RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6405
(548 letters)
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 174 bits (443), Expect = 9e-52
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
+VV L + G ++G+T++GG D + K V + G A R +L GD I +
Sbjct: 3 GSFKGSTVVELMKK-EGTTLGLTVSGGIDKDGK-PRVSNLRQGGIAARSDQLDVGDYIKA 60
Query: 106 INGKSMKGLTHKESLAILKR------------------------GPPVEITLIKDGAGLG 141
+NG ++ H E +++LK VE+TL K+G G
Sbjct: 61 VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120
Query: 142 FSLEGGKD-SPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLL 200
F + GG +P+ + + GG A++ G +K GD +L+++ + + + EA S+L
Sbjct: 121 FVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSIL 180
Query: 201 KKLND 205
K+
Sbjct: 181 KQCGQ 185
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 165 bits (420), Expect = 2e-48
Identities = 59/181 (32%), Positives = 92/181 (50%), Gaps = 24/181 (13%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDY----ESKEITVHKVISGTPADRDGRLQKGDR 102
G+ E + L R + +G ++AGG+D + I + K+I G A +DGRL+ D
Sbjct: 2 GSMEYEEITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEIT---------------LIKDGAGLGFSLEG 146
IL +N ++ +TH ++ LK G V + LIK GLGFS+ G
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG 119
Query: 147 GKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN 204
G + GD + V KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK
Sbjct: 120 GVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179
Query: 205 D 205
D
Sbjct: 180 D 180
Score = 81.7 bits (202), Expect = 4e-18
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 15 STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLP--GNSVGITLAGG 72
++ + + E+ + L + + V+ L +G ++AGG
Sbjct: 67 DVREVTHSAAVEALKEAGSIV------RLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 120
Query: 73 SDYESKE----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP 127
+ I V K+I G A +DGRLQ GD+IL++N ++ + H++++A LK
Sbjct: 121 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 180
Query: 128 PVEITLIKD 136
V + + K
Sbjct: 181 VVYLKVAKP 189
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 157 bits (399), Expect = 2e-45
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 28/183 (15%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSD---YESKEITVHKVISGTPADRDGRLQKGDRILS 105
+E + VVL D P GI L G S + + + +PA+R G LQ GDR+++
Sbjct: 5 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLI----------------------KDGAGLGF 142
ING + T +E+ +L+ ++TL K LG
Sbjct: 64 INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGI 123
Query: 143 SLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
++ GD PL + I G A + G L+ GD++L I+N+ + S +A +L++
Sbjct: 124 TISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182
Query: 203 LND 205
D
Sbjct: 183 CED 185
Score = 85.2 bits (211), Expect = 2e-19
Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 15 STSLISQQELQQLIDESNQSLD-----EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITL 69
T + +E QL+ +S+ + E +IP + V + + +GIT+
Sbjct: 68 PTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKK--HSVELGITI 125
Query: 70 AGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GP 127
+ S + + + + + G+ A R G L+ GD++L+I+ + + ++++ IL++
Sbjct: 126 SSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED 185
Query: 128 PVEITLIKD 136
V++ + KD
Sbjct: 186 LVKLKIRKD 194
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 133 bits (336), Expect = 2e-36
Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 29/186 (15%)
Query: 41 PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQK 99
P+ ++ ++ L + +G+ + GG + + V D RL+
Sbjct: 9 PATAEIKPNKKILIELKVE--KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKI 66
Query: 100 GDRILSINGKSM--KGLTHKESLAILKRGPPVEITLI------------------KDGAG 139
D I ING + +T + + +TL K G
Sbjct: 67 FDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKE 126
Query: 140 LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSL 199
LG SL + T+ + G E + +L+ GD I N + + ++L
Sbjct: 127 LGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYAL 180
Query: 200 LKKLND 205
K N
Sbjct: 181 FKGANG 186
Score = 78.4 bits (193), Expect = 7e-17
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V L + G +G++L+ T+ +I G + D +LQ+GD I NG +++G
Sbjct: 117 VDLMKK-AGKELGLSLSP----NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 171
Query: 114 LTHKESLAILKR-GPPVEITLIK 135
L + A+ K V + + +
Sbjct: 172 LPFQVCYALFKGANGKVSMEVTR 194
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 112 bits (281), Expect = 1e-29
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
+TL K AGLGFSLEGGK S GD+PLT+ +IF G +E++ ++ GDEIL
Sbjct: 25 TAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQ 84
Query: 183 INNVPVTEMSRIEAWSLLKKLNDGTIQ 209
+ + ++R EAW+++K L DG +
Sbjct: 85 LGGTAMQGLTRFEAWNIIKALPDGPVT 111
Score = 93.3 bits (232), Expect = 6e-23
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 41 PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQ 98
S+ + V V L + +G +L GG + +T++++ G +++ +Q
Sbjct: 20 VSVESTAEATVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQ 77
Query: 99 KGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
GD IL + G +M+GLT E+ I+K P +T++
Sbjct: 78 PGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 121 bits (305), Expect = 2e-29
Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 2 QREQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLP 61
R Q + S + + Q + + +L+ G G E + L R
Sbjct: 12 YRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPG-YVNGTEGEMEYEEITLER--G 68
Query: 62 GNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK 117
+ +G ++AGG+D I + K+I G A +DGRL+ D IL +N ++ +TH
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 118 ESLAILKRGP----------------PVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTV 159
++ LK +EI LIK GLGFS+ GG + GD + V
Sbjct: 129 AAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYV 188
Query: 160 KKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
KI GG A K+G+L+ GD+IL +N+V + ++ +A + LK D
Sbjct: 189 TKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 234
Score = 77.3 bits (189), Expect = 5e-15
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
E +V+HR +G + GG D + I + +++G PAD G L+KGD+ILS
Sbjct: 303 DIPREPRRIVIHRG--STGLGFNIVGGED--GEGIFISFILAGGPADLSGELRKGDQILS 358
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
+NG ++ +H+++ LK G V I
Sbjct: 359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390
Score = 76.1 bits (186), Expect = 1e-14
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
P I + + GLGF++ GG+D + + I GG A+ +G+L+ GD+IL++N
Sbjct: 306 REPRRIVIHRGSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNG 361
Query: 186 VPVTEMSRIEAWSLLKKLND 205
V + S +A LK
Sbjct: 362 VDLRNASHEQAAIALKNAGQ 381
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 109 bits (275), Expect = 6e-29
Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
G + + V +LH++ G +G +LAGG+D E+K ITVH+V A ++G +Q
Sbjct: 4 GSSGATLKQLDGIHVTILHKE-EGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQ 62
Query: 99 KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
KG+ +LSINGKS+KG TH ++LAIL++ P + ++
Sbjct: 63 KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIV 99
Score = 91.4 bits (227), Expect = 2e-22
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
G V I ++GAGLGFSL GG D ++ +TV ++F G A + G ++ G+E+L+IN
Sbjct: 14 DGIHVTILHKEEGAGLGFSLAGGADLE--NKVITVHRVFPNGLASQEGTIQKGNEVLSIN 71
Query: 185 NVPVTEMSRIEAWSLLKK 202
+ + +A ++L++
Sbjct: 72 GKSLKGTTHHDALAILRQ 89
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 107 bits (269), Expect = 5e-28
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 118 ESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
E+L ITL + GLGFS+ GG SP GD P+ VK +F G A ++G+LK G
Sbjct: 16 ENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRG 75
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
D+I+ +N + ++ EA ++LK+
Sbjct: 76 DQIIAVNGQSLEGVTHEEAVAILKR 100
Score = 94.3 bits (235), Expect = 2e-23
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD--YESKEITVHKVISGTPADRDGR 96
G +L + + L R + +G ++ GG + I V V + A DGR
Sbjct: 14 GTENLYFQSMPQCKSITLERG--PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGR 71
Query: 97 LQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
L++GD+I+++NG+S++G+TH+E++AILKR V + ++
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSS 112
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 114 bits (285), Expect = 7e-28
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 57 HRDLPGNSVGITLA-GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLT 115
G +G+ + G + + +++G PA R G+L GD+I+SING S+ GL
Sbjct: 210 LEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP 269
Query: 116 HKESLAILK-------------RGPPVEITLI---KDGAGLGFSLEGGKDSPFGDQPLTV 159
I+K PPV LI LGFS++ G +
Sbjct: 270 LATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGI----------I 319
Query: 160 KKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
+ GG AE+ G ++ G I+ IN V + + L
Sbjct: 320 CSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSN 361
Score = 66.5 bits (161), Expect = 5e-12
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 15 STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD 74
S + Q +I + L L I V+ V++ R +G ++ G
Sbjct: 264 SLVGLPLATCQGII----KGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-- 317
Query: 75 YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITL 133
+ ++ G A+R G ++ G RI+ ING+S+ H++ + L EI +
Sbjct: 318 ------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVG-EIHM 368
Score = 57.3 bits (137), Expect = 5e-09
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
G LG + + + + GG A ++G+L GD+I++IN + +
Sbjct: 215 GEILGVVVVESGWGS-ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATC 273
Query: 197 WSLLKKL 203
++K L
Sbjct: 274 QGIIKGL 280
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 105 bits (263), Expect = 2e-27
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G + I L K GLGFS+ + G P+ VK I G A ++G+LKAGD ++ +
Sbjct: 8 KVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Query: 184 NNVPVTEMSRIEAWSLLKKLNDG 206
N V + S+ E SLL+
Sbjct: 68 NGVDLAGKSQEEVVSLLRSTKME 90
Score = 85.1 bits (211), Expect = 3e-20
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSIN 107
+ + L + +G ++ I V ++ A +DGRL+ GDR++ +N
Sbjct: 11 KRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVN 68
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLI 134
G + G + +E +++L+ ++L+
Sbjct: 69 GVDLAGKSQEEVVSLLRSTKMEGTVSLL 96
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 103 bits (258), Expect = 2e-26
Identities = 32/95 (33%), Positives = 47/95 (49%)
Query: 112 KGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN 171
+ L + S K G + I L K GLGFS+ + G P+ VK I G A ++
Sbjct: 15 ENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 74
Query: 172 GQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDG 206
G+LKAGD ++ +N V + S+ E SLL+
Sbjct: 75 GRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109
Score = 85.1 bits (211), Expect = 4e-20
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSI 106
+ + L + +G ++ I V ++ A +DGRL+ GDR++ +
Sbjct: 29 GKRLNIQLKKG--TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
Query: 107 NGKSMKGLTHKESLAILKRGPP 128
NG + G + +E +++L+
Sbjct: 87 NGVDLVGKSQEEVVSLLRSTKM 108
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 102 bits (255), Expect = 3e-26
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 31 SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTP 90
S+ S CP ++PG + ++ + + + +G+++ GG D I +H+V
Sbjct: 2 SSGSSGPATCP--IVPG--QEMIIEISKG--RSGLGLSIVGGKDTPLNAIVIHEVYEEGA 55
Query: 91 ADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
A RDGRL GD+IL +NG ++ +H+E++ L++ V + + +D A
Sbjct: 56 AARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAH 105
Score = 87.5 bits (217), Expect = 5e-21
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + I + K +GLG S+ GGKD+P + + +++ G A ++G+L AGD+IL +N
Sbjct: 16 GQEMIIEISKGRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNG 73
Query: 186 VPVTEMSRIEAWSLLKK 202
V + S EA + L++
Sbjct: 74 VDLRNSSHEEAITALRQ 90
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 100 bits (252), Expect = 7e-26
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
+ V LH++ GN+ G + GG+ + + + + V G PADR+G ++ GDR+L
Sbjct: 1 SMRTVEVTLHKE--GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLL 58
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
S++G + G TH E+++ILK+ G + + D +
Sbjct: 59 SVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVS 93
Score = 90.7 bits (226), Expect = 2e-22
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
VE+TL K+G GF + GG +P+ + + GG A++ G +K GD +L+++ +
Sbjct: 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIR 64
Query: 188 VTEMSRIEAWSLLKK 202
+ + EA S+LK+
Sbjct: 65 LLGTTHAEAMSILKQ 79
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 100 bits (251), Expect = 2e-25
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 30 ESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVIS 87
+ S L + VV + +D PG S+G+T+AGG+ + + I V V
Sbjct: 4 HHHHSSGVDLGTENLYFQSMHEKVVNIQKD-PGESLGMTVAGGASHREWDLPIYVISVEP 62
Query: 88 GTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
G RDGR++ GD +L+++G + ++ E++A+LKR + + ++ G
Sbjct: 63 GGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEG 115
Score = 89.4 bits (222), Expect = 1e-21
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 113 GLTHKESLAILKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN 171
G+ + + + KD G LG ++ GG D P+ V + GG ++
Sbjct: 10 GVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRD 69
Query: 172 GQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
G++K GD +L ++ V +TE+SR EA +LLK+
Sbjct: 70 GRIKTGDILLNVDGVELTEVSRSEAVALLKR 100
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 99.8 bits (249), Expect = 2e-25
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ V L +D N +GI++ GG+ Y + + +V TPA DG + GD I +N
Sbjct: 22 SMVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 79
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIK 135
G+S+KG T E +++ V I K
Sbjct: 80 GRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
Score = 81.0 bits (200), Expect = 9e-19
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 128 PVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P ++TL KD +G S+ GG L + ++F A +G + AGDEI +N
Sbjct: 25 PGKVTLQKDAQNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 187 PVTEMSRIEAWSLLKKLND 205
+ +++E +++++
Sbjct: 82 SIKGKTKVEVAKMIQEVKG 100
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 99.0 bits (247), Expect = 3e-25
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF-GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+ L+KD GLGFS+ +D + ++ + G AE++G L GD ++++N
Sbjct: 16 VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75
Query: 187 PVTEMSRIEAWSLLKKLNDGTIQ 209
+ S EA +LK + G +
Sbjct: 76 CLDNTSLAEAVEILKAVPPGLVH 98
Score = 86.3 bits (214), Expect = 1e-20
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
+ EV +V L +D +G ++ D I + +++ A+R G L GDR++
Sbjct: 13 SPEVKIVELVKD--CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLV 70
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITL 133
S+N + + E++ ILK PP + L
Sbjct: 71 SVNEYCLDNTSLAEAVEILKAVPPGLVHL 99
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 99.4 bits (248), Expect = 4e-25
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILS 105
+ + V + + P +S+GI++AGG + I + + A + +L+ GDRI++
Sbjct: 22 SMGLRTVEMKKG-PTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
I G S +G+TH +++ +LK +E+ ++ G
Sbjct: 81 ICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGG 113
Score = 97.4 bits (243), Expect = 2e-24
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+ + K LG S+ GG SP GD P+ + + G A + +L+ GD I+TI
Sbjct: 25 LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 187 PVTEMSRIEAWSLLKK 202
M+ +A +LLK
Sbjct: 85 STEGMTHTQAVNLLKN 100
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 99.4 bits (248), Expect = 4e-25
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
E+ ++ L +D N +G++LAG D I V + PA DGR++ GD +L IN
Sbjct: 24 GELHIIELEKD--KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINN 81
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
+ + G +H+ + AI+K V++ I++
Sbjct: 82 QILYGRSHQNASAIIKTAPSKVKLVFIRN 110
Score = 86.7 bits (215), Expect = 1e-20
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
G I L KD GLG SL G KD + V I G A +G+++ GDE+L IN
Sbjct: 23 PGELHIIELEKDKNGLGLSLAGNKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEIN 80
Query: 185 NVPVTEMSRIEAWSLLKK 202
N + S A +++K
Sbjct: 81 NQILYGRSHQNASAIIKT 98
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 99.1 bits (247), Expect = 4e-25
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G V + IK L +LEGG DSP G + V ++ GG AE++G + GDEI+ IN
Sbjct: 16 GKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAING 73
Query: 186 VPVTEMSRIEAWSLLKKLNDGTIQDIK 212
VT+ + EA + L+K + I
Sbjct: 74 KIVTDYTLAEAEAALQKAWNQGGDWID 100
Score = 94.1 bits (234), Expect = 3e-23
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
G ++ P V L R S+ + L GG D ++ V V G A+R G +
Sbjct: 4 GAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVV 63
Query: 99 KGDRILSINGKSMKGLTHKESLAILKR---GPPVEITLI 134
KGD I++INGK + T E+ A L++ I L+
Sbjct: 64 KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 97.7 bits (244), Expect = 6e-25
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ E+ V LH+ G +GI L +D + + ++ G A +DGRL DR+L+IN
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTDEPG--VFILDLLEGGLAAQDGRLSSNDRVLAIN 58
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
G +K T + + I++ G V +T+ + G
Sbjct: 59 GHDLKYGTPELAAQIIQASGERVNLTIARPG 89
Score = 73.1 bits (180), Expect = 3e-16
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 129 VEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+++ L K G LG L D P + + + GG A ++G+L + D +L IN
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 187 PVTEMSRIEAWSLLKK 202
+ + A +++
Sbjct: 61 DLKYGTPELAAQIIQA 76
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 98.3 bits (245), Expect = 1e-24
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ V L +D N +GI++ GG+ Y + + +V TPA DG + GD I +N
Sbjct: 17 PTVPGKVTLQKD-AQNLIGISIGGGAQY-CPCLYIVQVFDNTPAALDGTVAAGDEITGVN 74
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
G+S+KG T E +++ V I K A
Sbjct: 75 GRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA 106
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P ++TL KD +G S+ GG L + ++F A +G + AGDEI +N
Sbjct: 20 PGKVTLQKDAQNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 187 PVTEMSRIEAWSLLKK 202
+ +++E ++++
Sbjct: 77 SIKGKTKVEVAKMIQE 92
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 97.1 bits (242), Expect = 2e-24
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
S ++V + + ++GI + GG++ + + G A G+L+ G IL +NG
Sbjct: 5 SSGTLVRVKK--SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 109 KSMKGLTHKESLAILKRG------PPVEITLIKDGAG 139
+++G H+E+ I+ ++ + + +G
Sbjct: 63 LTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNSG 99
Score = 80.2 bits (198), Expect = 1e-18
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
+ + K A LG ++EGG ++ + I GG A GQLK G IL +N + +
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 191 MSRIEAWSLLKK 202
EA ++ +
Sbjct: 68 KEHREAARIIAE 79
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 96.6 bits (241), Expect = 2e-24
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+ L++ AG G +L GG+D GD PL V+ + G A++ G+L+ GD +L IN
Sbjct: 10 SGHFSVELVRGYAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHING 68
Query: 186 VPVTEMSRIEAWSLLKK 202
++ +A ++
Sbjct: 69 ESTQGLTHAQAVERIRA 85
Score = 92.4 bits (230), Expect = 6e-23
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSIN 107
S V L R G+TL GG D + V ++ PA R GRL+ GD +L IN
Sbjct: 10 SGHFSVELVRG--YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHIN 67
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
G+S +GLTH +++ ++ GP + + + + +G
Sbjct: 68 GESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 96.5 bits (241), Expect = 2e-24
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRI 103
P ++ V L ++ NS+GI++ GG + + I V VI A+ DGR+ KGDR+
Sbjct: 1 PKPGDIFEVELAKN--DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 58
Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
L++NG S++G THK+++ L+ G V + L K
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 92
Score = 92.3 bits (230), Expect = 5e-23
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
E+ L K+ LG S+ GG ++ + VK + G AE +G++ GD +L +N V +
Sbjct: 7 FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 66
Query: 189 TEMSRIEAWSLLKK 202
+ +A L+
Sbjct: 67 EGATHKQAVETLRN 80
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 95.1 bits (237), Expect = 6e-24
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + + +G+++ GGSD I +H+V A +DGRL GD+IL +NG ++
Sbjct: 7 TIEISKG--RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Query: 113 GLTHKESLAILKR-GPPVEITLIKD 136
TH E++ +L++ V +TL +D
Sbjct: 65 KATHDEAINVLRQTPQRVRLTLYRD 89
Score = 91.6 bits (228), Expect = 1e-22
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G I + K GLG S+ GG D+ G + + +++ G A K+G+L AGD+IL +N
Sbjct: 3 GCETTIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNG 60
Query: 186 VPVTEMSRIEAWSLLKK 202
+ + + + EA ++L++
Sbjct: 61 IDLRKATHDEAINVLRQ 77
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 95.5 bits (238), Expect = 6e-24
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
G + V+L ++ +GI++ GG ++ I + ++ G PADR G L GD IL+
Sbjct: 5 QGVGPIRKVLLLKE-DHEGLGISITGGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILA 62
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG +++ HKE++ IL + +E +
Sbjct: 63 VNGVNLRDTKHKEAVTILSQQRGEIEFEV 91
Score = 83.2 bits (206), Expect = 1e-19
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
GP ++ L+K D GLG S+ GGK+ P+ + +I G A++ G L GD IL +N
Sbjct: 8 GPIRKVLLLKEDHEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVN 64
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + EA ++L +
Sbjct: 65 GVNLRDTKHKEAVTILSQ 82
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 96.8 bits (241), Expect = 1e-23
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 11/160 (6%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G + V+L +D +G+ L + I V V + +PA G L+ GD++L I
Sbjct: 1 GAMDPREVILCKD-QDGKIGLRLKSIDNG----IFVQLVQANSPASLVG-LRFGDQVLQI 54
Query: 107 NGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSP----FGDQPLTVKKI 162
NG++ G + ++ +LK+ +IT+ ++ KDS F + + I
Sbjct: 55 NGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSI 114
Query: 163 FTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
A +NG L I IN V + + +L
Sbjct: 115 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST 153
Score = 62.9 bits (153), Expect = 6e-12
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P E+ L KD +G L+ + F V+ + A G L+ GD++L IN
Sbjct: 5 PREVILCKDQDGKIGLRLKSIDNGIF------VQLVQANSPASLVG-LRFGDQVLQINGE 57
Query: 187 PVTEMSRIEAWSLLKKLNDGTI 208
S +A +LK+ I
Sbjct: 58 NCAGWSSDKAHKVLKQAFGEKI 79
Score = 54.1 bits (130), Expect = 8e-09
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 16/122 (13%)
Query: 15 STSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSD 74
+ + S + +++ ++ G ++ I + +H+D G VG G
Sbjct: 58 NCAGWSSDKAHKVLKQA-----FGEKITMTIRDRPFERTITMHKDSTG-HVGFIFKNGKI 111
Query: 75 YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
++ + A R+G L I ING+++ GL + IL G V IT+
Sbjct: 112 --------TSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162
Query: 134 IK 135
+
Sbjct: 163 MP 164
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 95.6 bits (238), Expect = 1e-23
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 122 ILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
+L + GA LG + GGK + G + K+ G A+ G L+ GDE+L
Sbjct: 32 LLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91
Query: 182 TINNVPVTEMSRIEAWSLLKK 202
N + + E ++++ +
Sbjct: 92 EWNGRLLQGATFEEVYNIILE 112
Score = 93.3 bits (232), Expect = 7e-23
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 31 SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISG 88
+ Q +G I + + RD G +G+ + GG ES + KV G
Sbjct: 17 TWQPSKDGDRLIGRILLNKRLKDGSVPRD-SGAMLGLKVVGGKMTESGRLCAFITKVKKG 75
Query: 89 TPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR---GPPVEITLIKDGAGLG 141
+ AD G L+ GD +L NG+ ++G T +E I+ P VE+ + + G G
Sbjct: 76 SLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPSSG 131
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 93.9 bits (234), Expect = 1e-23
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+ + V + + +GI++ GG + + I + K+ G AD+ L GD ILS+
Sbjct: 1 GSLQRRRVTVRKA-DAGGLGISIKGGRENKMP-ILISKIFKGLAADQTEALFVGDAILSV 58
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITL 133
NG+ + TH E++ LK+ G V + +
Sbjct: 59 NGEDLSSATHDEAVQALKKTGKEVVLEV 86
Score = 81.9 bits (203), Expect = 2e-19
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+T+ K GLG S++GG+++ P+ + KIF G A++ L GD IL++N
Sbjct: 3 LQRRRVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVN 59
Query: 185 NVPVTEMSRIEAWSLLKK 202
++ + EA LKK
Sbjct: 60 GEDLSSATHDEAVQALKK 77
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 94.8 bits (236), Expect = 2e-23
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 37 EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGR 96
G + S +V + + PG+++GI+L S IT+ ++ + DR G
Sbjct: 2 SSGSSGDTVANASGPLMVEIVKT-PGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGA 60
Query: 97 LQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
L GD ILSI+G SM+ + E+ +L V + ++
Sbjct: 61 LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEIL 99
Score = 79.4 bits (196), Expect = 4e-18
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P+ + ++K G+ LG SL +T+ +I +++G L GD IL+I+
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGT 73
Query: 187 PVTEMSRIEAWSLLKK 202
+ S +EA LL
Sbjct: 74 SMEHCSLLEATKLLAS 89
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 93.1 bits (232), Expect = 3e-23
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ VV L + +G + GG + ++ I + +VI G ADR G L++GD++LS+N
Sbjct: 3 SGSSGVVELPKT--DEGLGFNIMGGKE-QNSPIYISRVIPGGVADRHGGLKRGDQLLSVN 59
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKD 136
G S++G H++++ +LK V++ +
Sbjct: 60 GVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89
Score = 88.8 bits (221), Expect = 1e-21
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + L K GLGF++ GGK+ + P+ + ++ GG A+++G LK GD++L++N
Sbjct: 4 GSSGVVELPKTDEGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNG 60
Query: 186 VPVTEMSRIEAWSLLKK 202
V V +A LLK
Sbjct: 61 VSVEGEQHEKAVELLKA 77
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 93.1 bits (232), Expect = 3e-23
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
+ +V L + S GI + G +S I + ++ +PA GRL+ GDRIL
Sbjct: 5 LIHMVTLDKT-GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRIL 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
S+NGK ++ T + + ++K +E+ +
Sbjct: 64 SLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 73.9 bits (182), Expect = 2e-16
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 130 EITLIKDG-AGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+TL K G G + G+ + +K I A G+LK GD IL++N
Sbjct: 8 MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 186 VPVTEMSRIEAWSLLKK 202
V + L+K+
Sbjct: 68 KDVRNSTEQAVIDLIKE 84
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 93.8 bits (233), Expect = 4e-23
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRILS 105
+E + VVL D P GI L G + + + +PA+R G LQ GDR+++
Sbjct: 14 TETTEVVLTAD-PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
ING + T +E+ +L+ ++TL
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKVTL 101
Score = 79.5 bits (196), Expect = 4e-18
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSP-FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
E+ L D G G L+G + P + I AE+ G L+ GD ++ IN
Sbjct: 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 186 VPVTEMSRIEAWSLLKK 202
+P + + EA LL+
Sbjct: 76 IPTEDSTFEEANQLLRD 92
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 92.8 bits (231), Expect = 6e-23
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSI 106
V V L R + +G+ L G + + ++ G+PA DGRL GDRIL +
Sbjct: 7 GYVFTVELERG--PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGLGFSLEGGKDS 150
NG S+ GL + ++ +++ G + + K + G S
Sbjct: 65 NGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSS 109
Score = 90.5 bits (225), Expect = 4e-22
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ L + +GLG L G + G L ++ + G A +G+L GD IL +N +
Sbjct: 10 FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
Query: 189 TEMSRIEAWSLLKK 202
+ + A L++
Sbjct: 70 LGLGYLRAVDLIRH 83
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 92.5 bits (230), Expect = 8e-23
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
+ V+L ++ +GI++ GG ++ I + ++ G PADR G L GD IL+
Sbjct: 23 LYFQGIRKVLLLKE-DHEGLGISITGGKEHGVP-ILISEIHPGQPADRCGGLHVGDAILA 80
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG +++ HKE++ IL + +E +
Sbjct: 81 VNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
Score = 79.4 bits (196), Expect = 3e-18
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+G + L +D GLG S+ GGK+ P+ + +I G A++ G L GD IL +N
Sbjct: 26 QGIRKVLLLKEDHEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVN 82
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + EA ++L +
Sbjct: 83 GVNLRDTKHKEAVTILSQ 100
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 92.4 bits (230), Expect = 9e-23
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
E ++LH+ +G + GG D E I V +++G PAD G L++GDRILS
Sbjct: 11 GDAREPRKIILHKG--STGLGFNIVGGEDGEG--IFVSFILAGGPADLSGELRRGDRILS 66
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
+NG +++ TH+++ A LKR +T++
Sbjct: 67 VNGVNLRNATHEQAAAALKRAGQ-SVTIV 94
Score = 80.5 bits (199), Expect = 1e-18
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P +I L K GLGF++ GG+D + V I GG A+ +G+L+ GD IL++N V
Sbjct: 16 PRKIILHKGSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVN 71
Query: 188 VTEMSRIEAWSLLKK 202
+ + +A + LK+
Sbjct: 72 LRNATHEQAAAALKR 86
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 92.0 bits (229), Expect = 9e-23
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQK 99
+ + V L R+ P S+GI++ GG S+ I + V+ +PA ++G L+
Sbjct: 2 SMQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 100 GDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
GDRI+ ++G ++ +H++++ +++ G PV +
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 95
Score = 76.6 bits (189), Expect = 2e-17
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPF------GDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
P + L + LG S+ GG+ + + +K + A KNG LK GD I
Sbjct: 5 PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
+ ++ + + + S +A ++K
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRK 86
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 92.4 bits (230), Expect = 1e-22
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 17 SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYE 76
S+ + E QLI Q V V L + P +G ++ G
Sbjct: 1 SMPACDEFDQLIKNMAQG--------------RHVEVFELLKP-PSGGLGFSVVGLRSEN 45
Query: 77 SKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHKESLAILKR-GPPVEIT 132
E I V ++ G+ A RDGRL++ D+IL+ING+++ + +TH+++++IL++ V++
Sbjct: 46 RGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105
Query: 133 LIKD 136
+ +
Sbjct: 106 IARG 109
Score = 86.7 bits (215), Expect = 1e-20
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
L+K GLGFS+ G + G+ + V++I G A ++G+LK D+IL IN +
Sbjct: 23 VFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQAL 82
Query: 189 TE-MSRIEAWSLLKK 202
+ ++ +A S+L+K
Sbjct: 83 DQTITHQQAISILQK 97
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 92.0 bits (229), Expect = 1e-22
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGD 101
G+S V L R +G ++AGG I V ++ G A R G LQ GD
Sbjct: 4 GSSGRHVACLARS--ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61
Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
R+LSING + H ++++L P + + L ++
Sbjct: 62 RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99
Score = 87.0 bits (216), Expect = 6e-21
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
L + GLGFS+ GGK S GD + V +I GG A + G L+ GD +L+
Sbjct: 6 SGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLS 65
Query: 183 INNVPVTEMSRIEAWSLLKK 202
IN V VTE A SLL
Sbjct: 66 INGVDVTEARHDHAVSLLTA 85
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 91.2 bits (227), Expect = 1e-22
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+E+ L+K GLGFS+ GG + GD + + KI GG A+K+G+L+ GD +L +NN
Sbjct: 5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
Query: 187 PVTEMSRIEAWSLLKK 202
+ ++ EA + LK
Sbjct: 65 NLQDVRHEEAVASLKN 80
Score = 89.3 bits (222), Expect = 6e-22
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRI 103
+ + V L + +G ++AGG + I + K+I G A +DGRLQ GDR+
Sbjct: 1 SMTIMEVNLLKG--PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
L++N +++ + H+E++A LK V + + K G+
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 91.2 bits (227), Expect = 1e-22
Identities = 28/94 (29%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADRDGRLQKGDRIL 104
SE V L ++ +GIT+AG + E I V + + + DGR+Q GD+I+
Sbjct: 2 MSETFDVELTKN--VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQII 59
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKDG 137
+++G +++G T+++++ +L+ G V +TL++ G
Sbjct: 60 AVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 93
Score = 83.1 bits (206), Expect = 1e-19
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 129 VEITLIKDGAGLGFSLEGGKDS-PFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
++ L K+ GLG ++ G + VK I E +G+++ GD+I+ ++
Sbjct: 6 FDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN 65
Query: 188 VTEMSRIEAWSLLKK 202
+ + +A +L+
Sbjct: 66 LQGFTNQQAVEVLRH 80
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 91.7 bits (228), Expect = 1e-22
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDY-ESKEITVHKVISGTPADRDGRLQKGDRILSI 106
V+ +G+ + GG + E + +H+VI G +DGRL+ GD+++SI
Sbjct: 12 RDPAFRVITVTK--ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
Query: 107 NGKSMKGLTHKESLAILKR-----GPPVEITLIKDG 137
N +SM G++ +E+ +I+ R P EI I+ G
Sbjct: 70 NKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG 105
Score = 87.1 bits (216), Expect = 6e-21
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 123 LKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
L R P + + GLG + GG + G + + ++ GG K+G+LK GD++++
Sbjct: 10 LDRDPAFRVITVTKETGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 183 INNVPVTEMSRIEAWSLLKK 202
IN + +S EA S++ +
Sbjct: 69 INKESMIGVSFEEAKSIITR 88
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 92.1 bits (229), Expect = 2e-22
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 31 SNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITV 82
+ S L + + V L R+ P S+GI++ GG S+ I +
Sbjct: 5 HHHSSGVDLGTENLYFQSMQPRRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFI 63
Query: 83 HKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
V+ +PA ++G L+ GDRI+ ++G ++ +H++++ +++ G PV +
Sbjct: 64 KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMV 115
Score = 77.1 bits (190), Expect = 3e-17
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 113 GLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPF------GDQPLTVKKIFTG 165
G+ + P + L + LG S+ GG+ + + +K +
Sbjct: 10 GVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED 69
Query: 166 GCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
A KNG LK GD I+ ++ + + + S +A ++K
Sbjct: 70 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 106
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 90.8 bits (226), Expect = 2e-22
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
S+ + L + PG +G+++ G + + V ++ G AD DGRL +GD+IL +N
Sbjct: 2 MSDTLTIGLQKK-PGKGLGLSIVGKRNDTG--VFVSDIVKGGIADADGRLMQGDQILMVN 58
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITL 133
G+ ++ T + A+LK V + +
Sbjct: 59 GEDVRNATQEAVAALLKCSLGTVTLEV 85
Score = 75.0 bits (185), Expect = 6e-17
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ I L K G GLG S+ G ++ + V I GG A+ +G+L GD+IL +N
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGED 61
Query: 188 VTEMSRIEAWSLLKK 202
V ++ +LLK
Sbjct: 62 VRNATQEAVAALLKC 76
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 92.1 bits (229), Expect = 2e-22
Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 13 ASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGG 72
+S +S + ++ +I + Q ++ + + R +G ++
Sbjct: 2 SSGSSGLGNEDFNSVIQQMAQG--------------RQIEYIDIERP-STGGLGFSVVAL 46
Query: 73 SDYESKE--ITVHKVISGTPADRDGRLQKGDRILSINGKSM-KGLTHKESLAILKR-GPP 128
+ I V V G+ ADRD RL++ D+IL+IN + + ++H++++A+L++
Sbjct: 47 RSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS 106
Query: 129 VEITLIKD 136
+ + + ++
Sbjct: 107 LRLIVARE 114
Score = 87.9 bits (218), Expect = 5e-21
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 129 VEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
I + + GLGFS+ + G + VK + G A+++ +LK D+IL IN+ P
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTP 86
Query: 188 VTE-MSRIEAWSLLKK 202
+ + +S +A +LL++
Sbjct: 87 LDQNISHQQAIALLQQ 102
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 91.3 bits (227), Expect = 2e-22
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKG 100
+ + +VLHRD S+G + GG I V K++ PA ++G LQ
Sbjct: 6 SGKSLTLVLHRD--SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63
Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
DRI+ +NG+ + TH +++ K P+ + +++ +G
Sbjct: 64 DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103
Score = 84.4 bits (209), Expect = 5e-20
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDS-----PFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
G + + L +D LGF++ GG+ S + + V KI G A K G L+ D I
Sbjct: 7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRI 66
Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
+ +N ++ + +A K
Sbjct: 67 IEVNGRDLSRATHDQAVEAFKT 88
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 91.3 bits (227), Expect = 2e-22
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSING 108
+ V L+ + N +GI++ G S+ I + ++ G DGR++ GD +L +N
Sbjct: 5 NIITVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
Query: 109 KSMKGLTHKESLAILK----RGPPVEITLIKDGAGLGFSLEGGKDSP 151
+ + +++ +++ +L+ + P+ +T+ K G G E D P
Sbjct: 64 MNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG--GSGNEVWIDGP 108
Score = 81.7 bits (202), Expect = 4e-19
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 129 VEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ +TL + LG S+ G + GD + + I GG +G+++ GD +L +N++
Sbjct: 7 ITVTLNMEKYNFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 188 VTEMSRIEAWSLLKK 202
MS +A +L+
Sbjct: 66 FENMSNDDAVRVLRD 80
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 91.7 bits (228), Expect = 2e-22
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
E V L R G S+GI + G I V VI G+ A +G +Q D+I++
Sbjct: 15 ETYNVELVRK-DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVA 73
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
++G +++G + + + +L+ G V +TL++
Sbjct: 74 VDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS 108
Score = 75.2 bits (185), Expect = 2e-16
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+ L++ DG LG + G + + VK + G A NG ++ D+I+ ++
Sbjct: 16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD 75
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + + +L+
Sbjct: 76 GVNIQGFANHDVVEVLRN 93
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 90.8 bits (226), Expect = 2e-22
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
+ V L R + G + GG + + I + VI+ ADRDGRL GD ++ ++G
Sbjct: 8 YKELDVHLRRM--ESGFGFRILGGDE-PGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLI 134
+ G TH+ + ++ ++ L
Sbjct: 65 IPVAGKTHRYVIDLMHHAARNGQVNLT 91
Score = 88.5 bits (220), Expect = 1e-21
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+++ L + +G GF + GG + QP+ + + G A+++G+L GDE++ ++ +PV
Sbjct: 11 LDVHLRRMESGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPV 67
Query: 189 TEMSRIEAWSLLKK 202
+ L+
Sbjct: 68 AGKTHRYVIDLMHH 81
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 90.9 bits (226), Expect = 3e-22
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
V V L D G+ +G + GG + V ++ G ADRDGRLQ GD IL I G
Sbjct: 14 GHVEEVELIND--GSGLGFGIVGGKT---SGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+++G+T ++ +L+ G V + + +D AG
Sbjct: 69 TNVQGMTSEQVAQVLRNCGNSVRMLVARDPAG 100
Score = 86.3 bits (214), Expect = 1e-20
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G E+ LI DG+GLGF + GGK S + V+ I GG A+++G+L+ GD IL I
Sbjct: 14 GHVEEVELINDGSGLGFGIVGGKTSG-----VVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 186 VPVTEMSRIEAWSLLKK 202
V M+ + +L+
Sbjct: 69 TNVQGMTSEQVAQVLRN 85
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 89.6 bits (223), Expect = 4e-22
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
+I L + G GF + GG + +P+ + I G A+ +G+L++GDE+++++ PV
Sbjct: 5 DIFLWRKETGFGFRILGGNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI 61
Query: 190 EMSRIEAWSLLKK 202
S L+++
Sbjct: 62 GKSHQLVVQLMQQ 74
Score = 87.7 bits (218), Expect = 2e-21
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
S + L R G + GG++ + I + ++ AD DGRL+ GD ++S++G
Sbjct: 1 SMEQDIFLWRK--ETGFGFRILGGNE-PGEPIYIGHIVPLGAADTDGRLRSGDELISVDG 57
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLI 134
+ G +H+ + ++++ + L
Sbjct: 58 TPVIGKSHQLVVQLMQQAAKQGHVNLT 84
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 90.5 bits (225), Expect = 5e-22
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ + V L R G +L GG +Y + V ++ PA+R G+++ GD IL IN
Sbjct: 22 SMDFYTVELERG--AKGFGFSLRGGREYNMD-LYVLRLAEDGPAERSGKMRIGDEILEIN 78
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKD 136
G++ K + H ++ ++K G V + L +
Sbjct: 79 GETTKNMKHSRAIELIKNGGRRVRLFLKRG 108
Score = 87.0 bits (216), Expect = 7e-21
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
+ L + G GFSL GG++ + L V ++ G AE++G+++ GDEIL IN
Sbjct: 27 TVELERGAKGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
Query: 190 EMSRIEAWSLLKK 202
M A L+K
Sbjct: 84 NMKHSRAIELIKN 96
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 90.5 bits (225), Expect = 5e-22
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
VEI L K GLGFS+ GG + GD + V KI GG A+K+G+L+ GD +L +NN
Sbjct: 26 VEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNY 85
Query: 187 PVTEMSRIEAWSLLKK 202
+ E++ EA ++LK
Sbjct: 86 SLEEVTHEEAVAILKN 101
Score = 89.7 bits (223), Expect = 8e-22
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRI 103
+ V + L + +G ++AGG + I V K+I G A +DGRLQ GDR+
Sbjct: 22 SMTVVEIKLFKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79
Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
L +N S++ +TH+E++AILK V + + K
Sbjct: 80 LMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 89.7 bits (223), Expect = 5e-22
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
+ + V L R G +GIT++G + I + + G A+R G + GDRIL+IN
Sbjct: 4 AIIYTVELKRY--GGPLGITISGTEEPFDP-IIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
S+KG E++ +L+ G V + + K
Sbjct: 61 SSLKGKPLSEAIHLLQMAGETVTLKIKKQ 89
Score = 80.4 bits (199), Expect = 8e-19
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVT 189
+ L + G LG ++ G ++ P+ + + GG AE+ G + GD IL IN+ +
Sbjct: 8 TVELKRYGGPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64
Query: 190 EMSRIEAWSLLKK 202
EA LL+
Sbjct: 65 GKPLSEAIHLLQM 77
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 89.2 bits (222), Expect = 6e-22
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ L K G GF++ GG + D+ L +K + G A +G+++ GD I+++N+ V
Sbjct: 2 IHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58
Query: 189 TEMSRIEAWSLLKKLNDGT 207
+ + + + + G
Sbjct: 59 LGHTHAQVVKIFQSIPIGA 77
Score = 82.7 bits (205), Expect = 1e-19
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
L + G T+ GG + + + + ++ PA DG+++ GD I+S+N + G
Sbjct: 4 TKLRKS--SRGFGFTVVGGDE-PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLG 60
Query: 114 LTHKESLAILKR---GPPVEITL 133
TH + + I + G V++ L
Sbjct: 61 HTHAQVVKIFQSIPIGASVDLEL 83
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 90.2 bits (224), Expect = 7e-22
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKG 100
+V + R+ P S+GI++ GG + I + +V+ +PA + L+ G
Sbjct: 14 GPPRIVEIFRE-PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTG 72
Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
D+IL ++G ++ +H E++ +K G PV + +
Sbjct: 73 DKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112
Score = 81.4 bits (201), Expect = 9e-19
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGD 178
GPP + + ++ LG S+ GG+ + + +K++ A K LK GD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 179 EILTINNVPVTEMSRIEAWSLLKK 202
+IL ++ V + S EA +K
Sbjct: 74 KILEVSGVDLQNASHSEAVEAIKN 97
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 89.0 bits (221), Expect = 8e-22
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+G E+ + K LG ++ G +K+I GG + + GD I +IN
Sbjct: 3 KGIEKEVNVYKSEDSLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIESIN 57
Query: 185 NVPVTEMSRIEAWSLLKKLNDGTIQDIK 212
+ + LK+L + +K
Sbjct: 58 GENIVGWRHYDVAKKLKELKKEELFTMK 85
Score = 70.9 bits (174), Expect = 2e-15
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
V +++ +S+G+T+ + ++ G D + GD I SING+
Sbjct: 5 IEKEVNVYKS--EDSLGLTITDNGV---GYAFIKRIKDGGVIDSVKTICVGDHIESINGE 59
Query: 110 SMKGLTHKESLAILK---RGPPVEITLIK 135
++ G H + LK + + LI+
Sbjct: 60 NIVGWRHYDVAKKLKELKKEELFTMKLIE 88
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 89.3 bits (222), Expect = 8e-22
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
+ V L R+ +S+GI+++G D + I V +I G+ A DGR++ D+IL
Sbjct: 12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIK 135
++ +++G+ + + +L+ G PV + LI+
Sbjct: 72 VDDVNVQGMAQSDVVEVLRNAGNPVRLLLIR 102
Score = 87.0 bits (216), Expect = 6e-21
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFG--DQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
VE+ KD + LG S+ G +D + VK + G A +G+++ D+IL +++
Sbjct: 15 SVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDD 74
Query: 186 VPVTEMSRIEAWSLLKK 202
V V M++ + +L+
Sbjct: 75 VNVQGMAQSDVVEVLRN 91
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 89.8 bits (223), Expect = 9e-22
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
E +V+HR +G + GG D E I + +++G PAD G L+KGD+ILS
Sbjct: 10 DIPREPRRIVIHRG--STGLGFNIVGGEDGEG--IFISFILAGGPADLSGELRKGDQILS 65
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
+NG ++ +H+++ LK +T+I
Sbjct: 66 VNGVDLRNASHEQAAIALKNAGQ-TVTII 93
Score = 80.2 bits (198), Expect = 2e-18
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
P I + + GLGF++ GG+D + + I GG A+ +G+L+ GD+IL++N
Sbjct: 13 REPRRIVIHRGSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNG 68
Query: 186 VPVTEMSRIEAWSLLKK 202
V + S +A LK
Sbjct: 69 VDLRNASHEQAAIALKN 85
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 89.3 bits (222), Expect = 9e-22
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+EI LIK GLGFS+ GG + GD + V KI GG A K+G+L+ GD++L +N+V
Sbjct: 5 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
Query: 187 PVTEMSRIEAWSLLKK 202
+ E++ EA + LK
Sbjct: 65 SLEEVTHEEAVTALKN 80
Score = 87.0 bits (216), Expect = 5e-21
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
++ + L + +G ++AGG + I V K+I G A +DG+LQ GD++L+
Sbjct: 3 KIMEIKLIKG--PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 60
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+N S++ +TH+E++ LK V + + K +
Sbjct: 61 VNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 88.9 bits (221), Expect = 1e-21
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
+ V + + G ++ GG +Y+ ++ V ++ PA R+GR++ GD+I+ ING
Sbjct: 10 FDYFTVDMEKG--AKGFGFSIRGGREYKM-DLYVLRLAEDGPAIRNGRMRVGDQIIEING 66
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKD 136
+S + +TH ++ ++K G V + L +
Sbjct: 67 ESTRDMTHARAIELIKSGGRRVRLLLKRG 95
Score = 87.8 bits (218), Expect = 3e-21
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ + K G GFS+ GG++ L V ++ G A +NG+++ GD+I+ IN
Sbjct: 13 FTVDMEKGAKGFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGEST 69
Query: 189 TEMSRIEAWSLLKK 202
+M+ A L+K
Sbjct: 70 RDMTHARAIELIKS 83
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 89.4 bits (222), Expect = 1e-21
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
EI L + +GLGF++ GG D + D + V +I G A +G+L+ GD+IL++
Sbjct: 16 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N + + +A L +
Sbjct: 76 NGQDLKNLLHQDAVDLFRN 94
Score = 87.1 bits (216), Expect = 7e-21
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
+ L R + +G + GG+D + I V ++ A DGRLQ+GD+ILS
Sbjct: 17 TEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILS 74
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
+NG+ +K L H++++ + + G V + +
Sbjct: 75 VNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHR 106
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 89.4 bits (222), Expect = 1e-21
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYE------SKEITVHKVISGTPADRDGRLQKG 100
G+ + S VV+HR G + + + + ++I G+PADR +L+ G
Sbjct: 7 GSLQTSDVVIHRK-ENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65
Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
DRIL++NG+S+ + H + + ++K G V + +I
Sbjct: 66 DRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQ 102
Score = 74.4 bits (183), Expect = 2e-16
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFG----DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
++ + + + G GF + + P P + +I G A++ +LK GD IL
Sbjct: 11 TSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILA 70
Query: 183 INNVPVTEMSRIEAWSLLKK 202
+N + M + L+K
Sbjct: 71 VNGQSIINMPHADIVKLIKD 90
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 88.5 bits (220), Expect = 1e-21
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
EI L + +GLGF++ GG D + D + V +I G A +G+L+ GD+IL++N
Sbjct: 8 EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67
Query: 186 VPVTEMSRIEAWSLLKK 202
+ + +A L +
Sbjct: 68 QDLKNLLHQDAVDLFRN 84
Score = 87.0 bits (216), Expect = 5e-21
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDR 102
+ L R + +G + GG+D + I V ++ A DGRLQ+GD+
Sbjct: 4 YLVTEEEINLTRG--PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDK 61
Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITL 133
ILS+NG+ +K L H++++ + + G V + +
Sbjct: 62 ILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 89.0 bits (221), Expect = 1e-21
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSD-----YESKEITVHKVISGTPADRDGRLQKGD 101
G E+ V L +D +GI++ G E I V V G A RDGR+Q D
Sbjct: 1 GHMELFPVELEKD--SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVND 58
Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
++ ++G S+ G+T + ++L+ V + ++ G
Sbjct: 59 LLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPG 97
Score = 81.3 bits (201), Expect = 7e-19
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 129 VEITLIKDGAGLGFSLEGGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+ L KD GLG S+ G D + VK + GG A ++G+++ D ++ ++
Sbjct: 6 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDG 65
Query: 186 VPVTEMSRIEAWSLLKK 202
+ +++ A S+L+
Sbjct: 66 TSLVGVTQSFAASVLRN 82
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 88.6 bits (220), Expect = 2e-21
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 38 GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTP 90
G P P ++ V L ++ NS+GI++ D I V VI
Sbjct: 1 GSSP----PKPGDIFEVELAKN--DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGA 54
Query: 91 ADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
A+ DGR+ KGDR+L++NG S++G THK+++ L+ G V + L K
Sbjct: 55 AESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKG 101
Score = 80.1 bits (198), Expect = 2e-18
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 126 GPPVEITLIKDGAGLGFSL-----EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEI 180
G E+ L K+ LG S+ +GG ++ + VK + G AE +G++ GD +
Sbjct: 8 GDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 181 LTINNVPVTEMSRIEAWSLLKK 202
L +N V + + +A L+
Sbjct: 68 LAVNGVSLEGATHKQAVETLRN 89
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 87.9 bits (218), Expect = 4e-21
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+G + TL K G GF++ GG + D+ L VK + G A ++G+++ GD I+ IN
Sbjct: 17 KGTFLSTTLKKSNMGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 185 NVPVTEMSRIEAWSLLKKLNDGTI 208
V V + + L + + G
Sbjct: 74 EVCVLGHTHADVVKLFQSVPIGQS 97
Score = 85.5 bits (212), Expect = 3e-20
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
L + G T+ GG + + + V VI PA +DG+++ GD I+ IN
Sbjct: 19 TFLSTTLKKS--NMGFGFTIIGGDE-PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75
Query: 110 SMKGLTHKESLAILKR---GPPVEITLIKD 136
+ G TH + + + + G V + L +
Sbjct: 76 CVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 88.3 bits (219), Expect = 4e-21
Identities = 23/92 (25%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 37 EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE---ITVHKVISGTPADR 93
E C +L + + ++++ + D +G++L G E+ I + +I G A +
Sbjct: 11 EPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFK 70
Query: 94 DGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
DGRL+ D+++++NG+++ G ++ E++ L+R
Sbjct: 71 DGRLRMNDQLIAVNGETLLGKSNHEAMETLRR 102
Score = 85.6 bits (212), Expect = 4e-20
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 128 PVEITLIKDG-AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+EI L G AGLG SL+G K G D + +K I GG A K+G+L+ D+++ +N
Sbjct: 26 TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85
Query: 186 VPVTEMSRIEAWSLLKK 202
+ S EA L++
Sbjct: 86 ETLLGKSNHEAMETLRR 102
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 87.0 bits (216), Expect = 5e-21
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
G+ + V + + P +G ++ GGS++ I V KV G+ A+R G L GD+I
Sbjct: 6 SGSDIIHSVRVEKS-PAGRLGFSVRGGSEH-GLGIFVSKVEEGSSAERAG-LCVGDKITE 62
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDGAG 139
+NG S++ T ++ +L + + + + G+G
Sbjct: 63 VNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGSG 96
Score = 73.5 bits (181), Expect = 3e-16
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+ + K LGFS+ GG + + V K+ G AE+ G L GD+I +N
Sbjct: 9 DIIHSVRVEKSPAGRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVN 64
Query: 185 NVPVTEMSRIEAWSLLKK 202
+ + + A +L
Sbjct: 65 GLSLESTTMGSAVKVLTS 82
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 88.0 bits (218), Expect = 5e-21
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
V V L + +G + + + +I G A++ G +Q GD IL++N +
Sbjct: 8 NVISVRLFKR-KVGGLGFLVKERVSKPP--VIISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 110 SMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTV 159
+ L++ +L +L+ ++ GF+ P T+
Sbjct: 65 PLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTI 114
Score = 81.8 bits (202), Expect = 7e-19
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + L K GLGF ++ P P+ + + GG AE++G ++AGD IL +N+ P
Sbjct: 10 ISVRLFKRKVGGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65
Query: 188 VTEMSRIEAWSLLKK 202
+ ++S A +L+
Sbjct: 66 LVDLSYDSALEVLRG 80
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 87.4 bits (217), Expect = 5e-21
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGD 101
+ + + + PG +GI++ GG+ + I + KV A RDGRL+ G
Sbjct: 9 GLRELCIQKA-PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67
Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
R+L +N +S+ GLTH E++ +L+ G + + +
Sbjct: 68 RLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCD 102
Score = 78.6 bits (194), Expect = 6e-18
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 130 EITLIK-DGAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
E+ + K G LG S+ GG G D+ + + K+ G A ++G+L+ G +L
Sbjct: 12 ELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 183 INNVPVTEMSRIEAWSLLKK 202
+N + ++ EA LL+
Sbjct: 72 VNQQSLLGLTHGEAVQLLRS 91
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 87.0 bits (216), Expect = 6e-21
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE----ITVHKVISGTPADRDGRLQKGDRILS 105
+ +VL R + +G ++AGG D I + K+I G A DGRL D +L
Sbjct: 4 KYEEIVLERG--NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
+N + + H ++ LK GP V + + +
Sbjct: 62 VNEVDVSEVVHSRAVEALKEAGPVVRLVVRRR 93
Score = 85.5 bits (212), Expect = 2e-20
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 130 EITLIKDGAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
EI L + +GLGFS+ GG D+P D + + KI GG A +G+L D +L +N V
Sbjct: 7 EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 188 VTEMSRIEAWSLLKK 202
V+E+ A LK+
Sbjct: 67 VSEVVHSRAVEALKE 81
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 87.5 bits (217), Expect = 7e-21
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+G + L K G GF++ GG + D+ L +K + G A +G+++ GD I+++
Sbjct: 15 LKGKFIHTKLRKSSRGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
Query: 184 NNVPVTEMSRIEAWSLLKKLNDG 206
N+ V + + + + + G
Sbjct: 72 NDTCVLGHTHAQVVKIFQSIPIG 94
Score = 85.6 bits (212), Expect = 3e-20
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
+ L + G G T+ GG + + + + ++ PA DG+++ GD I+S
Sbjct: 14 ELKGKFIHTKLRKSSRG--FGFTVVGGDEPDEF-LQIKSLVLDGPAALDGKMETGDVIVS 70
Query: 106 INGKSMKGLTHKESLAILKR---GPPVEITLIKD 136
+N + G TH + + I + G V++ L +
Sbjct: 71 VNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRG 104
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 91.3 bits (226), Expect = 9e-21
Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 49/200 (24%)
Query: 25 QQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHK 84
+ + + P L + V + + +GI++ GG + + I + K
Sbjct: 52 PEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKA-DAGGLGISIKGGRENKMP-ILISK 109
Query: 85 VISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR------------------- 125
+ G AD+ L GD ILS+NG+ + TH E++ LK+
Sbjct: 110 IFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYF 169
Query: 126 --------------------------GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTV 159
GP L + + +P +P +
Sbjct: 170 KNSAGGTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYL 229
Query: 160 KKIFTGGCAEKNGQLKAGDE 179
+ G L+A DE
Sbjct: 230 EICAADGQDA--VFLRAKDE 247
Score = 70.5 bits (172), Expect = 1e-13
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 128 PVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+T+ K A GLG S++GG+++ P+ + KIF G A++ L GD IL++N
Sbjct: 78 RRRVTVRKADAGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGE 134
Query: 187 PVTEMSRIEAWSLLKK 202
++ + EA LKK
Sbjct: 135 DLSSATHDEAVQALKK 150
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 86.8 bits (215), Expect = 1e-20
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESK-EITVHKVISGTPADRDGRLQKGDRILSING 108
E+ V L+R + +G+T+ +D E I + ++ + A +DGR+++GDRI+ ING
Sbjct: 19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING 78
Query: 109 KSMKGLTHKESLAILKRGPPVEITLIKD 136
++ +L + + + +
Sbjct: 79 IEVQNREEAVALLTSEENKNFSLLIARP 106
Score = 71.8 bits (176), Expect = 2e-15
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 130 EITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
E+ L + LG ++ D D + + +I A K+G+++ GD I+ IN +
Sbjct: 22 EVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80
Query: 188 VTEMSRIEAWSLLKKLNDGTIQ 209
V EA +LL +
Sbjct: 81 VQNRE--EAVALLTSEENKNFS 100
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 86.4 bits (214), Expect = 1e-20
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
V V L + +G + + + +I G A++ G +Q GD IL++N +
Sbjct: 2 VISVRLFKR-KVGGLGFLVKERVS--KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58
Query: 111 MKGLTHKESLAILKR-GPPVEITLI 134
+ L++ +L +L+ + LI
Sbjct: 59 LVDLSYDSALEVLRGIASETHVVLI 83
Score = 83.7 bits (207), Expect = 1e-19
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + L K GLGF ++ P P+ + + GG AE++G ++AGD IL +N+ P
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58
Query: 188 VTEMSRIEAWSLLKK 202
+ ++S A +L+
Sbjct: 59 LVDLSYDSALEVLRG 73
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 85.9 bits (213), Expect = 1e-20
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE--ITVHKVISGTPADRDGRLQKGDRILSIN 107
E+ V L + N +G+++ + I V V+ G AD DGRL GD++LS++
Sbjct: 11 EIITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD 67
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
G+S+ GL+ + + ++ R V + + K GA
Sbjct: 68 GRSLVGLSQERAAELMTRTSSVVTLEVAKQGA 99
Score = 82.4 bits (204), Expect = 3e-19
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ +TL K G+G S+ K + + VK + GG A+ +G+L AGD++L+++ +
Sbjct: 13 ITVTLKKQN-GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSL 71
Query: 189 TEMSRIEAWSLLKK 202
+S+ A L+ +
Sbjct: 72 VGLSQERAAELMTR 85
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 85.1 bits (211), Expect = 3e-20
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
V + L + GA GF+L+GG + +PLTV KI GG A + +++ GDE++ IN P
Sbjct: 13 VPVQL-QGGAPWGFTLKGGLEH---CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTP- 67
Query: 189 TEMSRIEAWSLLKKLND 205
SR EA L+K
Sbjct: 68 LYGSRQEALILIKGSFR 84
Score = 74.7 bits (184), Expect = 9e-17
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+ + V L G G TL GG ++ + +TV K+ G A +++ GD +++I
Sbjct: 8 GSFQYVPVQLQG---GAPWGFTLKGGLEH-CEPLTVSKIEDGGKAALSQKMRTGDELVNI 63
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
NG + G + +E+L ++K +++ + + +G
Sbjct: 64 NGTPLYG-SRQEALILIKGSFRILKLIVRRRNSG 96
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 85.1 bits (211), Expect = 3e-20
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSD-----YESKEITVHKVISGTPADRDGRLQKGDRIL 104
E+ V L +D + +GI++ G E I V V G A RDGR+Q D+I+
Sbjct: 9 ELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIV 66
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
++G S+ G+T + +L+ V + ++
Sbjct: 67 EVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 99
Score = 79.3 bits (196), Expect = 3e-18
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 129 VEITLIKDGAGLGFSLEG---GKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
+ L KD GLG S+ G G D+ + VK + GG A+++G+++ D+I+ ++
Sbjct: 11 FPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDG 70
Query: 186 VPVTEMSRIEAWSLLKK 202
+ + +++ A ++L+
Sbjct: 71 ISLVGVTQNFAATVLRN 87
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 85.1 bits (211), Expect = 3e-20
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E V L + G +G++L+ T+ +I G + D +LQ+GD I NG
Sbjct: 2 EKFNVDLMKK-AGKELGLSLSPNE----IGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56
Query: 110 SMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+++GL + A+ K V + + + G
Sbjct: 57 ALEGLPFQVCYALFKGANGKVSMEVTRPKPG 87
Score = 74.0 bits (182), Expect = 2e-16
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ L+K G LG SL + + + G E + +L+ GD I N
Sbjct: 4 FNVDLMKKAGKELGLSLSPNEIGCT------IADLIQGQYPEIDSKLQRGDIITKFNGDA 57
Query: 188 VTEMSRIEAWSLLKKLND 205
+ + ++L K N
Sbjct: 58 LEGLPFQVCYALFKGANG 75
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 84.7 bits (210), Expect = 3e-20
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ EV +V L R +G ++ GGS++ I V V G+ A+++G L+ GD+IL +N
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEH-GVGIYVSLVEPGSLAEKEG-LRVGDQILRVN 63
Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIKDG 137
KS+ +TH E++ LK + +++ G
Sbjct: 64 DKSLARVTHAEAVKALKGSKKLVLSVYSAG 93
Score = 75.8 bits (187), Expect = 4e-17
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
V + K GLGFS+ GG + G + V + G AEK G L+ GD+IL +N+ +
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEHGVG---IYVSLVEPGSLAEKEG-LRVGDQILRVNDKSL 67
Query: 189 TEMSRIEAWSLLKK 202
++ EA LK
Sbjct: 68 ARVTHAEAVKALKG 81
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 84.8 bits (210), Expect = 4e-20
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 39 GCPSLLIPGTSEVSVVVLHRD-----LPGNSVGITLAGGSDYESKE----ITVHKVISGT 89
G + + + RD + GN +GI + GG + + K++ G
Sbjct: 1 GSSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGG 60
Query: 90 PADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
A++ G+L +G ++L NG + T++E +I+ + EI + D
Sbjct: 61 SAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLD 108
Score = 84.0 bits (208), Expect = 1e-19
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 127 PPVEITLIKD-------GAGLGFSLEGGKDSPF--GDQPLTVKKIFTGGCAEKNGQLKAG 177
P I + +D G GLG + GGK+ P G+ + KI GG AE+ G+L G
Sbjct: 12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
++L N +P+T + E S++ +
Sbjct: 72 MQVLEWNGIPLTSKTYEEVQSIISQ 96
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 83.9 bits (208), Expect = 7e-20
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
E +V+HR +G + GG E I + +++G PAD G L+KGD+ILS
Sbjct: 7 DIPREPRRIVIHRG--STGLGFNIVGGEXGEG--IFISFILAGGPADLSGELRKGDQILS 62
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLI 134
+NG ++ +H+++ LK +T+I
Sbjct: 63 VNGVDLRNASHEQAAIALKNAGQ-TVTII 90
Score = 77.3 bits (191), Expect = 1e-17
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
P I + + GLGF++ GG+ + + I GG A+ +G+L+ GD+IL++N
Sbjct: 10 REPRRIVIHRGSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNG 65
Query: 186 VPVTEMSRIEAWSLLKK 202
V + S +A LK
Sbjct: 66 VDLRNASHEQAAIALKN 82
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 83.3 bits (206), Expect = 9e-20
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 50 EVSVVVLHRDLPGNSVGITL-AGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
V L + G +G+ L G + ++ G PA+R G L GDR+ +ING
Sbjct: 9 NCREVHLEKR-RGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAING 67
Query: 109 KSMKGLTHKESLAILKR-GPPVEITL 133
S+ GL A ++ +TL
Sbjct: 68 TSLVGLPLAACQAAVRETKSQTSVTL 93
Score = 70.2 bits (172), Expect = 4e-15
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 128 PVEITLIKD-GAGLGFSL-EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
E+ L K G GLG +L E G S + + GG AE++G L GD + IN
Sbjct: 10 CREVHLEKRRGEGLGVALVESGWGSLLP--TAVIANLLHGGPAERSGALSIGDRLTAING 67
Query: 186 VPVTEMSRIEAWSLLKKLNDGT 207
+ + + +++ T
Sbjct: 68 TSLVGLPLAACQAAVRETKSQT 89
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 82.3 bits (204), Expect = 1e-19
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V L + G+ LA I V ++ + A RDG +Q+GD +L ING +
Sbjct: 4 VTLVKSRKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 56
Query: 114 LTHKESLAILKR-GPPVEITLIKD 136
++ ++ +++R +++ + +D
Sbjct: 57 MSLTDAKTLIERSKGKLKMVVQRD 80
Score = 65.4 bits (160), Expect = 1e-13
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G V + + G L + VK+I A ++G ++ GD +L IN
Sbjct: 1 GSKVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKING 51
Query: 186 VPVTEMSRIEAWSLLKK 202
MS +A +L+++
Sbjct: 52 TVTENMSLTDAKTLIER 68
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 83.3 bits (206), Expect = 1e-19
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
E V L +D GI ++GG D E I + V+ G PAD G LQ+ DR++
Sbjct: 14 EQYTVTLQKD-SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVV 70
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG M+ + H ++ L++ G I +
Sbjct: 71 MVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 100
Score = 75.9 bits (187), Expect = 5e-17
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+TL KD G G ++ GG+D+P G+ + + + GG A+ G L+ D ++ +
Sbjct: 15 QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N P+ ++ A L+K
Sbjct: 73 NGTPMEDVLHSFAVQQLRK 91
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 82.7 bits (205), Expect = 1e-19
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGK 109
E V L + G +G++L+ T+ +I G + D +LQ+GD I NG
Sbjct: 8 EKFNVDLMKK-AGKELGLSLSPNEI----GCTIADLIQGQYPEIDSKLQRGDIITKFNGD 62
Query: 110 SMKGLTHKESLAILKR-GPPVEITLIK 135
+++GL + S A+ K V + + +
Sbjct: 63 ALEGLPFQVSYALFKGANGKVSMEVTR 89
Score = 71.2 bits (175), Expect = 2e-15
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 129 VEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ L+K G LG SL + + + G E + +L+ GD I N
Sbjct: 10 FNVDLMKKAGKELGLSLSPNEIGCT------IADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 188 VTEMSRIEAWSLLKKLND 205
+ + +++L K N
Sbjct: 64 LEGLPFQVSYALFKGANG 81
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 83.2 bits (206), Expect = 1e-19
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRIL 104
E V LHR PG GI ++GG D + I + V+ G PA+ G+LQ+ DR+
Sbjct: 7 EQHTVTLHRA-PGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVA 63
Query: 105 SINGKSMKGLTHKESLAILKR-GPPVEITL 133
+NG SM + H ++ L++ G +IT+
Sbjct: 64 MVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
Score = 75.1 bits (185), Expect = 1e-16
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 128 PVEITLIKD-GAGLGFSLEGGKDSPF---GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+TL + G G G ++ GG+D+P G+ + + + GG AE GQL+ D + +
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMV 65
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N V + + A L+K
Sbjct: 66 NGVSMDNVEHAFAVQQLRK 84
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 82.8 bits (205), Expect = 2e-19
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+V L + PG +G + GG + I + KVI + A R G LQ+GD++L++N +
Sbjct: 18 IVTLKKP-PGAQLGFNIRGGKASQLG-IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQ 74
Query: 113 GLTHKESLAILKRGPPVEITL 133
+ H +++ ILK + + +
Sbjct: 75 DIEHSKAVEILKTAREISMRV 95
Score = 73.6 bits (181), Expect = 3e-16
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 123 LKRGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
L + P +TL K GA LGF++ GGK S + + K+ A + G L+ GD++L
Sbjct: 11 LTQFLPRIVTLKKPPGAQLGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVL 66
Query: 182 TINNVPVTEMSRIEAWSLLKKLNDGTI 208
+N+V ++ +A +LK + ++
Sbjct: 67 AVNDVDFQDIEHSKAVEILKTAREISM 93
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 84.6 bits (209), Expect = 2e-19
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 10 TSIASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITL 69
T+ S S ++ + ++ + E+ V L +D +GI++
Sbjct: 40 TAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISI 97
Query: 70 AGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
G I V V G A RDGR+Q D ++ ++G S+ G+T + ++L+
Sbjct: 98 IGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
Query: 125 R-GPPVEITLIKD 136
V + ++
Sbjct: 158 NTKGRVRFMIGRE 170
Score = 78.1 bits (192), Expect = 4e-17
Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 26/180 (14%)
Query: 26 QLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKV 85
+ +E + E + IPG SE R + ++ I +
Sbjct: 2 HMDEEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFS-------------- 47
Query: 86 ISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLE 145
+ + D D R + D + + ++ + L + L KD GLG S+
Sbjct: 48 -TYSNEDYDRRNEDVDPMAASAEYELEKRVERLEL--------FPVELEKDSEGLGISII 98
Query: 146 GGK---DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
G D + VK + GG A ++G+++ D ++ ++ + +++ A S+L+
Sbjct: 99 GMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 82.1 bits (203), Expect = 2e-19
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
++ + V L + G+ LA I V ++ + A RDG +Q+GD +L ING
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH-------IFVKEISQDSLAARDGNIQEGDVVLKING 53
Query: 109 KSMKGLTHKESLAILKR-GPPVEITLIKDGAG 139
+ ++ ++ +++R +++ + +D
Sbjct: 54 TVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85
Score = 67.8 bits (166), Expect = 2e-14
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 126 GPPVEITLIK--DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
P ++TL+K G L + VK+I A ++G ++ GD +L I
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKI 51
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N MS +A +L+++
Sbjct: 52 NGTVTENMSLTDAKTLIER 70
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 82.6 bits (204), Expect = 4e-19
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 41 PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKG 100
+L + + V L G S+G+T+ GG++Y I + V G+ A+ G L+ G
Sbjct: 11 STLHLLQGGDEKKVNLVLG-DGRSLGLTIRGGAEY-GLGIYITGVDPGSEAEGSG-LKVG 67
Query: 101 DRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
D+IL +NG+S + H E++ +LK + +T+ G
Sbjct: 68 DQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVG 104
Score = 78.3 bits (193), Expect = 1e-17
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 108 GKSMKGLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGG 166
G S + +L +L+ G ++ L+ DG LG ++ GG + + + + G
Sbjct: 1 GSSGSSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY---GLGIYITGVDPGS 57
Query: 167 CAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
AE +G LK GD+IL +N + EA LLK +
Sbjct: 58 EAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLIL 98
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 81.2 bits (201), Expect = 4e-19
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G P +TL + GF L GG+D PLT+ ++ G A L GD I IN
Sbjct: 7 GMPHSVTLRG-PSPWGFRLVGGRDF---SAPLTISRVHAGSKAALAA-LCPGDLIQAING 61
Query: 186 VPVTEMSRIEAWSLLKKLND 205
M+ +EA + +K +D
Sbjct: 62 ESTELMTHLEAQNRIKGCHD 81
Score = 72.3 bits (178), Expect = 7e-16
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V L P G L GG D+ + +T+ +V +G+ A L GD I +ING+S +
Sbjct: 11 SVTLRGPSPW---GFRLVGGRDFSAP-LTISRVHAGSKAALAA-LCPGDLIQAINGESTE 65
Query: 113 GLTHKESLAILKR-GPPVEITLIKDGA 138
+TH E+ +K + +++ +
Sbjct: 66 LMTHLEAQNRIKGCHDHLTLSVSSGPS 92
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 80.4 bits (199), Expect = 7e-19
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V+L + G+ L I V ++ A +DG L +GD IL ING +
Sbjct: 4 VLLMKSRANEEYGLRLGSQ-------IFVKEMTRTGLATKDGNLHEGDIILKINGTVTEN 56
Query: 114 LTHKESLAILKR-GPPVEITLIKDGAG 139
++ ++ ++++ +++ +++D
Sbjct: 57 MSLTDARKLIEKSRGKLQLVVLRDLEH 83
Score = 72.0 bits (177), Expect = 7e-16
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ + L+K A + L G + VK++ G A K+G L GD IL IN
Sbjct: 2 IGVLLMKSRANEEYGLRLG-------SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVT 54
Query: 189 TEMSRIEAWSLLKK 202
MS +A L++K
Sbjct: 55 ENMSLTDARKLIEK 68
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 80.1 bits (198), Expect = 1e-18
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
P E+ V L++D G ++A G K + V + P D G L+ DR+L
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLL--EKGVYVKNIRPAGPGDLGG-LKPYDRLLQ 58
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
+N + + ++ G +++ + ++
Sbjct: 59 VNHVRTRDFDCCLVVPLIAESGNKLDLVISRN 90
Score = 60.8 bits (148), Expect = 6e-12
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 128 PVEITLIKD--GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
++TL KD GFS+ G + VK I G + G LK D +L +N+
Sbjct: 7 LHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 186 VPVTEMSRIEAWSLLKK 202
V + L+ +
Sbjct: 62 VRTRDFDCCLVVPLIAE 78
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 81.0 bits (200), Expect = 1e-18
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 50 EVSVVVLHRDLPGNSVGITLAGGSDYESKE--------ITVHKVISGTPADRDGRLQKGD 101
V L + +G + GS I + +++ G A G L D
Sbjct: 29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVND 88
Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
+L +NG + G + + ++ + IT+
Sbjct: 89 EVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122
Score = 71.8 bits (176), Expect = 2e-15
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFG------DQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
V + LGF + G + + ++ GG A+ G L DE+L
Sbjct: 33 VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLE 92
Query: 183 INNVPVTEMSRIEAWSLLKK 202
+N + V+ S + ++
Sbjct: 93 VNGIEVSGKSLDQVTDMMIA 112
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 83.1 bits (205), Expect = 1e-18
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 12 IASSTSLISQQELQQLIDESNQSL---DEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGIT 68
+ +I++ L D + + L + ++ V L R +G++
Sbjct: 43 VGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRL-HPEGLGLS 101
Query: 69 LAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP 128
+ GG ++ + + +I G AD G LQ GD I+ ING S+ TH+E + +++
Sbjct: 102 VRGGLEFGCG-LFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKT 159
Query: 129 VEITLIKDG 137
V I + G
Sbjct: 160 VSIKVRHIG 168
Score = 74.2 bits (182), Expect = 1e-15
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 71 GGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS-------------MKGLTHK 117
+ ++++ ++ V+ D + GD L IN S +K
Sbjct: 15 FLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEY 74
Query: 118 ESLAILKRGPPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
+ L + E+ L + GLG S+ GG + L + + GG A+ G L+
Sbjct: 75 DQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQV 130
Query: 177 GDEILTINNVPVTEMSRIEAWSLLK 201
GDEI+ IN ++ + E +L++
Sbjct: 131 GDEIVRINGYSISSCTHEEVINLIR 155
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 79.3 bits (196), Expect = 2e-18
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
++ L + A GF L+GGKD + PL++ ++ GG A + G + GD +L+I+
Sbjct: 5 FKVVL-EGPAPWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENA 59
Query: 189 TEMSRIEAWSLLKK 202
++ IEA + ++
Sbjct: 60 GSLTHIEAQNKIRA 73
Score = 72.0 bits (177), Expect = 6e-16
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ + VVL P G L GG D+ +++ ++ G A + G + GD +LSI+
Sbjct: 1 SMDSFKVVLEGPAP---WGFRLQGGKDFNVP-LSISRLTPGGKAAQAG-VAVGDWVLSID 55
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITLIKDGAGL 140
G++ LTH E+ ++ G + + L + L
Sbjct: 56 GENAGSLTHIEAQNKIRACGERLSLGLSRAITSL 89
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 79.6 bits (197), Expect = 2e-18
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDR 102
+ E + + R +GI++AGG + I + +V PA R G ++ GD+
Sbjct: 1 SMEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDK 57
Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
+L +NG +++G H E++ L+ G V++ + ++
Sbjct: 58 LLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 92
Score = 76.6 bits (189), Expect = 2e-17
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+ +T+++ GLG S+ GGK S D+ + + ++ G A + G ++ GD++L +N
Sbjct: 4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + EA L+
Sbjct: 63 GVALQGAEHHEAVEALRG 80
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 79.8 bits (197), Expect = 3e-18
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
++ V + +G +++ G + I + V G+ + G L+ GD+I+
Sbjct: 11 NRENKEKKVFISLV-GSRGLGCSISSGPIQKPG-IFISHVKPGSLSAEVG-LEIGDQIVE 67
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+NG L HKE++ +LK + I+++
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSSRSLTISIVAAA 99
Score = 67.1 bits (164), Expect = 7e-14
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 124 KRGPPVEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
+ ++ + G+ GLG S+ G + + + G + + G L+ GD+I+
Sbjct: 12 RENKEKKVFISLVGSRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVE 67
Query: 183 INNVPVTEMSRIEAWSLLKKLNDGTI 208
+N V + + EA ++LK TI
Sbjct: 68 VNGVDFSNLDHKEAVNVLKSSRSLTI 93
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 79.9 bits (197), Expect = 3e-18
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 38 GGCPSLLIPGTS----EVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR 93
GG +L G + +V + G+SVG+ LAGG+D I V V+ +PA +
Sbjct: 13 GGTENLYFQGHMILRPSMKLVKFRK---GDSVGLRLAGGNDVG---IFVAGVLEDSPAAK 66
Query: 94 DGRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
+G L++GD+IL +N + +E++ L P E+T++
Sbjct: 67 EG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107
Score = 69.8 bits (171), Expect = 9e-15
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
P +++ + G +G L GG D + V + A K G L+ GD+IL +NN
Sbjct: 27 RPSMKLVKFRKGDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNN 80
Query: 186 VPVTEMSRIEAWSLLKKLNDG 206
V T + R EA L L G
Sbjct: 81 VDFTNIIREEAVLFLLDLPKG 101
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 78.5 bits (194), Expect = 3e-18
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + + A GF + GG+D P+ V K+ G A+ L+ GD I+ IN
Sbjct: 3 ALTVDV-AGPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGES 57
Query: 188 VTEMSRIEAWSLLKK 202
M EA S +++
Sbjct: 58 AEGMLHAEAQSKIRQ 72
Score = 70.0 bits (172), Expect = 3e-15
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G + GG D+ + I V KV A L+ GD I++ING+S +G+ H E+ + +++
Sbjct: 15 GFRITGGRDFHTP-IMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 126 -GPPVEITLIKDGA 138
P+ + L + +
Sbjct: 73 SPSPLRLQLDRITS 86
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 79.4 bits (196), Expect = 3e-18
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 34 SLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR 93
DE S+ G V +V + + +G T+ D + + +++ G A++
Sbjct: 9 ITDERVYESIGHYGGETVKIVRIEKA-RDIPLGATVRNEMD----SVIISRIVKGGAAEK 63
Query: 94 DGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIK 135
G L +GD +L ING ++G E +L + LI
Sbjct: 64 SGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIP 106
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 130 EITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ + K LG ++ D + + +I GG AEK+G L GDE+L IN + +
Sbjct: 28 IVRIEKARDIPLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEI 81
Query: 189 TEMSRIEAWSLLKKLND 205
E + LL ++
Sbjct: 82 RGKDVNEVFDLLSDMHG 98
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 79.5 bits (196), Expect = 4e-18
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 13 ASSTSLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGG 72
SS S S+ E +QL +V L G +G+ +
Sbjct: 1 GSSGSSGSKNEKEQLSKAKASVSSLN-----------KVIQTKLTVGNLG--LGLVVIQN 47
Query: 73 SDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK---RGPPV 129
Y + + +I+ A DG LQ GD ++S+ ++ G T +E L +L+ G +
Sbjct: 48 GPY----LQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL 103
Query: 130 EITLIKDGAGLGFSLEGGKDS 150
+I + + + S
Sbjct: 104 QIKAYRGFLEIPQEWQDSGPS 124
Score = 78.0 bits (192), Expect = 2e-17
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFT 164
S K+ K K ++ ++ L GLG + L + +
Sbjct: 5 SSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQN------GPYLQISHLIN 58
Query: 165 GGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
G A +G L+ GD ++++ + V + E LL+ + GT+
Sbjct: 59 KGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV 102
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 78.7 bits (194), Expect = 5e-18
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRIL 104
+ ++ + D G + GG D + + V +V GTPAD RL +GD+++
Sbjct: 13 IPHDNLVLIRMKPD-ENGRFGFNVKGGYDQKMP-VIVSRVAPGTPADLCVPRLNEGDQVV 70
Query: 105 SINGKSMKGLTHKESLAILKRGP 127
ING+ + TH + + +K
Sbjct: 71 LINGRDIAEHTHDQVVLFIKASC 93
Score = 73.3 bits (180), Expect = 4e-16
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 126 GPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILTI 183
V I + D GF+++GG D P+ V ++ G A+ +L GD+++ I
Sbjct: 16 DNLVLIRMKPDENGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N + E + + +K
Sbjct: 73 NGRDIAEHTHDQVVLFIKA 91
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 77.8 bits (192), Expect = 6e-18
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+ V ++ L ++ +G T+ ++ I V +++ G ADR G + GD + +
Sbjct: 1 GSDSVKIIRLVKN--REPLGATIKKDE--QTGAIIVARIMRGGAADRSGLIHVGDELREV 56
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLI 134
NG ++ +E + IL + + +I
Sbjct: 57 NGIPVEDKRPEEIIQILAQSQGAITFKII 85
Score = 72.4 bits (178), Expect = 5e-16
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 131 ITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
I L+K+ LG +++ + + + V +I GG A+++G + GDE+ +N +PV +
Sbjct: 8 IRLVKNREPLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVNGIPVED 63
Query: 191 MSRIEAWSLLKKLND 205
E +L +
Sbjct: 64 KRPEEIIQILAQSQG 78
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 78.2 bits (193), Expect = 7e-18
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G ++L+ A GF L+GGKD + PLT+ + GG A + ++ GD +L+I+
Sbjct: 4 GSSGSVSLVG-PAPWGFRLQGGKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDG 58
Query: 186 VPVTEMSRIEAWSLLKK 202
+ M+ +EA + +K
Sbjct: 59 ISAQGMTHLEAQNKIKA 75
Score = 70.5 bits (173), Expect = 4e-15
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G L GG D+ + +T+ + G A + ++ GD +LSI+G S +G+TH E+ +K
Sbjct: 18 GFRLQGGKDF-NMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 126 -GPPVEITLIKDGAG 139
+ +TL + A
Sbjct: 76 CTGSLNMTLQRASAA 90
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 78.2 bits (193), Expect = 9e-18
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----ITVHKVISGTPADRDGRLQKGDRI 103
E + + R +GI++AGG + I + +V PA R G ++ GD++
Sbjct: 14 EEELTLTILRQ--TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKL 70
Query: 104 LSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
L +NG +++G H E++ L+ G V++ + ++
Sbjct: 71 LEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104
Score = 75.8 bits (187), Expect = 5e-17
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSP---FGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
+ +T+++ GLG S+ GGK S D+ + + ++ G A + G ++ GD++L +N
Sbjct: 16 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 74
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + EA L+
Sbjct: 75 GVALQGAEHHEAVEALRG 92
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 77.8 bits (192), Expect = 1e-17
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + L A GF L GG D +QPL + +I G A L GD IL I+
Sbjct: 4 GSSGNVVL-PGPAPWGFRLSGGIDF---NQPLVITRITPGSKAAAAN-LCPGDVILAIDG 58
Query: 186 VPVTEMSRIEAWSLLKK 202
M+ +A +K
Sbjct: 59 FGTESMTHADAQDRIKA 75
Score = 70.5 bits (173), Expect = 4e-15
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+S S V+ G L+GG D+ + + ++ G+ A L GD IL+I
Sbjct: 1 GSSGSSGNVVLPG--PAPWGFRLSGGIDFNQP-LVITRITPGSKAAA-ANLCPGDVILAI 56
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGAGL 140
+G + +TH ++ +K + + + + L
Sbjct: 57 DGFGTESMTHADAQDRIKAASYQLCLKIDRAETRL 91
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 77.0 bits (190), Expect = 1e-17
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+I L + GF L GGKD +QPL + ++ G A L GD I I+
Sbjct: 5 QQIDL-QGPGPWGFRLVGGKDF---EQPLAISRVTPGSKAALAN-LCIGDVITAIDGENT 59
Query: 189 TEMSRIEAWSLLKK 202
+ M+ +EA + +K
Sbjct: 60 SNMTHLEAQNRIKG 73
Score = 65.8 bits (161), Expect = 1e-13
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 52 SVVVLHRDLPGNSV-GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
S+ DL G G L GG D+E + + +V G+ A L GD I +I+G++
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDFEQP-LAISRVTPGSKAAL-ANLCIGDVITAIDGEN 58
Query: 111 MKGLTHKESLAILKR-GPPVEITL 133
+TH E+ +K + +T+
Sbjct: 59 TSNMTHLEAQNRIKGCTDNLTLTV 82
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 76.9 bits (190), Expect = 1e-17
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
++L A GF L+GGKD + PLT+ + GG A + ++ GD +L+I+ +
Sbjct: 5 YSVSL-VGPAPWGFRLQGGKD---FNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINA 59
Query: 189 TEMSRIEAWSLLKK 202
M+ +EA + +K
Sbjct: 60 QGMTHLEAQNKIKG 73
Score = 68.5 bits (168), Expect = 1e-14
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 66 GITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR 125
G L GG D+ +T+ + G A + ++ GD +LSI+G + +G+TH E+ +K
Sbjct: 16 GFRLQGGKDFNMP-LTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 126 -GPPVEITL 133
+ +TL
Sbjct: 74 CTGSLNMTL 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 76.5 bits (189), Expect = 2e-17
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+TL GF L+GGKD + PLT+ +I G A ++ L GD ++ I+ V
Sbjct: 2 AYSVTL-TGPGPWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVN 56
Query: 188 VTEMSRIEAWSLLKK 202
M+ +EA + +K
Sbjct: 57 TDTMTHLEAQNKIKS 71
Score = 67.7 bits (166), Expect = 2e-14
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
V L P G L GG D+ +T+ ++ G+ A + +L +GD +++I+G +
Sbjct: 5 VTLTGPGP---WGFRLQGGKDFNMP-LTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59
Query: 114 LTHKESLAILKR-GPPVEITLIKDG 137
+TH E+ +K + +TL K
Sbjct: 60 MTHLEAQNKIKSASYNLSLTLQKSK 84
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 77.6 bits (191), Expect = 2e-17
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADR-DGRLQKGDRILS 105
+ ++ + D G + GG D + V +V GTPAD RL +GD+++
Sbjct: 12 PHDNLVLIRMKPD-ENGRFGFNVKGGYDQ-KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 106 INGKSMKGLTHKESLAILKRGP 127
ING+ + TH + + +K
Sbjct: 70 INGRDIAEHTHDQVVLFIKASC 91
Score = 72.6 bits (178), Expect = 9e-16
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 125 RGPPVEITLIKD-GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEK-NGQLKAGDEILT 182
V I + D GF+++GG D P+ V ++ G A+ +L GD+++
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 183 INNVPVTEMSRIEAWSLLKK 202
IN + E + + +K
Sbjct: 70 INGRDIAEHTHDQVVLFIKA 89
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 76.2 bits (188), Expect = 3e-17
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + + A GF + GG+D P+ V K+ G AE L+ GD I+ IN
Sbjct: 7 GLTVDV-AGPAPWGFRISGGRDFH---TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQS 61
Query: 188 VTEMSRIEAWSLLKK 202
M EA S +++
Sbjct: 62 AENMLHAEAQSKIRQ 76
Score = 69.6 bits (171), Expect = 6e-15
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G+S S + + G ++GG D+ + I V KV A+ L+ GD I++I
Sbjct: 1 GSSGSSGLTVDVA-GPAPWGFRISGGRDFHTP-IIVTKVTERGKAEAAD-LRPGDIIVAI 57
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLIKDGA 138
NG+S + + H E+ + +++ P+ + L +
Sbjct: 58 NGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG 90
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 75.2 bits (185), Expect = 1e-16
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 38 GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL 97
GG P E V + + +GI++ G I V KV G+ A + G L
Sbjct: 7 GGERRKDRPYVEEPRHVKVQKG--SEPLGISIVSGEK---GGIYVSKVTVGSIAHQAG-L 60
Query: 98 QKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
+ GD++L NG +++ T +++ I+ + IT++
Sbjct: 61 EYGDQLLEFNGINLRSATEQQARLIIGQQCD-TITIL 96
Score = 65.6 bits (160), Expect = 3e-13
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
P + + K LG S+ G+ + V K+ G A + G L+ GD++L N
Sbjct: 17 VEEPRHVKVQKGSEPLGISIVSGEKG-----GIYVSKVTVGSIAHQAG-LEYGDQLLEFN 70
Query: 185 NVPVTEMSRIEAWSLLKKLND 205
+ + + +A ++ + D
Sbjct: 71 GINLRSATEQQARLIIGQQCD 91
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 74.3 bits (183), Expect = 1e-16
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V++ +D + G T++G + + V V G A + G +++GDRI+ +NG +
Sbjct: 11 CVIIQKD--QHGFGFTVSGD-----RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVT 62
Query: 113 GLTHKESLAILKRGPPVEITLIKDGAG 139
+H E + ++K G V +TL+ +G
Sbjct: 63 NSSHLEVVKLIKSGAYVALTLLGSSSG 89
Score = 64.6 bits (158), Expect = 3e-13
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G + + KD G GF++ G + + V+ + GG A K G +K GD I+ +N
Sbjct: 7 GVQRCVIIQKDQHGFGFTVSGDR-------IVLVQSVRPGGAAMKAG-VKEGDRIIKVNG 58
Query: 186 VPVTEMSRIEAWSLLK 201
VT S +E L+K
Sbjct: 59 TMVTNSSHLEVVKLIK 74
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 73.9 bits (182), Expect = 1e-16
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+V ++ +GITL E V +++ G R G L GD I ING S+
Sbjct: 4 LVQFQKN-TDEPMGITLKMN---ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59
Query: 113 GLTHKESLAILKR-GPPVEITLI 134
T ++ +L+ + ++
Sbjct: 60 NQTVEQLQKMLREMRGSITFKIV 82
Score = 60.4 bits (147), Expect = 8e-12
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ K +G +L+ + + V +I GG + G L GDEI IN + V
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNH-----CIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
Query: 189 TEMSRIEAWSLLKKLND 205
+ + +L+++
Sbjct: 59 ANQTVEQLQKMLREMRG 75
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 74.3 bits (182), Expect = 5e-16
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 49 SEVSVVVLHRDLPG--NSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDG 95
S V V +H+ G +G ++ GG D + + I V +V G PA+ G
Sbjct: 22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG 81
Query: 96 RLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLI 134
LQ GD+I+ +NG M +TH ++ L + + L+
Sbjct: 82 -LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119
Score = 68.9 bits (168), Expect = 3e-14
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 122 ILKRGPPVEITLIK----DGAGLGFSLEGGKDSP---------FGDQPLTVKKIFTGGCA 168
+ + + + K + LGFS+ GG D D+ + V ++ GG A
Sbjct: 18 LYFQSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPA 77
Query: 169 EKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTI 208
E G L+ GD+I+ +N +T ++ +A L K ++ +
Sbjct: 78 EIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 72.4 bits (178), Expect = 5e-16
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
V ++ + +GI L E + TV +++ G R G L GD IL
Sbjct: 8 HSGHMVRLIQFEKV-TEEPMGICLKLN---EKQSCTVARILHGGMIHRQGSLHVGDEILE 63
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLI 134
ING ++ + + +K + + +I
Sbjct: 64 INGTNVTNHSVDQLQKAMKETKGMISLKVI 93
Score = 63.5 bits (155), Expect = 9e-13
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 11/96 (11%)
Query: 111 MKGLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAE 169
M H S +++ I K +G L+ Q TV +I GG
Sbjct: 1 MGHHHHHHSGHMVR-----LIQFEKVTEEPMGICLKLN-----EKQSCTVARILHGGMIH 50
Query: 170 KNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
+ G L GDEIL IN VT S + +K+
Sbjct: 51 RQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG 86
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 71.6 bits (176), Expect = 1e-15
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ V + +D G ++ +TV V +G A G+L GD+IL +N
Sbjct: 6 SGVRHTVKIDKDTLLQDYGFHISESLP-----LTVVAVTAGGSAH--GKLFPGDQILQMN 58
Query: 108 GKSMKGLTHKESLAILKR-GPPVEITL 133
+ + L+ + ++ IL+ + IT+
Sbjct: 59 NEPAEDLSWERAVDILREAEDSLSITV 85
Score = 64.7 bits (158), Expect = 3e-13
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
V+I GF + PLTV + GG A G+L GD+IL +NN P
Sbjct: 12 VKIDKDTLLQDYGFHISE-------SLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPA 62
Query: 189 TEMSRIEAWSLLKK 202
++S A +L++
Sbjct: 63 EDLSWERAVDILRE 76
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 71.3 bits (175), Expect = 2e-15
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKGDRILS 105
V + +D +G +++GG I V +V PA LQ GD+I+
Sbjct: 6 RVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQ 60
Query: 106 INGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
NG S + H +++++LK VE+ ++++
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92
Score = 69.0 bits (169), Expect = 1e-14
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+ + + KD LGFS+ GG D + V ++ G A L+ GD+I+
Sbjct: 5 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 61
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N + +A SLLK
Sbjct: 62 NGYSFINIEHGQAVSLLKT 80
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 71.3 bits (175), Expect = 2e-15
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQ 98
+ V + +D +G +++GG I V +V PA LQ
Sbjct: 7 ELAKQEIRVRVEKD---PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 61
Query: 99 KGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLIKD 136
GD+I+ NG S + H +++++LK VE+ ++++
Sbjct: 62 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100
Score = 67.1 bits (164), Expect = 6e-14
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+ + + KD LGFS+ GG D + V ++ G A L+ GD+I+
Sbjct: 13 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQA 69
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N + +A SLLK
Sbjct: 70 NGYSFINIEHGQAVSLLKT 88
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 71.4 bits (175), Expect = 2e-15
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + +G TL G + + VH + A G ++GD I+SI K
Sbjct: 26 SIRFTAE--EGDLGFTLRGNAP-----VQVHFLDPYCSASVAG-AREGDYIVSIQLVDCK 77
Query: 113 GLTHKESLAILKRGPPVEITL 133
LT E + +LK EI +
Sbjct: 78 WLTLSEVMKLLKSFGEDEIEM 98
Score = 70.2 bits (172), Expect = 6e-15
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 122 ILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEIL 181
+ + P I + LGF+L G + P+ V + A G + GD I+
Sbjct: 18 LYFQSMPRSIRFTAEEGDLGFTLRG-------NAPVQVHFLDPYCSASVAG-AREGDYIV 69
Query: 182 TINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
+I V ++ E LLK + I+
Sbjct: 70 SIQLVDCKWLTLSEVMKLLKSFGEDEIE 97
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 71.2 bits (175), Expect = 2e-15
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDGRLQKGD 101
VV + + + G + G + V V+ G ADR G ++KGD
Sbjct: 9 VVRIVKS--ESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGD 65
Query: 102 RILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
RIL +NG +++G THK+ + +++ + +T++
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVL 99
Score = 62.4 bits (152), Expect = 2e-12
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLT---------VKKIFTGGCAEKNGQLKA 176
G P + ++K +G GF++ G + + V + GG A++ G ++
Sbjct: 5 GSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRK 63
Query: 177 GDEILTINNVPVTEMSRIEAWSLLKK 202
GD IL +N V V + + L++
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRA 89
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 69.9 bits (172), Expect = 3e-15
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
V + R G TL+G + + V+ G+PAD G L+ GD+IL++N ++K
Sbjct: 5 SVEVARG--RAGYGFTLSGQAP-----CVLSCVMRGSPADFVG-LRAGDQILAVNEINVK 56
Query: 113 GLTHKESLAILKRGPPVEITLIKDGAG 139
+H++ + ++ + V +I +G G
Sbjct: 57 KASHEDVVKLIGKCSGVLHMVIAEGVG 83
Score = 64.9 bits (159), Expect = 2e-13
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + + AG GF+L G P + + G A+ G L+AGD+IL +N +
Sbjct: 3 VRSVEVARGRAGYGFTLSG-------QAPCVLSCVMRGSPADFVG-LRAGDQILAVNEIN 54
Query: 188 VTEMSRIEAWSLLKK 202
V + S + L+ K
Sbjct: 55 VKKASHEDVVKLIGK 69
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 71.0 bits (174), Expect = 3e-15
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + +G TL G + + VH + A G ++GD I+SI G K
Sbjct: 18 GIHFTVE--EGDLGFTLRGNTP-----VQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCK 69
Query: 113 GLTHKESLAILKRGPPVEITL 133
LT E + +LK E+ +
Sbjct: 70 WLTVSEVMKLLKSFGGEEVEM 90
Score = 65.2 bits (159), Expect = 3e-13
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
PP I + LGF+L G + P+ V + A G K GD I++I
Sbjct: 14 SPPRGIHFTVEEGDLGFTLRG-------NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQG 65
Query: 186 VPVTEMSRIEAWSLLKKLNDGTI 208
V ++ E LLK +
Sbjct: 66 VDCKWLTVSEVMKLLKSFGGEEV 88
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 69.6 bits (171), Expect = 4e-15
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSI 106
G + + +H+D VG G + ++ + A R+G L I I
Sbjct: 1 GAMDPRTITMHKD-STGHVGFIFKNG--------KITSIVKDSSAARNG-LLTEHNICEI 50
Query: 107 NGKSMKGLTHKESLAILKR-GPPVEITLI 134
NG+++ GL + IL G V IT++
Sbjct: 51 NGQNVIGLKDSQIADILSTSGTVVTITIM 79
Score = 56.2 bits (136), Expect = 2e-10
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 128 PVEITLIKDGAG-LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P IT+ KD G +GF + GK + I A +NG L I IN
Sbjct: 5 PRTITMHKDSTGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQ 53
Query: 187 PVTEMSRIEAWSLLKK 202
V + + +L
Sbjct: 54 NVIGLKDSQIADILST 69
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 70.1 bits (172), Expect = 5e-15
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 47 GTSEVS----VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDR 102
G+S S + L ++ G S G +L K + + + A R G + D
Sbjct: 1 GSSGSSGQPRLCYLVKE--GGSYGFSLKTVQ--GKKGVYMTDITPQGVAMRAG-VLADDH 55
Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
++ +NG++++ +H+E + +K+ G V L+
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLV 88
Score = 68.2 bits (167), Expect = 2e-14
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
G P L+K+G GFSL+ + G + + + I G A + G + A D ++ +N
Sbjct: 7 GQPRLCYLVKEGGSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNG 61
Query: 186 VPVTEMSRIEAWSLLKK 202
V + S E +KK
Sbjct: 62 ENVEDASHEEVVEKVKK 78
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 69.8 bits (171), Expect = 6e-15
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE------ITVHKVISGTPAD 92
G L S+ +V + + + G + + K+ +PA
Sbjct: 4 GSSGLSDFSWSQRKLVTVEKQ-DNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAH 62
Query: 93 RDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
G LQ GD + +ING S +G T+K+ + +++ G + I +
Sbjct: 63 CAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
Score = 62.1 bits (151), Expect = 3e-12
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 113 GLTHKESLAILKRGPPVEITLIK-DGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGC 167
G + L+ +T+ K D GF ++ + ++ + + KI
Sbjct: 1 GSSGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSP 60
Query: 168 AEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
A G L+AGD + IN V + + L++
Sbjct: 61 AHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 69.3 bits (170), Expect = 7e-15
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 47 GTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE------ITVHKVISGTPADRDGRLQKG 100
G+ + V+ L + + G + + +E V +V +PA G L G
Sbjct: 1 GSQQRKVLTLEKG-DNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPG 58
Query: 101 DRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
D I S+NG +++G+ H+E + I+K G + + +
Sbjct: 59 DTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
Score = 58.9 bits (143), Expect = 3e-11
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 128 PVEITLIK-DGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
+TL K D GF ++ + + V ++ A+ G L GD I +
Sbjct: 5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIAS 63
Query: 183 INNVPVTEMSRIEAWSLLKK 202
+N + V + E ++K
Sbjct: 64 VNGLNVEGIRHREIVDIIKA 83
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 69.0 bits (169), Expect = 8e-15
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 49 SEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
S++ + + G T+ I V V +G+PA+ +LQ D I++IN
Sbjct: 3 SDMRISINQTPGKSLDFGFTIKWDIP----GIFVASVEAGSPAEF-SQLQVDDEIIAINN 57
Query: 109 KSMKGLTHKESLAILKRGP 127
KE + +
Sbjct: 58 TKFSYNDSKEWEEAMAKAQ 76
Score = 60.1 bits (146), Expect = 1e-11
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 129 VEITLIKDGA-GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ I + GF+++ F V + G AE + L+ DEI+ INN
Sbjct: 7 ISINQTPGKSLDFGFTIKWDIPGIF------VASVEAGSPAEFSQ-LQVDDEIIAINNTK 59
Query: 188 VTEMSRIEAWSLLKK 202
+ E + K
Sbjct: 60 FSYNDSKEWEEAMAK 74
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 68.5 bits (168), Expect = 1e-14
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ L + G L + V G+PA R G L+ DR++ +NG++++
Sbjct: 7 LCHLRKG--PQGYGFNLHSDKSRPG--QYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVE 61
Query: 113 GLTHKESLAILKR-GPPVEITLIKDGAGL 140
GL H E +A +K + ++ L
Sbjct: 62 GLRHAEVVASIKAREDEARLLVVGPSTRL 90
Score = 61.5 bits (150), Expect = 3e-12
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P L K G GF+L K P ++ + G A ++G L+A D ++ +N
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSRP----GQYIRSVDPGSPAARSG-LRAQDRLIEVNGQN 59
Query: 188 VTEMSRIEAWSLLKK 202
V + E + +K
Sbjct: 60 VEGLRHAEVVASIKA 74
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 68.6 bits (168), Expect = 1e-14
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
P E + + R + G T+ S + V V SG PA+R G LQ+ D +L
Sbjct: 11 PENGEKLQITIRRG--KDGFGFTICCDSP-----VRVQAVDSGGPAERAG-LQQLDTVLQ 62
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITLIKDGAG 139
+N + ++ E ++ P I L+ +G
Sbjct: 63 LNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96
Score = 67.4 bits (165), Expect = 4e-14
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
+ G ++IT+ + G GF++ D P+ V+ + +GG AE+ G L+ D +L +
Sbjct: 12 ENGEKLQITIRRGKDGFGFTICC-------DSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N PV +E ++
Sbjct: 64 NERPVEHWKCVELAHEIRS 82
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 68.1 bits (167), Expect = 2e-14
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
VVV+ + N G L G + K + + G+PA+ G L+ D ++++NGKS++
Sbjct: 8 VVVIKKG--SNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVE 62
Query: 113 GLTHKESLAILKRGPPVEITLI 134
L H + ++++G + TL+
Sbjct: 63 ALDHDGVVEMIRKGGD-QTTLL 83
Score = 63.5 bits (155), Expect = 9e-13
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P + + K G GF L G + +K I G AE G LK D ++ +N
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKS 60
Query: 188 VTEMSRIEAWSLLKK 202
V + +++K
Sbjct: 61 VEALDHDGVVEMIRK 75
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 68.2 bits (167), Expect = 2e-14
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 119 SLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGD 178
S + + +T++K G GF++ VK+I L GD
Sbjct: 2 SSGSSGQAELMTLTIVKGAQGFGFTIADSPTGQR------VKQILDIQGC---PGLCEGD 52
Query: 179 EILTINNVPVTEMSRIEAWSLLKKLNDG 206
I+ IN V +S E +LK G
Sbjct: 53 LIVEINQQNVQNLSHTEVVDILKDCPIG 80
Score = 66.3 bits (162), Expect = 9e-14
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
G +E+ + + + G T+A +V L +GD I+
Sbjct: 6 SGQAELMTLTIVKG--AQGFGFTIADSPTG-------QRVKQILDIQGCPGLCEGDLIVE 56
Query: 106 INGKSMKGLTHKESLAILKRGPP-VEITLI 134
IN ++++ L+H E + ILK P E +LI
Sbjct: 57 INQQNVQNLSHTEVVDILKDCPIGSETSLI 86
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 68.2 bits (167), Expect = 2e-14
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 47 GTSEVS--VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
G+S S VVV+ + N G L G + K + + G+PA+ G L+ D ++
Sbjct: 1 GSSGSSGRVVVIKKG--SNGYGFYLRAGPEQ--KGQIIKDIEPGSPAEAAG-LKNNDLVV 55
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITLI 134
++NGKS++ L H + ++++G + TL+
Sbjct: 56 AVNGKSVEALDHDGVVEMIRKGGD-QTTLL 84
Score = 63.2 bits (154), Expect = 1e-12
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 127 PPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
+ + K G GF L G + +K I G AE G LK D ++ +N
Sbjct: 6 SGRVVVIKKGSNGYGFYLRAGPEQK----GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGK 60
Query: 187 PVTEMSRIEAWSLLKK 202
V + +++K
Sbjct: 61 SVEALDHDGVVEMIRK 76
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 67.4 bits (165), Expect = 3e-14
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKE-ITVHKVISGTPADRDGRLQKGDRILSINGKSM 111
+ L + G L + + + +V G PA + G +Q GDR++++ G+S+
Sbjct: 6 CLHLEKG--PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESV 62
Query: 112 KGLTHKESLAILKR-GPPVEITLI 134
+GL H+E+++ ++ G V +T++
Sbjct: 63 EGLGHEETVSRIQGQGSCVSLTVV 86
Score = 65.4 bits (160), Expect = 1e-13
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P + L K G GF L K G + ++ G A+K G ++AGD ++ +
Sbjct: 4 PRCLHLEKGPQGFGFLLREEK-GLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGES 61
Query: 188 VTEMSRIEAWSLLKK 202
V + E S ++
Sbjct: 62 VEGLGHEETVSRIQG 76
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 67.3 bits (165), Expect = 3e-14
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ L + N G L G + V G+PA++ G L GDR++ +NG++++
Sbjct: 6 LCCLEKG--PNGYGFHLHGEKG--KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVE 60
Query: 113 GLTHKESLAILKR-GPPVEITLIK 135
TH++ ++ ++ V + ++
Sbjct: 61 KETHQQVVSRIRAALNAVRLLVVD 84
Score = 66.9 bits (164), Expect = 4e-14
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTIN 184
R P L K G GF L G K ++ + G AEK G L AGD ++ +N
Sbjct: 1 RMLPRLCCLEKGPNGYGFHLHGEKGKL----GQYIRLVEPGSPAEKAG-LLAGDRLVEVN 55
Query: 185 NVPVTEMSRIEAWSLLKK 202
V + + + S ++
Sbjct: 56 GENVEKETHQQVVSRIRA 73
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 67.4 bits (165), Expect = 4e-14
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYE------SKEITVHKVISGTPADRDGRLQKGDRILSI 106
+V+H G G +L Y + V V G+PA G L+ GD I I
Sbjct: 5 PIVIHSS--GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHI 61
Query: 107 NGKSMKGLTHKESLAILKRGPPVEITL 133
NG+S+ GL H + + +L + +I+L
Sbjct: 62 NGESVLGLVHMDVVELLLKSGN-KISL 87
Score = 62.4 bits (152), Expect = 2e-12
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 131 ITLIKDGAGLGFSLEGGK----DSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
I + G GFSL + DS V + G A++ G L+AGD I IN
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGE 64
Query: 187 PVTEMSRIEAWSLLKK 202
V + ++ LL K
Sbjct: 65 SVLGLVHMDVVELLLK 80
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 67.6 bits (165), Expect = 5e-14
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 124 KRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
K G V I LIK G GF++ DSP G + VK I L+ GD I I
Sbjct: 9 KAGLLVTIPLIKGPKGFGFAIA---DSPTGQK---VKMILDSQWC---QGLQKGDIIKEI 59
Query: 184 NNVPVTEMSRIEAWSLLKKLNDGT 207
+ V ++ ++ +LK+ G
Sbjct: 60 YHQNVQNLTHLQVVEVLKQFPVGA 83
Score = 57.5 bits (139), Expect = 2e-10
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 39 GCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQ 98
G + L + + L + G +A T KV + LQ
Sbjct: 1 GAMATLYKKAGLLVTIPLIKG--PKGFGFAIADS-------PTGQKVKMILDSQWCQGLQ 51
Query: 99 KGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
KGD I I ++++ LTH + + +LK+ P ++ L+
Sbjct: 52 KGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 67.1 bits (164), Expect = 7e-14
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 38 GGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRL 97
G S + T L + G + G L D + + + G+PA++ G L
Sbjct: 1 GSSGSSGMASTFNPRECKLSKQ-EGQNYGFFLRIEKDTD--GHLIRVIEEGSPAEKAG-L 56
Query: 98 QKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
GDR+L ING + H + + ++++ G V + ++
Sbjct: 57 LDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 94
Score = 60.2 bits (146), Expect = 2e-11
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 119 SLAILKRGPPVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAG 177
S + P E L K +G GF L KD+ ++ I G AEK G L G
Sbjct: 5 SSGMASTFNPRECKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDG 59
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK---------LNDGTIQDIKALGYDLNSLG 222
D +L IN V V + + L++K L+ + + DL L
Sbjct: 60 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELD 113
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 66.6 bits (163), Expect = 8e-14
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + + + G L + V +PA+ G L+ DRI+ +NG M+
Sbjct: 12 LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66
Query: 113 GLTHKESLAILKRGPPVEITLI 134
G H + ++ ++ G E L+
Sbjct: 67 GKQHGDVVSAIRAGGD-ETKLL 87
Score = 59.7 bits (145), Expect = 2e-11
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P T+ K +G GF+L K P ++ + AE +G L+A D I+ +N V
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64
Query: 188 VTEMSRIEAWSLLKK 202
+ + S ++
Sbjct: 65 MEGKQHGDVVSAIRA 79
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 66.2 bits (162), Expect = 9e-14
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+IT+ + G GF++ D P+ V+ + +GG AE+ G L+ D +L +N P
Sbjct: 4 YRQITIPRGKDGFGFTICC-------DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERP 55
Query: 188 VTEMSRIEAWSLLKK 202
V +E ++
Sbjct: 56 VEHWKCVELAHEIRS 70
Score = 65.1 bits (159), Expect = 2e-13
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + R + G T+ + V V SG PA+R G LQ+ D +L +N + ++
Sbjct: 6 QITIPRG--KDGFGFTICCD-----SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVE 57
Query: 113 GLTHKESLAILKRGPPVEITLIKDG 137
E ++ P I L+
Sbjct: 58 HWKCVELAHEIRSCPSEIILLVWRM 82
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 65.8 bits (161), Expect = 1e-13
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ L + N G L + +V G PAD G L+ D I+ +NG ++
Sbjct: 6 LCRLAKG--ENGYGFHLNAIRGLP--GSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVL 60
Query: 113 GLTHKESLAILKR-GPPVEITLI 134
+++ + ++ G V + +
Sbjct: 61 DEPYEKVVDRIQSSGKNVTLLVC 83
Score = 63.1 bits (154), Expect = 1e-12
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P L K G GF L + G +K++ GG A+ G L+ D I+ +N V
Sbjct: 4 PKLCRLAKGENGYGFHLNAIR----GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVN 58
Query: 188 VTEMSRIEAWSLLKK 202
V + + ++
Sbjct: 59 VLDEPYEKVVDRIQS 73
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 65.4 bits (160), Expect = 2e-13
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+ E+ V + + G G T+A V +++ + R L++GD I+ +N
Sbjct: 1 SMELITVHIVKGPMG--FGFTIADSPGGGG--QRVKQIV---DSPRSRGLKEGDLIVEVN 53
Query: 108 GKSMKGLTHKESLAILKRGPP-VEITLI 134
K+++ LTH + + +L P E+TL+
Sbjct: 54 KKNVQALTHNQVVDMLVESPKGSEVTLL 81
Score = 61.1 bits (149), Expect = 4e-12
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
+ + ++K G GF++ G VK+I LK GD I+ +N
Sbjct: 4 LITVHIVKGPMGFGFTIADSP----GGGGQRVKQI--VDSPRS-RGLKEGDLIVEVNKKN 56
Query: 188 VTEMSRIEAWSLLKKLNDG 206
V ++ + +L + G
Sbjct: 57 VQALTHNQVVDMLVESPKG 75
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 64.0 bits (156), Expect = 8e-13
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
L + G + G L D + + + G+PA++ G L GDR+L ING +
Sbjct: 5 SKLSKQ-EGQNYGFFLRIEKDTD--GHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 60
Query: 114 LTHKESLAILKR-GPPVEITLI 134
H + + ++++ G V + ++
Sbjct: 61 EEHAQVVELVRKSGNSVTLLVL 82
Score = 58.2 bits (141), Expect = 7e-11
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNV 186
P E L K +G GF L KD+ ++ I G AEK G L GD +L IN V
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTD----GHLIRVIEEGSPAEKAG-LLDGDRVLRINGV 56
Query: 187 PVTEMSRIEAWSLLKK---------LNDGTIQDIKALGYDLNSLG 222
V + + L++K L+ + + DL L
Sbjct: 57 FVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELD 101
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 62.8 bits (153), Expect = 1e-12
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILS 105
V+ V++ R +G ++ G + ++ G A+R G ++ G RI+
Sbjct: 7 ETMGNVTTVLIRRPDLRYQLGFSVQNG--------IICSLMRGGIAERGG-VRVGHRIIE 57
Query: 106 INGKSMKGLTHKESLAILKRGPPVEITL 133
ING+S+ H++ + IL EI +
Sbjct: 58 INGQSVVATPHEKIVHILSNAVG-EIHM 84
Score = 50.9 bits (122), Expect = 2e-08
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 127 PPVEITLIK---DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTI 183
V LI+ LGFS++ G + + GG AE+ G ++ G I+ I
Sbjct: 10 GNVTTVLIRRPDLRYQLGFSVQNGI----------ICSLMRGGIAERGG-VRVGHRIIEI 58
Query: 184 NNVPVTEMSRIEAWSLLKK 202
N V + +L
Sbjct: 59 NGQSVVATPHEKIVHILSN 77
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 65.6 bits (159), Expect = 2e-12
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + + + G L + V +PA+ G L+ DRI+ +NG M+
Sbjct: 12 LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66
Query: 113 GLTHKESLAILKRGPPVEITLI 134
G H + ++ ++ G E L+
Sbjct: 67 GKQHGDVVSAIRAGGD-ETKLL 87
Score = 57.9 bits (139), Expect = 9e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P T+ K +G GF+L K P ++ + AE +G L+A D I+ +N V
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64
Query: 188 VTEMSRIEAWSLLKK 202
+ + S ++
Sbjct: 65 MEGKQHGDVVSAIRA 79
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 62.2 bits (151), Expect = 3e-12
Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRD 94
+ V+L + G L G E + V G A R
Sbjct: 3 DYIIKEKTVLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 61
Query: 95 GRLQKGDRILSINGKSMKGLTHKESLAILKRGPP-VEITLI 134
G L+ GD ++ +NG+++ + H++ + ++++G + + ++
Sbjct: 62 G-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 101
Score = 57.5 bits (139), Expect = 2e-10
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 128 PVEITLIK-DGAGLGFSLEGGKDSPFGDQ---------PLTVKKIFTGGCAEKNGQLKAG 177
+ L K D G GF L G K ++ ++ + GG A + G L+ G
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMG 66
Query: 178 DEILTINNVPVTEMSRIEAWSLLKK 202
D ++ +N V ++ + +++++
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQ 91
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 62.6 bits (152), Expect = 3e-12
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 53 VVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMK 112
+ + + + G L + V +PA+ G L+ DRI+ +NG M+
Sbjct: 12 LCTMKKG--PSGYGFNLHSDKSKPG--QFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66
Query: 113 GLTHKESLAILKR-GPPVEITLIK 135
G H + ++ ++ G ++ ++
Sbjct: 67 GKQHGDVVSAIRAGGDETKLLVVD 90
Score = 58.0 bits (140), Expect = 1e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 128 PVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
P T+ K +G GF+L K P ++ + AE +G L+A D I+ +N V
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKP----GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVC 64
Query: 188 VTEMSRIEAWSLLKK 202
+ + S ++
Sbjct: 65 MEGKQHGDVVSAIRA 79
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 62.3 bits (151), Expect = 6e-12
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKE-----------ITVHKVISGTPADRDGRLQKGDR 102
V+L + G L G E + V G A R G L+ GD
Sbjct: 31 VLLQKK-DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDF 88
Query: 103 ILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
++ +NG+++ + H++ + ++++ G + + ++
Sbjct: 89 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVV 121
Score = 55.7 bits (134), Expect = 1e-09
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 125 RGPPVEITLIKDGAGLGFSLEGGKDSPFGDQ---------PLTVKKIFTGGCAEKNGQLK 175
+ KD G GF L G K ++ ++ + GG A + G L+
Sbjct: 26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LR 84
Query: 176 AGDEILTINNVPVTEMSRIEAWSLLKK 202
GD ++ +N V ++ + +++++
Sbjct: 85 MGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 60.5 bits (147), Expect = 7e-12
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 51 VSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKS 110
+V + + G +G+T E E+ + +++ G + G L GD I +NG+
Sbjct: 7 GRMVGIRKT-AGEHLGVTFRV----EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQP 61
Query: 111 MKGLTHKESLAILKR 125
+ G + +L+
Sbjct: 62 V-GSDPRALQELLRN 75
Score = 52.4 bits (126), Expect = 6e-09
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 130 EITLIK-DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+ + K G LG + L + +I GG + G L GD I +N PV
Sbjct: 9 MVGIRKTAGEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV 62
Query: 189 TEMSRIEAWSLLKKLND 205
LL+ +
Sbjct: 63 -GSDPRALQELLRNASG 78
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 66.0 bits (160), Expect = 8e-12
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 48 TSEVSVVVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSIN 107
+V R G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N
Sbjct: 6 LRPSMKLVKFRK--GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVN 59
Query: 108 GKSMKGLTHKESLAILKRGPPVE 130
+ +E++ L P E
Sbjct: 60 NVDFTNIIREEAVLFLLDLPKGE 82
Score = 61.8 bits (149), Expect = 2e-10
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINN 185
P +++ + G +G L GG D + V + A K G L+ GD+IL +NN
Sbjct: 7 RPSMKLVKFRKGDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNN 60
Query: 186 VPVTEMSRIEAWSLLKKLNDG 206
V T + R EA L L G
Sbjct: 61 VDFTNIIREEAVLFLLDLPKG 81
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 61.1 bits (148), Expect = 1e-11
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 31/117 (26%)
Query: 46 PGTSEVSVVVLHRDLPGNSVGITLAGGSDY---------------------------ESK 78
+ V L R G TL Y
Sbjct: 4 GSSGGPKTVTLKR--TSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMD 61
Query: 79 EITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKR-GPPVEITLI 134
I V +V G PA G L GDRI+ +NG+S+ G T+ + +A+++ +E++++
Sbjct: 62 TIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
Score = 55.3 bits (133), Expect = 1e-09
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 26/102 (25%)
Query: 126 GPPVEITLIKDGAGLGFSLEGGKDSP-------------------------FGDQPLTVK 160
G P +TL + G GF+L P + VK
Sbjct: 7 GGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVK 66
Query: 161 KIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKK 202
++ GG A + G L GD I+ +N V + + +L++
Sbjct: 67 QVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQN 107
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 59.7 bits (144), Expect = 3e-11
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 131 ITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
I + K GFSL ++ G + L V + G A K G LKAGDEIL INN
Sbjct: 19 IHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 75
Query: 188 VTEMSRIEAWSLLKK 202
++ L +
Sbjct: 76 ADALNSSMLKDFLSQ 90
Score = 57.7 bits (139), Expect = 1e-10
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 50 EVSVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSING 108
+ + + D ++ G +L+ + + + V+ V A + G L+ GD IL IN
Sbjct: 15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINN 73
Query: 109 KSMKGLTHKESLAILKRGPPVEITLI 134
++ L L + P + + +
Sbjct: 74 RAADALNSSMLKDFLSQ-PSLGLLVR 98
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 61.5 bits (148), Expect = 5e-11
Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 58/188 (30%)
Query: 64 SVGITLAGGSDYESKE-------ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH 116
+G +++GG I V +V PA LQ GD+I+ NG S + H
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEH 60
Query: 117 KESLAILKRG-----------------------------------------------PPV 129
+++++LK +
Sbjct: 61 GQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSL 120
Query: 130 EITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDE-ILTINNVPV 188
I+ G+ + G+ P+ + LK G + +T+
Sbjct: 121 LISWDASYYGVSYYRI-TYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSD 179
Query: 189 TEMSRIEA 196
S +
Sbjct: 180 YYGSHHYS 187
Score = 53.4 bits (127), Expect = 2e-08
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 138 AGLGFSLEGGKDSPF-----GDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
LGFS+ GG D + V ++ G A L+ GD+I+ N +
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 59
Query: 193 RIEAWSLLKKLND 205
+A SLLK +
Sbjct: 60 HGQAVSLLKTFQN 72
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 63.8 bits (154), Expect = 5e-11
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 54 VVLHRDLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKG 113
+V R G+SVG+ LAGG+D I V V+ +PA ++G L++GD+IL +N
Sbjct: 4 LVKFRK--GDSVGLRLAGGND---VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57
Query: 114 LTHKESLAILKR 125
+ +E++ L
Sbjct: 58 IIREEAVLFLLD 69
Score = 55.7 bits (133), Expect = 2e-08
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPV 188
+++ + G +G L GG D + V + A K G L+ GD+IL +NNV
Sbjct: 2 MKLVKFRKGDSVGLRLAGGNDVG-----IFVAGVLEDSPAAKEG-LEEGDQILRVNNVDF 55
Query: 189 TEMSRIEAWSLLKKLNDG 206
T + R EA L L G
Sbjct: 56 TNIIREEAVLFLLDLPKG 73
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 56.5 bits (136), Expect = 2e-10
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 131 ITLIKDGA---GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVP 187
I + K GFSL ++ G + L V + G A K G LKAGDEIL INN
Sbjct: 10 IHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 66
Query: 188 VTEMSRIEAWSLLKK 202
++ L +
Sbjct: 67 ADALNSSMLKDFLSQ 81
Score = 55.7 bits (134), Expect = 4e-10
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 46 PGTSEVSVVVLHR-DLPGNSVGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRIL 104
+ + + D ++ G +L+ + + + V+ V A + G L+ GD IL
Sbjct: 2 AMGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 60
Query: 105 SINGKSMKGLTHKESLAILKRGPPVEITL 133
IN ++ L L P + + +
Sbjct: 61 EINNRAADALNSSM-LKDFLSQPSLGLLV 88
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 56.9 bits (138), Expect = 6e-09
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 65 VGITLAGGSDYESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILK 124
VG+ + K++ V G PA++ G + GD I++++G ++KG++ + +L
Sbjct: 87 VGLEI-TYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLL- 143
Query: 125 RGPP---VEITLIKDGAG 139
+G VE+ L GA
Sbjct: 144 QGEADSQVEVVLHAPGAP 161
Score = 36.1 bits (84), Expect = 0.023
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 139 GLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWS 198
G+G LE D G + V GG AEK G +AGD I+T++ V MS +
Sbjct: 86 GVG--LEITYDGGSGKD-VVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSD 141
Query: 199 LLK 201
LL+
Sbjct: 142 LLQ 144
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 54.6 bits (132), Expect = 5e-08
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
V +V+ + A + G ++ GD I S+NGK S L + + + G + + L++DG
Sbjct: 290 VSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQ--VGTMPVGSKLTLGLLRDGK 346
Query: 138 ------------------AGLGFSLEGGKDSPFG-DQPLTVKKIFTGGCAEKNGQLKAGD 178
+ + +EG + S G DQ + V + TG A + G LK GD
Sbjct: 347 QVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGD 405
Query: 179 EILTINNVPVTEMSRIEA 196
I+ N V ++ +
Sbjct: 406 VIIGANQQAVKNIAELRK 423
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 52.3 bits (126), Expect = 2e-07
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
V +V+ G+ + + G ++ GD I S+NGK S L + +A + G V++ L+++G
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSR--IATTEPGTKVKLGLLRNGK 323
Query: 138 ------------------AGLGFSLEGGKDSPFGDQPLT----VKKIFTGGCAEKNGQLK 175
+ +LEG S + + ++ G A + G L+
Sbjct: 324 PLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQ 382
Query: 176 AGDEILTINNVPVTEMSRIEA 196
D I+ +N V ++ +
Sbjct: 383 KDDVIIGVNRDRVNSIAEMRK 403
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 47.3 bits (113), Expect = 6e-07
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
V +V +P+ R G +Q GD I+ +NG+ + E + P+ + + +
Sbjct: 39 VQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVLTESPLLLEVRRGN 91
Score = 32.3 bits (74), Expect = 0.094
Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
V+++ +++ G ++ GD I+ +N P+ + S
Sbjct: 39 VQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVDSS 71
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 50.4 bits (121), Expect = 9e-07
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 34/145 (23%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG- 137
V +V +PA+ G L+ GD I IN + +++L+ G V+I + +D
Sbjct: 286 VSQVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTT--ISLLRVGSTVKIIVERDNK 342
Query: 138 ------------------AGLGFSLEGGKDSPFGDQP--------LTVKKIFTGGCAEKN 171
L G F + + V +
Sbjct: 343 PLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRA 402
Query: 172 GQLKAGDEILTINNVPVTEMSRIEA 196
G ++ GD I++ N PVT++ ++
Sbjct: 403 G-IRPGDIIISANKKPVTDVKSLQT 426
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 46.8 bits (111), Expect = 1e-06
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 75 YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITL 133
++ + + V+ G+PA L G I SING LT +L + G + IT
Sbjct: 22 HQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITT 79
Query: 134 IKDG 137
+
Sbjct: 80 DQGT 83
Score = 29.8 bits (67), Expect = 0.82
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ + G A K L G I +IN +P + ++
Sbjct: 29 IDSVVPGSPASK--VLTPGLVIESINGMPTSNLT 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 72/490 (14%), Positives = 134/490 (27%), Gaps = 140/490 (28%)
Query: 21 QQELQQLIDESNQSLD-EGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESKE 79
+Q L +L N +D G G + V++ V V + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGS------GKTWVALDVC-LS---YKVQCKMDFKIFW---- 186
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK-----ESLAILKRGPPVEITLI 134
+ + + +L + ++ L ++ S + + I I
Sbjct: 187 LNL------------KNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 135 KDGAGLGFSLEGGKDSPFGDQPLTV------KKI---FTGGCAEKNGQLKAGDEIL-TIN 184
+ + ++ L V K F C +IL T
Sbjct: 231 QAELRRLLKSKPYENC------LLVLLNVQNAKAWNAFNLSC-----------KILLTTR 273
Query: 185 NVPVTE--MSRIEAWSLLKKLNDGTIQD------IKALGYDLNSL------GYPRTQDLN 230
VT+ + L + D +K L L PR L+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LS 331
Query: 231 ALGYPKTRDLNALEYIKTRDLNALEYIKTRDLNALRYPKTQDLNALEYPKTQDLNALGHP 290
+ L + K + + L I LN L + + + + L+ P
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----F---DRLSVF--P 382
Query: 291 K-----TQDLNAL-GHPKTQDLNALIQDLNALG-------------YDLNALGHPKTQDL 331
T L+ + D+ ++ L+ + K ++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 332 NALGYKILNALEYPKSQDLNALGYPKTQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKT 391
AL I++ PK+ D + L P D + + + H K
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSH--------IGH----------HLKN 483
Query: 392 QDLNDTRFEYPKI-QDLNAL-------GYDLNALGHPKTQDLNDTRFEYPK-IQDLNALG 442
+ + + + D L NA G L +F Y I D N
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKF-YKPYICD-NDPK 540
Query: 443 YD--LNALGH 450
Y+ +NA+
Sbjct: 541 YERLVNAILD 550
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 45.4 bits (108), Expect = 2e-06
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+HKVI G+PA R G L+ GD IL+I + ++ ++ ++ + + + +
Sbjct: 39 IHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRRGR 91
Score = 31.5 bits (72), Expect = 0.20
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ K+ G A + G L+ GD IL I V
Sbjct: 39 IHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE 71
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 44.0 bits (104), Expect = 5e-06
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 81 TVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGL 140
+ V + A G LQ GDRI+ ++G+ + L G + + + + G+ L
Sbjct: 7 VLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 141 GFSL 144
+L
Sbjct: 66 SLTL 69
Score = 29.8 bits (67), Expect = 0.63
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 156 PLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAW 197
++ + A G L+AGD I+ ++ P+T+
Sbjct: 5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQWVTFVML 45
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 47.1 bits (112), Expect = 9e-06
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 61 PGNSVGITLAGGSD-YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE- 118
P TL D + + V+ G+PA+ G LQ+G I+ +NG + E
Sbjct: 72 PSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESEL 130
Query: 119 ----------SLAILKRGPPVEITLIKDGAG 139
+ G E+T G
Sbjct: 131 LQGSTRQLQIGVYKEVVGEDGEVTGGVVPIG 161
Score = 39.4 bits (92), Expect = 0.003
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 136 DGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIE 195
G ++L D+ + + G AE+ G L+ G I+ +N +T+ E
Sbjct: 72 PSYGFDYTLYKVLDND-TAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESE 129
Query: 196 AWS 198
Sbjct: 130 LLQ 132
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 43.5 bits (103), Expect = 1e-05
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 75 YESKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITL 133
+ V V PA L GD I I+G + K + + K G V+I
Sbjct: 4 VTYDGVYVMSVKDDVPAA--DVLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINY 61
Query: 134 IKDG 137
Sbjct: 62 KHGD 65
Score = 27.7 bits (62), Expect = 3.1
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLND 205
V + A L AGD I I+ + KK+ D
Sbjct: 11 VMSVKDDVPAAD--VLHAGDLITEIDGNAFKSSQEFIDYIHSKKVGD 55
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+ +VI TPA+ G L++ D I+SING+S+ + + ++KR + + + +
Sbjct: 258 IIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKRESTLNMVVRRGN 310
Score = 32.6 bits (75), Expect = 0.31
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ ++ AE G LK D I++IN V +
Sbjct: 258 IIEVIPDTPAEAGG-LKENDVIISINGQSVVSAN 290
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+HKVI G+PA R G L+ GD IL+I + ++ ++ ++ + + + +
Sbjct: 260 IHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRTQSQLAVQIRRGR 312
Score = 31.4 bits (72), Expect = 0.60
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ K+ G A + G L+ GD IL I V
Sbjct: 260 IHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAE 292
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 42.3 bits (100), Expect = 3e-05
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 76 ESKEITVHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEIT 132
E+K + V V+ PA GRL+ GDRI +I+G+ + + + + + G V +T
Sbjct: 3 EAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSEQIVSY--VREKQAGDRVRVT 58
Query: 133 LIKDG 137
I+D
Sbjct: 59 FIRDR 63
Score = 26.9 bits (60), Expect = 6.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
V + A G+L+AGD I I+ P+
Sbjct: 9 VMSVLPNMPAA--GRLEAGDRIAAIDGQPINTSE 40
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 41.9 bits (99), Expect = 3e-05
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKD 136
I V+ PA G+++ GD+I+S +GK S + L ++ K G V + + ++
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQSAEKLIDY--ISSKKAGDKVTLKIERE 58
Query: 137 G 137
Sbjct: 59 E 59
Score = 27.2 bits (61), Expect = 3.9
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ A+ G+++ GD+I++ +
Sbjct: 5 ASSVVENMPAK--GKIEVGDKIISADGKNYQSAE 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 5e-05
Identities = 44/253 (17%), Positives = 74/253 (29%), Gaps = 101/253 (39%)
Query: 19 ISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYESK 78
++Q+++Q ++++N L P +V I+L G+
Sbjct: 344 LTQEQVQDYVNKTNSHL----------PAGKQVE--------------ISLVNGAK---- 375
Query: 79 EITVHKVISGTPADRDG---RLQKG--------------DRILSINGKSMKGLT-----H 116
+ V+SG P G L+K +R L S + L H
Sbjct: 376 ----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF---SNRFLPVASPFH 428
Query: 117 KESLAILKRGPPVEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKA 176
L P + KD S D + V F G + ++ +
Sbjct: 429 SHLLV------PASDLINKDLVKNNVSFNA------KDIQIPVYDTFDG----SDLRVLS 472
Query: 177 G-------DEILT-------INNVPVT--------EMSRIEAWSLLKKLNDGT-IQDIKA 213
G D I+ T S + L + DGT ++ I A
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG--VLTHRNKDGTGVRVIVA 530
Query: 214 LGYDLNS---LGY 223
D+N G+
Sbjct: 531 GTLDINPDDDYGF 543
Score = 38.1 bits (88), Expect = 0.008
Identities = 53/294 (18%), Positives = 77/294 (26%), Gaps = 110/294 (37%)
Query: 91 ADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAG--------LGF 142
AD + G IL I PV +T+ G
Sbjct: 1649 ADNHFKDTYGFSILDI-----------------VINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 143 SLEGGKDSPFGDQPL-------TVKKIFTGGCAEKNGQLKAGDEILTINNVP---VTEMS 192
E D + + + F + G L T P + E +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLLS-----ATQFTQPALTLMEKA 1742
Query: 193 RIEAWSLLKKLNDGTIQDIKAL-GYDLNSLG-YPRTQDLNAL----GYPKTRDLNALEYI 246
A+ LK G I G+ SLG Y AL +E +
Sbjct: 1743 ---AFEDLKS--KGLIPADATFAGH---SLGEY------AALASLADVMSIES--LVEVV 1786
Query: 247 KTRDLNALEYIKTRD-----------LNALRYPKTQDLNALEY------PKTQDL----N 285
R + ++ RD +N R + AL+Y +T L N
Sbjct: 1787 FYRGM-TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 286 ALGHPKTQDLNALGHPKTQ-----DLNALIQDLNALGYDLNALGHPKTQDLNAL 334
N Q DL A L+ + LN + K D+ L
Sbjct: 1846 ---------YNV---ENQQYVAAGDLRA----LDTVTNVLNFIKLQKI-DIIEL 1882
Score = 33.9 bits (77), Expect = 0.19
Identities = 44/268 (16%), Positives = 87/268 (32%), Gaps = 108/268 (40%)
Query: 3 REQFGSITSIASSTSLISQQELQQLIDESNQSL----DEGGC-------PSLLIPGTSEV 51
RE + ++ + +++ + I+E + S ++G P+L + +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL-----M 1739
Query: 52 SVVVLHRDL------PGNSVGITLAGGSDYESKEITVHKVIS-G------TPADRDGRLQ 98
DL P ++ AG H S G + AD
Sbjct: 1740 EKAAF-EDLKSKGLIPADAT---FAG-----------H---SLGEYAALASLAD------ 1775
Query: 99 KGDRILSINGKSMKGLTHKESLAIL--KRGPPVEITLIKDGAGLG----FSLEGGKDSPF 152
++SI ESL + RG +++ + +D G ++ G+ +
Sbjct: 1776 ----VMSI-----------ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 153 GDQ---PLTVKKIFTGGCAEKNGQLKAGDEILTIN-NVP----VTEMSRIEAWSLLKKLN 204
Q V+++ ++ G L EI +N NV V A
Sbjct: 1821 FSQEALQYVVERV-----GKRTGWLV---EI--VNYNVENQQYVA------A-------- 1856
Query: 205 DGTIQDIKALGYDLNSLGYPRTQDLNAL 232
G ++ + + LN + + D+ L
Sbjct: 1857 -GDLRALDTVTNVLNFIKLQKI-DIIEL 1882
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.3 bits (96), Expect = 9e-05
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 129 VEITLIKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKN-GQLKAGDEILTINNVP 187
+ + + GFS+ S + VK++ + N + GD IL IN P
Sbjct: 19 ISMPATTECR-RGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP 77
Query: 188 VTEMSRIEAWSLLKKLNDGTIQ 209
V + E +K+ T+Q
Sbjct: 78 VRTLRVEEVEDAIKQ-TSQTLQ 98
Score = 41.0 bits (95), Expect = 1e-04
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 66 GITLAGGSDYESKEITV---HKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKE-SLA 121
G ++ S + TV + + GDRIL ING ++ L +E A
Sbjct: 30 GFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDA 89
Query: 122 ILKRGPPVEITLIKD 136
I + +++ + D
Sbjct: 90 IKQTSQTLQLLIEHD 104
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 42.8 bits (100), Expect = 1e-04
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHK-ESLAILKRGPPVEITLIKDGAG- 139
V +V +P R G D I+SING + + L PV++ +
Sbjct: 20 VLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLE 79
Query: 140 -----------------LGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILT 182
LG S+ + V ++ + A G D I+
Sbjct: 80 LRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIG 139
Query: 183 INNVPVTE 190
+ V
Sbjct: 140 ADTVMNES 147
Score = 31.2 bits (70), Expect = 0.68
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTE 190
G G S+E G V ++ + G D I++IN + +
Sbjct: 1 GMGSSQSVEIPGGGTEG---YHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNK 51
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 43.5 bits (101), Expect = 1e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 80 ITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDG 137
+ V V A G L GD+I++I+ + K L G V I +
Sbjct: 498 LDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRD 554
Score = 30.0 bits (66), Expect = 2.7
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 157 LTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLK 201
L V ++ A G L AGD+I+ I+++ TE S
Sbjct: 498 LDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYI 541
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 42.9 bits (100), Expect = 3e-04
Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 3/121 (2%)
Query: 17 SLISQQELQQLIDESNQSLDEGGCPSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDYE 76
++ +L +I E E G + + +
Sbjct: 698 LCKTRYDLSNVIVEM---QGEYRTSHSYEMGGTFTDKDPFRSGRIACDFKLDGDHYVVAK 754
Query: 77 SKEITVHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKD 136
+ +P G G I I+G+++ ++ + K G I L
Sbjct: 755 AYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSARIRLSGK 814
Query: 137 G 137
G
Sbjct: 815 G 815
Score = 29.8 bits (66), Expect = 2.9
Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 2/65 (3%)
Query: 137 GAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEA 196
F L+G + G G I I+ V S
Sbjct: 738 RIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NI 795
Query: 197 WSLLK 201
+ +L
Sbjct: 796 YRVLS 800
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 38.0 bits (88), Expect = 7e-04
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRG-PPVEITLIKDGAG 139
V ++ + + A + G + +++G + K G IT+ G+
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSD 63
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLNDGTIQ 209
V +I A + + G E+ ++ + + + L+ K+ D +
Sbjct: 6 VGEIAANSIAAEAQ-IAPGTELKAVDGIETPDWDAVR-LQLVDKIGDESTT 54
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 41.0 bits (97), Expect = 7e-04
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
V++V PA G +Q D I+S++ K + +A ++ G + + +++D
Sbjct: 248 VNEVSPDGPAANAG-IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD 303
Score = 31.8 bits (73), Expect = 0.47
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
V ++ G A G ++ D I++++N P
Sbjct: 248 VNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL 280
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG 137
V +V+ G+ + + G ++ GD I S+NGK S L + +A + G V++ L+++G
Sbjct: 267 VSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSR--IATTEPGTKVKLGLLRNG 322
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 37.2 bits (86), Expect = 0.002
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
V + G LQ GD +++NG + + + +T+ +DG
Sbjct: 41 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG 96
Score = 28.4 bits (63), Expect = 2.1
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
+D LG+ + GKD E G L+ GD + +N + +T+ +
Sbjct: 31 KRDDKVLGYRVSPGKD---------------PVLFESIG-LQDGDMAVALNGLDLTDPN- 73
Query: 194 IEAWSLLKKLNDGT 207
+L + +N+ T
Sbjct: 74 -VMNTLFQSMNEMT 86
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLIKDG 137
V V S PA+ G L+K D I ++ K S L L G ++IT ++G
Sbjct: 61 VRSVQSNMPAN--GHLEKYDVITKVDDKEIASSTDLQSA--LYNHSIGDTIKITYYRNG 115
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 34.8 bits (80), Expect = 0.008
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGKSMKGLTH-KESLAILKRGPPVEITLIKDG 137
V + G LQ GD +++NG + + + +T+ +DG
Sbjct: 23 VSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG 78
Score = 29.4 bits (66), Expect = 0.66
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 134 IKDGAGLGFSLEGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSR 193
+D LG+ + GKD E G L+ GD + +N + +T+ +
Sbjct: 13 KRDDKVLGYRVSPGKD---------------PVLFESIG-LQDGDMAVALNGLDLTDPN- 55
Query: 194 IEAWSLLKKLNDGT 207
+L + +N+ T
Sbjct: 56 -VMNTLFQSMNEMT 68
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 37.3 bits (87), Expect = 0.011
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 82 VHKVISGTPADRDGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPPVEITLI-KDG 137
+ +V++G A G + KG + ++ + S L + G V +T G
Sbjct: 246 IVEVVAGGAAANAG-VPKGVVVTKVDDRPINSADALVAA--VRSKAPGATVALTFQDPSG 302
Score = 30.0 bits (68), Expect = 2.2
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 159 VKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMS 192
+ ++ GG A G + G + +++ P+
Sbjct: 246 IVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD 278
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 34.9 bits (81), Expect = 0.057
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 15/69 (21%)
Query: 82 VHKVISGTPADR----------DGRLQKGDRILSINGK---SMKGLTHKESLAILKRGPP 128
V PA + GRL GD I S+NG + L L K G
Sbjct: 255 VLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRI--LDQCKVGDE 312
Query: 129 VEITLIKDG 137
V + +++
Sbjct: 313 VTVEVLRGD 321
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.11
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 21 QQELQQLIDESNQSL---DEGGCPSLLIPGTSE 50
+Q L++L +++ L D P+L I T E
Sbjct: 19 KQALKKL--QASLKLYADDSA--PALAIKATME 47
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase;
2.40A {Sesbania mosaic virus}
Length = 191
Score = 32.8 bits (74), Expect = 0.16
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 38 GGCPSLLIPGTSEVSVVVLHRDLPGNSVG---ITLAGGSDYESKEITVHKVISGTPADRD 94
G S + G S+V + ++G T G D +T H V +
Sbjct: 3 GSFYSPVKAGDEPASLVAIKSG--PTTIGFGCRTKIDGEDC---LLTAHHVWCNSMR-PT 56
Query: 95 GRLQKGDRILSINGKSMKGLTHKES-LAILKRGPPVEITL 133
G + G ++ + + + K AI++ V L
Sbjct: 57 GLAKAGKQVSVEDWEISMSSSDKMLDFAIVRVPTHVWSKL 96
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 30.8 bits (70), Expect = 1.1
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 14/47 (29%)
Query: 298 LGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEY 344
+ + + IQ+ + GYD++ +LNA +Y
Sbjct: 115 MAQRHNKAVQEFIQEFDNAGYDVH--------------IILLNANDY 147
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A
{Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Length = 583
Score = 31.0 bits (69), Expect = 1.2
Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 22/135 (16%)
Query: 85 VISGTPADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEITLIKDGAGLGFSL 144
+ ++ +I+ + + + L I + G L
Sbjct: 305 DMEDFDPSGPPPWEEFAKIIQVFSSNTEALI---------------IDQTNNPGGSVLYL 349
Query: 145 EGGKDSPFGDQPLTVKKIFTGGCAEKNGQLKAGDEILTINNVPVTEMSRIEAWSLLKKLN 204
S D+PL + K Q + D + + + + + +L +
Sbjct: 350 Y-ALLSMLTDRPLELPKH-----RMILTQDEVVDALDWLTLLENVDTNVESRLALGDNME 403
Query: 205 DGTIQDIKALGYDLN 219
G D++ Y +
Sbjct: 404 -GYTVDLQVAEYLKS 417
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 17/49 (34%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG------------GCAEKNG 172
AG +D+ GD V+ T GC+ G
Sbjct: 334 AGH---PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYG 379
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 30.9 bits (68), Expect = 1.4
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 41 PSLLIPGTSEVSVVVLHRDLPGNSVGITLAGGSDY------ESKEITVHKVISGT----- 89
P++L + E V+ H V +T+ E+ ++ + T
Sbjct: 31 PNILRLESEETVVLEAHGGQGTIQVSVTVHDFPAKKQVLSNENTQLNSNNGYLSTVTIKI 90
Query: 90 PADRDGRLQKGDRILSINGKSMKGLTHKESLAILKRGPPVEI 131
PA ++ + KG + +++ + ++ + I + + I
Sbjct: 91 PASKELKSDKGHKFVTVVATF-GNVQVEKVVLISLQSGYLFI 131
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 29.9 bits (68), Expect = 1.5
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 17/49 (34%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG------------GCAEKNG 172
AG +D+ GD V+ T GC+ G
Sbjct: 177 AGH---PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYG 222
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 20/63 (31%)
Query: 127 PPVEITLIKDG---AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG------------GCAE 169
+ + AG +D+ GD V+ T GC+
Sbjct: 252 GKNRMDVFSQNMFCAGH---PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR 308
Query: 170 KNG 172
G
Sbjct: 309 GYG 311
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 30.5 bits (68), Expect = 1.6
Identities = 25/217 (11%), Positives = 52/217 (23%), Gaps = 11/217 (5%)
Query: 302 KTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKIL----NALEYPKSQDLNALGYPK 357
K Q + L++ L + ++ ++ L + E+ +
Sbjct: 216 KVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAHPPYTQSALISEWLGPVQERFFAHQC 275
Query: 358 TQDLNVLEYPKTRDLNALRYPKTQDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNAL 417
+V P D + + ++ G D
Sbjct: 276 QTYNDVPLPAPDTYYQQRILPVLLDSFDRNSAAMTTHSGL---FNQVILHCMTGVDCTDG 332
Query: 418 GHPKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGY--- 474
K L + +P + G N G P F QD +
Sbjct: 333 TRQKAAALYEQYLAHPAVSPHIHNGLFGNYDGSPDWTTRAADNFLLLSSQDSDTAMMLST 392
Query: 475 -DLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNAL 510
L + +P D + ++++ L
Sbjct: 393 DTLLTMLNPTPDTAWDNFYLLRAGENVSTAQISPVEL 429
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 29.8 bits (68), Expect = 2.0
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG------GCAEKN 171
AG LEGGKDS GD P+ G GCAE
Sbjct: 162 AGY---LEGGKDSCQGDSGGPVVCNGELQGVVSWGYGCAEPG 200
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Length = 327
Score = 29.3 bits (66), Expect = 3.2
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 296 NALGHPKTQDLNALIQDLNALGYDLNALGHPKTQDLNALGYKILNALEY 344
N H L + +N L Y + K+LNAL+Y
Sbjct: 123 NFASHDNGNTLEVVKNTMNELDYSFH--------------AKVLNALDY 157
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 28.6 bits (65), Expect = 4.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG------GCAEKN 171
G LEGGKDS GD P+ G GCA+KN
Sbjct: 167 VGF---LEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKN 205
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 28.3 bits (64), Expect = 5.2
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG-------GCAEKN 171
AG ++GG + D PL I G C E
Sbjct: 178 AG---EMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPT 217
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 28.8 bits (64), Expect = 5.3
Identities = 36/275 (13%), Positives = 85/275 (30%), Gaps = 35/275 (12%)
Query: 271 QDLNALEYPKTQDLNALGHPKTQDLNALGHPKTQDLNALIQDLNALGYDLNALGHPKTQD 330
+ + + L + Q L + GHP+ + + L ++ L + + +
Sbjct: 51 RAVEDYG-RNIKQLASRA----QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRK 105
Query: 331 LNALGYKILNALEYPK-SQDLNALGYPKTQDLNVLEYPKTRD-LNALRYPKTQDLNALGH 388
L + + + + + DL K + E + D + LR
Sbjct: 106 LEN----MYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLR----DKFRDF-- 155
Query: 389 PKTQDLNDTRFEYPKIQDLNALGYDLNALGHPKTQDLNDTRFEYPKIQDLNALGYDLNAL 448
++ E ++ ++NA L GH + + + LN + DL L
Sbjct: 156 --ARETGAIGQE--RVDNVNAFIERLIDAGHSEAATIAE------WKDGLNEMWADLLEL 205
Query: 449 GHPKTQDLNDTRFEYPKIQDLNALGYDLN----ALGHPKTQDLNDTRFEYPKIQDLNALG 504
+ Q L + + + ++ L D + + A
Sbjct: 206 IDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAES---FHRVHTAFE 262
Query: 505 YDLNALGHPKTQDLNAIGYKILNALGHPESPKTRD 539
D++ L + Q + ++ A ++ ++
Sbjct: 263 RDVHLL-GVQVQQFQDVATRLQTAYAGEKAEAIQN 296
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 28.4 bits (64), Expect = 6.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 91 ADRDGRLQKGDRIL 104
GRL+KGDRI
Sbjct: 315 LKELGRLKKGDRIA 328
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 27.9 bits (63), Expect = 6.7
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 138 AGLGFSLEGGKDSPFGDQ--PLTVKKIFTG-------GCAEKN 171
AG + GKDS GD PL G C K
Sbjct: 162 AG---DEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIPCGSKE 201
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 28.3 bits (63), Expect = 6.9
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 4 EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGGC 40
++FG++ + S + + + + + L + L+ GG
Sbjct: 149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK 185
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 27.9 bits (62), Expect = 7.3
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 4 EQFGSITSIASSTSLISQQELQQLIDESNQSLDEGG 39
+F ++T S+ +++L++L + ++L GG
Sbjct: 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 27.9 bits (63), Expect = 8.7
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 91 ADRDGRLQKGDRIL 104
+G L +G R++
Sbjct: 335 MRANGTLARGMRLM 348
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 27.9 bits (63), Expect = 9.5
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 91 ADRDGRLQKGDRIL 104
R G L+ G ++
Sbjct: 293 GLRQGILRDGGNMV 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.135 0.390
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,087,772
Number of extensions: 495893
Number of successful extensions: 1527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1221
Number of HSP's successfully gapped: 403
Length of query: 548
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 450
Effective length of database: 3,965,535
Effective search space: 1784490750
Effective search space used: 1784490750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)