confidence 3445555666666 44555667888899999999999999887754 67899999985432 6899
Q ss_pred EEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--CCCCeEEEEEecCc--ceeEEEecCCCCCCCCCCe
Q psy6405 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK--RGPPVEITLIKDGA--GLGFSLEGGKDSPFGDQPL 157 (548)
Q Consensus 82 Vs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk--~g~~VtVtV~RdGk--gLGfSItgg~~s~lG~~gI 157 (548)
|.++.+++||+++| |++||+|++|||.++.+++..+++..++ .|..+++++.|.+. .+.+++++.. +
T Consensus 116 V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re~--------i 186 (406)
T COG0793 116 VVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTREE--------I 186 (406)
T ss_pred EEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEEE--------E
Confidence 99999999999999 9999999999999999999877776665 67789999999743 4566665543 3
Q ss_pred EEEEeccCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCC
Q psy6405 158 TVKKIFTGGCAEKNGQLKA-GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGY 223 (548)
Q Consensus 158 ~VssV~pgSpAekaGrLq~-GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~ 223 (548)
.+..+....- . ... +.+|..|.-.++...+..++...++...... +...++|+|...-
T Consensus 187 ~l~~v~~~~~---~--~~~~~~~IGyI~I~~F~~~~~~~~~~al~~L~~~~---~~GlIlDLR~N~G 245 (406)
T COG0793 187 ELEDVAAKEK---V--EEGGKGRIGYIRIPSFGEGTYEDLEKALDELKKQG---AKGLILDLRNNPG 245 (406)
T ss_pred eccceeeeee---e--ecCCCceEEEEEecccccchHHHHHHHHHHHHhcC---CcEEEEEeCCCCC
Confidence 3333321100 0 111 2357777777777777776677776664433 5677788887643
No 11
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.16 E-value=1.5e-10 Score=95.99 Aligned_cols=79 Identities=44% Similarity=0.810 Sum_probs=66.9
Q ss_pred EEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC-CeEE
Q psy6405 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP-PVEI 131 (548)
Q Consensus 53 tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~-~VtV 131 (548)
+|.+.|+ +..+|||++.++.+....+++|..|.++|||+++| |++||+|++|||+++.+|++.+++..++... ++++
T Consensus 1 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp EEEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CEEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 4678887 58999999998766433589999999999999999 9999999999999999999999887766443 5666
Q ss_pred EE
Q psy6405 132 TL 133 (548)
Q Consensus 132 tV 133 (548)
+|
T Consensus 79 ~V 80 (81)
T PF00595_consen 79 TV 80 (81)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 12
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.04 E-value=9.2e-10 Score=91.93 Aligned_cols=79 Identities=37% Similarity=0.563 Sum_probs=65.4
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeE
Q psy6405 64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGF 142 (548)
Q Consensus 64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGf 142 (548)
+||+.+....+ ..+++|..|.++|||+++| |++||+|++|||.++.++.+.. .+....++..+.|++.|+++...+
T Consensus 2 ~lGv~~~~~~~--~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~ 78 (82)
T PF13180_consen 2 GLGVTVQNLSD--TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEELTV 78 (82)
T ss_dssp E-SEEEEECSC--SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEE
T ss_pred EECeEEEEccC--CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence 67888885432 3589999999999999999 9999999999999998887766 344667889999999999998888
Q ss_pred EEe
Q psy6405 143 SLE 145 (548)
Q Consensus 143 SIt 145 (548)
+|+
T Consensus 79 ~v~ 81 (82)
T PF13180_consen 79 EVT 81 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 13
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.04 E-value=1.3e-09 Score=90.44 Aligned_cols=80 Identities=38% Similarity=0.550 Sum_probs=68.9
Q ss_pred EEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208 (548)
Q Consensus 130 tVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V 208 (548)
+|++.| ....+||++..+.... ..+++|..|.++|+|+++| |++||+|++|||+++.++++.+++++++.+.+ .+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v 76 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PV 76 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cE
Confidence 467888 7788999998876542 2369999999999999999 99999999999999999999999999999854 77
Q ss_pred eEEEE
Q psy6405 209 QDIKA 213 (548)
Q Consensus 209 ~LlV~ 213 (548)
++++.
T Consensus 77 ~L~V~ 81 (81)
T PF00595_consen 77 TLTVQ 81 (81)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77663
No 14
>KOG3580|consensus
Probab=98.98 E-value=1.6e-09 Score=118.44 Aligned_cols=151 Identities=28% Similarity=0.472 Sum_probs=112.2
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-hCCCCeE
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-KRGPPVE 130 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k~g~~Vt 130 (548)
..+.|.|....+.+|+.+. ..+||..+...|.|++.|.|+.||.|++|||+...+|+..++...+ ++...+.
T Consensus 200 ~kv~LvKsR~nEEyGlrLg-------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~ 272 (1027)
T KOG3580|consen 200 IKVLLVKSRANEEYGLRLG-------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQ 272 (1027)
T ss_pred ceEEEEeeccchhhccccc-------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceE
Confidence 3444544444667777776 4689999999999999999999999999999999999988764221 1222233
Q ss_pred EEEEe---------------------------------------------------------------------------
Q psy6405 131 ITLIK--------------------------------------------------------------------------- 135 (548)
Q Consensus 131 VtV~R--------------------------------------------------------------------------- 135 (548)
+.|.|
T Consensus 273 lvVlRD~~qtLiNiP~l~d~dSe~~disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~ 352 (1027)
T KOG3580|consen 273 LVVLRDSQQTLINIPSLNDSDSEIEDISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATP 352 (1027)
T ss_pred EEEEecCCceeeecCCCccccccccchhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCC
Confidence 33333
Q ss_pred --------------------------------------------------------------cCcceeEEEecCCCCCCC
Q psy6405 136 --------------------------------------------------------------DGAGLGFSLEGGKDSPFG 153 (548)
Q Consensus 136 --------------------------------------------------------------dGkgLGfSItgg~~s~lG 153 (548)
.|...|+.+.++.+
T Consensus 353 tPvks~~d~~~~~V~e~t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGND---- 428 (1027)
T KOG3580|consen 353 TPVKSTGDIAGTVVPETTKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGND---- 428 (1027)
T ss_pred CCccCccccCCccccccccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCc----
Confidence 22233333333322
Q ss_pred CCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEec
Q psy6405 154 DQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALG 215 (548)
Q Consensus 154 ~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~Ri 215 (548)
.+|+|..|.+++||++.| |+.||+|+.||.+++.++..++++..|-..+ +.+++++..+.
T Consensus 429 -VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 429 -VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK 489 (1027)
T ss_pred -eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence 389999999999999999 9999999999999999999999999987775 55777765544
No 15
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.91 E-value=3.5e-09 Score=112.97 Aligned_cols=175 Identities=21% Similarity=0.225 Sum_probs=108.7
Q ss_pred cccCCCccCCCCCCCCeEEEEEeeC----------CCCCceEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCCCCCE
Q psy6405 35 LDEGGCPSLLIPGTSEVSVVVLHRD----------LPGNSVGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQKGDR 102 (548)
Q Consensus 35 ~~~dgai~gml~~~~d~~tV~L~Kd----------~~~~GLGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq~GDr 102 (548)
.....++.+|+....++++.++..+ ....|+|+.+....+.. ..+++|..|.++|||+++| |++||+
T Consensus 47 ~~~~~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~~~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~ 125 (389)
T PLN00049 47 EETYAAIRKMLATLDDPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDV 125 (389)
T ss_pred HHHHHHHHHHHhhCCCCcccCcCHHHHHHHHHhccCCceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCE
Confidence 3445677889988888888665432 24567888876432211 1278999999999999999 999999
Q ss_pred EEEECCeeccCccHHHHHHHh--hCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEE
Q psy6405 103 ILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180 (548)
Q Consensus 103 ILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrI 180 (548)
|++|||++|.+++..++...+ ..+..+.++|.|++....++|+...-. ..++....+. ... .. ..+..|
T Consensus 126 Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~~v~---~~~v~~~~~~--~~~--~~--~~~~~I 196 (389)
T PLN00049 126 ILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTREKVS---LNPVKSRLCE--VPG--PG--AGSPKI 196 (389)
T ss_pred EEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeeeEe---ccceeeEEEe--ecc--cc--CCCCCE
Confidence 999999999988665544333 356789999999888777777654311 0112111110 000 00 112345
Q ss_pred EEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCC
Q psy6405 181 LTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLG 222 (548)
Q Consensus 181 LaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~ 222 (548)
..|.-.++...+..++.+.++...... ....++|+|...
T Consensus 197 gYi~i~~F~~~~~~~~~~~l~~l~~~~---~~glIlDLR~N~ 235 (389)
T PLN00049 197 GYIKLTTFNQNASSAVKEAIETLRANG---VDAFVLDLRDNS 235 (389)
T ss_pred EEEEeccccchhHHHHHHHHHHHHHCC---CCEEEEEcCCCC
Confidence 554444444444556666665543222 345667888664
No 16
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.85 E-value=2.3e-08 Score=82.92 Aligned_cols=80 Identities=28% Similarity=0.550 Sum_probs=63.0
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh--hCCCCeEEEEEec-Cc
Q psy6405 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKD-GA 138 (548)
Q Consensus 62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~Rd-Gk 138 (548)
+.++|+.+... ..+++|..|.++|||+++| |++||+|++|||.++.++++.+....+ ..+..+.+++.|. +.
T Consensus 1 ~~~lG~~~~~~----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~ 75 (85)
T cd00988 1 FGGIGLELKYD----DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDGE 75 (85)
T ss_pred CeEEEEEEEEc----CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCCC
Confidence 35789998753 3579999999999999999 999999999999999998555544333 3467788999887 66
Q ss_pred ceeEEEec
Q psy6405 139 GLGFSLEG 146 (548)
Q Consensus 139 gLGfSItg 146 (548)
.+.+++.+
T Consensus 76 ~~~~~~~~ 83 (85)
T cd00988 76 PREVTLTR 83 (85)
T ss_pred EEEEEEEE
Confidence 66666653
No 17
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.74 E-value=9.5e-08 Score=78.29 Aligned_cols=79 Identities=44% Similarity=0.752 Sum_probs=62.0
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCC-CeE
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGP-PVE 130 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~-~Vt 130 (548)
+.+.+.+.. ..+|||.+..+.+. ..+++|..|.++|||+++| |++||+|++|||.++..++..++...+.... .+.
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~-~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~ 78 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDS-GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT 78 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccC-CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEE
Confidence 457777763 78999999866432 3579999999999999999 9999999999999999888877766665432 444
Q ss_pred EEE
Q psy6405 131 ITL 133 (548)
Q Consensus 131 VtV 133 (548)
+++
T Consensus 79 l~v 81 (82)
T cd00992 79 LTV 81 (82)
T ss_pred EEE
Confidence 443
No 18
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.74 E-value=3.4e-08 Score=103.01 Aligned_cols=141 Identities=23% Similarity=0.406 Sum_probs=91.2
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh--hCCCCeEEEEEecCcc
Q psy6405 62 GNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKDGAG 139 (548)
Q Consensus 62 ~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l--k~g~~VtVtV~RdGkg 139 (548)
..++|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+|+..+....+ ..+..+.+++.|++..
T Consensus 50 ~~~lG~~~~~~----~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 124 (334)
T TIGR00225 50 LEGIGIQVGMD----DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS 124 (334)
T ss_pred eEEEEEEEEEE----CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence 45788888742 2479999999999999999 999999999999999998655544333 3577899999998776
Q ss_pred eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccC
Q psy6405 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLN 219 (548)
Q Consensus 140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr 219 (548)
..++++...... ...++.. .+.. ..|..|..|.-.++..-...++.+.++..... -+...++|+|
T Consensus 125 ~~~~v~l~~~~~-~~~~v~~-~~~~----------~~~~~igYi~i~~f~~~~~~~~~~~l~~l~~~---~~~~lIiDLR 189 (334)
T TIGR00225 125 KPLTFTLKRDRI-ELQTVKA-SVKK----------VGGKSVGYIRISSFSEHTTEDVKKALDKLEKK---NAKGYILDLR 189 (334)
T ss_pred ceEEEEEEEEEe-eccceEE-EEEc----------CCCcEEEEEEEEecccchHHHHHHHHHHHHhc---cCceEEEEcC
Confidence 666554332110 0011221 1111 11346666665566555566766776664222 2345667888
Q ss_pred CCC
Q psy6405 220 SLG 222 (548)
Q Consensus 220 ~~~ 222 (548)
...
T Consensus 190 ~N~ 192 (334)
T TIGR00225 190 GNP 192 (334)
T ss_pred CCC
Confidence 654
No 19
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.74 E-value=1.5e-07 Score=76.90 Aligned_cols=81 Identities=38% Similarity=0.694 Sum_probs=64.1
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE 130 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt 130 (548)
..+.+.+.. ..+||.+..+... ..+++|..|.++|||+++| |++||+|++|||..+.++++...+.... .+..+.
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~-~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~ 78 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDE-GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVT 78 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence 456677762 8999999864321 1589999999999999999 9999999999999999998877655444 344778
Q ss_pred EEEEec
Q psy6405 131 ITLIKD 136 (548)
Q Consensus 131 VtV~Rd 136 (548)
+++.|.
T Consensus 79 l~i~r~ 84 (85)
T smart00228 79 LTVLRG 84 (85)
T ss_pred EEEEeC
Confidence 887775
No 20
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.66 E-value=1.3e-07 Score=75.59 Aligned_cols=66 Identities=39% Similarity=0.735 Sum_probs=53.3
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC--CCCeEEEE
Q psy6405 64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR--GPPVEITL 133 (548)
Q Consensus 64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~--g~~VtVtV 133 (548)
++||.+....+ .+++|..|.++|||+.+| |++||+|++|||.++.++++.++...++. +..+++++
T Consensus 2 ~~G~~~~~~~~---~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE---GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC---CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999986543 489999999999999999 99999999999999999977766554442 35566654
No 21
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.64 E-value=1.9e-07 Score=76.67 Aligned_cols=76 Identities=30% Similarity=0.453 Sum_probs=59.0
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEE
Q psy6405 64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFS 143 (548)
Q Consensus 64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfS 143 (548)
.+|+.+... +.+++|..|.++|||+++| |++||+|++|||.++.++.. .+.....+..+.+++.|++....+.
T Consensus 2 ~~G~~~~~~----~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~~--~l~~~~~~~~v~l~v~r~g~~~~~~ 74 (80)
T cd00990 2 YLGLTLDKE----EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQD--RLKEYQAGDPVELTVFRDDRLIEVP 74 (80)
T ss_pred cccEEEEcc----CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHHH--HHHhcCCCCEEEEEEEECCEEEEEE
Confidence 467777632 3579999999999999999 99999999999999987443 3334446778899999988766666
Q ss_pred Eec
Q psy6405 144 LEG 146 (548)
Q Consensus 144 Itg 146 (548)
++.
T Consensus 75 v~~ 77 (80)
T cd00990 75 LTL 77 (80)
T ss_pred EEe
Confidence 653
No 22
>KOG3550|consensus
Probab=98.63 E-value=1.1e-07 Score=89.48 Aligned_cols=85 Identities=34% Similarity=0.613 Sum_probs=75.7
Q ss_pred CCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205 (548)
Q Consensus 126 g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g 205 (548)
..+..|.+-+..+++||.|.++++.. ++|+|+.|.|++.|++.|.|+.||++++|||+++.+-.|+.++++|+++ .
T Consensus 89 ahprvvelpktdeglgfnvmggkeqn---spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa-~ 164 (207)
T KOG3550|consen 89 AHPRVVELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA-V 164 (207)
T ss_pred CCCceeecCccccccceeeccCcccC---CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh-c
Confidence 45678888899999999999998763 5899999999999999999999999999999999999999999999998 4
Q ss_pred CceeEEEEe
Q psy6405 206 GTIQDIKAL 214 (548)
Q Consensus 206 ~~V~LlV~R 214 (548)
+.|.++|..
T Consensus 165 gsvklvvry 173 (207)
T KOG3550|consen 165 GSVKLVVRY 173 (207)
T ss_pred CcEEEEEec
Confidence 567777764
No 23
>KOG3550|consensus
Probab=98.62 E-value=1.3e-07 Score=89.08 Aligned_cols=85 Identities=32% Similarity=0.616 Sum_probs=72.7
Q ss_pred CCCCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-
Q psy6405 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR- 125 (548)
Q Consensus 47 ~~~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~- 125 (548)
+...++.|++.|. ..|+||.+.||.+ ++.+++|+.|.||+.|++-|.|+-||++++|||++|.+-.|..++..++.
T Consensus 87 ghahprvvelpkt--deglgfnvmggke-qnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa 163 (207)
T KOG3550|consen 87 GHAHPRVVELPKT--DEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA 163 (207)
T ss_pred cCCCCceeecCcc--ccccceeeccCcc-cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence 3467899999998 6999999999986 46799999999999999998899999999999999999999998877764
Q ss_pred CCCeEEEEE
Q psy6405 126 GPPVEITLI 134 (548)
Q Consensus 126 g~~VtVtV~ 134 (548)
...+.+.|.
T Consensus 164 ~gsvklvvr 172 (207)
T KOG3550|consen 164 VGSVKLVVR 172 (207)
T ss_pred cCcEEEEEe
Confidence 334555554
No 24
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.61 E-value=2.7e-07 Score=75.37 Aligned_cols=66 Identities=32% Similarity=0.593 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL 144 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI 144 (548)
.+++|..|.++|||+++| |++||+|++|||.++.++...........+..+.+++.|++....+.+
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l 77 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDLVDAVQENPGKPLTLTVERNGETITLTL 77 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEe
Confidence 468999999999999999 999999999999999988765533333346678899988776555544
No 25
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.58 E-value=2.3e-07 Score=77.25 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=55.6
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH-hhCCCCeEEEEEecCcceeEEEe
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI-LKRGPPVEITLIKDGAGLGFSLE 145 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~-lk~g~~VtVtV~RdGkgLGfSIt 145 (548)
.+++|..|.++|||+++| |++||+|++|||.++.++........ ...+..+.+++.|+++...++++
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 579999999999999999 99999999999999998876653333 33577899999998877766664
No 26
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.52 E-value=8e-07 Score=71.07 Aligned_cols=68 Identities=35% Similarity=0.519 Sum_probs=57.9
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK 212 (548)
Q Consensus 139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV 212 (548)
.+||.+..... .+++|..|.++|||+.+| |++||+|++|||.++.++++.++.++++...+..+.+.+
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 46777766543 259999999999999999 999999999999999999999999999988666777654
No 27
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.46 E-value=2.4e-06 Score=69.99 Aligned_cols=78 Identities=46% Similarity=0.697 Sum_probs=63.3
Q ss_pred EEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405 130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208 (548)
Q Consensus 130 tVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V 208 (548)
.+++.|. ...+|+.+...... ..+++|..|.++|+|+++| |++||+|++|||.++..+++.++.+.++...+ .+
T Consensus 3 ~~~l~~~~~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v 77 (82)
T cd00992 3 TVTLRKDPGGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EV 77 (82)
T ss_pred EEEEEeCCCCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eE
Confidence 4667775 56799999865432 1369999999999999998 99999999999999999999999999998633 55
Q ss_pred eEEE
Q psy6405 209 QDIK 212 (548)
Q Consensus 209 ~LlV 212 (548)
++.+
T Consensus 78 ~l~v 81 (82)
T cd00992 78 TLTV 81 (82)
T ss_pred EEEE
Confidence 5543
No 28
>KOG3571|consensus
Probab=98.42 E-value=6.1e-07 Score=97.23 Aligned_cols=88 Identities=27% Similarity=0.494 Sum_probs=74.3
Q ss_pred CCCeEEEEEeeCCCCCceEEEEEeCCCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh--
Q psy6405 48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-- 124 (548)
Q Consensus 48 ~~d~~tV~L~Kd~~~~GLGfsIagG~d~-~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-- 124 (548)
..++.+|.|..+. ..-||++|+|.... .+++++|.+|+++|+.+..||+.+||.|+.||.+...+|+-.++|..++
T Consensus 247 slnIITV~LnMe~-vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREa 325 (626)
T KOG3571|consen 247 SLNIITVTLNMET-VNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREA 325 (626)
T ss_pred ceeEEEEEecccc-cccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHH
Confidence 3578899998883 77799999985433 4679999999999999999999999999999999999999999886655
Q ss_pred --CCCCeEEEEEec
Q psy6405 125 --RGPPVEITLIKD 136 (548)
Q Consensus 125 --~g~~VtVtV~Rd 136 (548)
...+++++|.+.
T Consensus 326 V~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 326 VSRPGPIKLTVAKC 339 (626)
T ss_pred hccCCCeEEEEeec
Confidence 345688888874
No 29
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.42 E-value=3.3e-07 Score=104.04 Aligned_cols=166 Identities=17% Similarity=0.238 Sum_probs=98.6
Q ss_pred cCCCccCCCCCCCCeEEEEEeeCC----------CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEE
Q psy6405 37 EGGCPSLLIPGTSEVSVVVLHRDL----------PGNSVGITLAGGSDYESKEITVHKVISGTPADRD-GRLQKGDRILS 105 (548)
Q Consensus 37 ~dgai~gml~~~~d~~tV~L~Kd~----------~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqA-GrLq~GDrILa 105 (548)
++.++.+|+... ++++.++.... ...|+|+.+... .+.++|..|.|||||+++ | |++||+|++
T Consensus 209 ~~~~i~~m~~~l-DphT~Y~sp~e~e~f~~~~~~~~~GIGa~l~~~----~~~~~V~~vipGsPA~ka~g-Lk~GD~Ila 282 (667)
T PRK11186 209 FQLAMNAFAREI-DPHTSYLSPRNAEQFNTEMNLSLEGIGAVLQMD----DDYTVINSLVAGGPAAKSKK-LSVGDKIVG 282 (667)
T ss_pred HHHHHHHHHhCC-CCCccccChHHHHHhhhccCCceeEEEEEEEEe----CCeEEEEEccCCChHHHhCC-CCCCCEEEE
Confidence 445555555533 56655554432 356888888742 346899999999999998 7 999999999
Q ss_pred EC--C---eeccCccHHHHHHHhh--CCCCeEEEEEecC---cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC
Q psy6405 106 IN--G---KSMKGLTHKESLAILK--RGPPVEITLIKDG---AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK 175 (548)
Q Consensus 106 IN--G---v~V~~~s~~~aV~~lk--~g~~VtVtV~RdG---kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq 175 (548)
|| | +++.+|+...++..++ .|..|.++|.|.+ ....++|++..-. +....+ -..|.. +
T Consensus 283 Vn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~~i~-l~~~~~-k~~v~~---------~- 350 (667)
T PRK11186 283 VGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTRDKIR-LEDRAV-KMSVKT---------V- 350 (667)
T ss_pred ECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEeeeec-ccccce-EEEEEe---------c-
Confidence 99 4 3566888777766665 5777999998843 3455666543211 000001 011111 0
Q ss_pred CCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCC
Q psy6405 176 AGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGY 223 (548)
Q Consensus 176 ~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~ 223 (548)
.+..|..|.-.++..-...++.+.++...... +...++|+|...-
T Consensus 351 ~~~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~---v~gLIlDLR~NgG 395 (667)
T PRK11186 351 GGEKVGVLDIPGFYVGLTDDVKKQLQKLEKQN---VSGIIIDLRGNGG 395 (667)
T ss_pred CCCcEEEEEecccccchHHHHHHHHHHHHHCC---CCEEEEEcCCCCC
Confidence 13344444433333334566767766653322 3455678886643
No 30
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.38 E-value=6.9e-06 Score=67.12 Aligned_cols=82 Identities=41% Similarity=0.596 Sum_probs=66.4
Q ss_pred eEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208 (548)
Q Consensus 129 VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V 208 (548)
..+.+.+....+|+.+....... .+++|..|.++|+|+++| |++||+|++||+..+.++++.++..+++.. +..+
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~-~~~~ 77 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKV 77 (85)
T ss_pred EEEEEEECCCcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeE
Confidence 45667777778899987654321 369999999999999999 999999999999999999988888888776 4477
Q ss_pred eEEEEec
Q psy6405 209 QDIKALG 215 (548)
Q Consensus 209 ~LlV~Ri 215 (548)
.+.+.|.
T Consensus 78 ~l~i~r~ 84 (85)
T smart00228 78 TLTVLRG 84 (85)
T ss_pred EEEEEeC
Confidence 7777663
No 31
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.37 E-value=1.6e-06 Score=71.67 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEGG 147 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItgg 147 (548)
.+++|..|.++|||+. | |++||+|++|||.++.++...... .....+..+.+++.|+++...++++..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~ 76 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILK 76 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEe
Confidence 4789999999999986 8 999999999999999988665533 333567789999999888777766543
No 32
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=1.6e-06 Score=72.19 Aligned_cols=63 Identities=40% Similarity=0.634 Sum_probs=51.5
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCccee
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLG 141 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLG 141 (548)
.+++|..|.++|||+++| |++||+|++|||.++.+++.... +.....+..+.+++.|++..+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~ 87 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGKELT 87 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEE
Confidence 479999999999999999 99999999999999998876553 3333347778899988775443
No 33
>KOG3549|consensus
Probab=98.30 E-value=6e-07 Score=93.76 Aligned_cols=110 Identities=25% Similarity=0.396 Sum_probs=87.8
Q ss_pred CCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecC-cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC
Q psy6405 97 LQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG-AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK 175 (548)
Q Consensus 97 Lq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdG-kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq 175 (548)
|+.--.|+.|...+|...+-. .......+|++.|.. .++|++|+++.+..+ |++|+.|...-.|+..|.|-
T Consensus 29 L~Ltke~L~iQkqdVvcvsG~-----p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~---PvviSkI~kdQaAd~tG~LF 100 (505)
T KOG3549|consen 29 LNLTKELLSIQKQDVVCVSGP-----PMESKERTVTIRRQKVGGLGLSIKGGAEHNL---PVVISKIYKDQAADITGQLF 100 (505)
T ss_pred hhhHHHHhhhhccceEecCCC-----CccCCceeEEEEeeecCcceeeeccccccCc---cEEeehhhhhhhhhhcCceE
Confidence 555566666666555444311 112455789998854 579999999987643 79999999999999999999
Q ss_pred CCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405 176 AGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG 215 (548)
Q Consensus 176 ~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri 215 (548)
+||-|++|||+.|..+.|+|++.+||.+ +.+|+++|..-
T Consensus 101 vGDAilqvNGi~v~~c~HeevV~iLRNA-GdeVtlTV~~l 139 (505)
T KOG3549|consen 101 VGDAILQVNGIYVTACPHEEVVNILRNA-GDEVTLTVKHL 139 (505)
T ss_pred eeeeeEEeccEEeecCChHHHHHHHHhc-CCEEEEEeHhh
Confidence 9999999999999999999999999998 78999998753
No 34
>KOG3551|consensus
Probab=98.29 E-value=1.1e-06 Score=92.81 Aligned_cols=86 Identities=29% Similarity=0.492 Sum_probs=74.8
Q ss_pred CeEEEEEe-cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG 206 (548)
Q Consensus 128 ~VtVtV~R-dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~ 206 (548)
...|+|.+ +..++|++|+++++.. ++|.|++|.++-+|++++.|..||.|++|||.++...+|+|+++.|+.. ++
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra-Gk 160 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA-GK 160 (506)
T ss_pred cceeEEEEecCCcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh-Cc
Confidence 35677665 7789999999998764 5899999999999999999999999999999999999999999999998 67
Q ss_pred ceeEEEEeccc
Q psy6405 207 TIQDIKALGYD 217 (548)
Q Consensus 207 ~V~LlV~RilD 217 (548)
+|.+.|...-+
T Consensus 161 eV~levKy~RE 171 (506)
T KOG3551|consen 161 EVLLEVKYMRE 171 (506)
T ss_pred eeeeeeeeehh
Confidence 77777765433
No 35
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.27 E-value=2.3e-06 Score=71.44 Aligned_cols=72 Identities=26% Similarity=0.343 Sum_probs=55.9
Q ss_pred eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH-HcCCCceeEEEEecccc
Q psy6405 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK-KLNDGTIQDIKALGYDL 218 (548)
Q Consensus 140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr-s~~g~~V~LlV~RilDL 218 (548)
+|+.+...... .++.|.+|.++|||+++| |++||+|++|||.++.++. ++...+. ..++.++.+.+.|....
T Consensus 3 lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 3 LGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSE--DLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp -SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHH--HHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred ECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence 45556544331 369999999999999999 9999999999999997665 7777774 45678999999997654
No 36
>KOG3549|consensus
Probab=98.25 E-value=1.8e-06 Score=90.24 Aligned_cols=84 Identities=29% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP 127 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~ 127 (548)
..-++|.++|. +-+|||++|.||.++ +-+|+|+.|.....|+..|.|-+||-|++|||.-|+.+.|++++..++ .|+
T Consensus 53 s~eRtVtirRQ-~vGGlGLSIKGGaEH-n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGd 130 (505)
T KOG3549|consen 53 SKERTVTIRRQ-KVGGLGLSIKGGAEH-NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGD 130 (505)
T ss_pred CCceeEEEEee-ecCcceeeecccccc-CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCC
Confidence 34588999888 489999999999875 568999999999999999999999999999999999999999998776 578
Q ss_pred CeEEEEE
Q psy6405 128 PVEITLI 134 (548)
Q Consensus 128 ~VtVtV~ 134 (548)
.++++|.
T Consensus 131 eVtlTV~ 137 (505)
T KOG3549|consen 131 EVTLTVK 137 (505)
T ss_pred EEEEEeH
Confidence 8888886
No 37
>KOG3553|consensus
Probab=98.24 E-value=4.9e-07 Score=79.93 Aligned_cols=71 Identities=28% Similarity=0.535 Sum_probs=59.4
Q ss_pred ceEEEEEeCCCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEE
Q psy6405 64 SVGITLAGGSDYE---------SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134 (548)
Q Consensus 64 GLGfsIagG~d~~---------~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~ 134 (548)
.+||.|-||.|.. +.+++|+.|.+||||+.|| |+.+|.|+.|||-+..-++|..++..++....+.+.|.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLVa 114 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLVA 114 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHHH
Confidence 5899999886642 4699999999999999999 99999999999999999999999877765554444444
Q ss_pred e
Q psy6405 135 K 135 (548)
Q Consensus 135 R 135 (548)
|
T Consensus 115 R 115 (124)
T KOG3553|consen 115 R 115 (124)
T ss_pred h
Confidence 4
No 38
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.23 E-value=4.2e-06 Score=69.36 Aligned_cols=70 Identities=29% Similarity=0.442 Sum_probs=57.6
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG 215 (548)
Q Consensus 139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri 215 (548)
++|+.+.... .+++|..|.++|||+++| |++||+|++|||.++.++++.++...++...+..+.+.+.|.
T Consensus 3 ~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 3 GIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4566665432 258999999999999999 999999999999999999877888888776566788888775
No 39
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.14 E-value=9.8e-06 Score=82.65 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=64.4
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeE
Q psy6405 64 SVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGF 142 (548)
Q Consensus 64 GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGf 142 (548)
.+|+......+ ...++.|..+.++|||+++| |++||+|++|||.++.++.... ++..++.+..+.|+|.|+|+...+
T Consensus 178 ~lgi~p~~~~g-~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i 255 (259)
T TIGR01713 178 YIRLSPVMKND-KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQREDI 255 (259)
T ss_pred eEeEEEEEeCC-ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence 56777653222 13589999999999999999 9999999999999999987765 455666778899999999887766
Q ss_pred EEe
Q psy6405 143 SLE 145 (548)
Q Consensus 143 SIt 145 (548)
.+.
T Consensus 256 ~v~ 258 (259)
T TIGR01713 256 YVR 258 (259)
T ss_pred EEE
Confidence 654
No 40
>KOG3551|consensus
Probab=98.12 E-value=3.4e-06 Score=89.22 Aligned_cols=81 Identities=32% Similarity=0.555 Sum_probs=70.7
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE 130 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt 130 (548)
+.|.+.|. +.+|+|++|.||.+. .-++.|+.|.+|-.|++++.|..||.|++|||.++...+|+++++.++ .|+.|.
T Consensus 86 R~V~V~K~-d~gGLGISIKGGreN-kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 86 RRVRVVKQ-DAGGLGISIKGGREN-KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred ceeEEEEe-cCCcceEEeecCccc-CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 77888887 489999999999874 368999999999999999999999999999999999999999988776 466666
Q ss_pred EEEE
Q psy6405 131 ITLI 134 (548)
Q Consensus 131 VtV~ 134 (548)
+.|.
T Consensus 164 levK 167 (506)
T KOG3551|consen 164 LEVK 167 (506)
T ss_pred eeee
Confidence 6654
No 41
>KOG1892|consensus
Probab=98.10 E-value=7.9e-06 Score=93.70 Aligned_cols=88 Identities=32% Similarity=0.647 Sum_probs=73.0
Q ss_pred CCCeEEEEEeeCCCCCceEEEEE--eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh-h
Q psy6405 48 TSEVSVVVLHRDLPGNSVGITLA--GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL-K 124 (548)
Q Consensus 48 ~~d~~tV~L~Kd~~~~GLGfsIa--gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l-k 124 (548)
+.++..|.|.|. .|+|++|+ .|.+...-+|+|.+|++|++|+..|||..||++++|||.++.+.+.+.+...+ +
T Consensus 931 ~pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtr 1007 (1629)
T KOG1892|consen 931 EPEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTR 1007 (1629)
T ss_pred CCceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhc
Confidence 456788888886 78888886 34444456999999999999999999999999999999999999999876544 4
Q ss_pred CCCCeEEEEEecCc
Q psy6405 125 RGPPVEITLIKDGA 138 (548)
Q Consensus 125 ~g~~VtVtV~RdGk 138 (548)
.|..|.+.|.+.|.
T Consensus 1008 tg~vV~leVaKqgA 1021 (1629)
T KOG1892|consen 1008 TGNVVHLEVAKQGA 1021 (1629)
T ss_pred cCCeEEEehhhhhh
Confidence 68889999987653
No 42
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=1.4e-05 Score=86.24 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=64.8
Q ss_pred cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG 215 (548)
Q Consensus 136 dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri 215 (548)
.-.++|+.+..... ..+.|.++.+++||+++| |++||+|+.|||.++.+++..++++.+++.+++.|++++.|.
T Consensus 98 ~~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 33566777765442 148899999999999999 999999999999999999999999999999999999999996
Q ss_pred c
Q psy6405 216 Y 216 (548)
Q Consensus 216 l 216 (548)
.
T Consensus 172 ~ 172 (406)
T COG0793 172 G 172 (406)
T ss_pred C
Confidence 3
No 43
>KOG3553|consensus
Probab=98.00 E-value=1.1e-05 Score=71.54 Aligned_cols=72 Identities=32% Similarity=0.476 Sum_probs=59.2
Q ss_pred eeEEEecCCCC-----CC--CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405 140 LGFSLEGGKDS-----PF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIK 212 (548)
Q Consensus 140 LGfSItgg~~s-----~l--G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV 212 (548)
+||+|-++.+. ++ ...+++|+.|.++|||+.+| |+.+|.|++|||..++-++|+.+++.|++. ..+.++|
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~--~vl~mLV 113 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE--EVLRMLV 113 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh--HHHHHHH
Confidence 68888776543 22 23589999999999999999 999999999999999999999999999874 3445555
Q ss_pred Ee
Q psy6405 213 AL 214 (548)
Q Consensus 213 ~R 214 (548)
.|
T Consensus 114 aR 115 (124)
T KOG3553|consen 114 AR 115 (124)
T ss_pred Hh
Confidence 44
No 44
>KOG3651|consensus
Probab=97.98 E-value=2.5e-05 Score=80.75 Aligned_cols=82 Identities=35% Similarity=0.567 Sum_probs=68.9
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeE
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVE 130 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~Vt 130 (548)
..|+++|+ ...-+|++|-||..+. +.++|..|..++||++.|+++.||.|++|||++|++.+..++...+. .-.+++
T Consensus 6 ~~v~ltKD-~~nliGISIGGGapyC-PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~ 83 (429)
T KOG3651|consen 6 ETVELTKD-EKNLIGISIGGGAPYC-PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVK 83 (429)
T ss_pred CcEEEeec-cccceeEEecCCCCcC-CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceE
Confidence 46889998 4778999999998775 67899999999999999999999999999999999998887654443 346677
Q ss_pred EEEEe
Q psy6405 131 ITLIK 135 (548)
Q Consensus 131 VtV~R 135 (548)
|.+.+
T Consensus 84 IhyNK 88 (429)
T KOG3651|consen 84 IHYNK 88 (429)
T ss_pred EEehh
Confidence 77765
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.97 E-value=2.1e-05 Score=85.13 Aligned_cols=69 Identities=30% Similarity=0.468 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG 147 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg 147 (548)
.+++|..|.++|||+++| |++||+|++|||+++.++.+.........+.++.+++.|+++.+.++++..
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 271 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPE 271 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEc
Confidence 368999999999999999 999999999999999999776654444567789999999998877777654
No 46
>KOG3571|consensus
Probab=97.95 E-value=3.4e-05 Score=84.06 Aligned_cols=90 Identities=31% Similarity=0.489 Sum_probs=72.6
Q ss_pred eEEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc--CC
Q psy6405 129 VEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL--ND 205 (548)
Q Consensus 129 VtVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~--~g 205 (548)
++|++.-+... +|++|.+.... -|+.+|||.+|.++|+.+..|||.+||.|++||.+++.+++-.++|..||.. ..
T Consensus 251 ITV~LnMe~vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~ 329 (626)
T KOG3571|consen 251 ITVTLNMETVNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRP 329 (626)
T ss_pred EEEEecccccccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccC
Confidence 44444434344 78898875433 2445899999999999999999999999999999999999999999999986 34
Q ss_pred CceeEEEEeccccC
Q psy6405 206 GTIQDIKALGYDLN 219 (548)
Q Consensus 206 ~~V~LlV~RilDLr 219 (548)
.+++++|....|..
T Consensus 330 gPi~ltvAk~~DP~ 343 (626)
T KOG3571|consen 330 GPIKLTVAKCWDPN 343 (626)
T ss_pred CCeEEEEeeccCCC
Confidence 57899998887744
No 47
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.92 E-value=2.7e-05 Score=84.78 Aligned_cols=68 Identities=25% Similarity=0.463 Sum_probs=57.9
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGG 147 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg 147 (548)
+++|..|.++|||+++| |++||+|++|||+++.+|.+.........+..+.+++.|+++...++++..
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 289 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPD 289 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence 57899999999999999 999999999999999998877654444567789999999998877777653
No 48
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.90 E-value=3.2e-05 Score=81.77 Aligned_cols=69 Identities=26% Similarity=0.399 Sum_probs=59.3
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGG 147 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg 147 (548)
.+++|..|.++|||+++| |++||+|++|||+++.++.... .+.....+..+.+++.|+++...++++.+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 347 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTID 347 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 479999999999999999 9999999999999999987765 44455678889999999988877777654
No 49
>PRK10898 serine endoprotease; Provisional
Probab=97.90 E-value=3.7e-05 Score=81.47 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecC
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGG 147 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg 147 (548)
.+++|..|.++|||+++| |++||+|++|||+++.++.+.. .+.....+..+.+++.|+++.+.+.++.+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 348 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ 348 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 589999999999999999 9999999999999999886654 45555678889999999988877777654
No 50
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.89 E-value=3.5e-05 Score=64.15 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=50.2
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecc
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGY 216 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ril 216 (548)
.++.|.+|.++|||+++| |+.||+|++|||.++.++. ++...+... .+..+.+.+.|..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECC
Confidence 368999999999999999 9999999999999999766 787888765 3667888887754
No 51
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.89 E-value=5.9e-05 Score=61.50 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=48.9
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY 216 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril 216 (548)
++.|..|.++|+|+++| |++||+|++|||.++.++. ++...++...+..+.+.+.|..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~--~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHHCCCceEEEEEEECC
Confidence 47899999999999999 9999999999999999765 7778887765567777777643
No 52
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.87 E-value=5.4e-05 Score=81.17 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=55.0
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD 217 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD 217 (548)
++.|..|.++|||+++| |+.||+|++|||+++.+++..++..+++...+..+.+.+.|...
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 58899999999999999 99999999999999999888888888987778889999888654
No 53
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.83 E-value=0.00011 Score=79.93 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=75.2
Q ss_pred EEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEE-ecCcceeEEEecCCCCCCCCC-----
Q psy6405 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI-KDGAGLGFSLEGGKDSPFGDQ----- 155 (548)
Q Consensus 82 Vs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~-RdGkgLGfSItgg~~s~lG~~----- 155 (548)
|..|.|+|||+++| |++||+|++|||+++.+|....... .+..+.++|. |+|+.+.+.+.......+|..
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~~~l---~~e~l~L~V~~rdGe~~~l~Ie~~~dedlG~~f~~~~ 77 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQFLC---ADEELELEVLDANGESHQIEIEKDLDEDLGLEFTTAL 77 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHh---cCCcEEEEEEcCCCeEEEEEEecCCCCCCcEEecccc
Confidence 57799999999999 9999999999999999997754322 3466888886 677777777776554444321
Q ss_pred ----------Ce--EEEEeccCChhhhcCCCCCCCE---EEEECCEEcCCCCHHHHHHHHHHc
Q psy6405 156 ----------PL--TVKKIFTGGCAEKNGQLKAGDE---ILTINNVPVTEMSRIEAWSLLKKL 203 (548)
Q Consensus 156 ----------gI--~VssV~pgSpAekaGrLq~GDr---ILaVNGvsV~~~t~~EavelLrs~ 203 (548)
.+ +|....+|. -+ .-.++-.|. .++=|.+++++++..+...+++..
T Consensus 78 ~d~~~~C~N~C~FCFidQlP~gm-R~-sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~~~ 138 (433)
T TIGR03279 78 FDGLIQCNNRCPFCFIDQQPPGK-RE-SLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQLR 138 (433)
T ss_pred CCcccccCCcCceEeccCCCCCC-cC-cceeccCcchhhhhccceeeecCCCHHHHHHHHHcC
Confidence 00 111111111 00 011344443 344477889999988877776653
No 54
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.80 E-value=6.6e-05 Score=82.58 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=82.8
Q ss_pred hhccHHHHHHhhhccccccccCCCccCCCCCCCCe--------EEEEEee-CCCCCceEEEEEeCCCCCCCCeEEEEEcC
Q psy6405 17 SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEV--------SVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVIS 87 (548)
Q Consensus 17 Slis~~yv~~~ieev~~~~~~dgai~gml~~~~d~--------~tV~L~K-d~~~~GLGfsIagG~d~~~~gVvVs~V~p 87 (548)
+-+++++++.+++++ .+.+....++..+.+..++ ..+.+.. ..+..+||+.+. ..++..+|..|.+
T Consensus 397 ~~~t~e~v~av~~~~-tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~~~~~~LGl~v~----~~~g~~~i~~V~~ 471 (558)
T COG3975 397 RGYTPEDVQAVLENV-TGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKPREAYYLGLKVK----SEGGHEKITFVFP 471 (558)
T ss_pred cCCCHHHHHHHHHhh-ccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecCCCCcccceEec----ccCCeeEEEecCC
Confidence 344666777777777 4444444444444433222 2333322 223458999887 3346789999999
Q ss_pred CChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCC
Q psy6405 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDS 150 (548)
Q Consensus 88 GSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s 150 (548)
+|||++|| |.+||+|++|||.+- .....+.+..+.|.+.|.+.-..+.|+.+...
T Consensus 472 ~gPA~~AG-l~~Gd~ivai~G~s~-------~l~~~~~~d~i~v~~~~~~~L~e~~v~~~~~~ 526 (558)
T COG3975 472 GGPAYKAG-LSPGDKIVAINGISD-------QLDRYKVNDKIQVHVFREGRLREFLVKLGGDP 526 (558)
T ss_pred CChhHhcc-CCCccEEEEEcCccc-------cccccccccceEEEEccCCceEEeecccCCCc
Confidence 99999999 999999999999811 12334567889999999999888888776544
No 55
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.75 E-value=6.3e-05 Score=78.71 Aligned_cols=73 Identities=26% Similarity=0.339 Sum_probs=59.7
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecccc
Q psy6405 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDL 218 (548)
Q Consensus 139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDL 218 (548)
++|+.+.... .++.|..|.++|||+++| |++||+|++|||.++.+++..++...++...+..+.+.+.|....
T Consensus 52 ~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 124 (334)
T TIGR00225 52 GIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKS 124 (334)
T ss_pred EEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence 4666665432 148899999999999999 999999999999999999877888888776677888888886543
No 56
>KOG1892|consensus
Probab=97.72 E-value=7.5e-05 Score=86.01 Aligned_cols=86 Identities=26% Similarity=0.435 Sum_probs=71.2
Q ss_pred CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT 207 (548)
Q Consensus 128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~ 207 (548)
.++|++.+. .++|++|.......-...||||++|.+|++|+..|||+.||++++|||.++.+.+.+.+.+++... +..
T Consensus 934 i~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt-g~v 1011 (1629)
T KOG1892|consen 934 IITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT-GNV 1011 (1629)
T ss_pred eEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc-CCe
Confidence 367777776 889999976543322234799999999999999999999999999999999999999999999876 677
Q ss_pred eeEEEEec
Q psy6405 208 IQDIKALG 215 (548)
Q Consensus 208 V~LlV~Ri 215 (548)
|.+.|...
T Consensus 1012 V~leVaKq 1019 (1629)
T KOG1892|consen 1012 VHLEVAKQ 1019 (1629)
T ss_pred EEEehhhh
Confidence 88877643
No 57
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.70 E-value=9e-05 Score=80.02 Aligned_cols=64 Identities=38% Similarity=0.599 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH-HHHhhCCCCeEEEEEecCcceeE
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITLIKDGAGLGF 142 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a-V~~lk~g~~VtVtV~RdGkgLGf 142 (548)
.+++|..|.++|||+++| |++||+|++|||+++.++.+... +...+.+..+.++|.|++..+-+
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~ 426 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILRGGATIFV 426 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 579999999999999999 99999999999999999876664 34445678899999998775433
No 58
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.65 E-value=0.00014 Score=60.49 Aligned_cols=58 Identities=29% Similarity=0.381 Sum_probs=48.6
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEecc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALGY 216 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~Ril 216 (548)
+++|..|.++|||+++| |+.||+|++|||.++.++. ++.+.+.... +..+.+.+.|..
T Consensus 25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECC
Confidence 68999999999999999 9999999999999999876 6667776653 567777777653
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.65 E-value=0.00025 Score=58.14 Aligned_cols=55 Identities=24% Similarity=0.235 Sum_probs=43.9
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGY 216 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ril 216 (548)
++.|..|.++|+|+++| |++||+|++|||.++.++. ++++.. .+..+.+.+.|..
T Consensus 13 ~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~-----~~l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 13 LGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQ-----DRLKEYQAGDPVELTVFRDD 68 (80)
T ss_pred cEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHH-----HHHHhcCCCCEEEEEEEECC
Confidence 48899999999999999 9999999999999988632 345443 4567777777654
No 60
>PRK10139 serine endoprotease; Provisional
Probab=97.61 E-value=0.00016 Score=79.29 Aligned_cols=65 Identities=23% Similarity=0.469 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEE
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL 144 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSI 144 (548)
.+++|..|.++|||+++| |++||+|++|||+++.+|.....+.... ...+.+++.|++..+-+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~l~~~-~~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVLAAK-PAIIALQIVRGNESIYLLL 454 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhC-CCeEEEEEEECCEEEEEEe
Confidence 478999999999999999 9999999999999999998766443333 3678899999887655443
No 61
>KOG1421|consensus
Probab=97.61 E-value=0.00032 Score=79.03 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCC------
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP------ 151 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~------ 151 (548)
+-++|..|.++|||++. |++||.+++||+..+.++.....+.-...|+.+.++|.|.|+.+.++++.+....
T Consensus 303 gmLvV~~vL~~gpa~k~--Le~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~ 380 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRF 380 (955)
T ss_pred eeEEEEEeccCCchhhc--cCCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceE
Confidence 35688999999999875 9999999999988887776555444445788999999999998888886543211
Q ss_pred --------------------CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405 152 --------------------FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205 (548)
Q Consensus 152 --------------------lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g 205 (548)
+...+++|.+-. ++++...+ .. |-.|.+|+++++.... .+++.++..+.
T Consensus 381 levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPdLd--aFidvlk~L~d 449 (955)
T KOG1421|consen 381 LEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPDLD--AFIDVLKELPD 449 (955)
T ss_pred EEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCCHH--HHHHHHHhccC
Confidence 122478887765 78887776 34 8899999999988766 88888888753
No 62
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.59 E-value=0.0002 Score=59.15 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=48.0
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD 217 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD 217 (548)
++.|..|.++|+|+. | |++||+|++|||.++.++. ++.+++.. ..+..+.+.+.|...
T Consensus 9 Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~--~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 9 GVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred CEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCE
Confidence 588999999999986 7 9999999999999999765 77788875 346678888877543
No 63
>KOG3552|consensus
Probab=97.55 E-value=7.7e-05 Score=85.79 Aligned_cols=77 Identities=30% Similarity=0.563 Sum_probs=64.6
Q ss_pred CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhC-CCC
Q psy6405 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPP 128 (548)
Q Consensus 50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~-g~~ 128 (548)
+++.|.++|. ..+||.++-| .+|+|..|.+|||+ .|+|++||+|++|||.+|+....+.++..++. ...
T Consensus 55 ~pr~vq~~r~---~~lGFgfvag-----rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~s 124 (1298)
T KOG3552|consen 55 EPRQVQLQRN---ASLGFGFVAG-----RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESS 124 (1298)
T ss_pred cchhhhhhcc---ccccceeecC-----CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhh
Confidence 5888999887 5777777754 47999999999999 48899999999999999999999888877774 345
Q ss_pred eEEEEEec
Q psy6405 129 VEITLIKD 136 (548)
Q Consensus 129 VtVtV~Rd 136 (548)
+.++|.+.
T Consensus 125 v~ltV~qP 132 (1298)
T KOG3552|consen 125 VNLTVCQP 132 (1298)
T ss_pred cceEEecc
Confidence 88888874
No 64
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.53 E-value=0.00036 Score=75.35 Aligned_cols=78 Identities=28% Similarity=0.483 Sum_probs=59.5
Q ss_pred CCceEEEEEeCCCCCCCCeEEEEEc--------CCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEE
Q psy6405 62 GNSVGITLAGGSDYESKEITVHKVI--------SGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL 133 (548)
Q Consensus 62 ~~GLGfsIagG~d~~~~gVvVs~V~--------pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV 133 (548)
+..+|+.+. ..+|+|.... .+|||+++| |++||+|++|||.++.+|.+...+.....+..+.+++
T Consensus 95 G~~iGI~l~------t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~DL~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 95 GQSIGVKLN------TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMDDLANLINKAGGEKLTLTI 167 (402)
T ss_pred CEEEEEEEe------cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhCCCCeEEEEE
Confidence 456777776 2467775543 268999999 9999999999999999998766443333477899999
Q ss_pred EecCcceeEEEec
Q psy6405 134 IKDGAGLGFSLEG 146 (548)
Q Consensus 134 ~RdGkgLGfSItg 146 (548)
.|+++.+.+++++
T Consensus 168 ~R~Ge~~tv~V~P 180 (402)
T TIGR02860 168 ERGGKIIETVIKP 180 (402)
T ss_pred EECCEEEEEEEEE
Confidence 9988877777763
No 65
>PRK10942 serine endoprotease; Provisional
Probab=97.51 E-value=0.00025 Score=78.03 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=52.8
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEE
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFS 143 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfS 143 (548)
.+++|..|.++|+|+++| |++||+|++|||++|.++.....+.... ...+.++|.|.+..+-+.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~dl~~~l~~~-~~~v~l~V~R~g~~~~v~ 471 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIAELRKILDSK-PSVLALNIQRGDSSIYLL 471 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhC-CCeEEEEEEECCEEEEEE
Confidence 479999999999999999 9999999999999999997766443333 367889999988765444
No 66
>KOG3651|consensus
Probab=97.49 E-value=0.00044 Score=71.71 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=65.4
Q ss_pred EEEEEecCcc-eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405 130 EITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208 (548)
Q Consensus 130 tVtV~RdGkg-LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V 208 (548)
+|++.++.+. +|++|-++..-- .-++|..|..++||++.|+++.||.|++|||++|.+.+-.++.++|+.. ..+|
T Consensus 7 ~v~ltKD~~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~-~~eV 82 (429)
T KOG3651|consen 7 TVELTKDEKNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS-LNEV 82 (429)
T ss_pred cEEEeeccccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh-ccce
Confidence 5677776554 799998775331 2489999999999999999999999999999999999999999999987 4566
Q ss_pred eEEE
Q psy6405 209 QDIK 212 (548)
Q Consensus 209 ~LlV 212 (548)
.+..
T Consensus 83 ~Ihy 86 (429)
T KOG3651|consen 83 KIHY 86 (429)
T ss_pred EEEe
Confidence 6654
No 67
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.37 E-value=0.00038 Score=79.56 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=58.2
Q ss_pred ceeEEEecCCCCCCCCCCeEEEEeccCChhhhc-CCCCCCCEEEEECC-----EEcCCCCHHHHHHHHHHcCCCceeEEE
Q psy6405 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINN-----VPVTEMSRIEAWSLLKKLNDGTIQDIK 212 (548)
Q Consensus 139 gLGfSItgg~~s~lG~~gI~VssV~pgSpAeka-GrLq~GDrILaVNG-----vsV~~~t~~EavelLrs~~g~~V~LlV 212 (548)
++|+.+..... .++|.+|.++|||+++ | |++||+|++||+ +++.+++..+++++|++..+.+|.+.+
T Consensus 245 GIGa~l~~~~~------~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV 317 (667)
T PRK11186 245 GIGAVLQMDDD------YTVINSLVAGGPAAKSKK-LSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEI 317 (667)
T ss_pred EEEEEEEEeCC------eEEEEEccCCChHHHhCC-CCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEE
Confidence 45666654322 3889999999999998 6 999999999994 466789999999999999899999999
Q ss_pred Eec
Q psy6405 213 ALG 215 (548)
Q Consensus 213 ~Ri 215 (548)
.|.
T Consensus 318 ~r~ 320 (667)
T PRK11186 318 LPA 320 (667)
T ss_pred EeC
Confidence 873
No 68
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.34 E-value=0.003 Score=59.08 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCeEEEEEeeCC---CCCceEEEEEeCCC--CCCCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeccCccHHHHHH
Q psy6405 48 TSEVSVVVLHRDL---PGNSVGITLAGGSD--YESKEITVHKVISGTPADRDGRLQK-GDRILSINGKSMKGLTHKESLA 121 (548)
Q Consensus 48 ~~d~~tV~L~Kd~---~~~GLGfsIagG~d--~~~~gVvVs~V~pGSPAaqAGrLq~-GDrILaINGv~V~~~s~~~aV~ 121 (548)
....|.|.+.... ..+.+|+++....- .......|..|.|+|||++|| |++ .|.|+.+++..+.+.+......
T Consensus 8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l~~~v 86 (138)
T PF04495_consen 8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDLFELV 86 (138)
T ss_dssp TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHHHHHH
T ss_pred CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHHHHHH
Confidence 3556777776532 24678888875332 234678999999999999999 998 6999999999888777666555
Q ss_pred HhhCCCCeEEEEEecC--cceeEEEecC
Q psy6405 122 ILKRGPPVEITLIKDG--AGLGFSLEGG 147 (548)
Q Consensus 122 ~lk~g~~VtVtV~RdG--kgLGfSItgg 147 (548)
....+.++.+.|.... ....++|.+.
T Consensus 87 ~~~~~~~l~L~Vyns~~~~vR~V~i~P~ 114 (138)
T PF04495_consen 87 EANENKPLQLYVYNSKTDSVREVTITPS 114 (138)
T ss_dssp HHTTTS-EEEEEEETTTTCEEEEEE---
T ss_pred HHcCCCcEEEEEEECCCCeEEEEEEEcC
Confidence 5566778888887533 2345566543
No 69
>KOG3129|consensus
Probab=97.34 E-value=0.00054 Score=67.96 Aligned_cols=69 Identities=28% Similarity=0.400 Sum_probs=56.9
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH---HHHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE---SLAILKRGPPVEITLIKDGAGLGFSLEGGK 148 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~---aV~~lk~g~~VtVtV~RdGkgLGfSItgg~ 148 (548)
-++|.+|.|+|||+.+| |++||.|+++..+.--++.... ++.....+..+.|+|.|.+....+++++.+
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~ 211 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK 211 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc
Confidence 57899999999999999 9999999999887766655433 233444678899999999999999998765
No 70
>KOG3606|consensus
Probab=97.29 E-value=0.00063 Score=69.74 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=66.0
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDY--------ESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL 123 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~--------~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l 123 (548)
+.|.|.|-+...+|||-|.-|... .-+++||+..+|||.|+..|.|-+.|+|++|||+.|.+.+..++...+
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 567777776778999998866432 136899999999999999999999999999999999999988876444
Q ss_pred h-CCCCeEEEEE
Q psy6405 124 K-RGPPVEITLI 134 (548)
Q Consensus 124 k-~g~~VtVtV~ 134 (548)
. ....+.|||.
T Consensus 240 vANshNLIiTVk 251 (358)
T KOG3606|consen 240 VANSHNLIITVK 251 (358)
T ss_pred hhcccceEEEec
Confidence 3 3445666665
No 71
>KOG3542|consensus
Probab=97.24 E-value=0.00054 Score=77.00 Aligned_cols=84 Identities=29% Similarity=0.522 Sum_probs=73.2
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP 128 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~ 128 (548)
..++.|.++|......+-|.+.||.+. +.+++|..|.||+-|+++| |+-||+|++|||+..++.+...+...++....
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEk-GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnth 611 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEK-GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNTH 611 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccc-cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCce
Confidence 567899999866678999999999864 4689999999999999999 99999999999999999998888877777666
Q ss_pred eEEEEE
Q psy6405 129 VEITLI 134 (548)
Q Consensus 129 VtVtV~ 134 (548)
++++|.
T Consensus 612 LtltvK 617 (1283)
T KOG3542|consen 612 LTLTVK 617 (1283)
T ss_pred EEEEEe
Confidence 777764
No 72
>KOG0609|consensus
Probab=97.05 E-value=0.0031 Score=69.81 Aligned_cols=81 Identities=28% Similarity=0.519 Sum_probs=64.4
Q ss_pred CeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCC
Q psy6405 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPP 128 (548)
Q Consensus 50 d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~ 128 (548)
.++.|.+.|. .+..+|+++.-..+ ..++|..|..||.+++.|.|++||+|++|||+.+.+.+..+....++ ....
T Consensus 122 ~vriv~i~k~-~~eplG~Tik~~e~---~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~ 197 (542)
T KOG0609|consen 122 AVRIVRIVKN-TGEPLGATIRVEED---TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGS 197 (542)
T ss_pred eeEEEEEeec-CCCccceEEEeccC---CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCc
Confidence 3678888888 48999999995432 37999999999999999999999999999999999988777654443 2244
Q ss_pred eEEEEE
Q psy6405 129 VEITLI 134 (548)
Q Consensus 129 VtVtV~ 134 (548)
+++.|.
T Consensus 198 itfkii 203 (542)
T KOG0609|consen 198 ITFKII 203 (542)
T ss_pred EEEEEc
Confidence 555554
No 73
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.02 E-value=0.0026 Score=65.83 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=51.4
Q ss_pred EEEcCCC---hhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405 83 HKVISGT---PADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE 145 (548)
Q Consensus 83 s~V~pGS---PAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt 145 (548)
-.+.||. ...++| |++||.+++|||.++.+..... ++..++....++|+|.|+|....+.+.
T Consensus 209 Yrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~ 274 (276)
T PRK09681 209 YAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIA 274 (276)
T ss_pred EEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEE
Confidence 4566653 467899 9999999999999999887655 667788899999999999998877764
No 74
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.002 Score=67.54 Aligned_cols=70 Identities=27% Similarity=0.489 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEecCC
Q psy6405 78 KEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLEGGK 148 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSItgg~ 148 (548)
.+++|..|.++|||+++| ++.||.|+++||.++.+..... .+.....+..+.+++.|+++...+.++...
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~ 340 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD 340 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence 468999999999999999 9999999999999999887666 445555788999999999888888777554
No 75
>KOG4371|consensus
Probab=96.98 E-value=0.0027 Score=74.40 Aligned_cols=154 Identities=24% Similarity=0.413 Sum_probs=109.1
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCC
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGP 127 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~ 127 (548)
.++..+++.|. -+.||+.++. ..+.+.|+...-.+.-..-. |++||.++.+||+.+...-+..++..++ .++
T Consensus 1146 p~~i~~~~~r~--~~~l~~~~a~----~~~~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~ 1218 (1332)
T KOG4371|consen 1146 PRVIDVELDRN--EGSLGVQIAS----LSGRVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGD 1218 (1332)
T ss_pred CccccccCCCC--CCCCCceecc----CccceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCc
Confidence 34455666666 3889999883 23567777766655555566 9999999999999998888877765555 355
Q ss_pred CeEEEEEecCc----------------------------ceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCE
Q psy6405 128 PVEITLIKDGA----------------------------GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE 179 (548)
Q Consensus 128 ~VtVtV~RdGk----------------------------gLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDr 179 (548)
.+.|-|.|... ++|+++.... + ..++++..+...+.|...|.+++||+
T Consensus 1219 ~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~--~--s~~~~~~~~~~~~~a~~~~~~r~g~~ 1294 (1332)
T KOG4371|consen 1219 RVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRT--M--SDGIFIRNIAQDSAASSEGTLRVGDR 1294 (1332)
T ss_pred eEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccC--c--CCceeeecccccccccccccccccce
Confidence 67777877532 1111111111 1 13788998888888988899999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405 180 ILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL 214 (548)
Q Consensus 180 ILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R 214 (548)
+...+|.++.+++..+..+.++-. .+++.+++.|
T Consensus 1295 ~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1295 LVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTR 1328 (1332)
T ss_pred eeccCCccCCCCChHHHHHHhhhc-cCchhheehh
Confidence 999999999999976666666533 4566777655
No 76
>KOG1421|consensus
Probab=96.96 E-value=0.0059 Score=69.19 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=90.4
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCC-------
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP------- 151 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~------- 151 (548)
-.+|+.|.+..+- - |..||.|++|||+.+..+++..-+. .+...|.|+|....++|..-....
T Consensus 772 l~~ishv~~~~~k---i-l~~gdiilsvngk~itr~~dl~d~~------eid~~ilrdg~~~~ikipt~p~~et~r~vi~ 841 (955)
T KOG1421|consen 772 LYVISHVRPLLHK---I-LGVGDIILSVNGKMITRLSDLHDFE------EIDAVILRDGIEMEIKIPTYPEYETSRAVIW 841 (955)
T ss_pred EEEEEeeccCccc---c-cccccEEEEecCeEEeeehhhhhhh------hhheeeeecCcEEEEEeccccccccceEEEE
Confidence 4577888886653 2 7799999999999999888776332 456677788877777664321110
Q ss_pred ----C-------------CCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405 152 ----F-------------GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL 214 (548)
Q Consensus 152 ----l-------------G~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R 214 (548)
+ -..+++|.+.-.+|||-+ + |..-..|.+|||+.+.++. ++..+++..+.....-+...
T Consensus 842 ~gailq~ph~av~~q~edlp~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~ld--df~~~~~~ipdnsyv~v~~m 917 (955)
T KOG1421|consen 842 MGAILQPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNTLD--DFYHMLLEIPDNSYVQVKQM 917 (955)
T ss_pred EeccccCchHHHHHHHhccCCceEEeecccCChhHh-h-cchheeEEEecccccCcHH--HHHHHHhhCCCCceEEEEEe
Confidence 0 014899999999999999 6 9999999999999988765 99999998876654444433
No 77
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.96 E-value=0.0038 Score=54.28 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=46.7
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEcCC--------ChhhhcCCCC--CCCEEEEECCeeccCccHHHHHHHhhCCCCeEEEE
Q psy6405 64 SVGITLAGGSDYESKEITVHKVISG--------TPADRDGRLQ--KGDRILSINGKSMKGLTHKESLAILKRGPPVEITL 133 (548)
Q Consensus 64 GLGfsIagG~d~~~~gVvVs~V~pG--------SPAaqAGrLq--~GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV 133 (548)
.||..++.. +++..|..|.++ ||-.+.| +. +||.|++|||+++..-........-+.+..+.|+|
T Consensus 2 ~LGAd~~~~----~~~y~I~~I~~gd~~~~~~~sPL~~pG-v~v~~GD~I~aInG~~v~~~~~~~~lL~~~agk~V~Ltv 76 (88)
T PF14685_consen 2 LLGADFSYD----NGGYRIARIYPGDPWNPNARSPLAQPG-VDVREGDYILAINGQPVTADANPYRLLEGKAGKQVLLTV 76 (88)
T ss_dssp B-SEEEEEE----TTEEEEEEE-BS-TTSSS-B-GGGGGS-----TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEE
T ss_pred ccceEEEEc----CCEEEEEEEeCCCCCCccccCCccCCC-CCCCCCCEEEEECCEECCCCCCHHHHhcccCCCEEEEEE
Confidence 466666643 357888888886 6766766 55 99999999999998776666666667788899999
Q ss_pred EecCc
Q psy6405 134 IKDGA 138 (548)
Q Consensus 134 ~RdGk 138 (548)
.+.+.
T Consensus 77 ~~~~~ 81 (88)
T PF14685_consen 77 NRKPG 81 (88)
T ss_dssp E-STT
T ss_pred ecCCC
Confidence 98654
No 78
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=96.95 E-value=0.0016 Score=66.57 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=52.6
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEecccc
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDL 218 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDL 218 (548)
.|+.|..+.++++|+++| |+.||+|++|||.++.++. ++.+++... ++..+++.+.|....
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~--~~~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPE--QAFQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCeEEEEEEECCEE
Confidence 368999999999999999 9999999999999999876 777888775 456889999997653
No 79
>KOG3938|consensus
Probab=96.85 E-value=0.0035 Score=64.26 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred ChhhhcCCCCCCCEEE-EECCeeccCc-------cHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEE
Q psy6405 89 TPADRDGRLQKGDRIL-SINGKSMKGL-------THKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVK 160 (548)
Q Consensus 89 SPAaqAGrLq~GDrIL-aINGv~V~~~-------s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~Vs 160 (548)
+.|+.=+ +.+-|+|. .+|...+.-. ...+.+.....|....|.|.++...+|++|+..-. .-.+|+
T Consensus 81 kIAe~F~-Is~~dIlfcTlNshKvDM~~llgGqigleDfiFAHvkGq~kEv~v~KsedalGlTITDNG~-----GyAFIK 154 (334)
T KOG3938|consen 81 KIAEAFD-ISPDDILFCTLNSHKVDMKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDALGLTITDNGA-----GYAFIK 154 (334)
T ss_pred HHHHHhc-CCccceEEEecCCCcccHHHHhcCccChhhhhhhhhcCcceeEEEEecccccceEEeeCCc-----ceeeeE
Confidence 4565555 77778764 4566555311 12233455567889999999999999999986422 237899
Q ss_pred EeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405 161 KIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG 206 (548)
Q Consensus 161 sV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~ 206 (548)
.|.++|.-++...+.+||.|-+|||.++.++.|.+|..+|+..+..
T Consensus 155 rIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg 200 (334)
T KOG3938|consen 155 RIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG 200 (334)
T ss_pred eecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence 9999999999888999999999999999999999999999998654
No 80
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.79 E-value=0.0018 Score=68.62 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=50.9
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD 217 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD 217 (548)
.+++|..|.++|||+++| |++||+|++|||.++.++. ++.+.++. ..+..+.+.+.|...
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAE--ELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence 378999999999999999 9999999999999999876 67777765 456778888888654
No 81
>PRK10898 serine endoprotease; Provisional
Probab=96.73 E-value=0.0023 Score=67.93 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHH-cCCCceeEEEEeccc
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK-LNDGTIQDIKALGYD 217 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs-~~g~~V~LlV~RilD 217 (548)
.++.|..|.++|||+++| |+.||+|++|||.++.++. ++.+.+.. ..+..+.+.+.|...
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~--~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISAL--ETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECCE
Confidence 478999999999999999 9999999999999998865 56666655 456778888888654
No 82
>KOG3606|consensus
Probab=96.66 E-value=0.008 Score=61.86 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=51.2
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA 213 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~ 213 (548)
.+|+|+.+.+||.|+..|-|.+.|.|++|||+.|.+.+.+++.+|+-+. ...+.++|.
T Consensus 194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVk 251 (358)
T KOG3606|consen 194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVK 251 (358)
T ss_pred CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEec
Confidence 4899999999999999998899999999999999999999999999876 445555554
No 83
>KOG3552|consensus
Probab=96.66 E-value=0.0029 Score=73.43 Aligned_cols=77 Identities=29% Similarity=0.561 Sum_probs=62.4
Q ss_pred CeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc
Q psy6405 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT 207 (548)
Q Consensus 128 ~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~ 207 (548)
+..|.+.|. ..+||-+..+ .+++|..|.+|||+. |.|++||+|+.|||.++.....+.|++++|++ ...
T Consensus 56 pr~vq~~r~-~~lGFgfvag-------rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRac-e~s 124 (1298)
T KOG3552|consen 56 PRQVQLQRN-ASLGFGFVAG-------RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRAC-ESS 124 (1298)
T ss_pred chhhhhhcc-ccccceeecC-------CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHH-hhh
Confidence 455656654 4466666555 269999999999987 66999999999999999999999999999999 557
Q ss_pred eeEEEEec
Q psy6405 208 IQDIKALG 215 (548)
Q Consensus 208 V~LlV~Ri 215 (548)
|.++|.+.
T Consensus 125 v~ltV~qP 132 (1298)
T KOG3552|consen 125 VNLTVCQP 132 (1298)
T ss_pred cceEEecc
Confidence 78887774
No 84
>KOG3542|consensus
Probab=96.58 E-value=0.0028 Score=71.54 Aligned_cols=82 Identities=29% Similarity=0.446 Sum_probs=68.2
Q ss_pred CCeEEEEEe--cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405 127 PPVEITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN 204 (548)
Q Consensus 127 ~~VtVtV~R--dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~ 204 (548)
.+..+++.| ....+.|.+.++.+..+ +|+|..|.+++.|++.| ++.||+|++|||++..+.+...++++|+..
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkGf---gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn- 609 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKGF---GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN- 609 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccccc---eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-
Confidence 345666665 44568899999887765 49999999999999999 999999999999999999999999999875
Q ss_pred CCceeEEEEe
Q psy6405 205 DGTIQDIKAL 214 (548)
Q Consensus 205 g~~V~LlV~R 214 (548)
..+.+++.-
T Consensus 610 -thLtltvKt 618 (1283)
T KOG3542|consen 610 -THLTLTVKT 618 (1283)
T ss_pred -ceEEEEEec
Confidence 556666654
No 85
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.52 E-value=0.0092 Score=64.74 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=56.5
Q ss_pred EEEecCcceeEEEecCCCCCCCCCCeEEEEec--------cCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405 132 TLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIF--------TGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203 (548)
Q Consensus 132 tV~RdGkgLGfSItgg~~s~lG~~gI~VssV~--------pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~ 203 (548)
.|.-.|..+|+.+... ++.|.... ..|||+++| |++||+|++|||.++.++. ++.++++..
T Consensus 90 ~v~pgG~~iGI~l~t~--------GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~--DL~~iL~~~ 158 (402)
T TIGR02860 90 KVIPGGQSIGVKLNTK--------GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMD--DLANLINKA 158 (402)
T ss_pred EEEECCEEEEEEEecC--------EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhC
Confidence 3444666777777432 34443321 258999999 9999999999999999877 888999888
Q ss_pred CCCceeEEEEeccc
Q psy6405 204 NDGTIQDIKALGYD 217 (548)
Q Consensus 204 ~g~~V~LlV~RilD 217 (548)
.+..+.+.+.|...
T Consensus 159 ~g~~V~LtV~R~Ge 172 (402)
T TIGR02860 159 GGEKLTLTIERGGK 172 (402)
T ss_pred CCCeEEEEEEECCE
Confidence 77788898888654
No 86
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.48 E-value=0.012 Score=55.08 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=51.6
Q ss_pred cceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCC-CCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEe
Q psy6405 138 AGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA-GDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKAL 214 (548)
Q Consensus 138 kgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~-GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~R 214 (548)
..+|++|.-.........+..|..|.++|||+++| |++ .|.|+.+++..+.+.+ ++.+.+++..+.++.+.|-.
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~--~l~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDED--DLFELVEANENKPLQLYVYN 100 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STC--HHHHHHHHTTTS-EEEEEEE
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHH--HHHHHHHHcCCCcEEEEEEE
Confidence 45788885433221122468899999999999999 998 6999999998888766 88899998888888888854
No 87
>KOG3834|consensus
Probab=96.46 E-value=0.017 Score=62.74 Aligned_cols=137 Identities=22% Similarity=0.219 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEec-----------------Ccc
Q psy6405 78 KEITVHKVISGTPADRDGRLQK-GDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKD-----------------GAG 139 (548)
Q Consensus 78 ~gVvVs~V~pGSPAaqAGrLq~-GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~Rd-----------------Gkg 139 (548)
.+..|-.|.++|+|+++| |.+ -|-|++|||..+..-..............++++|.-. |+-
T Consensus 15 eg~hvlkVqedSpa~~ag-lepffdFIvSI~g~rL~~dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggql 93 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAG-LEPFFDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQL 93 (462)
T ss_pred eeEEEEEeecCChHHhcC-cchhhhhhheeCcccccCchHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccc
Confidence 467788899999999999 555 8999999999987543322111111222366665421 111
Q ss_pred eeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCC-CCCEEEEE-CCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccc
Q psy6405 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLK-AGDEILTI-NNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYD 217 (548)
Q Consensus 140 LGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq-~GDrILaV-NGvsV~~~t~~EavelLrs~~g~~V~LlV~RilD 217 (548)
+|++|.=-.....-.....|-+|.+.|||+.+| |+ .+|.|+-+ +.+. -+.++...+|....++.+.+.| ...|
T Consensus 94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyV-YN~D 168 (462)
T KOG3834|consen 94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYV-YNHD 168 (462)
T ss_pred cceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCCCcceeE-eecC
Confidence 444442111100001235688899999999999 76 88999777 4432 2345777888887677766655 3334
Q ss_pred cCC
Q psy6405 218 LNS 220 (548)
Q Consensus 218 Lr~ 220 (548)
.+.
T Consensus 169 ~d~ 171 (462)
T KOG3834|consen 169 TDS 171 (462)
T ss_pred CCc
Confidence 333
No 88
>KOG0609|consensus
Probab=96.44 E-value=0.009 Score=66.23 Aligned_cols=78 Identities=32% Similarity=0.528 Sum_probs=65.0
Q ss_pred EEEEEec-CcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCce
Q psy6405 130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208 (548)
Q Consensus 130 tVtV~Rd-GkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V 208 (548)
.|.+.+. +..+|.+++..... .++|..|..||.+++.|.|.+||.|++|||+++.+.+..++.++++.+. +.+
T Consensus 125 iv~i~k~~~eplG~Tik~~e~~-----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~i 198 (542)
T KOG0609|consen 125 IVRIVKNTGEPLGATIRVEEDT-----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GSI 198 (542)
T ss_pred EEEEeecCCCccceEEEeccCC-----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-CcE
Confidence 3445554 78899999875543 3899999999999999999999999999999999999999999999985 566
Q ss_pred eEEEE
Q psy6405 209 QDIKA 213 (548)
Q Consensus 209 ~LlV~ 213 (548)
++.+.
T Consensus 199 tfkii 203 (542)
T KOG0609|consen 199 TFKII 203 (542)
T ss_pred EEEEc
Confidence 65553
No 89
>KOG3605|consensus
Probab=96.31 E-value=0.0065 Score=68.49 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=64.7
Q ss_pred eEEEEEe-cCcceeEEEec-CCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCC
Q psy6405 129 VEITLIK-DGAGLGFSLEG-GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG 206 (548)
Q Consensus 129 VtVtV~R-dGkgLGfSItg-g~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~ 206 (548)
..|.|.| .|+.+|+.|.- +..+.+ ..++|..+..+|||++.|.|..||+|++|||.++.++........||..+..
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 4555554 67889988853 333322 2467888999999999999999999999999999999999999999988653
Q ss_pred -ceeEEEEe
Q psy6405 207 -TIQDIKAL 214 (548)
Q Consensus 207 -~V~LlV~R 214 (548)
.|.+.|.+
T Consensus 725 T~VkltiV~ 733 (829)
T KOG3605|consen 725 TAVKLNIVS 733 (829)
T ss_pred ceEEEEEec
Confidence 45555533
No 90
>KOG3938|consensus
Probab=96.19 E-value=0.0087 Score=61.45 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=68.5
Q ss_pred CCeEEEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHh---hC
Q psy6405 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAIL---KR 125 (548)
Q Consensus 49 ~d~~tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~l---k~ 125 (548)
+....|.+.|+ ...||++|.- ...+-.+|..|.++|..++.-.+++||.|-+|||.++.++.|.++...+ +.
T Consensus 125 Gq~kEv~v~Ks--edalGlTITD---NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r 199 (334)
T KOG3938|consen 125 GQAKEVEVVKS--EDALGLTITD---NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR 199 (334)
T ss_pred CcceeEEEEec--ccccceEEee---CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence 45578888888 5889999982 3345789999999999988777999999999999999999999976544 45
Q ss_pred CCCeEEEEEecCcc
Q psy6405 126 GPPVEITLIKDGAG 139 (548)
Q Consensus 126 g~~VtVtV~RdGkg 139 (548)
+.+.++.+.-+...
T Consensus 200 ge~ftlrLiePk~a 213 (334)
T KOG3938|consen 200 GETFTLRLIEPKSA 213 (334)
T ss_pred CCeeEEEeeccccc
Confidence 66677776644333
No 91
>KOG4407|consensus
Probab=96.12 E-value=0.0061 Score=72.76 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=90.8
Q ss_pred EEEEEeeCCCCCceEEEEEeCCCCC------------------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEEC
Q psy6405 52 SVVVLHRDLPGNSVGITLAGGSDYE------------------------SKEITVHKVISGTPADRDGRLQKGDRILSIN 107 (548)
Q Consensus 52 ~tV~L~Kd~~~~GLGfsIagG~d~~------------------------~~gVvVs~V~pGSPAaqAGrLq~GDrILaIN 107 (548)
..+++.|+ +..||||++..-.-++ ...+++..+..++++..+| +..||.|..|+
T Consensus 47 ~~~V~~rR-~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v~~it 124 (1973)
T KOG4407|consen 47 KLIVIRRR-PNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGVAGIT 124 (1973)
T ss_pred ceEEEEec-CCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccceeeec
Confidence 34445555 4899999986322111 0134566777889999999 99999999999
Q ss_pred CeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEE
Q psy6405 108 GKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187 (548)
Q Consensus 108 Gv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvs 187 (548)
|..+...+... ...++. .+ .++|.+|.+.++|.-+- |+.||+++.||..+
T Consensus 125 G~e~~~~TS~~-~~~vk~----------------------~e------T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~ 174 (1973)
T KOG4407|consen 125 GLEPTSPTSLP-PYQVKA----------------------ME------TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQP 174 (1973)
T ss_pred ccccCCCcccc-HHHHhh----------------------hh------hhhhhhhccCChhHHHh-hhccceeEEeecCc
Confidence 99887765221 111111 01 27788899999999998 99999999999999
Q ss_pred cCCCCHHHHHHHHHHcCC
Q psy6405 188 VTEMSRIEAWSLLKKLND 205 (548)
Q Consensus 188 V~~~t~~EavelLrs~~g 205 (548)
+.++...+++.+++..+.
T Consensus 175 ~A~i~~s~~~S~~~qt~~ 192 (1973)
T KOG4407|consen 175 IAGIAYSTIVSMIKQTPA 192 (1973)
T ss_pred ccchhhhhhhhhhccCCC
Confidence 999999999999988744
No 92
>KOG1320|consensus
Probab=95.68 E-value=0.028 Score=62.14 Aligned_cols=131 Identities=18% Similarity=0.295 Sum_probs=84.1
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeecc----CccH---HHHHHHhhCCCCeEEEEEecCcceeEEEecCCC--
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMK----GLTH---KESLAILKRGPPVEITLIKDGAGLGFSLEGGKD-- 149 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~----~~s~---~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~-- 149 (548)
++.|..+.+-+.|... ++.||.|+.++|+.|- ..+. ..-+....+++.+.+.|.|.+ .+..++++...
T Consensus 288 g~~i~~~~qtd~ai~~--~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~-e~~~~lr~~~~~~ 364 (473)
T KOG1320|consen 288 GVLISKINQTDAAINP--GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLG-EFQISLRPVKPLV 364 (473)
T ss_pred ceeeeeecccchhhhc--ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhh-hhceeeccccCcc
Confidence 4888999998888765 6999999999998873 1110 001112223444444444433 22222211110
Q ss_pred ------------------------CC----CCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Q psy6405 150 ------------------------SP----FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201 (548)
Q Consensus 150 ------------------------s~----lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLr 201 (548)
.. ...+.+.|..|.+++++...+ +..||+|.+|||+++.+.. ++.++++
T Consensus 365 p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~--~l~~~i~ 441 (473)
T KOG1320|consen 365 PVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLK--HLYELIE 441 (473)
T ss_pred cccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCccccc-ccCCCEEEEECCEEeechH--HHHHHHH
Confidence 00 011357888999999999999 9999999999999999987 6779998
Q ss_pred HcC-CCceeEEEEec
Q psy6405 202 KLN-DGTIQDIKALG 215 (548)
Q Consensus 202 s~~-g~~V~LlV~Ri 215 (548)
.+. +..+.++..+.
T Consensus 442 ~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 442 ECSTEDKVAVLDRRS 456 (473)
T ss_pred hcCcCceEEEEEecC
Confidence 873 23444444443
No 93
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.18 E-value=0.025 Score=61.90 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=97.1
Q ss_pred EEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEE-eccccCCCCCCCcccCCcCCccc-
Q psy6405 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKA-LGYDLNSLGYPRTQDLNALGYPK- 236 (548)
Q Consensus 159 VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~-RilDLr~~~~p~~~s~~~Ig~Pk- 236 (548)
|..|.++|+|+++| |++||+|++|||.++.+|. ++...+. +..+.+.+. |........+.. .....+|.-.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~--D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~-~~dedlG~~f~ 74 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLI--DYQFLCA---DEELELEVLDANGESHQIEIEK-DLDEDLGLEFT 74 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHhc---CCcEEEEEEcCCCeEEEEEEec-CCCCCCcEEec
Confidence 56789999999999 9999999999999999887 5544442 345666664 333221111111 1111222111
Q ss_pred ccc----------------------CCcceeeeccchhhhHHhhcccccccCCCcccccCCccC--------CCcccCcc
Q psy6405 237 TRD----------------------LNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEY--------PKTQDLNA 286 (548)
Q Consensus 237 ~~~----------------------~n~~~yI~~rdf~~l~~~~~r~i~s~~~~~~~~~~~~~~--------~~~~~~~~ 286 (548)
... .+..-|++..| ++ .||=|--|.-||-+-= =+-.-+|.
T Consensus 75 ~~~~d~~~~C~N~C~FCFidQlP~gmR~sLY~KDDD--yR--------LSFL~GnyiTLTNl~~~d~~RI~~~~lspl~i 144 (433)
T TIGR03279 75 TALFDGLIQCNNRCPFCFIDQQPPGKRESLYLKDDD--YR--------LSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYV 144 (433)
T ss_pred cccCCcccccCCcCceEeccCCCCCCcCcceeccCc--ch--------hhhhccceeeecCCCHHHHHHHHHcCCCCEEE
Confidence 000 00111222221 00 1222333333333210 01112333
Q ss_pred cCCCCcccCc--ccCCCCccchHHHHHHhhhhccccccC--CCCCcccchhhhHHhhhhccCCCccCCcccC---CCCcc
Q psy6405 287 LGHPKTQDLN--ALGHPKTQDLNALIQDLNALGYDLNAL--GHPKTQDLNALGYKILNALEYPKSQDLNALG---YPKTQ 359 (548)
Q Consensus 287 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 359 (548)
-=|--..++. -+|.|...+.-..+..|.+.|.++++- =-|---|=..|--.|. ||-++| ||.-+
T Consensus 145 SVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~---------dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 145 SVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR---------DLAQFHDGDWPTVL 215 (433)
T ss_pred EEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH---------HHHhhcccCCCcee
Confidence 3344444443 478898889989999999999998862 3455555555554442 344443 66666
Q ss_pred cccccccCCc
Q psy6405 360 DLNVLEYPKT 369 (548)
Q Consensus 360 ~~~~~~~~~~ 369 (548)
.+-|.-.--|
T Consensus 216 S~avVPVGlT 225 (433)
T TIGR03279 216 SVAVVPVGLT 225 (433)
T ss_pred EEEEEccccc
Confidence 6666544333
No 94
>KOG3129|consensus
Probab=95.10 E-value=0.043 Score=54.80 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=48.9
Q ss_pred eEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHHcCCCceeEEEEecccc
Q psy6405 157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS-RIEAWSLLKKLNDGTIQDIKALGYDL 218 (548)
Q Consensus 157 I~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t-~~EavelLrs~~g~~V~LlV~RilDL 218 (548)
.+|.+|.++|||+.+| |+.||.|+.+..+.-.++. ...+....+...+..+.+.+.|....
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 6799999999999999 9999999999988766665 44555555666677888888887653
No 95
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.68 E-value=0.12 Score=54.50 Aligned_cols=55 Identities=25% Similarity=0.440 Sum_probs=47.9
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEe
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIK 135 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~R 135 (548)
+|++..|..+||+ .|.|+.||.|++|||+++....... .+...+.|+.++|+..|
T Consensus 131 gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r 186 (342)
T COG3480 131 GVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYER 186 (342)
T ss_pred eEEEEEccCCcch--hceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEe
Confidence 7899999999998 5779999999999999998876665 45667789999999997
No 96
>KOG0606|consensus
Probab=94.49 E-value=0.071 Score=63.65 Aligned_cols=79 Identities=33% Similarity=0.533 Sum_probs=58.5
Q ss_pred EEEEeeCCCCCceEEEEE------eCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-C
Q psy6405 53 VVVLHRDLPGNSVGITLA------GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-R 125 (548)
Q Consensus 53 tV~L~Kd~~~~GLGfsIa------gG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~ 125 (548)
.+.+.+. ..++||++. |+.+.-...-.|..|.++|||..+| +++||.|+.|||.+|.+..|.+++..+. .
T Consensus 629 pI~i~~~--~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~ 705 (1205)
T KOG0606|consen 629 PITIHFS--GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS 705 (1205)
T ss_pred ceeeecc--ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc
Confidence 3666666 678887653 2222112235789999999999999 9999999999999999999999875554 4
Q ss_pred CCCeEEEEE
Q psy6405 126 GPPVEITLI 134 (548)
Q Consensus 126 g~~VtVtV~ 134 (548)
+..+.+.+.
T Consensus 706 gn~v~~~tt 714 (1205)
T KOG0606|consen 706 GNKVTLRTT 714 (1205)
T ss_pred CCeeEEEee
Confidence 555555543
No 97
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.47 E-value=0.19 Score=51.29 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=47.3
Q ss_pred cCCChhhhcCCCCCCCEEEEECCeeccCccHHH-HHHHhhCCCCeEEEEEecCcceeEEEe
Q psy6405 86 ISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLAILKRGPPVEITLIKDGAGLGFSLE 145 (548)
Q Consensus 86 ~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~-aV~~lk~g~~VtVtV~RdGkgLGfSIt 145 (548)
.+++..+..| |+.||.-++||+.++++-.... .++.+...+...++|.|+|....+.|.
T Consensus 215 kd~slF~~sg-lq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV~ 274 (275)
T COG3031 215 KDGSLFYKSG-LQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINVR 274 (275)
T ss_pred CCcchhhhhc-CCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCccceeeec
Confidence 3456778899 9999999999999998776655 345666778899999999987766653
No 98
>KOG0606|consensus
Probab=94.08 E-value=0.084 Score=63.04 Aligned_cols=78 Identities=28% Similarity=0.329 Sum_probs=59.9
Q ss_pred EEEEEecCcceeEEEecCC-----CCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC
Q psy6405 130 EITLIKDGAGLGFSLEGGK-----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN 204 (548)
Q Consensus 130 tVtV~RdGkgLGfSItgg~-----~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~ 204 (548)
.|++.+.++++||++..-+ .. .-..-..|.+|.++|||..+| ++.||.|+.|||..|.+..|.++++++-+.
T Consensus 629 pI~i~~~~~~yGft~~airVy~Gd~d-~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~- 705 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAIRVYMGDKD-VYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKS- 705 (1205)
T ss_pred ceeeeccccccCceeeeEEEecCCcc-cceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhc-
Confidence 3777888888998774321 11 111135688899999999999 999999999999999999999999999865
Q ss_pred CCceeE
Q psy6405 205 DGTIQD 210 (548)
Q Consensus 205 g~~V~L 210 (548)
+..+.+
T Consensus 706 gn~v~~ 711 (1205)
T KOG0606|consen 706 GNKVTL 711 (1205)
T ss_pred CCeeEE
Confidence 344443
No 99
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=93.92 E-value=0.18 Score=43.86 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=39.9
Q ss_pred eEEEEeccC--------ChhhhcC-CCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEecc
Q psy6405 157 LTVKKIFTG--------GCAEKNG-QLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGY 216 (548)
Q Consensus 157 I~VssV~pg--------SpAekaG-rLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ril 216 (548)
..|.+|.++ ||-.+.| .++.||.|++|||+++..-. ....+|....+..|.|++.+..
T Consensus 14 y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 14 YRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp EEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-ST
T ss_pred EEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCC
Confidence 667777665 5666666 14699999999999999876 6778898888889999988754
No 100
>KOG1738|consensus
Probab=93.57 E-value=0.11 Score=58.92 Aligned_cols=72 Identities=26% Similarity=0.491 Sum_probs=59.5
Q ss_pred CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC-eEEEEEe
Q psy6405 61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLIK 135 (548)
Q Consensus 61 ~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~-VtVtV~R 135 (548)
+..|+|+-|..-- ++..+|+.+.+++||...+.|..||+|+.||+..|.+|....++..+..... +.++|.+
T Consensus 211 p~eglg~~I~Ssy---dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 211 PSEGLGLYIDSSY---DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred cccCCceEEeeec---CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 5678999887543 3678999999999999999999999999999999999999988887775444 4455553
No 101
>KOG1320|consensus
Probab=93.54 E-value=0.2 Score=55.49 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=51.4
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHH-HHhhCCCCeEEEEEecCcceeEEEec
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESL-AILKRGPPVEITLIKDGAGLGFSLEG 146 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV-~~lk~g~~VtVtV~RdGkgLGfSItg 146 (548)
.++|..|.|++++...+ +.+||+|++|||++|.+..+..-+ .....++.+.+...|..+...+.|..
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~ 466 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILP 466 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecCccceeEEecc
Confidence 58899999999999999 999999999999999999887643 33333445656555666666666654
No 102
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=93.17 E-value=0.27 Score=51.10 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=40.8
Q ss_pred ChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcC-CCceeEEEEeccccC
Q psy6405 166 GCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN-DGTIQDIKALGYDLN 219 (548)
Q Consensus 166 SpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~-g~~V~LlV~RilDLr 219 (548)
..-.++| |+.||.+.+|||.++.... ++.++++... ..+++++|+|.+...
T Consensus 218 ~lF~~~G-Lq~GDva~sING~dL~D~~--qa~~l~~~L~~~tei~ltVeRdGq~~ 269 (276)
T PRK09681 218 SLFDASG-FKEGDIAIALNQQDFTDPR--AMIALMRQLPSMDSIQLTVLRKGARH 269 (276)
T ss_pred HHHHHcC-CCCCCEEEEeCCeeCCCHH--HHHHHHHHhccCCeEEEEEEECCEEE
Confidence 3457789 9999999999999998765 6667777654 468999999987644
No 103
>KOG3532|consensus
Probab=93.11 E-value=0.25 Score=56.55 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=46.2
Q ss_pred CCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHH
Q psy6405 61 PGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAI 122 (548)
Q Consensus 61 ~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~ 122 (548)
+...+|+.+... .+..|.|-.|.+++||.++. +.+||.+++|||++|........+..
T Consensus 384 ~s~~ig~vf~~~---~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q~~~~~~ 441 (1051)
T KOG3532|consen 384 VSSPIGLVFDKN---TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSERQATRFLQ 441 (1051)
T ss_pred ccCceeEEEecC---CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHHHHHHHHH
Confidence 466788877642 23578899999999999999 99999999999999987765554433
No 104
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.2 Score=52.60 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=50.0
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEeccccC
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALGYDLN 219 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~RilDLr 219 (548)
++.|..|.+++||+++| ++.||.|+++||..+.+.. +....+... .+..+.+.+.|....+
T Consensus 271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~--~l~~~v~~~~~g~~v~~~~~r~g~~~ 332 (347)
T COG0265 271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLS--DLVAAVASNRPGDEVALKLLRGGKER 332 (347)
T ss_pred ceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHH--HHHHHHhccCCCCEEEEEEEECCEEE
Confidence 57899999999999999 9999999999999999866 555666554 4678888888875433
No 105
>KOG1738|consensus
Probab=91.74 E-value=0.29 Score=55.56 Aligned_cols=77 Identities=26% Similarity=0.335 Sum_probs=61.2
Q ss_pred cCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEec
Q psy6405 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALG 215 (548)
Q Consensus 136 dGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~Ri 215 (548)
...++|+.|...-+. ..+|+.+.++|||.....|..||.|+.||+..+.+|++..++..++......+..++.|.
T Consensus 211 p~eglg~~I~Ssydg-----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYDG-----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred cccCCceEEeeecCC-----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence 344566666544333 477889999999999999999999999999999999999999999988766666666665
Q ss_pred cc
Q psy6405 216 YD 217 (548)
Q Consensus 216 lD 217 (548)
..
T Consensus 286 ~~ 287 (638)
T KOG1738|consen 286 VT 287 (638)
T ss_pred CC
Confidence 43
No 106
>KOG3532|consensus
Probab=91.38 E-value=0.52 Score=54.10 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=67.7
Q ss_pred CCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCCCCCCcccCCcCCc
Q psy6405 155 QPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSLGYPRTQDLNALGY 234 (548)
Q Consensus 155 ~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~~~p~~~s~~~Ig~ 234 (548)
+.+.|.+|.++++|.++. +++||++++|||++|.... ++.+.++...+ .+..++.|.++..+....--.
T Consensus 398 ~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~--q~~~~~~s~~~-~~~~l~~~~~~~~d~~~~~~~------- 466 (1051)
T KOG3532|consen 398 RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSER--QATRFLQSTTG-DLTVLVERSLDDIDEEESKGK------- 466 (1051)
T ss_pred eEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHH--HHHHHHHhccc-ceEEEEeecccchhhHHhccc-------
Confidence 467899999999999998 9999999999999998655 88899988844 455555555443222111111
Q ss_pred cccccCC-cceeeeccchhhhHHhhcccccccCCCccccc
Q psy6405 235 PKTRDLN-ALEYIKTRDLNALEYIKTRDLNALRYPKTQDL 273 (548)
Q Consensus 235 Pk~~~~n-~~~yI~~rdf~~l~~~~~r~i~s~~~~~~~~~ 273 (548)
++...+ ...|.+.-+.-+.+-..+.++.-+++.-|-+|
T Consensus 467 -k~~~~~~~~~~~~~~~~~~~~~~~t~~~t~~h~~v~~~l 505 (1051)
T KOG3532|consen 467 -KTNLLNSRIFFFRNFDDVCFQTILTKPLTTFHFSVFYFL 505 (1051)
T ss_pred -hhhhhccccccccCCchhhhhhhhcCCCCcceEEEEEee
Confidence 111111 22233333334445556677777766655555
No 107
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=89.89 E-value=0.39 Score=53.78 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=41.4
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCceeEEEEeccccCCC
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQDIKALGYDLNSL 221 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~V~LlV~RilDLr~~ 221 (548)
...|..|.++|||.++| |.+||+|++|||.+-. ..+-..+..+.+.+-+...++..
T Consensus 463 ~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~---------l~~~~~~d~i~v~~~~~~~L~e~ 518 (558)
T COG3975 463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQ---------LDRYKVNDKIQVHVFREGRLREF 518 (558)
T ss_pred eeEEEecCCCChhHhcc-CCCccEEEEEcCcccc---------ccccccccceEEEEccCCceEEe
Confidence 36899999999999999 9999999999999211 11122356677777776666544
No 108
>PF12812 PDZ_1: PDZ-like domain
Probab=89.73 E-value=1.8 Score=36.72 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=54.5
Q ss_pred CCEEEEECCeeccCccHHHHHHHhhCCCCeEEEEEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCE
Q psy6405 100 GDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE 179 (548)
Q Consensus 100 GDrILaINGv~V~~~s~~~aV~~lk~g~~VtVtV~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDr 179 (548)
-++.+.+.|-.+..+++..+.+...+- +.++.+...++++...| +..|-.
T Consensus 4 p~r~v~~~Ga~f~~Ls~q~aR~~~~~~-----------------------------~gv~v~~~~g~~~~~~~-i~~g~i 53 (78)
T PF12812_consen 4 PSRFVEVCGAVFHDLSYQQARQYGIPV-----------------------------GGVYVAVSGGSLAFAGG-ISKGFI 53 (78)
T ss_pred CCEEEEEcCeecccCCHHHHHHhCCCC-----------------------------CEEEEEecCCChhhhCC-CCCCeE
Confidence 477888888888888777654332110 23445567778887777 999999
Q ss_pred EEEECCEEcCCCCHHHHHHHHHHcCC
Q psy6405 180 ILTINNVPVTEMSRIEAWSLLKKLND 205 (548)
Q Consensus 180 ILaVNGvsV~~~t~~EavelLrs~~g 205 (548)
|.+||++++.+.. ++++.+++.+.
T Consensus 54 I~~Vn~kpt~~Ld--~f~~vvk~ipd 77 (78)
T PF12812_consen 54 ITSVNGKPTPDLD--DFIKVVKKIPD 77 (78)
T ss_pred EEeECCcCCcCHH--HHHHHHHhCCC
Confidence 9999999999866 88888887753
No 109
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=89.27 E-value=1.2 Score=46.85 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=45.0
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhhCCCC---eEEEEEe
Q psy6405 81 TVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP---VEITLIK 135 (548)
Q Consensus 81 vVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk~g~~---VtVtV~R 135 (548)
.+..+...|+|..+| +++||+|+++|+.++..+...........+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 445799999999999 99999999999999999987776555555555 6777777
No 110
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=87.52 E-value=1.5 Score=44.97 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=49.6
Q ss_pred EEecCcceeEEEecCCCCCCCCCCeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCC-CceeEE
Q psy6405 133 LIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND-GTIQDI 211 (548)
Q Consensus 133 V~RdGkgLGfSItgg~~s~lG~~gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g-~~V~Ll 211 (548)
|.|+++..|+.+.+++ +++.-+..| |+.||..++||+.+++.- +++..+++.... ..+.++
T Consensus 200 v~r~eki~Gyr~~pgk---------------d~slF~~sg-lq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlT 261 (275)
T COG3031 200 VIRNEKIEGYRFEPGK---------------DGSLFYKSG-LQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLT 261 (275)
T ss_pred EeeCCceEEEEecCCC---------------Ccchhhhhc-CCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEE
Confidence 3455666666666554 455667778 999999999999988864 477777777643 467888
Q ss_pred EEeccccC
Q psy6405 212 KALGYDLN 219 (548)
Q Consensus 212 V~RilDLr 219 (548)
+.|.+..+
T Consensus 262 v~R~G~rh 269 (275)
T COG3031 262 VIRRGKRH 269 (275)
T ss_pred EEecCccc
Confidence 88876544
No 111
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=85.49 E-value=1.5 Score=46.63 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc-CCCceeEEEEec
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL-NDGTIQDIKALG 215 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~-~g~~V~LlV~Ri 215 (548)
++++..+..++++.. .|..||.|++|||.++.+.. ++.+.+++. .+.+|++...|.
T Consensus 131 gvyv~~v~~~~~~~g--kl~~gD~i~avdg~~f~s~~--e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 131 GVYVLSVIDNSPFKG--KLEAGDTIIAVDGEPFTSSD--ELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred eEEEEEccCCcchhc--eeccCCeEEeeCCeecCCHH--HHHHHHhccCCCCeEEEEEEec
Confidence 588999999998864 49999999999999998755 888888765 478899998874
No 112
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=80.57 E-value=5.6 Score=39.28 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=52.1
Q ss_pred hhccHHHHHHhhhccccccccCCCccCCCC-CCCCeEEEEEeeCCCC------CceEEEEEeCCCCCCCCeEEEEEcCCC
Q psy6405 17 SLISQQELQQLIDESNQSLDEGGCPSLLIP-GTSEVSVVVLHRDLPG------NSVGITLAGGSDYESKEITVHKVISGT 89 (548)
Q Consensus 17 Slis~~yv~~~ieev~~~~~~dgai~gml~-~~~d~~tV~L~Kd~~~------~GLGfsIagG~d~~~~gVvVs~V~pGS 89 (548)
..+....+.+..++...+....--+.|.-- +....+++.+.-.+.. ...|+++.. .++.+.|..|..||
T Consensus 58 ~~~p~~~~~~~~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~----e~~~~~Vd~v~fgS 133 (183)
T PF11874_consen 58 EEVPPSELVQVAEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLME----EGGKVIVDEVEFGS 133 (183)
T ss_pred ccCCHHHHHHHHhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEe----eCCEEEEEecCCCC
Confidence 444555565566665444333322333222 2223355555433211 236888773 34689999999999
Q ss_pred hhhhcCCCCCCCEEEEE
Q psy6405 90 PADRDGRLQKGDRILSI 106 (548)
Q Consensus 90 PAaqAGrLq~GDrILaI 106 (548)
||+++| +..+++|++|
T Consensus 134 ~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 134 PAEKAG-IDFDWEITEV 149 (183)
T ss_pred HHHHcC-CCCCcEEEEE
Confidence 999999 9999999887
No 113
>PF12812 PDZ_1: PDZ-like domain
Probab=77.06 E-value=5.2 Score=33.99 Aligned_cols=40 Identities=30% Similarity=0.238 Sum_probs=33.7
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHH
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKES 119 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~a 119 (548)
++++.....++++.+-| +..|-.|.+|||+++.+.+....
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~Ld~f~~ 70 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDLDDFIK 70 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCHHHHHH
Confidence 45666778899988777 99999999999999999876653
No 114
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=73.24 E-value=8.2 Score=40.67 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=42.9
Q ss_pred EEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHcCCCc---eeEEEEe
Q psy6405 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGT---IQDIKAL 214 (548)
Q Consensus 159 VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~~g~~---V~LlV~R 214 (548)
+..+...+++..+| ++.||+|+++|+..+..+. ++...+....+.. +.+.+.|
T Consensus 133 ~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 133 VGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWD--DVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeecCCCCHHHHcC-CCCCCEEEeECCEEccCHH--HHHHHHHhccCCcccceEEEEEe
Confidence 44688999999999 9999999999999999987 6666666654555 6677777
No 115
>KOG4371|consensus
Probab=67.20 E-value=5.9 Score=47.85 Aligned_cols=81 Identities=31% Similarity=0.558 Sum_probs=60.7
Q ss_pred EEEEeeCCCCCceEEEEEeCCCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh-CCCCeEE
Q psy6405 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK-RGPPVEI 131 (548)
Q Consensus 53 tV~L~Kd~~~~GLGfsIagG~d~~~~gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk-~g~~VtV 131 (548)
.+.+.+. +-.++|+..+... .+++++|..+...+.|...|.+++||+++..+|.++.++...+.+..++ --.++.+
T Consensus 1248 ~~~~~~~-p~~~~~~~~~~~~--~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~ 1324 (1332)
T KOG4371|consen 1248 SVMLLKK-PMATLGLSLAKRT--MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQI 1324 (1332)
T ss_pred hheeeec-ccccccccccccC--cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhh
Confidence 3444444 3678888887553 3679999999999999999999999999999999999998877654333 2345666
Q ss_pred EEEec
Q psy6405 132 TLIKD 136 (548)
Q Consensus 132 tV~Rd 136 (548)
++.|.
T Consensus 1325 ~~~~~ 1329 (1332)
T KOG4371|consen 1325 TVTRE 1329 (1332)
T ss_pred eehhh
Confidence 66653
No 116
>KOG3834|consensus
Probab=60.53 E-value=38 Score=37.61 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCeEEEEEeeCCCCCc---eEEEEEeCCCCC--CCCeEEEEEcCCChhhhcCCCC-CCCEEEEE-CCeeccCccHHHH
Q psy6405 47 GTSEVSVVVLHRDLPGNS---VGITLAGGSDYE--SKEITVHKVISGTPADRDGRLQ-KGDRILSI-NGKSMKGLTHKES 119 (548)
Q Consensus 47 ~~~d~~tV~L~Kd~~~~G---LGfsIagG~d~~--~~gVvVs~V~pGSPAaqAGrLq-~GDrILaI-NGv~V~~~s~~~a 119 (548)
.+.++|.+.+.+.. .-+ ||++|.--.... ..---|-+|.++|||+.+| |+ .+|-|+-+ +.+- ....+...
T Consensus 74 kt~~~R~v~I~ps~-~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~-~~~eDl~~ 150 (462)
T KOG3834|consen 74 KTQEVRIVEIVPSN-NWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM-HEEEDLFT 150 (462)
T ss_pred ccceeEEEEecccc-cccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc-cchHHHHH
Confidence 34567777777663 455 888887433211 1123567899999999999 77 79999988 5543 33333334
Q ss_pred HHHhhCCCCeEEEEE
Q psy6405 120 LAILKRGPPVEITLI 134 (548)
Q Consensus 120 V~~lk~g~~VtVtV~ 134 (548)
......++++.+-|.
T Consensus 151 lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 151 LIESHEGKPLKLYVY 165 (462)
T ss_pred HHHhccCCCcceeEe
Confidence 444455666666654
No 117
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=50.57 E-value=38 Score=33.54 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=25.0
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEEC
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTIN 184 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVN 184 (548)
.+.|..|..+|+|+++| +.-|.+|.+|-
T Consensus 123 ~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 123 KVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred EEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 47899999999999999 99999888774
No 118
>KOG4407|consensus
Probab=32.05 E-value=25 Score=43.89 Aligned_cols=45 Identities=29% Similarity=0.552 Sum_probs=40.0
Q ss_pred CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeccCccHHHHHHHhh
Q psy6405 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124 (548)
Q Consensus 79 gVvVs~V~pGSPAaqAGrLq~GDrILaINGv~V~~~s~~~aV~~lk 124 (548)
.++|..|++++||..+. |+.||++++||..++.+..-.+++...+
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~ 188 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIK 188 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhc
Confidence 67999999999999999 9999999999999999888777765544
No 119
>KOG2921|consensus
Probab=28.53 E-value=55 Score=36.25 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCChhh-hcCCCCCCCEEEEECCeeccCccH
Q psy6405 78 KEITVHKVISGTPAD-RDGRLQKGDRILSINGKSMKGLTH 116 (548)
Q Consensus 78 ~gVvVs~V~pGSPAa-qAGrLq~GDrILaINGv~V~~~s~ 116 (548)
.++.|..|...||+. ..| |.+||.|.++||-+|...++
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV~~v~d 258 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPVHKVSD 258 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCcccCCHHH
Confidence 478999999988863 237 99999999999999987643
No 120
>KOG2921|consensus
Probab=27.19 E-value=75 Score=35.23 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.2
Q ss_pred CeEEEEeccCChhhhcCCCCCCCEEEEECCEEcCCCCHHHHHHHHHHc
Q psy6405 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKL 203 (548)
Q Consensus 156 gI~VssV~pgSpAekaGrLq~GDrILaVNGvsV~~~t~~EavelLrs~ 203 (548)
++.|..|...||+--...|.+||.|.++||.+|.... +-.+.++.+
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~--dW~ecl~ts 266 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVS--DWLECLATS 266 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCCHH--HHHHHHHhh
Confidence 5777778777776433339999999999999999765 777777764
Done!