BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6409
(1832 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 290 bits (743), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 170/435 (39%), Positives = 238/435 (54%), Gaps = 36/435 (8%)
Query: 1395 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKT 1454
G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TGSGKT
Sbjct: 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 1455 LAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505
AFLLP+L I S + + R Q P ++++APTRELA QI EE KF
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 126
Query: 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565
+R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLDEADR
Sbjct: 127 RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186
Query: 1566 MIDMGFEPDVQKILE--YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 1623
M+DMGFEP +++I+E MP K R T+MF+AT P
Sbjct: 187 MLDMGFEPQIRRIVEQDTMP-----------------------PKGVRHTMMFSATFPKE 223
Query: 1624 VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFV 1682
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++FV
Sbjct: 224 IQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFV 283
Query: 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742
KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI
Sbjct: 284 ETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDIS 343
Query: 1743 DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTC 1802
+V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 344 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-QEV 402
Query: 1803 PPELLNHPDAQHKPG 1817
P L N H G
Sbjct: 403 PSWLENMAYEHHYKG 417
Score = 290 bits (742), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 165/415 (39%), Positives = 233/415 (56%), Gaps = 35/415 (8%)
Query: 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKT 779
G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TGSGKT
Sbjct: 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 780 LAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830
AFLLP+L I S + + R Q P ++++APTRELA QI EE KF
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 126
Query: 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890
+R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLDEADR
Sbjct: 127 RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR 186
Query: 891 MIDMGFEPDVQKILE--YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 948
M+DMGFEP +++I+E MP K R T+MF+AT P
Sbjct: 187 MLDMGFEPQIRRIVEQDTMP-----------------------PKGVRHTMMFSATFPKE 223
Query: 949 VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFV 1007
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++FV
Sbjct: 224 IQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFV 283
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI
Sbjct: 284 ETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDIS 343
Query: 1068 DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
+V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 344 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 180/373 (48%), Gaps = 82/373 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 30 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE--YMPVTN 170
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E MP
Sbjct: 150 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP--- 206
Query: 171 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENK 230
K R T+MF+AT P
Sbjct: 207 --------------------PKGVRHTMMFSATFP------------------------- 221
Query: 231 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 290
++ LAR +L + +G VG +E I Q V + E
Sbjct: 222 ----------------------KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 259
Query: 291 QDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 349
DKR L+++LN G ++FV KKGAD L L GY ++HG + Q RE AL
Sbjct: 260 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319
Query: 350 NSLKGGSKDILMA 362
+ + G IL+A
Sbjct: 320 HQFRSGKSPILVA 332
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 227/389 (58%), Gaps = 30/389 (7%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G VP P++++ A L I++ + K GY PTPIQ+ +IP+ RD++ A+TG
Sbjct: 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTG 103
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L + P + + G P +I++PTRELA QI E KF +
Sbjct: 104 SGKTAAFLLPILSKLLEDP-----HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
+ +V GG S Q + GC +VIATPGRL+D ++ ++ ++VLDEADRM+DM
Sbjct: 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM 218
Query: 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
GF D+++I+ ++ ++P+ QT+MF+AT P ++R+A
Sbjct: 219 GFSEDMRRIMTHV---TMRPE--------------------HQTLMFSATFPEEIQRMAG 255
Query: 955 SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGAD 1014
+L+ V IG VG ++Q +Y +++ KR KL+E+L+ I+FV K+GAD
Sbjct: 256 EFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGAD 314
Query: 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1074
LA L + + ++HG + Q QRE AL K GS +L+AT VA RG+DIK++ VIN
Sbjct: 315 FLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN 374
Query: 1075 YDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103
YDM I+DY HRIGRTGR G G A SF
Sbjct: 375 YDMPSKIDDYVHRIGRTGRVGNNGRATSF 403
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 227/389 (58%), Gaps = 30/389 (7%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G VP P++++ A L I++ + K GY PTPIQ+ +IP+ RD++ A+TG
Sbjct: 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTG 103
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L + P + + G P +I++PTRELA QI E KF +
Sbjct: 104 SGKTAAFLLPILSKLLEDP-----HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYL 158
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
+ +V GG S Q + GC +VIATPGRL+D ++ ++ ++VLDEADRM+DM
Sbjct: 159 KIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM 218
Query: 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
GF D+++I+ ++ ++P+ QT+MF+AT P ++R+A
Sbjct: 219 GFSEDMRRIMTHV---TMRPE--------------------HQTLMFSATFPEEIQRMAG 255
Query: 1630 SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGAD 1689
+L+ V IG VG ++Q +Y +++ KR KL+E+L+ I+FV K+GAD
Sbjct: 256 EFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGAD 314
Query: 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1749
LA L + + ++HG + Q QRE AL K GS +L+AT VA RG+DIK++ VIN
Sbjct: 315 FLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN 374
Query: 1750 YDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778
YDM I+DY HRIGRTGR G G A SF
Sbjct: 375 YDMPSKIDDYVHRIGRTGRVGNNGRATSF 403
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 178/362 (49%), Gaps = 77/362 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ K GY PTPIQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P +
Sbjct: 71 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP-----HEL 125
Query: 62 DQG-PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G P +I++PTRELA QI E KF ++ +V GG S Q + GC +VIA
Sbjct: 126 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIA 185
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D ++ ++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 186 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------ 236
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
QT+MF+AT P
Sbjct: 237 --------------HQTLMFSATFP----------------------------------- 247
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
++R+A +L+ V IG VG ++Q +Y +++ KR KL+E+
Sbjct: 248 ------------EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEI 295
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
L+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +L
Sbjct: 296 LSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVL 354
Query: 361 MA 362
+A
Sbjct: 355 IA 356
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 35/388 (9%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 23 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 82
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
++ PK+ +++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 83 VK--PKLNKIQ-------ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 133
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 134 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969
T+ Q+++F+AT P V+ +L +P + +
Sbjct: 194 TH-------------------------QSLLFSATFPLTVKEFMVKHLHKPYEINLME-E 227
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+
Sbjct: 228 LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYY 287
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
H Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIG
Sbjct: 288 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIG 347
Query: 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
R+GR G GLA++ +D Y ++Q
Sbjct: 348 RSGRFGHLGLAINLINWNDRFNLYKIEQ 375
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 35/388 (9%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 23 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 82
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
++ PK+ +++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 83 VK--PKLNKIQ-------ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 133
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 134 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644
T+ Q+++F+AT P V+ +L +P + +
Sbjct: 194 TH-------------------------QSLLFSATFPLTVKEFMVKHLHKPYEINLME-E 227
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+
Sbjct: 228 LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYY 287
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
H Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIG
Sbjct: 288 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIG 347
Query: 1765 RTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
R+GR G GLA++ +D Y ++Q
Sbjct: 348 RSGRFGHLGLAINLINWNDRFNLYKIEQ 375
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 158/362 (43%), Gaps = 82/362 (22%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L ++ PK+ +++
Sbjct: 36 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVK--PKLNKIQ-- 91
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+IM PTRELA Q + G GI ++ GG + + RL I++ T
Sbjct: 92 -----ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 146
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P T+
Sbjct: 147 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH----------- 195
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q+++F+AT P + E+M V +L K Y
Sbjct: 196 --------------QSLLFSATF-PLTVKEFM-VKHL-------------------HKPY 220
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+M T+ + I Q + E+ K L +
Sbjct: 221 EINLMEELTL---------------------------KGITQYYAFVEERQKLHCLNTLF 253
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
++ IIF N ++LAK + LGY+ H Q++R + + G L+
Sbjct: 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313
Query: 362 AG 363
Sbjct: 314 CS 315
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 154/269 (57%), Gaps = 29/269 (10%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 14 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 73
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 74 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 129
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 130 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 189
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 938
+ TY+VLDEADRM+DMGFEP ++KI V ++PD RQT
Sbjct: 190 RTTYLVLDEADRMLDMGFEPQIRKI-----VDQIRPD--------------------RQT 224
Query: 939 VMFTATMPPAVERLARSYLRRPATVYIGS 967
+M++AT P V +LA +L+ + IG+
Sbjct: 225 LMWSATWPKEVRQLAEDFLKDYIHINIGA 253
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/269 (38%), Positives = 154/269 (57%), Gaps = 29/269 (10%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 14 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 73
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 74 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 129
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 130 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 189
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 1613
+ TY+VLDEADRM+DMGFEP ++KI V ++PD RQT
Sbjct: 190 RTTYLVLDEADRMLDMGFEPQIRKI-----VDQIRPD--------------------RQT 224
Query: 1614 VMFTATMPPAVERLARSYLRRPATVYIGS 1642
+M++AT P V +LA +L+ + IG+
Sbjct: 225 LMWSATWPKEVRQLAEDFLKDYIHINIGA 253
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 120/205 (58%), Gaps = 29/205 (14%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 57 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 115
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 116 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 172
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI V ++PD
Sbjct: 173 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI-----VDQIRPD------ 221
Query: 181 ENKLLANYNSKKKYRQTVMFTATMP 205
RQT+M++AT P
Sbjct: 222 --------------RQTLMWSATWP 232
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 190/379 (50%), Gaps = 42/379 (11%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 787
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
+ + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 67 ELV----------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 116
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
Q L+ IV+ TPGR++D + L L Y +LDEAD ++ GF DV+KIL
Sbjct: 117 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKIL--- 172
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
N+ K ++ ++F+AT P + LA+ Y + +
Sbjct: 173 ----------------------NACNKDKRILLFSATXPREILNLAKKYXGDYSFIK--- 207
Query: 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027
K IEQ ++E ++ + L +L + + ++F K+ LA L +G+ A
Sbjct: 208 -AKINANIEQSYVEVNENERFEALCRLL-KNKEFYGLVFCKTKRDTKELASXLRDIGFKA 265
Query: 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1087
+HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HR
Sbjct: 266 GAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHR 325
Query: 1088 IGRTGRAGKEGLAVSFCTK 1106
IGRTGRAGK+G A+S +
Sbjct: 326 IGRTGRAGKKGKAISIINR 344
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 190/379 (50%), Gaps = 42/379 (11%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 1462
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
+ + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 67 ELV----------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 116
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
Q L+ IV+ TPGR++D + L L Y +LDEAD ++ GF DV+KIL
Sbjct: 117 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKIL--- 172
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
N+ K ++ ++F+AT P + LA+ Y + +
Sbjct: 173 ----------------------NACNKDKRILLFSATXPREILNLAKKYXGDYSFIK--- 207
Query: 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702
K IEQ ++E ++ + L +L + + ++F K+ LA L +G+ A
Sbjct: 208 -AKINANIEQSYVEVNENERFEALCRLL-KNKEFYGLVFCKTKRDTKELASXLRDIGFKA 265
Query: 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1762
+HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HR
Sbjct: 266 GAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHR 325
Query: 1763 IGRTGRAGKEGLAVSFCTK 1781
IGRTGRAGK+G A+S +
Sbjct: 326 IGRTGRAGKKGKAISIINR 344
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 146/358 (40%), Gaps = 89/358 (24%)
Query: 6 GYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 64
G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ + + + G
Sbjct: 25 GFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV----------NENNG 74
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
AII+ PTRELA Q+ +E ++ + GG + Q L+ IV+ TPGR
Sbjct: 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGR 133
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
++D + L L Y +LDEAD ++ GF DV+KIL
Sbjct: 134 ILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKIL--------------------- 172
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
N+ K ++ ++F+AT P +IL N KKY
Sbjct: 173 ----NACNKDKRILLFSATX-PREIL-------------------------NLAKKYXGD 202
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
F A + +SY+ ER E + +L K K+
Sbjct: 203 YSFIKAKINA--NIEQSYVEV----------NENERFEALCRLL----KNKEFYG----- 241
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
++F K+ LA L +G+ A +HG Q QRE + K IL+A
Sbjct: 242 -----LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIA 294
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 154/266 (57%), Gaps = 29/266 (10%)
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 4 TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVA 63
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 119
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
+ ++ +++ + GG + Q L G EI IATPGRLID LE L + TY
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 942
+VLDEADRM+DMGFEP ++KI V ++PD RQT+M++
Sbjct: 180 LVLDEADRMLDMGFEPQIRKI-----VDQIRPD--------------------RQTLMWS 214
Query: 943 ATMPPAVERLARSYLRRPATVYIGSV 968
AT P V +LA +L+ + IG++
Sbjct: 215 ATWPKEVRQLAEDFLKDYIHINIGAL 240
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 154/266 (57%), Gaps = 29/266 (10%)
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 4 TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVA 63
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 119
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
+ ++ +++ + GG + Q L G EI IATPGRLID LE L + TY
Sbjct: 120 QVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 1617
+VLDEADRM+DMGFEP ++KI V ++PD RQT+M++
Sbjct: 180 LVLDEADRMLDMGFEPQIRKI-----VDQIRPD--------------------RQTLMWS 214
Query: 1618 ATMPPAVERLARSYLRRPATVYIGSV 1643
AT P V +LA +L+ + IG++
Sbjct: 215 ATWPKEVRQLAEDFLKDYIHINIGAL 240
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 120/205 (58%), Gaps = 29/205 (14%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 43 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 101
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 102 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI V ++PD
Sbjct: 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI-----VDQIRPD------ 207
Query: 181 ENKLLANYNSKKKYRQTVMFTATMP 205
RQT+M++AT P
Sbjct: 208 --------------RQTLMWSATWP 218
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A
Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2 A
Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2 A
Resolution
Length = 410
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 93
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 94 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 144
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 145 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 205 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 239
Query: 965 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 240 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 299
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 359
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 360 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 93
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 94 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 144
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 145 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 205 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 239
Query: 1640 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 240 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 299
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 359
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 360 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 82/358 (22%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R
Sbjct: 56 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---QCLDIQVR------ET 106
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELA QI++ G + ++ +GG + E +L G +V TPGR+
Sbjct: 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 166
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 167 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT---------- 211
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q V+ +AT+P E + +TN
Sbjct: 212 ----------QVVLISATLPH----EILEMTN---------------------------- 229
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 304
++ P + + E I+Q V + E+ K L ++ +
Sbjct: 230 ---------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 274
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF N K+ D L + + + + ++HG Q++RE + + G+ +L++
Sbjct: 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 95 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 145
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 146 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 205
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 206 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 240
Query: 965 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 241 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 300
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 301 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 360
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 361 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 95 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 145
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 146 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 205
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 206 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 240
Query: 1640 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 241 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 300
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 301 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 360
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 361 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 82/358 (22%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R
Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---QCLDIQVR------ET 107
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELA QI++ G + ++ +GG + E +L G +V TPGR+
Sbjct: 108 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 167
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT---------- 212
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q V+ +AT+P E + +TN
Sbjct: 213 ----------QVVLISATLPH----EILEMTN---------------------------- 230
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 304
++ P + + E I+Q V + E+ K L ++ +
Sbjct: 231 ---------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF N K+ D L + + + + ++HG Q++RE + + G+ +L++
Sbjct: 276 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped
Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A Trapped
Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 95 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 145
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 146 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 205
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 206 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 240
Query: 965 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 241 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 300
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 301 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 360
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 361 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 95 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 145
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 146 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 205
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 206 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 240
Query: 1640 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 241 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 300
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 301 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 360
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 361 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 82/358 (22%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R
Sbjct: 57 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---QCLDIQVR------ET 107
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELA QI++ G + ++ +GG + E +L G +V TPGR+
Sbjct: 108 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 167
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 168 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT---------- 212
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q V+ +AT+P E + +TN
Sbjct: 213 ----------QVVLISATLPH----EILEMTN---------------------------- 230
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 304
++ P + + E I+Q V + E+ K L ++ +
Sbjct: 231 ---------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF N K+ D L + + + + ++HG Q++RE + + G+ +L++
Sbjct: 276 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 333
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A
Resolution
Length = 374
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L
Sbjct: 8 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLD 64
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
R A +I+APTRELA Q+++ G + +++ +GG + E +L
Sbjct: 65 IQVRETQA------LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY 118
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G +V TPGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----P 173
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
T Q V+ +AT+P V + ++ P + + E
Sbjct: 174 AT--------------------QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEG 213
Query: 975 IEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I+Q V + E+ K L ++ + +IF N K+ D L + + + + ++HG
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+GR
Sbjct: 274 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 333
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
G++G+AV+F DD + D++Q
Sbjct: 334 YGRKGVAVNFVKNDDIRVLRDIEQ 357
Score = 187 bits (474), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 198/384 (51%), Gaps = 35/384 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L
Sbjct: 8 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLD 64
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
R A +I+APTRELA Q+++ G + +++ +GG + E +L
Sbjct: 65 IQVRETQA------LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY 118
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
G +V TPGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----P 173
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649
T Q V+ +AT+P V + ++ P + + E
Sbjct: 174 AT--------------------QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEG 213
Query: 1650 IEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I+Q V + E+ K L ++ + +IF N K+ D L + + + + ++HG
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+GR
Sbjct: 274 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 333
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
G++G+AV+F DD + D++Q
Sbjct: 334 YGRKGVAVNFVKNDDIRVLRDIEQ 357
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 82/362 (22%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R A
Sbjct: 16 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLDIQVRETQA 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+APTRELA Q+++ G + +++ +GG + E +L G +V T
Sbjct: 73 ------LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 127 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT------ 175
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+ +AT+P E + +TN
Sbjct: 176 --------------QVVLISATLPH----EVLEMTN------------------------ 193
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEV 300
++ P + + E I+Q V + E+ K L ++
Sbjct: 194 -------------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 234
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ +IF N K+ D L + + + + ++HG Q++RE + + G+ +L
Sbjct: 235 YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 294
Query: 361 MA 362
++
Sbjct: 295 IS 296
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 13 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 72
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 73 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 123
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 124 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 183
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 184 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 218
Query: 965 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 219 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 278
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 279 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 338
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 339 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 372
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 199/394 (50%), Gaps = 35/394 (8%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F +
Sbjct: 13 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 72
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L Q L R A+I+APTRELA QI++ G + ++ +GG +
Sbjct: 73 SVL---QCLDIQVR------ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN 123
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 124 VGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 183
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y+P P T Q V+ +AT+P + + ++ P +
Sbjct: 184 RYLP-----PAT--------------------QVVLISATLPHEILEMTNKFMTDPIRIL 218
Query: 1640 IGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
+ E I+Q V + E+ K L ++ + +IF N K+ D L + + +
Sbjct: 219 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA 278
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E
Sbjct: 279 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL 338
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 339 YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 372
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 151/358 (42%), Gaps = 82/358 (22%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R
Sbjct: 35 GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---QCLDIQVR------ET 85
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELA QI++ G + ++ +GG + E +L G +V TPGR+
Sbjct: 86 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRV 145
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 146 FDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT---------- 190
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q V+ +AT+P E + +TN
Sbjct: 191 ----------QVVLISATLPH----EILEMTN---------------------------- 208
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 304
++ P + + E I+Q V + E+ K L ++ +
Sbjct: 209 ---------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 253
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF N K+ D L + + + + ++HG Q++RE + + G+ +L++
Sbjct: 254 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 311
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A
Resolution
Length = 374
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 35/384 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L
Sbjct: 8 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLD 64
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
R A +I+APTRELA Q+++ G + ++ +GG + E +L
Sbjct: 65 IQVRETQA------LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G +V TPGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----P 173
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
T Q V+ +AT+P + + ++ P + + E
Sbjct: 174 AT--------------------QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEG 213
Query: 975 IEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I+Q V + E+ K L ++ + +IF N K+ D L + + + + ++HG
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+GR
Sbjct: 274 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 333
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
G++G+AV+F DD + D++Q
Sbjct: 334 YGRKGVAVNFVKNDDIRVLRDIEQ 357
Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 35/384 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L
Sbjct: 8 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLD 64
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
R A +I+APTRELA Q+++ G + ++ +GG + E +L
Sbjct: 65 IQVRETQA------LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY 118
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
G +V TPGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P
Sbjct: 119 GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----P 173
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649
T Q V+ +AT+P + + ++ P + + E
Sbjct: 174 AT--------------------QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEG 213
Query: 1650 IEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I+Q V + E+ K L ++ + +IF N K+ D L + + + + ++HG
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+GR
Sbjct: 274 MPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 333
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
G++G+AV+F DD + D++Q
Sbjct: 334 YGRKGVAVNFVKNDDIRVLRDIEQ 357
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 152/362 (41%), Gaps = 82/362 (22%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L Q L R A
Sbjct: 16 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVL---QCLDIQVRETQA 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+APTRELA Q+++ G + ++ +GG + E +L G +V T
Sbjct: 73 ------LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P P T
Sbjct: 127 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-----PAT------ 175
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+ +AT+P E + +TN
Sbjct: 176 --------------QVVLISATLPH----EILEMTN------------------------ 193
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEV 300
++ P + + E I+Q V + E+ K L ++
Sbjct: 194 -------------------KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 234
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ +IF N K+ D L + + + + ++HG Q++RE + + G+ +L
Sbjct: 235 YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 294
Query: 361 MA 362
++
Sbjct: 295 IS 296
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 200/398 (50%), Gaps = 39/398 (9%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
P + +++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGG 842
L L ++E ++M TRELA QI +E +F + ++ + GG
Sbjct: 63 LATL---------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 113
Query: 843 LSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDV 900
LS ++ L+ C IV+ TPGR++ + N+ L L + +LDEAD+M++ + DV
Sbjct: 114 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDV 173
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
Q+I P +Q +MF+AT+ + + R +++ P
Sbjct: 174 QEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDP 208
Query: 961 ATVYIGSVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKG 1019
+++ K T Q Y+ L + +K +KL ++L+ V+IFV + LA+
Sbjct: 209 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 268
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
L + + A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM +
Sbjct: 269 LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE 328
Query: 1080 SIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1116
+ Y HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 329 DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 366
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 200/398 (50%), Gaps = 39/398 (9%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
P + +++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGG 1517
L L ++E ++M TRELA QI +E +F + ++ + GG
Sbjct: 63 LATL---------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 113
Query: 1518 LSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDV 1575
LS ++ L+ C IV+ TPGR++ + N+ L L + +LDEAD+M++ + DV
Sbjct: 114 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDV 173
Query: 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
Q+I P +Q +MF+AT+ + + R +++ P
Sbjct: 174 QEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDP 208
Query: 1636 ATVYIGSVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKG 1694
+++ K T Q Y+ L + +K +KL ++L+ V+IFV + LA+
Sbjct: 209 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 268
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
L + + A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM +
Sbjct: 269 LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE 328
Query: 1755 SIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1791
+ Y HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 329 DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 366
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 149/365 (40%), Gaps = 85/365 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 22 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGC-EIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 73 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 132
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDEAD+M++ + DVQ+I P
Sbjct: 133 GTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTP----------- 181
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
+Q +MF+AT+ E PV
Sbjct: 182 --------------HEKQVMMFSATLSK----EIRPV----------------------- 200
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI-LSEQDKRKKL 297
R +++ P +++ K T Q Y+ L + +K +KL
Sbjct: 201 --------------------CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 240
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L+ V+IFV + LA+ L + + A +H G QE+R K +
Sbjct: 241 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 300
Query: 358 DILMA 362
IL+A
Sbjct: 301 RILVA 305
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 147/265 (55%), Gaps = 28/265 (10%)
Query: 713 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 772
DYS T + + N+ E L I I Y PTPIQ+ AIP L++RDI+ A
Sbjct: 15 DYSAT-------NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACA 67
Query: 773 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832
+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 68 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 127
Query: 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEADRM+
Sbjct: 128 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187
Query: 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952
DMGFEP ++KI+E E+ + + N RQT+MF+AT P +++L
Sbjct: 188 DMGFEPQIRKIIE----------------ESNMPSGIN-----RQTLMFSATFPKEIQKL 226
Query: 953 ARSYLRRPATVYIGSVGKPTERIEQ 977
A +L + +G VG ++ I+Q
Sbjct: 227 AADFLYNYIFMTVGRVGSTSDSIKQ 251
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 147/265 (55%), Gaps = 28/265 (10%)
Query: 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 1447
DYS T + + N+ E L I I Y PTPIQ+ AIP L++RDI+ A
Sbjct: 15 DYSAT-------NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACA 67
Query: 1448 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 1507
+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 68 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 127
Query: 1508 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEADRM+
Sbjct: 128 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 187
Query: 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627
DMGFEP ++KI+E E+ + + N RQT+MF+AT P +++L
Sbjct: 188 DMGFEPQIRKIIE----------------ESNMPSGIN-----RQTLMFSATFPKEIQKL 226
Query: 1628 ARSYLRRPATVYIGSVGKPTERIEQ 1652
A +L + +G VG ++ I+Q
Sbjct: 227 AADFLYNYIFMTVGRVGSTSDSIKQ 251
Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 21/200 (10%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
Y PTPIQ+ AIP L++RDI+ A+TGSGKT AFL+P++ + + P
Sbjct: 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+I+APTRELA QI E+ KF +R+ +V GG Q +++GC +++ATPGRL
Sbjct: 102 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRL 161
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
+D +E + L C YIVLDEADRM+DMGFEP ++KI+E E+ +
Sbjct: 162 VDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIE----------------ESNMP 205
Query: 186 ANYNSKKKYRQTVMFTATMP 205
+ N RQT+MF+AT P
Sbjct: 206 SGIN-----RQTLMFSATFP 220
Score = 37.7 bits (86), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ 283
RQT+MF+AT P +++LA +L + +G VG ++ I+Q
Sbjct: 210 RQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 197/392 (50%), Gaps = 39/392 (9%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 848
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 -------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 120
Query: 849 GFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 906
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 121 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 181 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD 215
Query: 967 SVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
K T Q Y+ L + +K +KL ++L+ V+IFV + LA+ L + +
Sbjct: 216 DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085
A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335
Query: 1086 HRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1116
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 197/392 (50%), Gaps = 39/392 (9%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 1523
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 -------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 120
Query: 1524 GFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 1581
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 121 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 181 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD 215
Query: 1642 SVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
K T Q Y+ L + +K +KL ++L+ V+IFV + LA+ L + +
Sbjct: 216 DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760
A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335
Query: 1761 HRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1791
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 148/365 (40%), Gaps = 85/365 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 23 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGC-EIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 133
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 134 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 182
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
+Q +MF+AT+ E PV
Sbjct: 183 --------------HEKQVMMFSATLSK----EIRPV----------------------- 201
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI-LSEQDKRKKL 297
R +++ P +++ K T Q Y+ L + +K +KL
Sbjct: 202 --------------------CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L+ V+IFV + LA+ L + + A +H G QE+R K +
Sbjct: 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 358 DILMA 362
IL+A
Sbjct: 302 RILVA 306
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 197/392 (50%), Gaps = 39/392 (9%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 848
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 -------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 120
Query: 849 GFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 906
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 121 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 181 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD 215
Query: 967 SVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
K T Q Y+ L + +K +KL ++L+ V+IFV + LA+ L + +
Sbjct: 216 DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085
A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335
Query: 1086 HRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1116
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 197/392 (50%), Gaps = 39/392 (9%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 1523
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 -------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 120
Query: 1524 GFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 1581
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 121 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 180
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 181 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD 215
Query: 1642 SVGKPTERIEQIVYI-LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
K T Q Y+ L + +K +KL ++L+ V+IFV + LA+ L + +
Sbjct: 216 DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 275
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760
A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 276 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 335
Query: 1761 HRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLK 1791
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 336 HRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 148/365 (40%), Gaps = 85/365 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 23 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGC-EIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 133
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 134 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 182
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
+Q +MF+AT+ E PV
Sbjct: 183 --------------HEKQVMMFSATLSK----EIRPV----------------------- 201
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI-LSEQDKRKKL 297
R +++ P +++ K T Q Y+ L + +K +KL
Sbjct: 202 --------------------CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L+ V+IFV + LA+ L + + A +H G QE+R K +
Sbjct: 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 358 DILMA 362
IL+A
Sbjct: 302 RILVA 306
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 171 bits (433), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 197/393 (50%), Gaps = 50/393 (12%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 785
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 61
Query: 786 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 844
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 62 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 903
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 116 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 964 YIGSVGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
+ + + I+Q+ +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK 1079
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD +A
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1080 SIED---YTHRIGRTGRAGKEGLAVSFCTKDDS 1109
D Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Score = 171 bits (433), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 197/393 (50%), Gaps = 50/393 (12%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 1460
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 61
Query: 1461 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 1519
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 62 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 1578
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 116 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 1639 YIGSVGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
+ + + I+Q+ +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK 1754
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD +A
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1755 SIED---YTHRIGRTGRAGKEGLAVSFCTKDDS 1784
D Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF SL + R+
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---------SLTMLTRVN 70
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIV 118
D P AI +AP+RELA+Q E + G I + L+V + +Q + +++
Sbjct: 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ-----INAQVI 125
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMP 167
+ TPG ++D++ + + L + VLDEAD M+D G ++ ++P
Sbjct: 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 175
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-ILSEQDKRKKLM 298
K Q V+F+AT AV + A+ + T+ + + + I+Q+ +E DK L
Sbjct: 176 KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLT 235
Query: 299 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
E+ IIFV KK A+VL L+ G+ LHG ++R+ ++ + G
Sbjct: 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK 295
Query: 359 ILM 361
+L+
Sbjct: 296 VLI 298
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 197/393 (50%), Gaps = 50/393 (12%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 785
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 61
Query: 786 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 844
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 62 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 903
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 116 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 964 YIGSVGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
+ + + I+Q+ +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK 1079
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD +A
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1080 SIED---YTHRIGRTGRAGKEGLAVSFCTKDDS 1109
D Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Score = 171 bits (432), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 197/393 (50%), Gaps = 50/393 (12%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 1460
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 61
Query: 1461 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 1519
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 62 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 1578
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 116 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 1639 YIGSVGKPTERIEQIVY-ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
+ + + I+Q+ +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK 1754
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD +A
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1755 SIED---YTHRIGRTGRAGKEGLAVSFCTKDDS 1784
D Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF SL + R+
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---------SLTMLTRVN 70
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIV 118
D P AI +AP+RELA+Q E + G I + L+V + +Q + +++
Sbjct: 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ-----INAQVI 125
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMP 167
+ TPG ++D++ + + L + VLDEAD M+D G ++ ++P
Sbjct: 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP 175
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-ILSEQDKRKKLM 298
K Q V+F+AT AV + A+ + T+ + + + I+Q+ +E DK L
Sbjct: 176 KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLT 235
Query: 299 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
E+ IIFV KK A+VL L+ G+ LHG ++R+ ++ + G
Sbjct: 236 ELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK 295
Query: 359 ILM 361
+L+
Sbjct: 296 VLI 298
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 205/399 (51%), Gaps = 38/399 (9%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L I+ K + A+++APTRELAQQI++ G +G +GG +
Sbjct: 99 LQQIELDLKATQ---------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR 149
Query: 847 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I +
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209
Query: 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+ N N+ Q V+ +ATMP V + + ++R P + +
Sbjct: 210 KL--------------------NSNT-----QVVLLSATMPSDVLEVTKKFMRDPIRILV 244
Query: 966 GSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
E I Q YI E+++ K L ++ +IF+N ++ D L + +
Sbjct: 245 KKEELTLEGIRQF-YINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 303
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+ + E+
Sbjct: 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 363
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
Y HRIGR GR G++G+A++ T++D D++ +S
Sbjct: 364 YIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 205/399 (51%), Gaps = 38/399 (9%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L I+ K + A+++APTRELAQQI++ G +G +GG +
Sbjct: 99 LQQIELDLKATQ---------ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR 149
Query: 1522 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I +
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209
Query: 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+ N N+ Q V+ +ATMP V + + ++R P + +
Sbjct: 210 KL--------------------NSNT-----QVVLLSATMPSDVLEVTKKFMRDPIRILV 244
Query: 1641 GSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
E I Q YI E+++ K L ++ +IF+N ++ D L + +
Sbjct: 245 KKEELTLEGIRQF-YINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 303
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+ + E+
Sbjct: 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 363
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1797
Y HRIGR GR G++G+A++ T++D D++ +S
Sbjct: 364 YIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 153/360 (42%), Gaps = 85/360 (23%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L I+ K +
Sbjct: 59 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQ-------- 110
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGR 124
A+++APTRELAQQI++ G +G +GG + + +L++ I++ TPGR
Sbjct: 111 -ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 169
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 170 VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------------------ 211
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
N N+ Q V+ +ATM P+ +LE
Sbjct: 212 --NSNT-----QVVLLSATM-PSDVLE--------------------------------- 230
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK--KLMEVLN 302
+ + ++R P + + E I Q YI E+++ K L ++
Sbjct: 231 -------------VTKKFMRDPIRILVKKEELTLEGIRQF-YINVEREEWKLDTLCDLYE 276
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF+N ++ D L + + + +HG Q++R++ + + GS +L+
Sbjct: 277 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 336
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 202/398 (50%), Gaps = 45/398 (11%)
Query: 729 NWKE-------ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 781
NW E +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT
Sbjct: 8 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 67
Query: 782 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841
F + +L ++E + A+++APTRELAQQI++ G +G +G
Sbjct: 68 FAISIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 118
Query: 842 GLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 900
G + + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 119 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 178
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
I + + N N+ Q V+ +ATMP V + + ++R P
Sbjct: 179 YDIFQKL--------------------NSNT-----QVVLLSATMPSDVLEVTKKFMRDP 213
Query: 961 ATVYIGSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
+ + E I Q YI E+++ K L ++ +IF+N ++ D L +
Sbjct: 214 IRILVKKEELTLEGIRQF-YINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE 272
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 273 KMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 332
Query: 1079 KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 333 TNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 370
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 202/398 (50%), Gaps = 45/398 (11%)
Query: 1404 NWKE-------ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 1456
NW E +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT
Sbjct: 8 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 67
Query: 1457 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 1516
F + +L ++E + A+++APTRELAQQI++ G +G +G
Sbjct: 68 FAISIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 118
Query: 1517 GLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575
G + + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 119 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 178
Query: 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
I + + N N+ Q V+ +ATMP V + + ++R P
Sbjct: 179 YDIFQKL--------------------NSNT-----QVVLLSATMPSDVLEVTKKFMRDP 213
Query: 1636 ATVYIGSVGKPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
+ + E I Q YI E+++ K L ++ +IF+N ++ D L +
Sbjct: 214 IRILVKKEELTLEGIRQF-YINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE 272
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 273 KMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 332
Query: 1754 KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 333 TNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 370
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 85/360 (23%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E +
Sbjct: 33 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL---------QQIELDLKAT 83
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGR 124
A+++APTRELAQQI++ G +G +GG + + +L++ I++ TPGR
Sbjct: 84 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 143
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 144 VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL------------------ 185
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
N N+ Q V+ +ATM P+ +LE
Sbjct: 186 --NSNT-----QVVLLSATM-PSDVLE--------------------------------- 204
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK--KLMEVLN 302
+ + ++R P + + E I Q YI E+++ K L ++
Sbjct: 205 -------------VTKKFMRDPIRILVKKEELTLEGIRQF-YINVEREEWKLDTLCDLYE 250
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF+N ++ D L + + + +HG Q++R++ + + GS +L+
Sbjct: 251 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 310
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/406 (28%), Positives = 204/406 (50%), Gaps = 37/406 (9%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 21 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 76
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 77 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 131
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 132 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 191 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILVK 225
Query: 1642 SVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
E I+Q V + E+ K + L ++ + +IF N ++ + L L +
Sbjct: 226 KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 285
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760
++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y
Sbjct: 286 TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 345
Query: 1761 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
HRIGR GR G++G+A++F T +D +L++ S+ + P ++
Sbjct: 346 HRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY-STQIEELPSDI 390
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 194/383 (50%), Gaps = 36/383 (9%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 21 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 76
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 77 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 131
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 132 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 191 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILVK 225
Query: 967 SVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
E I+Q V + E+ K + L ++ + +IF N ++ + L L +
Sbjct: 226 KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 285
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085
++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y
Sbjct: 286 TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 345
Query: 1086 HRIGRTGRAGKEGLAVSFCTKDD 1108
HRIGR GR G++G+A++F T +D
Sbjct: 346 HRIGRGGRFGRKGVAINFVTNED 368
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 83/358 (23%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ EP+ IQ++AI ++ D++ A++G+GKT F S+ + R++ + + P
Sbjct: 41 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---------SIAALQRIDTSVKAP 91
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+++APTRELA QI++ + I+ +GG S E LR +IV+ TPGR+
Sbjct: 92 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRV 150
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
D ++ R ++ +LDEAD M+ GF+ + +I +P T
Sbjct: 151 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--------------- 195
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
Q V+ +ATMP N +L
Sbjct: 196 ----------QVVLLSATMP-----------------------NDVL------------- 209
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+ ++R P + + E I+Q V + E+ K + L ++ +
Sbjct: 210 -----------EVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 258
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF N ++ + L L + ++ Q++R+ + + GS IL++
Sbjct: 259 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 787
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 23 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 843
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 83 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 844 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 899
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 195
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 958
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 196 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
Query: 959 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1007
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 237 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 295
Query: 1008 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 296 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355
Query: 1065 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 356 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 1462
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 23 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 1518
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 83 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 1519 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 1574
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 195
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 1633
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 196 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
Query: 1634 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1682
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 237 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 295
Query: 1683 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 296 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355
Query: 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 356 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 17/171 (9%)
Query: 2 IEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+ + I
Sbjct: 36 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL-----INTKF 90
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGLS-REEQGFRLRLG 114
D+ A+I+APTR+LA QIE E K G++ V +VGG R +L
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 115 CEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
IVIATPGRLIDVLE N++ Y VLDEADR++++GF D++ I
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDDLETI 199
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 787
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 74 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 133
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 843
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 134 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Query: 844 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 899
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 189 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 246
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 958
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 247 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 287
Query: 959 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1007
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 288 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 346
Query: 1008 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 347 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 406
Query: 1065 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 407 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 450
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 1462
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 74 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 133
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 1518
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 134 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Query: 1519 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 1574
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 189 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 246
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 1633
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 247 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 287
Query: 1634 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1682
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 288 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 346
Query: 1683 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 347 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 406
Query: 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 407 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 450
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 17/171 (9%)
Query: 2 IEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+ + I
Sbjct: 87 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL-----INTKF 141
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGLS-REEQGFRLRLG 114
D+ A+I+APTR+LA QIE E K G++ V +VGG R +L
Sbjct: 142 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201
Query: 115 CEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
IVIATPGRLIDVLE N++ Y VLDEADR++++GF D++ I
Sbjct: 202 PNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDDLETI 250
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase
From Sulfolobus Tokodaii
Length = 337
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 190/371 (51%), Gaps = 58/371 (15%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
+I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------- 53
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 857
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R +
Sbjct: 54 -----ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NAD 107
Query: 858 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIIL------------- 154
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR----PATVYIGSVGKPTE 973
A+ N+ + T +F+AT+P + ++ + ++ A + + +V
Sbjct: 155 -AQTSNR-----------KITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHK-- 200
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
++ + D R K+ + L K VI+FV + + +AK L +L NA L G
Sbjct: 201 ------FVHVKDDWRSKV-QALRENKDKGVIVFVRTR---NRVAK-LVRLFDNAIELRGD 249
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309
Query: 1094 AGKEGLAVSFC 1104
G++G A++F
Sbjct: 310 MGRKGEAITFI 320
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 190/371 (51%), Gaps = 58/371 (15%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
+I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---------- 53
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 1532
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R +
Sbjct: 54 -----ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NAD 107
Query: 1533 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIIL------------- 154
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR----PATVYIGSVGKPTE 1648
A+ N+ + T +F+AT+P + ++ + ++ A + + +V
Sbjct: 155 -AQTSNR-----------KITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHK-- 200
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
++ + D R K+ + L K VI+FV + + +AK L +L NA L G
Sbjct: 201 ------FVHVKDDWRSKV-QALRENKDKGVIVFVRTR---NRVAK-LVRLFDNAIELRGD 249
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 250 LPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGR 309
Query: 1769 AGKEGLAVSFC 1779
G++G A++F
Sbjct: 310 MGRKGEAITFI 320
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 9 IREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL--------------- 53
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R +IV+AT
Sbjct: 54 ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVAT 112
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIIL 154
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound
To Ssrna And Amp-Pnp
Length = 512
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 787
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 23 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 843
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 83 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 844 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 899
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 195
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 958
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 196 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
Query: 959 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1007
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 237 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 295
Query: 1008 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 296 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355
Query: 1065 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 356 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 133/404 (32%), Positives = 202/404 (50%), Gaps = 52/404 (12%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLL 1462
+E L EI + I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+
Sbjct: 23 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGL 1518
+ I D+ A+I+APTR+LA QIE E K G++ V +VGG
Sbjct: 83 QHL-----INTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Query: 1519 S-REEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPD 1574
R +L IVIATPGRLIDVLE N++ Y VLDEADR++++GF D
Sbjct: 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDD 195
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR-QTVMFTATMPPAVERLARSYLR 1633
++ I + +L NSK +T++F+AT+ V++LA + +
Sbjct: 196 LETI-------------------SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 236
Query: 1634 RPATVYIGSVGK----PTERIEQIVYILSEQDKRKKL--MEVLNRGVKK-----PVIIFV 1682
+ +++ +V K ERI+Q V ++SE+ +E + + +K+ IIF
Sbjct: 237 KKECLFLDTVDKNEPEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFA 295
Query: 1683 NQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739
K L L+ K HG Q +R + K ILV TDV RG+
Sbjct: 296 PTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355
Query: 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
D +V V+ + + +Y HRIGRT R+GKEG +V F KD+
Sbjct: 356 DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 17/171 (9%)
Query: 2 IEKIGYAEPTPIQRQAI-PI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I PI ++ D+I A+TG+GKT AFL+P+ + I
Sbjct: 36 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL-----INTKF 90
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIR---TVLVVGGLS-REEQGFRLRLG 114
D+ A+I+APTR+LA QIE E K G++ V +VGG R +L
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 115 CEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
IVIATPGRLIDVLE N++ Y VLDEADR++++GF D++ I
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFRDDLETI 199
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 32/245 (13%)
Query: 723 VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL 780
+P P +K+A P ++L+ I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL
Sbjct: 14 IPKPTCRFKDAFQQYP-DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72
Query: 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV 840
++L+P + + S P I+R + GP +++ PTRELA +E E +K+ G++++ +
Sbjct: 73 SYLMPGFIHLDSQP-ISR--EQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIY 128
Query: 841 GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 900
GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M+DM FEP +
Sbjct: 129 GGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQI 188
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
+KIL +++PD RQTVM +AT P V +LA SYL+ P
Sbjct: 189 RKIL-----LDVRPD--------------------RQTVMTSATWPDTVRQLALSYLKDP 223
Query: 961 ATVYI 965
VY+
Sbjct: 224 MIVYV 228
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 32/245 (13%)
Query: 1398 VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL 1455
+P P +K+A P ++L+ I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL
Sbjct: 14 IPKPTCRFKDAFQQYP-DLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72
Query: 1456 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV 1515
++L+P + + S P I+R + GP +++ PTRELA +E E +K+ G++++ +
Sbjct: 73 SYLMPGFIHLDSQP-ISR--EQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIY 128
Query: 1516 GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575
GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M+DM FEP +
Sbjct: 129 GGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQI 188
Query: 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
+KIL +++PD RQTVM +AT P V +LA SYL+ P
Sbjct: 189 RKIL-----LDVRPD--------------------RQTVMTSATWPDTVRQLALSYLKDP 223
Query: 1636 ATVYI 1640
VY+
Sbjct: 224 MIVYV 228
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 29/204 (14%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P I+R +
Sbjct: 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP-ISR--EQ 91
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IAT
Sbjct: 92 RNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D+ N + L TY+V+DEAD+M+DM FEP ++KIL +++PD
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL-----LDVRPD------- 198
Query: 182 NKLLANYNSKKKYRQTVMFTATMP 205
RQTVM +AT P
Sbjct: 199 -------------RQTVMTSATWP 209
Score = 37.4 bits (85), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
RQTVM +AT P V +LA SYL+ P VY+
Sbjct: 199 RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 35/241 (14%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+ +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF LP+L
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
+ P Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 103 NALLETP---------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS 153
Query: 848 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V KIL+
Sbjct: 154 QSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
+P + R+T +F+ATM V++L R+ L+ P +
Sbjct: 214 IP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248
Query: 967 S 967
S
Sbjct: 249 S 249
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 35/241 (14%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+ +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF LP+L
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
+ P Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 103 NALLETP---------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMS 153
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V KIL+
Sbjct: 154 QSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
+P + R+T +F+ATM V++L R+ L+ P +
Sbjct: 214 IP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248
Query: 1642 S 1642
S
Sbjct: 249 S 249
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 109/166 (65%), Gaps = 10/166 (6%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF LP+L + P
Sbjct: 59 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--------- 109
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+ Q L I+IATP
Sbjct: 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATP 169
Query: 123 GRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GRLID LEN + L Y+V+DEADR+++M FE +V KIL+ +P
Sbjct: 170 GRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 198/406 (48%), Gaps = 37/406 (9%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTF---- 75
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
S+ + R++ + + P A+ +APTRELA QI++ I+ +GG S
Sbjct: 76 -----SIAALQRIDTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFV 130
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
E LR +IV+ TPGR+ D ++ R ++ +LDEAD + GF+ + +I
Sbjct: 131 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTL 189
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
+P T Q V+ +AT P V + + R P + +
Sbjct: 190 LPPTT-------------------------QVVLLSATXPNDVLEVTTKFXRNPVRILVK 224
Query: 1642 SVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
E I+Q V + E+ K + L ++ + +IF N ++ + L L +
Sbjct: 225 KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 284
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760
++ Q++R+ + GS IL++TD+ RGID++ VS+VINYD+ + E+Y
Sbjct: 285 TVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344
Query: 1761 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
HRIGR GR G++G+A++F T +D +L++ S+ + P ++
Sbjct: 345 HRIGRGGRFGRKGVAINFVTNEDVGAXRELEKFY-STQIEELPSDI 389
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 188/383 (49%), Gaps = 36/383 (9%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTF---- 75
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
S+ + R++ + + P A+ +APTRELA QI++ I+ +GG S
Sbjct: 76 -----SIAALQRIDTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFV 130
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
E LR +IV+ TPGR+ D ++ R ++ +LDEAD + GF+ + +I
Sbjct: 131 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTL 189
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
+P T Q V+ +AT P V + + R P + +
Sbjct: 190 LPPTT-------------------------QVVLLSATXPNDVLEVTTKFXRNPVRILVK 224
Query: 967 SVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
E I+Q V + E+ K + L ++ + +IF N ++ + L L +
Sbjct: 225 KDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 284
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085
++ Q++R+ + GS IL++TD+ RGID++ VS+VINYD+ + E+Y
Sbjct: 285 TVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 344
Query: 1086 HRIGRTGRAGKEGLAVSFCTKDD 1108
HRIGR GR G++G+A++F T +D
Sbjct: 345 HRIGRGGRFGRKGVAINFVTNED 367
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ EP+ IQ++AI ++ D++ A++G+GKT F S+ + R++ + + P
Sbjct: 40 GFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTF---------SIAALQRIDTSVKAP 90
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+ +APTRELA QI++ I+ +GG S E LR +IV+ TPGR+
Sbjct: 91 QALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRV 149
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
D ++ R ++ +LDEAD + GF+ + +I +P T
Sbjct: 150 FDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTT 194
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVL 301
Q V+ +AT P V + + R P + + E I+Q V + E+ K + L ++
Sbjct: 195 QVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 254
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ +IF N ++ + L L + ++ Q++R+ + GS IL+
Sbjct: 255 DSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILI 314
Query: 362 A 362
+
Sbjct: 315 S 315
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 187/393 (47%), Gaps = 60/393 (15%)
Query: 1429 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQ-SLPKIARMEDADQGPYAII 1485
IQ +A+P+ L N R++IG +++G+GKT AF L +L + S+PK P AI
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK----------PQAIC 194
Query: 1486 MAPTRELAQQIEEETNKFG------TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
+AP+RELA+QI + + G T GI+ + G ++ +IVI TPG
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----------KIDAQIVIGTPG 244
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 1599
++D+++ R L VLDEAD M+D D + M + +L P
Sbjct: 245 TVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGD-----QSMRIKHLLP---------- 289
Query: 1600 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-ILS 1658
+ Q V+F+AT VE+ A + + + + E I+Q+ S
Sbjct: 290 ---------RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS 340
Query: 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718
E+ K L+E+ IIF +K A+ +A+ + G+ L G QR+ +
Sbjct: 341 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIM 400
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKE 1772
+S + G+ +LV T+V RGID+ V++V+NYDM + Y HRIGRTGR G+
Sbjct: 401 DSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 460
Query: 1773 GLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPE 1805
G++++F S + Q P++ P +
Sbjct: 461 GVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 185/388 (47%), Gaps = 60/388 (15%)
Query: 754 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQ-SLPKIARMEDADQGPYAII 810
IQ +A+P+ L N R++IG +++G+GKT AF L +L + S+PK P AI
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK----------PQAIC 194
Query: 811 MAPTRELAQQIEEETNKFG------TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
+AP+RELA+QI + + G T GI+ + G ++ +IVI TPG
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----------KIDAQIVIGTPG 244
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 924
++D+++ R L VLDEAD M+D D + M + +L P
Sbjct: 245 TVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGD-----QSMRIKHLLP---------- 289
Query: 925 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-ILS 983
+ Q V+F+AT VE+ A + + + + E I+Q+ S
Sbjct: 290 ---------RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQS 340
Query: 984 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043
E+ K L+E+ IIF +K A+ +A+ + G+ L G QR+ +
Sbjct: 341 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIM 400
Query: 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKE 1097
+S + G+ +LV T+V RGID+ V++V+NYDM + Y HRIGRTGR G+
Sbjct: 401 DSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 460
Query: 1098 GLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
G++++F S + Q P+T
Sbjct: 461 GVSINFVHDKKSWEEMNAIQEYFQRPIT 488
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 29/149 (19%)
Query: 13 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQ-SLPKIARMEDADQGPYAII 69
IQ +A+P+ L N R++IG +++G+GKT AF L +L + S+PK P AI
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK----------PQAIC 194
Query: 70 MAPTRELAQQIEEETNKFG------TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
+AP+RELA+QI + + G T GI+ + G ++ +IVI TPG
Sbjct: 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----------KIDAQIVIGTPG 244
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMID 152
++D+++ R L VLDEAD M+D
Sbjct: 245 TVMDLMKRRQLDARDIKVFVLDEADNMLD 273
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY-ILSEQDKRKKLMEVL 301
Q V+F+AT VE+ A + + + + E I+Q+ SE+ K L+E+
Sbjct: 293 QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
IIF +K A+ +A+ + G+ L G QR+ ++S + G+ +L+
Sbjct: 353 GLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLV 412
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
Length = 479
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 151 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 899
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 202 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
+I +P + Q ++F+AT +V + A+ +
Sbjct: 257 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 291
Query: 960 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 292 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 351
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 352 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
Query: 1079 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 412 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 447
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 151 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 1574
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 202 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
+I +P + Q ++F+AT +V + A+ +
Sbjct: 257 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 291
Query: 1635 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 292 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 351
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 352 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 411
Query: 1754 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 412 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 447
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 160
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 215
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVL 301
Q ++F+AT +V + A+ + P + + + + I+Q + S +D++ + L +
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY 328
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+IF + +K A LA L K G+ L G EQR + + G + +L+
Sbjct: 329 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 388
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 899
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 189
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
+I +P + Q ++F+AT +V + A+ +
Sbjct: 190 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 224
Query: 960 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 284
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 285 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
Query: 1079 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 345 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 380
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 1574
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 189
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
+I +P + Q ++F+AT +V + A+ +
Sbjct: 190 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 224
Query: 1635 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 284
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 285 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 344
Query: 1754 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 345 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 380
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 93
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 148
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVL 301
Q ++F+AT +V + A+ + P + + + + I+Q + S +D++ + L +
Sbjct: 202 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY 261
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+IF + +K A LA L K G+ L G EQR + + G + +L+
Sbjct: 262 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 321
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 100 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 150
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 899
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 151 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 205
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
+I +P + Q ++F+AT +V + A+ +
Sbjct: 206 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 240
Query: 960 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 241 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 300
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 301 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 360
Query: 1079 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 361 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 396
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 193/398 (48%), Gaps = 55/398 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 100 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 150
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 1574
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 151 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 205
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
+I +P + Q ++F+AT +V + A+ +
Sbjct: 206 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 240
Query: 1635 PATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
P + + + + I+Q + S +D++ + L + +IF + +K A LA
Sbjct: 241 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 300
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 301 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 360
Query: 1754 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 361 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 396
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 59 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 109
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 110 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 164
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 165 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 197
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-KKLMEVL 301
Q ++F+AT +V + A+ + P + + + + I+Q + S +D++ + L +
Sbjct: 218 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY 277
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+IF + +K A LA L K G+ L G EQR + + G + +L+
Sbjct: 278 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 337
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 194/398 (48%), Gaps = 55/398 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 121 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 171
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 899
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 172 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 226
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
+I +P + Q ++F+AT +V + A+ +
Sbjct: 227 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 261
Query: 960 PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAK 1018
P + + + + I+Q + S +D++ + + L + +IF + +K A LA
Sbjct: 262 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 321
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 322 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 381
Query: 1079 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 382 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 417
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 194/398 (48%), Gaps = 55/398 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 121 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 171
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI-DMGFEPD 1574
L R + ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 172 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 226
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
+I +P + Q ++F+AT +V + A+ +
Sbjct: 227 SIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 261
Query: 1635 PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAK 1693
P + + + + I+Q + S +D++ + + L + +IF + +K A LA
Sbjct: 262 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 321
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 322 ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLP 381
Query: 1754 ------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
E Y HRIGRTGR GK GLAV+ D H
Sbjct: 382 VDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV--DSKH 417
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 80 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 130
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 131 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 185
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 186 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 218
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q ++F+AT +V + A+ + P + + + + I+Q + S +D++ + + L
Sbjct: 239 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLY 298
Query: 303 RGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ +IF + +K A LA L K G+ L G EQR + + G + +L+
Sbjct: 299 GAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLV 358
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+K+ L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPI--- 59
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
++A ++ + P A+++ PTRELA Q+ E L + V V GG +Q
Sbjct: 60 ---AERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQK 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 175 S-------------------------RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+K+ L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPI--- 59
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
++A ++ + P A+++ PTRELA Q+ E L + V V GG +Q
Sbjct: 60 ---AERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQK 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 175 S-------------------------RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+ ++A ++ + P
Sbjct: 20 GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------ERLAPSQERGRKP 73
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+++ PTRELA Q+ E L + V V GG +Q L G + V+ATPGR
Sbjct: 74 RALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
+D L L L++ VLDEAD M+ MGFE +V+ +L P +
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS---------------- 175
Query: 186 ANYNSKKKYRQTVMFTATMP 205
RQT++F+AT+P
Sbjct: 176 ---------RQTLLFSATLP 186
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 228 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
E ++ A ++ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 162 EEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+K+ L EILE + G PTPI+ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPI--- 59
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
++A ++ + P A+++ PTRELA Q+ E L + V V GG +Q
Sbjct: 60 ---AERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQK 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 175 S-------------------------RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 124/236 (52%), Gaps = 33/236 (13%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+K+ L EILE + G PTPI+ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPI--- 59
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
++A ++ + P A+++ PTRELA Q+ E L + V V GG +Q
Sbjct: 60 ---AERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQK 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 115 EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP 174
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 175 S-------------------------RQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G PTPI+ A+P+ L+ +D+IG A TG+GKTLAF LP+ ++A ++ + P
Sbjct: 20 GLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIA------ERLAPSQERGRKP 73
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+++ PTRELA Q+ E L + V V GG +Q L G + V+ATPGR
Sbjct: 74 RALVLTPTRELALQVASELTAVAPHL--KVVAVYGGTGYGKQKEALLRGADAVVATPGRA 131
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLL 185
+D L L L++ VLDEAD M+ MGFE +V+ +L P +
Sbjct: 132 LDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS---------------- 175
Query: 186 ANYNSKKKYRQTVMFTATMP 205
RQT++F+AT+P
Sbjct: 176 ---------RQTLLFSATLP 186
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 228 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
E ++ A ++ RQT++F+AT+P +RLA Y++ P + +
Sbjct: 162 EEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 1644 GKPTERIEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702
G +E I Q V + E DKR L+++LN G ++FV KKGAD L L GY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73
Query: 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1762
++HG + Q RE AL+ + G ILVAT VA RG+DI +V VIN+D+ IE+Y HR
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR 133
Query: 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQH 1814
IGRTGR G GLA SF + + ++ DL +++ + P L N H
Sbjct: 134 IGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-QEVPSWLENMAYEHH 184
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 969 GKPTERIEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027
G +E I Q V + E DKR L+++LN G ++FV KKGAD L L GY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73
Query: 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1087
++HG + Q RE AL+ + G ILVAT VA RG+DI +V VIN+D+ IE+Y HR
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR 133
Query: 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
IGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 134 IGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 275 GKPTERIEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 333
G +E I Q V + E DKR L+++LN G ++FV KKGAD L L GY
Sbjct: 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73
Query: 334 CTLHGGKGQEQRELALNSLKGGSKDILMA 362
++HG + Q RE AL+ + G IL+A
Sbjct: 74 TSIHGDRSQRDREEALHQFRSGKSPILVA 102
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 3/171 (1%)
Query: 1637 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 1696
+Y S+G + + Q V + E+ K L+E L + PV+IF +K D + + L
Sbjct: 17 NLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLL 75
Query: 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1756
G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D + VINYDM + I
Sbjct: 76 LKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEI 135
Query: 1757 EDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1806
E+Y HRIGRTG +G G+A +F K D + DLK +++ + PP L
Sbjct: 136 ENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAK-QKVPPVL 185
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 2/162 (1%)
Query: 962 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 1021
+Y S+G + + Q V + E+ K L+E L + PV+IF +K D + + L
Sbjct: 17 NLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLL 75
Query: 1022 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1081
G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D + VINYDM + I
Sbjct: 76 LKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEI 135
Query: 1082 EDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1122
E+Y HRIGRTG +G G+A +F K D + DLK +++ +
Sbjct: 136 ENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEA 177
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 268 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
+Y S+G + + Q V + E+ K L+E L + PV+IF +K D + + L
Sbjct: 17 NLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLL 75
Query: 328 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
G A +HGGK QE+R A+ + + G KD+L+A
Sbjct: 76 LKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 110
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 42/233 (18%)
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP---LLVWIQSLPKI 796
L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P L+V ++ +P+
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 124
Query: 797 ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC 856
G +I++PTRELA Q + T L++GG +R + +L G
Sbjct: 125 -------NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 857 EIVIATPGRLIDVLENR--YLVLN-QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
I++ATPGRL+D ++N ++ N QC +V+DEADR++D+GFE ++++I++ +P
Sbjct: 178 NIIVATPGRLLDHMQNTPGFMYKNLQC--LVIDEADRILDVGFEEELKQIIKLLPT---- 231
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 232 ---------------------RRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 42/233 (18%)
Query: 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP---LLVWIQSLPKI 1471
L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P L+V ++ +P+
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR- 124
Query: 1472 ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC 1531
G +I++PTRELA Q + T L++GG +R + +L G
Sbjct: 125 -------NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 1532 EIVIATPGRLIDVLENR--YLVLN-QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
I++ATPGRL+D ++N ++ N QC +V+DEADR++D+GFE ++++I++ +P
Sbjct: 178 NIIVATPGRLLDHMQNTPGFMYKNLQC--LVIDEADRILDVGFEEELKQIIKLLPT---- 231
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 232 ---------------------RRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 108/172 (62%), Gaps = 16/172 (9%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP---LLVWIQSLPKIARM 58
I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P L+V ++ +P+
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR---- 124
Query: 59 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 118
G +I++PTRELA Q + T L++GG +R + +L G I+
Sbjct: 125 ----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINII 180
Query: 119 IATPGRLIDVLENR--YLVLN-QCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
+ATPGRL+D ++N ++ N QC +V+DEADR++D+GFE ++++I++ +P
Sbjct: 181 VATPGRLLDHMQNTPGFMYKNLQC--LVIDEADRILDVGFEEELKQIIKLLP 230
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 34/243 (13%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL+
Sbjct: 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81
Query: 785 PLLVWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
P+ L + R++ + G +I++PTRELA Q E K G L++GG
Sbjct: 82 PV------LEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVL-ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+ + R+ I++ TPGRL+ + E +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 963 VYI 965
V++
Sbjct: 230 VWV 232
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 34/243 (13%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL+
Sbjct: 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81
Query: 1460 PLLVWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
P+ L + R++ + G +I++PTRELA Q E K G L++GG
Sbjct: 82 PV------LEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVL-ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+ + R+ I++ TPGRL+ + E +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 1638 VYI 1640
V++
Sbjct: 230 VWV 232
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 34/204 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME-D 60
+++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL+P+ L + R++
Sbjct: 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV------LEALYRLQWT 93
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G +I++PTRELA Q E K G L++GG + + R+ I++
Sbjct: 94 STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVC 152
Query: 121 TPGRLIDVL-ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 179
TPGRL+ + E +VLDEADR++DMGF + ++E +P
Sbjct: 153 TPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------ 200
Query: 180 DENKLLANYNSKKKYRQTVMFTAT 203
K RQT++F+AT
Sbjct: 201 -------------KKRQTLLFSAT 211
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
K RQT++F+AT +V+ LAR L+ P V++
Sbjct: 201 KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 85/153 (55%)
Query: 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026
+ G T IE V + E++K L +VL IIF K+ + L L+ LGY
Sbjct: 2 AAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP 61
Query: 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1086
+HGG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y H
Sbjct: 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVH 121
Query: 1087 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
R GRTGRAG +G A+SF T + D+++ +
Sbjct: 122 RTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 85/153 (55%)
Query: 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701
+ G T IE V + E++K L +VL IIF K+ + L L+ LGY
Sbjct: 2 AAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP 61
Query: 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761
+HGG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y H
Sbjct: 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVH 121
Query: 1762 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
R GRTGRAG +G A+SF T + D+++ +
Sbjct: 122 RTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%)
Query: 273 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 332
+ G T IE V + E++K L +VL IIF K+ + L L+ LGY
Sbjct: 2 AAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP 61
Query: 333 ACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+HGG QE R +N K G L+A
Sbjct: 62 CDKIHGGMIQEDRFDVMNEFKRGEYRYLVA 91
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL-- 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 848
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 -------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 115
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 116 IMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
Query: 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
K RQ ++++AT P +V++ S+L +P
Sbjct: 176 -------------------------KNRQILLYSATFPLSVQKFMNSHLEKP 202
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL-- 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQ 1523
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 -------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 115
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 116 IMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
Query: 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
K RQ ++++AT P +V++ S+L +P
Sbjct: 176 -------------------------KNRQILLYSATFPLSVQKFMNSHLEKP 202
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 35/205 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL R++
Sbjct: 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL---------ERLDLK 68
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+++ PTRELA Q+ + + + G + + GG + + RL +VIA
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMP 205
K RQ ++++AT P
Sbjct: 176 ------------KNRQILLYSATFP 188
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 709 IFREDYSITIKGGKVPDPVRNWK----EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ 764
R + I ++G +PDP+ ++ E + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 6 FLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH 65
Query: 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824
R+++ A TGSGKTLAF +P+L+ ++ + A++G A+I++PTRELA QI E
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLK--------QPANKGFRALIISPTRELASQIHRE 117
Query: 825 TNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCT 881
K G R ++ ++ ++ G + +I++ TP RLI +L+ + L
Sbjct: 118 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 177
Query: 882 YIVLDEADRMIDMG 895
++V+DE+D++ + G
Sbjct: 178 WLVVDESDKLFEDG 191
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 110/194 (56%), Gaps = 15/194 (7%)
Query: 1384 IFREDYSITIKGGKVPDPVRNWK----EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ 1439
R + I ++G +PDP+ ++ E + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 6 FLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH 65
Query: 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499
R+++ A TGSGKTLAF +P+L+ ++ + A++G A+I++PTRELA QI E
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLK--------QPANKGFRALIISPTRELASQIHRE 117
Query: 1500 TNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCT 1556
K G R ++ ++ ++ G + +I++ TP RLI +L+ + L
Sbjct: 118 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 177
Query: 1557 YIVLDEADRMIDMG 1570
++V+DE+D++ + G
Sbjct: 178 WLVVDESDKLFEDG 191
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 11/152 (7%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ PTPIQ QAIP+ L R+++ A TGSGKTLAF +P+L+ ++ + A++G
Sbjct: 48 GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK--------QPANKGF 99
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIVIATPGR 124
A+I++PTRELA QI E K G R ++ ++ ++ G + +I++ TP R
Sbjct: 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159
Query: 125 LIDVLENRY--LVLNQCTYIVLDEADRMIDMG 154
LI +L+ + L ++V+DE+D++ + G
Sbjct: 160 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V + + L ++L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 20 VYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 75
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 76 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 130
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 131 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 190 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILV 223
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V + + L ++L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 20 VYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 75
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 76 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 130
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 131 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 190 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILV 223
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ EP+ IQ++AI ++ D++ A++G+GKT F S+ + R++ + + P
Sbjct: 40 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---------SIAALQRIDTSVKAP 90
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+++APTRELA QI++ + I+ +GG S E LR +IV+ TPGR+
Sbjct: 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRV 149
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
D ++ R ++ +LDEAD M+ GF+ + +I +P T
Sbjct: 150 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 68
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 69 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 124 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 183 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILV 216
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---- 68
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
S+ + R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 69 -----SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 123
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 124 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+P T Q V+ +ATMP V + ++R P + +
Sbjct: 183 LPPTT-------------------------QVVLLSATMPNDVLEVTTKFMRNPVRILV 216
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 10/165 (6%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ EP+ IQ++AI ++ D++ A++G+GKT F S+ + R++ + + P
Sbjct: 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---------SIAALQRIDTSVKAP 83
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+++APTRELA QI++ + I+ +GG S E LR +IV+ TPGR+
Sbjct: 84 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRV 142
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
D ++ R ++ +LDEAD M+ GF+ + +I +P T
Sbjct: 143 FDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To
Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
I+FV +++ LA L + G N C L G Q +R A+ L G ++LVATDVA RG
Sbjct: 34 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93
Query: 1064 IDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
IDI DVS V N+DM +S + Y HRIGRT RAG++G A+S D HL I P
Sbjct: 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD-HLLLGKVGRYIEEP 152
Query: 1124 VTGR 1127
+ R
Sbjct: 153 IKAR 156
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
I+FV +++ LA L + G N C L G Q +R A+ L G ++LVATDVA RG
Sbjct: 34 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93
Query: 1739 IDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1798
IDI DVS V N+DM +S + Y HRIGRT RAG++G A+S D HL I P
Sbjct: 94 IDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD-HLLLGKVGRYIEEP 152
Query: 1799 V 1799
+
Sbjct: 153 I 153
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 310 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
I+FV +++ LA L + G N C L G Q +R A+ L G ++L+A
Sbjct: 34 IVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVA 86
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 35/240 (14%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 89 L---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR 139
Query: 847 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199
Query: 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+ + Q V+ +ATMP V + + ++R P + +
Sbjct: 200 KLNTS-------------------------IQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 35/240 (14%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 89 L---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR 139
Query: 1522 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199
Query: 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+ + Q V+ +ATMP V + + ++R P + +
Sbjct: 200 KLNTS-------------------------IQVVLLSATMPTDVLEVTKKFMRDPIRILV 234
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E +
Sbjct: 49 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL---------QQLEIEFKET 99
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGR 124
A+++APTRELAQQI++ G +G +GG + + +L+ IV+ TPGR
Sbjct: 100 QALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR 159
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
+ D+L RYL VLDEAD M+ GF+ + +I +
Sbjct: 160 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+ Q ++E+ K L + +R IIF N + ++LAK + +LGY+ +H
Sbjct: 19 VTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKM 78
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
QE R + + G LV TD+ RGIDI+ V++VIN+D K E Y HRIGR+GR
Sbjct: 79 RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 138
Query: 1095 GKEGLAVSFCTKDD 1108
G GLA++ T DD
Sbjct: 139 GHLGLAINLITYDD 152
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 74/134 (55%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+ Q ++E+ K L + +R IIF N + ++LAK + +LGY+ +H
Sbjct: 19 VTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKM 78
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
QE R + + G LV TD+ RGIDI+ V++VIN+D K E Y HRIGR+GR
Sbjct: 79 RQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 138
Query: 1770 GKEGLAVSFCTKDD 1783
G GLA++ T DD
Sbjct: 139 GHLGLAINLITYDD 152
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
+ Q ++E+ K L + +R IIF N + ++LAK + +LGY+ +H
Sbjct: 19 VTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKM 78
Query: 341 GQEQRELALNSLKGG 355
QE R + + G
Sbjct: 79 RQEHRNRVFHDFRNG 93
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 718 IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 777
+KG V +++ L E+L I G+ P+ +Q + IP + D++ A++G G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMG 63
Query: 778 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRT 836
KT F+L L ++E ++M TRELA QI +E +F + ++
Sbjct: 64 KTAVFVLATL---------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114
Query: 837 VLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-M 894
+ GGLS ++ L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ +
Sbjct: 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 174
Query: 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
DVQ+I P +Q +MF+AT+ + + R
Sbjct: 175 DMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCR 209
Query: 955 SYLRRPATVYI 965
+++ P +++
Sbjct: 210 KFMQDPMEIFV 220
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 1393 IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 1452
+KG V +++ L E+L I G+ P+ +Q + IP + D++ A++G G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMG 63
Query: 1453 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRT 1511
KT F+L L ++E ++M TRELA QI +E +F + ++
Sbjct: 64 KTAVFVLATL---------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114
Query: 1512 VLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-M 1569
+ GGLS ++ L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ +
Sbjct: 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 174
Query: 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
DVQ+I P +Q +MF+AT+ + + R
Sbjct: 175 DMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCR 209
Query: 1630 SYLRRPATVYI 1640
+++ P +++
Sbjct: 210 KFMQDPMEIFV 220
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 79
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGC-EIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 139
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMP 167
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 140 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP 188
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 38/231 (16%)
Query: 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798
I+E I+ + + +PT IQ + IP L+ +G ++TG+GKT A+LLP+ I+ P+ A
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIK--PERAE 72
Query: 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRL 854
++ A+I APTRELA QI ET K I ++GG +++ +L +
Sbjct: 73 VQ-------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNV 125
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
IVI TPGR+ D + + L ++ +V+DEAD +D GF DV +I P
Sbjct: 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXP------ 179
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
K Q ++F+AT+P ++ + Y P V++
Sbjct: 180 -------------------KDLQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 38/231 (16%)
Query: 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 1473
I+E I+ + + +PT IQ + IP L+ +G ++TG+GKT A+LLP+ I+ P+ A
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIK--PERAE 72
Query: 1474 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRL 1529
++ A+I APTRELA QI ET K I ++GG +++ +L +
Sbjct: 73 VQ-------AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNV 125
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
IVI TPGR+ D + + L ++ +V+DEAD +D GF DV +I P
Sbjct: 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXP------ 179
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
K Q ++F+AT+P ++ + Y P V++
Sbjct: 180 -------------------KDLQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 93/170 (54%), Gaps = 13/170 (7%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+ + + +PT IQ + IP L+ +G ++TG+GKT A+LLP+ I+ P+ A ++
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIK--PERAEVQ-- 74
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEI 117
A+I APTRELA QI ET K I ++GG +++ +L + I
Sbjct: 75 -----AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
VI TPGR+ D + + L ++ +V+DEAD +D GF DV +I P
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXP 179
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 94.7 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 35/240 (14%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V ++ + +L +L I G+ P+ IQ++AI + D+I A++G+G T F + +
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L ++E A+++APTRELAQQI+ G +G +GG +
Sbjct: 74 L---------QQIELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVR 124
Query: 847 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
+ L++ I++ TPGR+ D+L RYL VLDEAD M+ GF + I +
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQ 184
Query: 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+ N N+ Q V+ +ATMP V + ++R P + +
Sbjct: 185 XL--------------------NSNT-----QVVLLSATMPSDVLEVTXXFMRDPIRILV 219
Score = 94.7 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 35/240 (14%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V ++ + +L +L I G+ P+ IQ++AI + D+I A++G+G T F + +
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L ++E A+++APTRELAQQI+ G +G +GG +
Sbjct: 74 L---------QQIELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVR 124
Query: 1522 EQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+ L++ I++ TPGR+ D+L RYL VLDEAD M+ GF + I +
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQ 184
Query: 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+ N N+ Q V+ +ATMP V + ++R P + +
Sbjct: 185 XL--------------------NSNT-----QVVLLSATMPSDVLEVTXXFMRDPIRILV 219
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ P+ IQ++AI + D+I A++G+G T F + +L ++E
Sbjct: 34 GFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISIL---------QQIELDLXAT 84
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGR 124
A+++APTRELAQQI+ G +G +GG + + L++ I++ TPGR
Sbjct: 85 QALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGR 144
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
+ D+L RYL VLDEAD M+ GF + I + +
Sbjct: 145 VFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXL------------------ 186
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILE 211
N N+ Q V+ +ATM P+ +LE
Sbjct: 187 --NSNT-----QVVLLSATM-PSDVLE 205
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 1770 GKEGLAVSFCT-KDDSHLFYDLKQMMISSPVSTCPPEL 1806
G +GLA++F + ++D+ + D+ Q +S P E+
Sbjct: 126 GTKGLAITFVSDENDAKILNDV-QDRFEVNISELPDEI 162
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 66 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 125
Query: 1095 GKEGLAVSFCT-KDDSHLFYDLK 1116
G +GLA++F + ++D+ + D++
Sbjct: 126 GTKGLAITFVSDENDAKILNDVQ 148
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 65
Query: 341 GQEQRELALNSLKGGSKDILMA 362
QE+R K + IL+A
Sbjct: 66 PQEERLSRYQQFKDFQRRILVA 87
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 43/231 (18%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 785
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 78
Query: 786 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 844
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 79 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 132
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKI 903
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 133 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 187
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
++P K Q V+F+AT AV + A+
Sbjct: 188 KRFLP-------------------------KDTQLVLFSATFADAVRQYAK 213
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 43/231 (18%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLP 1460
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF--- 78
Query: 1461 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLS 1519
SL + R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 79 ------SLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE 132
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKI 1578
+ +Q + ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 133 KNKQ-----INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 187
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
++P K Q V+F+AT AV + A+
Sbjct: 188 KRFLP-------------------------KDTQLVLFSATFADAVRQYAK 213
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 17/154 (11%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF SL + R+
Sbjct: 37 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---------SLTMLTRVN 87
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV-GGLSREEQGFRLRLGCEIV 118
D P AI +AP+RELA+Q E + G I + L+V + +Q + +++
Sbjct: 88 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ-----INAQVI 142
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 152
+ TPG ++D++ + + L + VLDEAD M+D
Sbjct: 143 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 176
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 983 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 18 NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 77
Query: 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1096
++ + G +L+ T+V RGIDI VSMV+NYD +A D Y HRIGRTGR G+
Sbjct: 78 IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 137
Query: 1097 EGLAVSFCTKDDS 1109
+G+A+SF +S
Sbjct: 138 KGVAISFVHDKNS 150
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 6/133 (4%)
Query: 1658 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 18 NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 77
Query: 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1771
++ + G +L+ T+V RGIDI VSMV+NYD +A D Y HRIGRTGR G+
Sbjct: 78 IDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 137
Query: 1772 EGLAVSFCTKDDS 1784
+G+A+SF +S
Sbjct: 138 KGVAISFVHDKNS 150
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 289 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 348
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 18 NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 77
Query: 349 LNSLKGGSKDILMA 362
++ + G +L+
Sbjct: 78 IDDFREGRSKVLIT 91
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 983 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 20 NEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 79
Query: 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1096
++ + G +L+ T+V RGIDI VS V+NYD +A D Y HRIGRTGR G+
Sbjct: 80 IDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGR 139
Query: 1097 EGLAVSFCTKDDS 1109
+G+A+SF +S
Sbjct: 140 KGVAISFVHDKNS 152
Score = 87.0 bits (214), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 1658 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 20 NEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 79
Query: 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1771
++ + G +L+ T+V RGIDI VS V+NYD +A D Y HRIGRTGR G+
Sbjct: 80 IDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGR 139
Query: 1772 EGLAVSFCTKDDS 1784
+G+A+SF +S
Sbjct: 140 KGVAISFVHDKNS 152
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 289 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 348
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 20 NEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 79
Query: 349 LNSLKGGSKDILMA 362
++ + G +L+
Sbjct: 80 IDDFREGRSKVLIT 93
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 And
Ip6
Length = 188
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 983 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 19 NEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 78
Query: 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1096
++ + G +L+ T+V RGIDI VS V+NYD +A D Y HRIGRTGR G+
Sbjct: 79 IDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGR 138
Query: 1097 EGLAVSFCTKDDS 1109
+G+A+SF +S
Sbjct: 139 KGVAISFVHDKNS 151
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 1658 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 19 NEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 78
Query: 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD---MAKSIED---YTHRIGRTGRAGK 1771
++ + G +L+ T+V RGIDI VS V+NYD +A D Y HRIGRTGR G+
Sbjct: 79 IDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGR 138
Query: 1772 EGLAVSFCTKDDS 1784
+G+A+SF +S
Sbjct: 139 KGVAISFVHDKNS 151
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 289 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 348
+E DK L E+ IIFV KK A+VL L+ G+ LHG ++R+
Sbjct: 19 NEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 78
Query: 349 LNSLKGGSKDILMA 362
++ + G +L+
Sbjct: 79 IDDFREGRSKVLIT 92
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F
Sbjct: 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF------ 78
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 847
S + + + +I+APTRE+A QI G + G+ + +GG +
Sbjct: 79 ---STIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 135
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEY 906
RL+ C I + +PGR+ ++E YL +LDEAD++++ G F+ + I
Sbjct: 136 DKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI--- 191
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
Y+S +Q + +AT P + Y+R P V +
Sbjct: 192 ----------------------YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229
Query: 967 S 967
S
Sbjct: 230 S 230
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 37/241 (15%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F
Sbjct: 25 DFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF------ 78
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 1522
S + + + +I+APTRE+A QI G + G+ + +GG +
Sbjct: 79 ---STIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 135
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEY 1581
RL+ C I + +PGR+ ++E YL +LDEAD++++ G F+ + I
Sbjct: 136 DKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI--- 191
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
Y+S +Q + +AT P + Y+R P V +
Sbjct: 192 ----------------------YSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229
Query: 1642 S 1642
S
Sbjct: 230 S 230
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ P+P+Q +AIP+G D+I A++G+GKT F S + + +
Sbjct: 43 GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF---------STIALDSLVLENLST 93
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
+I+APTRE+A QI G + G+ + +GG + RL+ C I + +PGR
Sbjct: 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGR 152
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVT 169
+ ++E YL +LDEAD++++ G F+ + I +P +
Sbjct: 153 IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPAS 198
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna
Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna
Helicase
Length = 175
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 980 YILSEQ--DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037
Y+L E DK + L + IIF ++ A L + + G+ L G E
Sbjct: 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVE 71
Query: 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRT 1091
QR + + G + +L+ T+V RGID+K V++V+N+D+ E Y HRIGRT
Sbjct: 72 QRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRT 131
Query: 1092 GRAGKEGLAVSFCTKDD 1108
GR GK+GLA + D+
Sbjct: 132 GRFGKKGLAFNMIEVDE 148
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 1655 YILSEQ--DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712
Y+L E DK + L + IIF ++ A L + + G+ L G E
Sbjct: 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVE 71
Query: 1713 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRT 1766
QR + + G + +L+ T+V RGID+K V++V+N+D+ E Y HRIGRT
Sbjct: 72 QRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRT 131
Query: 1767 GRAGKEGLAVSFCTKDD 1783
GR GK+GLA + D+
Sbjct: 132 GRFGKKGLAFNMIEVDE 148
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The
C-Terminal Reca Domain, The Dimerization Domain, And The
Rna Binding Domain
Length = 300
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
++F K + +A+GL +LG+ A LHG Q +RE + + + G +LVATDVA RG
Sbjct: 32 MVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91
Query: 1064 IDIKDVSMVINYDMAKSIEDYTH 1086
+DI V +V++Y M E Y H
Sbjct: 92 LDIPQVDLVVHYRMPDRAEAYQH 114
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
++F K + +A+GL +LG+ A LHG Q +RE + + + G +LVATDVA RG
Sbjct: 32 MVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91
Query: 1739 IDIKDVSMVINYDMAKSIEDYTH 1761
+DI V +V++Y M E Y H
Sbjct: 92 LDIPQVDLVVHYRMPDRAEAYQH 114
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 310 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
++F K + +A+GL +LG+ A LHG Q +RE + + + G +L+A
Sbjct: 32 MVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVA 84
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
+IF N ++ + L L + ++ Q++R+ + + GS IL++TD+ RG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 1739 IDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1798
ID++ VS+VINYD+ + E+Y HRIGR GR G++G+A++F T +D +L++ S+
Sbjct: 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY-STQ 152
Query: 1799 VSTCPPEL 1806
+ P ++
Sbjct: 153 IEELPSDI 160
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
+IF N ++ + L L + ++ Q++R+ + + GS IL++TD+ RG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 1064 IDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
ID++ VS+VINYD+ + E+Y HRIGR GR G++G+A++F T +D
Sbjct: 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 20/172 (11%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 151 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 892
L R + ++ +IVI TPG ++D +++ + VLDEAD MI
Sbjct: 202 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 20/172 (11%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 151 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 1567
L R + ++ +IVI TPG ++D +++ + VLDEAD MI
Sbjct: 202 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 160
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 215
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 20/172 (11%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 841
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 892
L R + ++ +IVI TPG ++D +++ + VLDEAD MI
Sbjct: 135 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 94/172 (54%), Gaps = 20/172 (11%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVG 1516
+L +++E A++ P + ++PT ELA Q + E+ KF L + +
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 1567
L R + ++ +IVI TPG ++D +++ + VLDEAD MI
Sbjct: 135 KLERGQ-----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 5 IGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E A+
Sbjct: 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPAN 93
Query: 63 QGPYAIIMAPTRELAQQ---IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P + ++PT ELA Q + E+ KF L + + L R + ++ +IVI
Sbjct: 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-----KISEQIVI 148
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMI 151
TPG ++D +++ + VLDEAD MI
Sbjct: 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 153/392 (39%), Gaps = 82/392 (20%)
Query: 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 799
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+ M
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLM 78
Query: 800 ED-ADQ----GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+D DQ G A + T+ QQ+E T G RT +
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVMT-------GCRTGQI--------------- 116
Query: 855 GCEIVIATPGRLIDVLEN--RYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKILEYM 907
++ P RL+ L+N +L + +DEA + G F P+ + ++ +
Sbjct: 117 --RLLYIAPERLM--LDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
P T A+D + + V P ++ I S
Sbjct: 173 PTLPFMALTATADDTTR-----------QDIVRLLGLNDPLIQ--------------ISS 207
Query: 968 VGKPTERIEQIVYILSEQDK-RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026
+P R Y+L E+ K +LM + K II+ N + + A L+ G +
Sbjct: 208 FDRPNIR-----YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGIS 262
Query: 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1086
A H G R + I+VAT G GI+ +V V+++D+ ++IE Y
Sbjct: 263 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
Query: 1087 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
TGRAG++GL ++ LFYD M
Sbjct: 323 ---ETGRAGRDGLPA------EAMLFYDPADM 345
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 153/392 (39%), Gaps = 82/392 (20%)
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 1474
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+ M
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLM 78
Query: 1475 ED-ADQ----GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+D DQ G A + T+ QQ+E T G RT +
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVMT-------GCRTGQI--------------- 116
Query: 1530 GCEIVIATPGRLIDVLEN--RYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKILEYM 1582
++ P RL+ L+N +L + +DEA + G F P+ + ++ +
Sbjct: 117 --RLLYIAPERLM--LDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
P T A+D + + V P ++ I S
Sbjct: 173 PTLPFMALTATADDTTR-----------QDIVRLLGLNDPLIQ--------------ISS 207
Query: 1643 VGKPTERIEQIVYILSEQDK-RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701
+P R Y+L E+ K +LM + K II+ N + + A L+ G +
Sbjct: 208 FDRPNIR-----YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGIS 262
Query: 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761
A H G R + I+VAT G GI+ +V V+++D+ ++IE Y
Sbjct: 263 AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQ 322
Query: 1762 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
TGRAG++GL ++ LFYD M
Sbjct: 323 ---ETGRAGRDGLPA------EAMLFYDPADM 345
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 58
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+ M
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLM 78
Query: 59 ED-ADQ----GPYAIIMAPTRELAQQIEEET 84
+D DQ G A + T+ QQ+E T
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVMT 109
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1090 RTGRAGKEGLAVSFCTKDD 1108
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1765 RTGRAGKEGLAVSFCTKDD 1783
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1090 RTGRAGKEGLAVSFCTKDD 1108
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1765 RTGRAGKEGLAVSFCTKDD 1783
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1090 RTGRAGKEGLAVSFCTKDD 1108
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%)
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
HG Q +R + K ILV TDV RG+D +V V+ + + +Y HRIG
Sbjct: 66 FHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIG 125
Query: 1765 RTGRAGKEGLAVSFCTKDD 1783
RT R+GKEG +V F KD+
Sbjct: 126 RTARSGKEGSSVLFICKDE 144
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera:
Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera:
Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera:
Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera:
Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
++F K + +A+GL +LG+ A LHG Q +RE L + + G +LVATDVA RG
Sbjct: 35 MVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94
Query: 1064 IDIKDVSMVINYDMAKSIEDYTH 1086
+DI V +V++Y + E Y H
Sbjct: 95 LDIPQVDLVVHYRLPDRAEAYQH 117
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 49/83 (59%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
++F K + +A+GL +LG+ A LHG Q +RE L + + G +LVATDVA RG
Sbjct: 35 MVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94
Query: 1739 IDIKDVSMVINYDMAKSIEDYTH 1761
+DI V +V++Y + E Y H
Sbjct: 95 LDIPQVDLVVHYRLPDRAEAYQH 117
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 310 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
++F K + +A+GL +LG+ A LHG Q +RE L + + G +L+A
Sbjct: 35 MVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 87
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 151/391 (38%), Gaps = 88/391 (22%)
Query: 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 799
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPLISLX 78
Query: 800 ED-ADQ----GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+D DQ G A + T+ QQ+E T G RT +
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVXT-------GCRTGQI--------------- 116
Query: 855 GCEIVIATPGRLIDVLEN--RYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKILEYM 907
++ P RL L+N +L + +DEA + G F P+ + ++ +
Sbjct: 117 --RLLYIAPERL--XLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
P T A+D + + V P ++ I S
Sbjct: 173 PTLPFXALTATADDTTR-----------QDIVRLLGLNDPLIQ--------------ISS 207
Query: 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK----KPVIIFVNQKKGADVLAKGLEKL 1023
+P R Y L E + K ++ L R V+ K II+ N + + A L+
Sbjct: 208 FDRPNIR-----YXLXE---KFKPLDQLXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK 259
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
G +A H G R + I+VAT G GI+ +V V+++D+ ++IE
Sbjct: 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIES 319
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114
Y TGRAG++GL ++ LFYD
Sbjct: 320 YYQ---ETGRAGRDGLPA------EAXLFYD 341
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 151/391 (38%), Gaps = 88/391 (22%)
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 1474
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPLISLX 78
Query: 1475 ED-ADQ----GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+D DQ G A + T+ QQ+E T G RT +
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVXT-------GCRTGQI--------------- 116
Query: 1530 GCEIVIATPGRLIDVLEN--RYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKILEYM 1582
++ P RL L+N +L + +DEA + G F P+ + ++ +
Sbjct: 117 --RLLYIAPERL--XLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
P T A+D + + V P ++ I S
Sbjct: 173 PTLPFXALTATADDTTR-----------QDIVRLLGLNDPLIQ--------------ISS 207
Query: 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK----KPVIIFVNQKKGADVLAKGLEKL 1698
+P R Y L E + K ++ L R V+ K II+ N + + A L+
Sbjct: 208 FDRPNIR-----YXLXE---KFKPLDQLXRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK 259
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
G +A H G R + I+VAT G GI+ +V V+++D+ ++IE
Sbjct: 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIES 319
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789
Y TGRAG++GL ++ LFYD
Sbjct: 320 YYQ---ETGRAGRDGLPA------EAXLFYD 341
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW----IQSLPKIARM 58
E GY + P Q + I L RD + V TG GK+L + +P L+ + P I+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNGLTVVVSPLISLX 78
Query: 59 ED-ADQ----GPYAIIMAPTRELAQQIEEET 84
+D DQ G A + T+ QQ+E T
Sbjct: 79 KDQVDQLQANGVAAACLNSTQTREQQLEVXT 109
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A Dna
Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A Dna
Substrate
Length = 591
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 98/413 (23%), Positives = 155/413 (37%), Gaps = 86/413 (20%)
Query: 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812
P+Q + I + + +++ V TG GK+L + LP L + +++
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------------SDGFTLVIC 91
Query: 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV------------- 859
P L E+ LGI ++ S+E + + E+V
Sbjct: 92 PLISLM----EDQLMVLKQLGISATMLNASSSKEHVKW---VHAEMVNKNSELKLIYVTP 144
Query: 860 --IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQK--ILE-YMPVTNL 912
IA + LE Y + T I +DE G F PD + IL+ P +L
Sbjct: 145 EKIAKSKMFMSRLEKAYEA-RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASL 203
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972
T A N +L + + FTA+ RP +Y KP+
Sbjct: 204 IGLTATAT--NHVLTDAQKILCIEKCFTFTAS------------FNRP-NLYYEVRQKPS 248
Query: 973 ---ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
+ IE IV +++ R + II+ +K ++ + L+ LG +A
Sbjct: 249 NTEDFIEDIVKLIN------------GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA 296
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
H E + ++VAT G GID DV VI++ M+KS+E+Y G
Sbjct: 297 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 356
Query: 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMM-ISSPVT-GRAGKEGL--AVSFC 1138
R GR K D L+Y + ISS V G++ L VS+C
Sbjct: 357 RAGRDD---------MKADCILYYGFGDIFRISSMVVMENVGQQKLYEMVSYC 400
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 137/364 (37%), Gaps = 73/364 (20%)
Query: 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487
P+Q + I + + +++ V TG GK+L + LP L + +++
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------------SDGFTLVIC 91
Query: 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV------------- 1534
P L E+ LGI ++ S+E + + E+V
Sbjct: 92 PLISLM----EDQLMVLKQLGISATMLNASSSKEHVKW---VHAEMVNKNSELKLIYVTP 144
Query: 1535 --IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQK--ILE-YMPVTNL 1587
IA + LE Y + T I +DE G F PD + IL+ P +L
Sbjct: 145 EKIAKSKMFMSRLEKAYEA-RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASL 203
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 1647
T A N +L + + FTA+ RP +Y KP+
Sbjct: 204 IGLTATAT--NHVLTDAQKILCIEKCFTFTAS------------FNRP-NLYYEVRQKPS 248
Query: 1648 ---ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
+ IE IV +++ R + II+ +K ++ + L+ LG +A
Sbjct: 249 NTEDFIEDIVKLIN------------GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA 296
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
H E + ++VAT G GID DV VI++ M+KS+E+Y G
Sbjct: 297 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESG 356
Query: 1765 RTGR 1768
R GR
Sbjct: 357 RAGR 360
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 12 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV----WIQSLPKIARMED 60
P+Q + I + + +++ V TG GK+L + LP L + P I+ MED
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMED 99
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain
Length = 494
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 986 DKRKKLM-EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG--------GKGQ 1036
DK K+++ E L R +I+F N ++ A + L K G A G G Q
Sbjct: 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405
Query: 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-- 1094
+++L L+ G ++LVAT V G+D+ +V +V+ Y+ S R GRTGR
Sbjct: 406 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465
Query: 1095 GKEGLAVSFCTKDDSHLF 1112
G+ + ++ T+D+++ +
Sbjct: 466 GRVIILMAKGTRDEAYYW 483
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 1661 DKRKKLM-EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG--------GKGQ 1711
DK K+++ E L R +I+F N ++ A + L K G A G G Q
Sbjct: 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQ 405
Query: 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-- 1769
+++L L+ G ++LVAT V G+D+ +V +V+ Y+ S R GRTGR
Sbjct: 406 REQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465
Query: 1770 GKEGLAVSFCTKDDSHLF 1787
G+ + ++ T+D+++ +
Sbjct: 466 GRVIILMAKGTRDEAYYW 483
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 13 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 72
I ++ I + + + V TG GKTL ++ IA G +++AP
Sbjct: 12 IYQEVIYAKCKETNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVLMLAP 60
Query: 73 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 132
T+ L Q E + + V + G S EE+ + ++++ATP + + L
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAG 119
Query: 133 YLVLNQCTYIVLDEADRMI 151
+ L + IV DEA R +
Sbjct: 120 RISLEDVSLIVFDEAHRAV 138
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813
I ++ I + + + V TG GKTL ++ IA G +++AP
Sbjct: 12 IYQEVIYAKCKETNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVLMLAP 60
Query: 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 873
T+ L Q E + + V + G S EE+ + ++++ATP + + L
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAG 119
Query: 874 YLVLNQCTYIVLDEADRMI 892
+ L + IV DEA R +
Sbjct: 120 RISLEDVSLIVFDEAHRAV 138
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 1429 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488
I ++ I + + + V TG GKTL ++ IA G +++AP
Sbjct: 12 IYQEVIYAKCKETNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVLMLAP 60
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
T+ L Q E + + V + G S EE+ + ++++ATP + + L
Sbjct: 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAG 119
Query: 1549 YLVLNQCTYIVLDEADRMI 1567
+ L + IV DEA R +
Sbjct: 120 RISLEDVSLIVFDEAHRAV 138
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIG-LQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
LP+ ++EII+K G + P Q +A+ G L+ ++ + TGSGKTL + ++ ++
Sbjct: 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK- 73
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
G AI + P R L + + T K +G + + G ++ +
Sbjct: 74 ----------NGGKAIYVTPLRALTNE-KYLTFKDWELIGFKVAMTSGDYDTDDAWLK-- 120
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+I+I T +L + +R LN+ Y VLDE + D P V+ +
Sbjct: 121 -NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIG-LQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
LP+ ++EII+K G + P Q +A+ G L+ ++ + TGSGKTL + ++ ++
Sbjct: 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK- 73
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
G AI + P R L + + T K +G + + G ++ +
Sbjct: 74 ----------NGGKAIYVTPLRALTNE-KYLTFKDWELIGFKVAMTSGDYDTDDAWLK-- 120
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+I+I T +L + +R LN+ Y VLDE + D P V+ +
Sbjct: 121 -NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169
Score = 39.3 bits (90), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
II+K G + P Q +A+ GL + ++ + TGSGKTL + ++ ++
Sbjct: 22 IIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------- 73
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G AI + P R L + + T K +G + + G ++ + +I+I
Sbjct: 74 ---NGGKAIYVTPLRALTNE-KYLTFKDWELIGFKVAMTSGDYDTDDAWLK---NYDIII 126
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
T +L + +R LN+ Y VLDE + D P V+ +
Sbjct: 127 TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 982 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041
+ ++K +KL E+L R K +IIF + L + K+ H +E+RE
Sbjct: 331 FNSKNKIRKLREILERHRKDKIIIFTRHNE----LVYRISKVFLIPAITHR-TSREEREE 385
Query: 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
L + G +V++ V GID+ D ++ + + S +Y R+GR R K
Sbjct: 386 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 440
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 1657 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716
+ ++K +KL E+L R K +IIF + L + K+ H +E+RE
Sbjct: 331 FNSKNKIRKLREILERHRKDKIIIFTRHNE----LVYRISKVFLIPAITHR-TSREEREE 385
Query: 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771
L + G +V++ V GID+ D ++ + + S +Y R+GR R K
Sbjct: 386 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 440
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 92/413 (22%), Positives = 168/413 (40%), Gaps = 84/413 (20%)
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
V + SGK L +P L ++A + +A +G ++ + P R LA + E K+
Sbjct: 33 AVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKW- 91
Query: 830 TPLGIRTVLVVGGL-SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887
+G+R + G SR+E LG C+I++ T + ++ NR + + +V+DE
Sbjct: 92 EKIGLRIGISTGDYESRDEH-----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146
Query: 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947
++D +IL VT ++ NK L + + +AT P
Sbjct: 147 I-HLLDSEKRGATLEIL----VTKMRR-------MNKAL----------RVIGLSATAPN 184
Query: 948 AVERL----ARSYLR--RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME--VLNRGV 999
E A Y+ RP + G + + T + + S + K ++L+E V G
Sbjct: 185 VTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENG- 243
Query: 1000 KKPVIIFVNQKKGAD--------VLAKGLEKLGYNACTLHGGKGQEQRELA--------- 1042
V++F + ++GA+ + AK +E G L +G+ R+LA
Sbjct: 244 --GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 301
Query: 1043 -----LN--------SLKGGSKDILVATDVAGRGIDIKDVSMVI-------NYDMAKSIE 1082
LN + + G+ ++VAT G+++ +++ Y +
Sbjct: 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVS 361
Query: 1083 DYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSP--VTGRAGKE 1131
+Y GR GR G + G A+ K D + +K+ + P +T + G E
Sbjct: 362 EYKQMAGRAGRPGMDERGEAIIIVGKRDREI--AVKRYIFGEPERITSKLGVE 412
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 80/391 (20%)
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
V + SGK L +P L ++A + +A +G ++ + P R LA + E K+
Sbjct: 33 AVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKW- 91
Query: 1505 TPLGIRTVLVVGGL-SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562
+G+R + G SR+E LG C+I++ T + ++ NR + + +V+DE
Sbjct: 92 EKIGLRIGISTGDYESRDEH-----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146
Query: 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622
++D +IL VT ++ NK L + + +AT P
Sbjct: 147 I-HLLDSEKRGATLEIL----VTKMRR-------MNKAL----------RVIGLSATAPN 184
Query: 1623 AVERL----ARSYLR--RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME--VLNRGV 1674
E A Y+ RP + G + + T + + S + K ++L+E V G
Sbjct: 185 VTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENG- 243
Query: 1675 KKPVIIFVNQKKGAD--------VLAKGLEKLGYNACTLHGGKGQEQRELA--------- 1717
V++F + ++GA+ + AK +E G L +G+ R+LA
Sbjct: 244 --GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 301
Query: 1718 -----LN--------SLKGGSKDILVATDVAGRGIDIKDVSMVI-------NYDMAKSIE 1757
LN + + G+ ++VAT G+++ +++ Y +
Sbjct: 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVS 361
Query: 1758 DYTHRIGRTGRAG--KEGLAVSFCTKDDSHL 1786
+Y GR GR G + G A+ K D +
Sbjct: 362 EYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 29 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 88
V + SGK L +P L ++A + +A +G ++ + P R LA + E K+
Sbjct: 33 AVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKW- 91
Query: 89 TPLGIRTVLVVGGL-SREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 146
+G+R + G SR+E LG C+I++ T + ++ NR + + +V+DE
Sbjct: 92 EKIGLRIGISTGDYESRDEH-----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb
Length = 219
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 982 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041
+ ++K +KL E+L R K +IIF + L + K+ H +E+RE
Sbjct: 96 FNSKNKIRKLREILERHRKDKIIIFTRHNE----LVYRISKVFLIPAITHR-TSREEREE 150
Query: 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
L + G +V++ V GID+ D ++ + + S +Y R+GR R K
Sbjct: 151 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 205
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 1657 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716
+ ++K +KL E+L R K +IIF + L + K+ H +E+RE
Sbjct: 96 FNSKNKIRKLREILERHRKDKIIIFTRHNE----LVYRISKVFLIPAITHR-TSREEREE 150
Query: 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771
L + G +V++ V GID+ D ++ + + S +Y R+GR R K
Sbjct: 151 ILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 205
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
E L E +E K EP IQ+ L+ A TG GKT +F L + +++
Sbjct: 39 EDFLLKEFVEFFRKC-VGEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL- 95
Query: 792 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----RE 846
A +G ++ PT L Q E K+ G+ T ++G RE
Sbjct: 96 ----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKRE 145
Query: 847 EQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
++ F L +IVI T L Y L +I +D+ D ++ +V K+L
Sbjct: 146 KENFMQNLRNFKIVITTT----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLH 199
Query: 906 YMPVT-NLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
+ +LK + E L+ + + KK ++ +F
Sbjct: 200 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
E L E +E K EP IQ+ L+ A TG GKT +F L + +++
Sbjct: 39 EDFLLKEFVEFFRKC-VGEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL- 95
Query: 1467 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----RE 1521
A +G ++ PT L Q E K+ G+ T ++G RE
Sbjct: 96 ----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKRE 145
Query: 1522 EQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
++ F L +IVI T L Y L +I +D+ D ++ +V K+L
Sbjct: 146 KENFMQNLRNFKIVITTT----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLH 199
Query: 1581 YMPVT-NLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616
+ +LK + E L+ + + KK ++ +F
Sbjct: 200 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 25/200 (12%)
Query: 8 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 67
EP IQ+ L+ A TG GKT +F L + +++ A +G
Sbjct: 55 GEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL-----------ALKGKRC 102
Query: 68 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----REEQGFRLRL-GCEIVIAT 121
++ PT L Q E K+ G+ T ++G RE++ F L +IVI T
Sbjct: 103 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITT 162
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT-NLKPDTEDAED 180
L Y L +I +D+ D ++ +V K+L + +LK + E
Sbjct: 163 T----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLHLLGFHYDLKTKSWVGEA 216
Query: 181 ENKLLANYNSKKKYRQTVMF 200
L+ + + KK ++ +F
Sbjct: 217 RGCLMVSTATAKKGKKAELF 236
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
E L E +E K EP IQ+ L+ A TG GKT +F L + +++
Sbjct: 39 EDFLLKEFVEFFRKC-VGEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL- 95
Query: 792 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----RE 846
A +G ++ PT L Q E K+ G+ T ++G RE
Sbjct: 96 ----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKRE 145
Query: 847 EQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
++ F L +IVI T L Y L +I +D+ D ++ +V K+L
Sbjct: 146 KENFMQNLRNFKIVITTT----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLH 199
Query: 906 YMPVT-NLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
+ +LK + E L+ + + KK ++ +F
Sbjct: 200 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 26/217 (11%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
E L E +E K EP IQ+ L+ A TG GKT +F L + +++
Sbjct: 39 EDFLLKEFVEFFRKC-VGEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL- 95
Query: 1467 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----RE 1521
A +G ++ PT L Q E K+ G+ T ++G RE
Sbjct: 96 ----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKRE 145
Query: 1522 EQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
++ F L +IVI T L Y L +I +D+ D ++ +V K+L
Sbjct: 146 KENFMQNLRNFKIVITTT----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLH 199
Query: 1581 YMPVT-NLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616
+ +LK + E L+ + + KK ++ +F
Sbjct: 200 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELF 236
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 25/200 (12%)
Query: 8 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 67
EP IQ+ L+ A TG GKT +F L + +++ A +G
Sbjct: 55 GEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL-----------ALKGKRC 102
Query: 68 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS-----REEQGFRLRL-GCEIVIAT 121
++ PT L Q E K+ G+ T ++G RE++ F L +IVI T
Sbjct: 103 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITT 162
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT-NLKPDTEDAED 180
L Y L +I +D+ D ++ +V K+L + +LK + E
Sbjct: 163 T----QFLSKHYRELGHFDFIFVDDVDAILKAS--KNVDKLLHLLGFHYDLKTKSWVGEA 216
Query: 181 ENKLLANYNSKKKYRQTVMF 200
L+ + + KK ++ +F
Sbjct: 217 RGCLMVSTATAKKGKKAELF 236
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 1004 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1050
I+FV + D L K +E+ L + + G+G+ R + L + + G
Sbjct: 393 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRASGD 452
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
+IL+AT VA GIDI + ++VI Y+ ++ GR GRA
Sbjct: 453 NNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRA 495
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 1679 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1725
I+FV + D L K +E+ L + + G+G+ R + L + + G
Sbjct: 393 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGXTLPAQKCVLEAFRASGD 452
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
+IL+AT VA GIDI + ++VI Y+ ++ GR GRA
Sbjct: 453 NNILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRA 495
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 983 SEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
++++K +K++E + + KK PV++ + +++L+ L+K G L+ +++ E
Sbjct: 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514
Query: 1041 LALNSLKGGSKDIL-VATDVAGRGIDIK---DVSMVINYDMAKSIEDYTHRI-----GRT 1091
+ K G K ++ +AT++AGRG DIK V+ + + + + RI GR
Sbjct: 515 IVA---KAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRA 571
Query: 1092 GRAGKEGLAVSFCTKDDSHL 1111
GR G G ++ F + +D L
Sbjct: 572 GRQGDPGESIFFLSLEDDLL 591
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 1658 SEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
++++K +K++E + + KK PV++ + +++L+ L+K G L+ +++ E
Sbjct: 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514
Query: 1716 LALNSLKGGSKDIL-VATDVAGRGIDIK---DVSMVINYDMAKSIEDYTHRI-----GRT 1766
+ K G K ++ +AT++AGRG DIK V+ + + + + RI GR
Sbjct: 515 IVA---KAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRA 571
Query: 1767 GRAGKEGLAVSFCTKDDSHL 1786
GR G G ++ F + +D L
Sbjct: 572 GRQGDPGESIFFLSLEDDLL 591
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of Rig-I
Length = 695
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1004 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1050
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 401 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 460
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 461 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 503
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1679 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1725
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 401 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 460
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 461 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 503
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1004 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1050
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 393 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 452
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 453 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 495
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1679 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1725
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 393 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 452
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 453 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 495
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1004 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1050
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 1679 IIFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQR---------ELALNSLKG-GS 1725
I+FV + D L +E KL + + G+G+ + + L++ K G
Sbjct: 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
+IL+AT VA GIDI ++VI Y+ ++ GR GRA
Sbjct: 462 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 983 SEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
++++K +K++E + + KK PV++ + +++L+ L+K G L+ +++ E
Sbjct: 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514
Query: 1041 LALNSLKGGSKDIL-VATDVAGRGIDIK---DVSMVINYDMAKSIEDYTHRI-----GRT 1091
+ K G K ++ +AT++AGRG DIK V+ + + + + RI GR
Sbjct: 515 IVA---KAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRA 571
Query: 1092 GRAGKEGLAVSFCTKDDSHL 1111
GR G G ++ F + +D L
Sbjct: 572 GRQGDPGESIFFLSLEDDLL 591
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 14/140 (10%)
Query: 1658 SEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
++++K +K++E + + KK PV++ + +++L+ L+K G L+ +++ E
Sbjct: 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAE 514
Query: 1716 LALNSLKGGSKDIL-VATDVAGRGIDIK---DVSMVINYDMAKSIEDYTHRI-----GRT 1766
+ K G K ++ +AT++AGRG DIK V+ + + + + RI GR
Sbjct: 515 IVA---KAGQKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRA 571
Query: 1767 GRAGKEGLAVSFCTKDDSHL 1786
GR G G ++ F + +D L
Sbjct: 572 GRQGDPGESIFFLSLEDDLL 591
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 1004 IIFVNQKKGADVLA------KGLEKLGYNACTLHGG---------KGQEQRELALNSLKG 1048
IIF ++ A L+ K ++G A L G EQRE+ ++ +
Sbjct: 154 IIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPXTQNEQREV-ISKFRT 212
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
G ++L+AT VA G+DIK+ ++VI Y +
Sbjct: 213 GKINLLIATTVAEEGLDIKECNIVIRYGLV 242
Score = 37.0 bits (84), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 1679 IIFVNQKKGADVLA------KGLEKLGYNACTLHGG---------KGQEQRELALNSLKG 1723
IIF ++ A L+ K ++G A L G EQRE+ ++ +
Sbjct: 154 IIFTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPXTQNEQREV-ISKFRT 212
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
G ++L+AT VA G+DIK+ ++VI Y +
Sbjct: 213 GKINLLIATTVAEEGLDIKECNIVIRYGLV 242
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 1003 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062
V++ KK ++ L L+++G LH +R + L+ G D+LV ++
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 1063 GIDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106
G+DI +VS+V D K S IGR R EG + + K
Sbjct: 514 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-EGRVIMYADK 561
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737
V++ KK ++ L L+++G LH +R + L+ G D+LV ++
Sbjct: 454 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 513
Query: 1738 GIDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
G+DI +VS+V D K S IGR R EG + + K
Sbjct: 514 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-EGRVIMYADK 561
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure Of
Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 1003 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062
V++ KK ++ L L+++G LH +R + L+ G D+LV ++
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 1063 GIDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106
G+DI +VS+V D K S IGR R EG + + K
Sbjct: 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-EGRVIMYADK 555
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737
V++ KK ++ L L+++G LH +R + L+ G D+LV ++
Sbjct: 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLRE 507
Query: 1738 GIDIKDVSMVINYDMAK-----SIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
G+DI +VS+V D K S IGR R EG + + K
Sbjct: 508 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-EGRVIMYADK 555
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
+ +HG QE+++ + G DILV+T V GID+ ++++ + +
Sbjct: 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQ 673
Query: 1085 THRI-GRTGRAGKEGLAVSFC 1104
H++ GR GR G+E ++C
Sbjct: 674 LHQLRGRVGRGGQE----AYC 690
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
+ +HG QE+++ + G DILV+T V GID+ ++++ + +
Sbjct: 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQ 673
Query: 1760 THRI-GRTGRAGKEGLAVSFC 1779
H++ GR GR G+E ++C
Sbjct: 674 LHQLRGRVGRGGQE----AYC 690
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078
EQ+E+ ++ + G ++L+AT VA G+DIK+ ++VI Y +
Sbjct: 452 EQKEV-ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV 492
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753
EQ+E+ ++ + G ++L+AT VA G+DIK+ ++VI Y +
Sbjct: 452 EQKEV-ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLV 492
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In Complex
With Atp
Length = 657
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 454 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 513
Query: 1070 SMVINYDMAK-----SIEDYTHRIGRTGR 1093
S+V D K S IGR R
Sbjct: 514 SLVAILDADKEGFLRSERSLIQTIGRAAR 542
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 454 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 513
Query: 1745 SMVINYDMAK-----SIEDYTHRIGRTGR 1768
S+V D K S IGR R
Sbjct: 514 SLVAILDADKEGFLRSERSLIQTIGRAAR 542
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1070 SMVINYDMAK-----SIEDYTHRIGRTGR 1093
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1745 SMVINYDMAK-----SIEDYTHRIGRTGR 1768
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing By
Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing By
Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1070 SMVINYDMAK-----SIEDYTHRIGRTGR 1093
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1745 SMVINYDMAK-----SIEDYTHRIGRTGR 1768
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1070 SMVINYDMAK-----SIEDYTHRIGRTGR 1093
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 455 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514
Query: 1745 SMVINYDMAK-----SIEDYTHRIGRTGR 1768
S+V D K S IGR R
Sbjct: 515 SLVAILDADKEGFLRSERSLIQTIGRAAR 543
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 480 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 539
Query: 1070 SMVINYDMAK-----SIEDYTHRIGRTGR 1093
S+V D K S IGR R
Sbjct: 540 SLVAILDADKEGFLRSERSLIQTIGRAAR 568
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
KK A+ L L++ G LH +R + L+ G D+LV ++ G+DI +V
Sbjct: 480 KKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 539
Query: 1745 SMVINYDMAK-----SIEDYTHRIGRTGR 1768
S+V D K S IGR R
Sbjct: 540 SLVAILDADKEGFLRSERSLIQTIGRAAR 568
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 1004 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSKD 1052
++F + L K +E+ L Y + G+G+ + + L S KG SKD
Sbjct: 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694
Query: 1053 --ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
+L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 1679 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSKD 1727
++F + L K +E+ L Y + G+G+ + + L S KG SKD
Sbjct: 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694
Query: 1728 --ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
+L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 695 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 1003 VIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSK 1051
++F + L K +E+ L Y + G+G+ + + L S KG SK
Sbjct: 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693
Query: 1052 D--ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
D +L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 1678 VIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSK 1726
++F + L K +E+ L Y + G+G+ + + L S KG SK
Sbjct: 634 TLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693
Query: 1727 D--ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
D +L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 746
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 1004 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSKD 1052
++F + L K +E+ L Y + G+G+ + + L S KG SKD
Sbjct: 394 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 453
Query: 1053 --ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
+L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 454 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 505
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 1679 IIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRE--LALNSLKG------GSKD 1727
++F + L K +E+ L Y + G+G+ + + L S KG SKD
Sbjct: 394 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 453
Query: 1728 --ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
+L+AT VA GIDI ++V+ Y+ + ++ GR AG + + V+
Sbjct: 454 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVT 505
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIK 1067
RE + + G SK + +AT++AGRG DIK
Sbjct: 556 REAEIVAQAGRSKTVTIATNMAGRGTDIK 584
Score = 30.8 bits (68), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIK 1742
RE + + G SK + +AT++AGRG DIK
Sbjct: 556 REAEIVAQAGRSKTVTIATNMAGRGTDIK 584
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,020,199
Number of Sequences: 62578
Number of extensions: 1866434
Number of successful extensions: 5456
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4640
Number of HSP's gapped (non-prelim): 440
length of query: 1832
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1719
effective length of database: 7,902,023
effective search space: 13583577537
effective search space used: 13583577537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)