Query psy6409
Match_columns 1832
No_of_seqs 1294 out of 6394
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0333|consensus 100.0 1E-110 2E-115 967.6 46.4 567 580-1181 97-664 (673)
2 KOG0333|consensus 100.0 1E-103 3E-108 909.0 44.4 576 1255-1832 97-673 (673)
3 KOG0951|consensus 100.0 2.7E-78 6E-83 750.4 28.2 1004 732-1823 293-1534(1674)
4 KOG0341|consensus 100.0 4.3E-75 9.3E-80 647.1 20.8 459 691-1237 132-597 (610)
5 KOG0952|consensus 100.0 1.1E-73 2.4E-78 705.4 17.6 874 746-1696 106-1174(1230)
6 KOG0331|consensus 100.0 5.7E-69 1.2E-73 649.0 33.2 364 728-1119 91-460 (519)
7 KOG0330|consensus 100.0 3.3E-68 7.2E-73 597.8 30.9 362 726-1121 59-421 (476)
8 KOG0331|consensus 100.0 2.7E-66 5.8E-71 625.9 35.1 381 1403-1812 91-477 (519)
9 KOG0330|consensus 100.0 1.2E-64 2.7E-69 569.0 31.3 363 1401-1797 59-422 (476)
10 KOG0338|consensus 100.0 1.2E-64 2.6E-69 582.9 23.6 360 727-1117 180-543 (691)
11 KOG0336|consensus 100.0 2.2E-63 4.8E-68 557.2 30.4 395 696-1119 180-584 (629)
12 KOG0341|consensus 100.0 1.5E-64 3.4E-69 562.8 20.2 415 1367-1809 133-555 (610)
13 COG0513 SrmB Superfamily II DN 100.0 2.6E-62 5.6E-67 621.7 41.6 363 728-1122 29-396 (513)
14 KOG0339|consensus 100.0 1.7E-62 3.6E-67 563.5 32.7 396 695-1119 190-587 (731)
15 PTZ00110 helicase; Provisional 100.0 2.9E-61 6.3E-66 618.1 47.3 396 695-1119 96-496 (545)
16 KOG0336|consensus 100.0 1.6E-62 3.4E-67 550.4 29.7 408 1372-1809 181-598 (629)
17 KOG0334|consensus 100.0 1.8E-62 4E-67 615.9 32.6 396 695-1119 331-732 (997)
18 PLN00206 DEAD-box ATP-dependen 100.0 1.6E-60 3.6E-65 610.1 46.1 391 701-1119 94-487 (518)
19 PTZ00110 helicase; Provisional 100.0 3.1E-60 6.8E-65 608.6 48.1 411 1369-1809 95-510 (545)
20 PLN00206 DEAD-box ATP-dependen 100.0 5.9E-60 1.3E-64 605.0 47.2 415 1368-1811 85-503 (518)
21 KOG0328|consensus 100.0 3.1E-61 6.8E-66 518.8 28.6 366 722-1121 21-387 (400)
22 KOG0335|consensus 100.0 5.6E-61 1.2E-65 569.1 30.9 383 716-1119 62-456 (482)
23 KOG0338|consensus 100.0 2.3E-61 5.1E-66 555.7 26.4 361 1402-1793 180-544 (691)
24 KOG0339|consensus 100.0 4.7E-60 1E-64 543.4 33.3 412 1369-1810 189-602 (731)
25 COG0513 SrmB Superfamily II DN 100.0 6.3E-59 1.4E-63 590.7 42.6 363 1403-1797 29-396 (513)
26 KOG0328|consensus 100.0 2.8E-59 6E-64 503.8 28.9 374 1398-1806 22-396 (400)
27 KOG0335|consensus 100.0 3.9E-59 8.4E-64 553.5 31.8 398 1389-1808 60-469 (482)
28 KOG0340|consensus 100.0 2.7E-59 5.9E-64 520.2 28.5 363 726-1122 5-376 (442)
29 KOG0342|consensus 100.0 3.3E-59 7.2E-64 541.1 28.9 362 727-1118 81-448 (543)
30 KOG0326|consensus 100.0 3.6E-60 7.7E-65 518.1 19.2 359 729-1122 86-444 (459)
31 KOG0345|consensus 100.0 2.9E-58 6.3E-63 528.5 34.4 361 728-1117 4-374 (567)
32 PRK04837 ATP-dependent RNA hel 100.0 1.6E-57 3.4E-62 572.9 42.3 371 727-1122 7-377 (423)
33 KOG0343|consensus 100.0 9.7E-58 2.1E-62 529.8 30.4 362 726-1118 67-434 (758)
34 PRK10590 ATP-dependent RNA hel 100.0 3.2E-56 6.9E-61 564.4 43.0 367 729-1123 2-368 (456)
35 PRK11634 ATP-dependent RNA hel 100.0 3.3E-56 7.2E-61 575.0 43.5 363 727-1123 5-368 (629)
36 PRK04537 ATP-dependent RNA hel 100.0 5.6E-56 1.2E-60 570.8 44.2 370 728-1122 9-379 (572)
37 PRK11776 ATP-dependent RNA hel 100.0 5.3E-56 1.1E-60 565.1 42.9 359 728-1121 4-363 (460)
38 KOG0326|consensus 100.0 7.4E-58 1.6E-62 499.9 20.0 368 1404-1807 86-453 (459)
39 KOG0340|consensus 100.0 1.4E-56 3.1E-61 498.5 29.3 360 1401-1794 5-373 (442)
40 PRK04837 ATP-dependent RNA hel 100.0 2.2E-55 4.8E-60 553.4 43.1 368 1403-1795 8-375 (423)
41 KOG0342|consensus 100.0 2.5E-56 5.5E-61 517.2 30.3 364 1402-1795 81-450 (543)
42 KOG0343|consensus 100.0 3.3E-56 7.2E-61 517.1 30.8 360 1402-1792 68-433 (758)
43 KOG0348|consensus 100.0 3.7E-56 7.9E-61 515.8 29.0 379 726-1119 134-566 (708)
44 KOG0334|consensus 100.0 4E-56 8.7E-61 558.9 31.4 407 1370-1806 331-743 (997)
45 KOG0347|consensus 100.0 2.5E-57 5.4E-62 526.8 18.6 381 723-1124 176-587 (731)
46 PRK11192 ATP-dependent RNA hel 100.0 2.3E-54 4.9E-59 546.9 44.6 363 729-1121 2-366 (434)
47 PRK10590 ATP-dependent RNA hel 100.0 2.8E-54 6E-59 546.7 44.2 364 1404-1795 2-365 (456)
48 KOG0345|consensus 100.0 8E-55 1.7E-59 500.2 34.8 354 1404-1786 5-368 (567)
49 PRK04537 ATP-dependent RNA hel 100.0 3.3E-54 7.2E-59 554.4 44.5 368 1403-1795 9-377 (572)
50 PRK11776 ATP-dependent RNA hel 100.0 5.2E-54 1.1E-58 546.8 43.8 358 1403-1795 4-362 (460)
51 PRK11634 ATP-dependent RNA hel 100.0 6.1E-54 1.3E-58 554.0 44.7 359 1402-1794 5-364 (629)
52 PRK01297 ATP-dependent RNA hel 100.0 3E-53 6.5E-58 541.1 44.7 372 725-1121 84-456 (475)
53 PRK11192 ATP-dependent RNA hel 100.0 8.7E-53 1.9E-57 532.4 46.7 362 1404-1795 2-365 (434)
54 KOG0346|consensus 100.0 2.6E-54 5.6E-59 491.0 27.5 364 728-1119 19-422 (569)
55 PRK01297 ATP-dependent RNA hel 100.0 3.8E-52 8.3E-57 530.9 46.7 386 1401-1811 85-472 (475)
56 KOG0347|consensus 100.0 1.1E-54 2.5E-59 504.7 18.0 379 1399-1798 177-586 (731)
57 KOG0348|consensus 100.0 7E-53 1.5E-57 488.6 29.8 377 1402-1793 135-565 (708)
58 PTZ00424 helicase 45; Provisio 100.0 2.8E-51 6E-56 515.0 41.7 363 726-1122 26-389 (401)
59 KOG0332|consensus 100.0 2.2E-52 4.8E-57 467.1 28.1 364 725-1125 87-462 (477)
60 KOG0346|consensus 100.0 8.1E-52 1.8E-56 470.6 28.0 367 1403-1797 19-425 (569)
61 PTZ00424 helicase 45; Provisio 100.0 2.7E-50 5.7E-55 506.2 42.9 370 1402-1806 27-397 (401)
62 KOG0344|consensus 100.0 3.6E-51 7.8E-56 486.1 27.1 385 709-1121 113-509 (593)
63 KOG0327|consensus 100.0 8.6E-51 1.9E-55 461.6 24.7 360 727-1122 25-385 (397)
64 KOG0332|consensus 100.0 4.8E-50 1E-54 448.5 28.5 360 1400-1796 87-458 (477)
65 KOG0337|consensus 100.0 6.5E-51 1.4E-55 461.7 20.7 365 727-1124 20-385 (529)
66 KOG0344|consensus 100.0 2.7E-49 5.8E-54 470.2 26.8 398 1384-1810 113-522 (593)
67 KOG0350|consensus 100.0 5.3E-49 1.1E-53 454.4 26.4 376 736-1119 145-552 (620)
68 TIGR03817 DECH_helic helicase/ 100.0 9.7E-48 2.1E-52 505.8 40.5 353 734-1122 20-403 (742)
69 KOG0327|consensus 100.0 1.4E-48 3.1E-53 443.6 25.3 367 1402-1805 25-392 (397)
70 KOG4284|consensus 100.0 8.2E-49 1.8E-53 460.8 24.1 353 722-1109 19-381 (980)
71 KOG0350|consensus 100.0 3E-48 6.6E-53 448.2 26.7 374 1413-1794 147-552 (620)
72 KOG0337|consensus 100.0 3E-48 6.5E-53 440.1 21.0 362 1402-1796 20-382 (529)
73 KOG4284|consensus 100.0 7.1E-48 1.5E-52 452.9 24.7 353 1397-1784 19-381 (980)
74 TIGR03817 DECH_helic helicase/ 100.0 1.8E-46 3.9E-51 493.8 41.0 350 1409-1794 20-400 (742)
75 PLN03137 ATP-dependent DNA hel 100.0 7.8E-46 1.7E-50 478.2 38.5 340 729-1114 436-794 (1195)
76 PLN03137 ATP-dependent DNA hel 100.0 2.1E-44 4.5E-49 465.1 39.9 342 1404-1791 436-796 (1195)
77 PRK02362 ski2-like helicase; P 100.0 1.6E-45 3.4E-50 491.4 29.6 462 729-1262 2-550 (737)
78 TIGR00614 recQ_fam ATP-depende 100.0 2.4E-44 5.3E-49 457.2 36.2 326 745-1116 6-342 (470)
79 PRK02362 ski2-like helicase; P 100.0 6.7E-45 1.5E-49 485.4 31.3 374 1404-1823 2-442 (737)
80 TIGR00614 recQ_fam ATP-depende 100.0 4.3E-43 9.4E-48 445.8 37.1 325 1420-1790 6-341 (470)
81 PRK00254 ski2-like helicase; P 100.0 8.7E-44 1.9E-48 473.5 32.1 452 729-1256 2-535 (720)
82 PRK11057 ATP-dependent DNA hel 100.0 8.1E-43 1.8E-47 454.0 37.6 334 735-1115 9-351 (607)
83 PRK00254 ski2-like helicase; P 100.0 8.6E-43 1.9E-47 464.1 33.3 372 1404-1823 2-432 (720)
84 PRK11057 ATP-dependent DNA hel 100.0 5.5E-42 1.2E-46 446.2 39.1 335 1409-1790 8-351 (607)
85 TIGR01389 recQ ATP-dependent D 100.0 6.6E-42 1.4E-46 447.5 36.2 328 741-1115 3-339 (591)
86 TIGR01389 recQ ATP-dependent D 100.0 1.8E-41 3.9E-46 443.4 37.5 326 1416-1788 3-337 (591)
87 PRK13767 ATP-dependent helicas 100.0 1.6E-41 3.4E-46 455.9 36.9 345 735-1107 18-398 (876)
88 PRK13767 ATP-dependent helicas 100.0 1.1E-40 2.5E-45 447.7 41.6 345 1410-1782 18-398 (876)
89 KOG0329|consensus 100.0 4.2E-43 9.2E-48 373.2 14.2 323 726-1117 40-366 (387)
90 PRK01172 ski2-like helicase; P 100.0 3.5E-41 7.7E-46 447.1 30.8 373 1404-1822 2-421 (674)
91 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-40 3.1E-45 426.5 34.4 318 746-1106 12-390 (844)
92 KOG0329|consensus 100.0 4.7E-42 1E-46 365.3 14.3 334 1403-1805 42-378 (387)
93 PRK01172 ski2-like helicase; P 100.0 1.7E-40 3.7E-45 440.6 31.2 367 729-1141 2-431 (674)
94 TIGR00580 mfd transcription-re 100.0 9E-39 1.9E-43 423.2 38.7 319 738-1108 439-771 (926)
95 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.1E-39 1.1E-43 412.2 35.1 318 1421-1781 12-390 (844)
96 KOG0952|consensus 100.0 1.2E-39 2.7E-44 404.3 26.1 371 1420-1820 105-528 (1230)
97 COG1201 Lhr Lhr-like helicases 100.0 6.6E-39 1.4E-43 408.8 33.6 341 735-1106 8-361 (814)
98 COG1201 Lhr Lhr-like helicases 100.0 1.8E-38 3.8E-43 404.9 33.6 342 1409-1782 7-362 (814)
99 COG0514 RecQ Superfamily II DN 100.0 1.4E-38 3.1E-43 392.6 31.0 334 741-1118 7-348 (590)
100 TIGR00580 mfd transcription-re 100.0 6.8E-38 1.5E-42 414.9 39.4 317 1414-1782 441-770 (926)
101 PRK10689 transcription-repair 100.0 8.1E-38 1.8E-42 422.5 38.5 318 737-1107 588-919 (1147)
102 COG0514 RecQ Superfamily II DN 100.0 4.8E-38 1E-42 387.9 32.4 334 1416-1793 7-348 (590)
103 PRK10917 ATP-dependent DNA hel 100.0 8.9E-37 1.9E-41 401.3 40.3 317 739-1107 251-589 (681)
104 PRK10689 transcription-repair 100.0 7.9E-37 1.7E-41 413.0 39.7 319 1411-1782 587-919 (1147)
105 PRK09751 putative ATP-dependen 100.0 2.9E-37 6.3E-42 416.9 34.3 312 770-1105 1-383 (1490)
106 COG1204 Superfamily II helicas 100.0 1.2E-37 2.6E-42 404.6 28.0 369 734-1141 15-456 (766)
107 PRK10917 ATP-dependent DNA hel 100.0 3.2E-36 6.9E-41 396.0 40.6 317 1413-1782 250-589 (681)
108 PRK09401 reverse gyrase; Revie 100.0 9.1E-37 2E-41 413.1 36.1 325 741-1093 71-430 (1176)
109 PRK09751 putative ATP-dependen 100.0 1.1E-36 2.5E-41 411.1 36.0 312 1445-1781 1-384 (1490)
110 TIGR00643 recG ATP-dependent D 100.0 3.4E-36 7.5E-41 393.6 39.0 318 738-1105 224-564 (630)
111 PHA02653 RNA helicase NPH-II; 100.0 1.8E-36 3.9E-41 388.9 33.1 310 753-1109 167-516 (675)
112 PRK14701 reverse gyrase; Provi 100.0 2.1E-36 4.5E-41 416.5 33.9 344 738-1108 67-457 (1638)
113 PRK09401 reverse gyrase; Revie 100.0 6.8E-36 1.5E-40 404.7 37.9 306 1421-1754 77-410 (1176)
114 TIGR00643 recG ATP-dependent D 100.0 1.6E-35 3.4E-40 387.4 39.8 320 1412-1781 223-565 (630)
115 COG1204 Superfamily II helicas 100.0 1.6E-36 3.4E-41 394.2 28.0 371 1409-1820 15-444 (766)
116 KOG0349|consensus 100.0 4.8E-37 1E-41 347.0 19.9 290 806-1114 287-622 (725)
117 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7E-36 1.5E-40 392.3 33.0 301 756-1108 8-337 (819)
118 TIGR01054 rgy reverse gyrase. 100.0 4.8E-35 1E-39 397.3 36.6 316 738-1079 66-409 (1171)
119 PRK11664 ATP-dependent RNA hel 100.0 2.5E-35 5.4E-40 388.3 31.1 300 757-1108 12-340 (812)
120 PRK14701 reverse gyrase; Provi 100.0 5.8E-35 1.2E-39 402.3 34.1 353 1414-1790 68-464 (1638)
121 PRK12898 secA preprotein trans 100.0 9.2E-35 2E-39 366.3 31.3 343 746-1109 100-588 (656)
122 COG1202 Superfamily II helicas 100.0 2.9E-35 6.2E-40 344.3 23.1 341 729-1108 195-554 (830)
123 TIGR01054 rgy reverse gyrase. 100.0 3.7E-34 8.1E-39 388.6 37.4 311 1416-1754 69-409 (1171)
124 COG1111 MPH1 ERCC4-like helica 100.0 3.7E-34 8.1E-39 336.3 30.3 320 1423-1782 13-481 (542)
125 PHA02653 RNA helicase NPH-II; 100.0 4.4E-34 9.6E-39 366.9 32.7 311 1427-1784 166-516 (675)
126 COG1202 Superfamily II helicas 100.0 8.3E-35 1.8E-39 340.4 23.3 340 1404-1782 195-553 (830)
127 COG1111 MPH1 ERCC4-like helica 100.0 1.7E-33 3.7E-38 330.8 32.5 322 747-1108 12-482 (542)
128 PRK12898 secA preprotein trans 100.0 1.2E-33 2.6E-38 356.3 32.0 343 1421-1784 100-588 (656)
129 KOG0923|consensus 100.0 6.4E-35 1.4E-39 346.1 19.0 331 756-1131 271-628 (902)
130 KOG0951|consensus 100.0 3.1E-34 6.7E-39 358.9 25.5 385 1408-1820 294-738 (1674)
131 KOG0349|consensus 100.0 7E-35 1.5E-39 329.5 17.4 292 1479-1789 285-622 (725)
132 PRK09200 preprotein translocas 100.0 3.9E-33 8.4E-38 358.8 33.6 343 746-1109 75-543 (790)
133 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.6E-33 1.2E-37 365.0 33.7 302 1431-1784 8-338 (819)
134 PHA02558 uvsW UvsW helicase; P 100.0 5.9E-33 1.3E-37 354.7 32.5 307 748-1105 112-450 (501)
135 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-33 5E-38 347.0 27.3 300 767-1108 1-337 (358)
136 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-32 3E-37 351.3 33.8 306 1423-1778 112-449 (501)
137 COG1205 Distinct helicase fami 100.0 1.2E-32 2.5E-37 363.2 33.5 352 737-1119 57-436 (851)
138 PRK09200 preprotein translocas 100.0 3.3E-32 7.1E-37 350.3 34.1 341 1421-1784 75-543 (790)
139 TIGR01587 cas3_core CRISPR-ass 100.0 1.2E-32 2.7E-37 340.5 27.8 299 1442-1783 1-337 (358)
140 KOG0924|consensus 100.0 2.1E-33 4.5E-38 332.8 18.8 319 744-1107 350-697 (1042)
141 PRK11664 ATP-dependent RNA hel 100.0 2.5E-32 5.4E-37 360.0 31.0 302 1431-1784 11-341 (812)
142 TIGR00963 secA preprotein tran 100.0 3.5E-32 7.6E-37 343.8 30.9 342 746-1109 53-519 (745)
143 KOG0352|consensus 100.0 9.1E-33 2E-37 313.1 22.8 333 738-1117 6-372 (641)
144 TIGR03714 secA2 accessory Sec 100.0 8.9E-32 1.9E-36 342.6 32.5 342 746-1109 67-539 (762)
145 KOG0351|consensus 100.0 3.2E-32 7E-37 354.8 27.6 331 740-1115 254-600 (941)
146 KOG0351|consensus 100.0 7.4E-32 1.6E-36 351.5 30.0 336 1412-1792 251-602 (941)
147 KOG0354|consensus 100.0 1.1E-31 2.3E-36 334.1 29.2 333 1410-1782 47-529 (746)
148 COG1205 Distinct helicase fami 100.0 1.9E-31 4.2E-36 351.7 33.2 342 1411-1782 56-422 (851)
149 TIGR03714 secA2 accessory Sec 100.0 4.2E-31 9.2E-36 336.4 34.2 340 1427-1784 70-539 (762)
150 KOG0354|consensus 100.0 1.6E-31 3.4E-36 332.6 28.6 324 746-1109 58-531 (746)
151 TIGR00963 secA preprotein tran 100.0 3.8E-31 8.2E-36 334.5 32.0 342 1421-1784 53-519 (745)
152 PRK11131 ATP-dependent RNA hel 100.0 1.5E-31 3.3E-36 355.4 29.5 296 757-1108 81-412 (1294)
153 KOG0352|consensus 100.0 8.1E-32 1.8E-36 305.4 22.0 332 1413-1791 6-371 (641)
154 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-30 2.5E-35 319.6 31.2 289 1429-1767 1-357 (357)
155 PRK13766 Hef nuclease; Provisi 100.0 4.3E-30 9.4E-35 347.8 38.2 321 1424-1783 14-480 (773)
156 PRK13766 Hef nuclease; Provisi 100.0 3.9E-30 8.5E-35 348.3 37.6 323 747-1108 12-480 (773)
157 TIGR03158 cas3_cyano CRISPR-as 100.0 1.5E-30 3.4E-35 318.5 29.9 289 754-1092 1-357 (357)
158 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.3E-30 7.1E-35 344.4 27.0 310 747-1108 61-405 (1283)
159 KOG0353|consensus 100.0 8.4E-30 1.8E-34 283.9 23.0 397 732-1178 75-530 (695)
160 KOG0353|consensus 100.0 2.1E-29 4.5E-34 280.8 24.1 335 1408-1784 76-469 (695)
161 TIGR00603 rad25 DNA repair hel 100.0 7.9E-29 1.7E-33 316.2 27.6 313 1424-1791 254-616 (732)
162 TIGR00603 rad25 DNA repair hel 100.0 8E-29 1.7E-33 316.1 26.1 310 749-1113 254-613 (732)
163 KOG0922|consensus 100.0 9.5E-29 2.1E-33 299.8 25.1 308 756-1108 57-391 (674)
164 PRK11131 ATP-dependent RNA hel 100.0 2.5E-28 5.3E-33 325.0 29.1 297 1432-1784 81-413 (1294)
165 PRK05580 primosome assembly pr 100.0 3.1E-27 6.8E-32 309.7 39.2 320 750-1116 144-558 (679)
166 KOG0947|consensus 100.0 2.8E-27 6E-32 291.1 26.5 330 1418-1797 291-737 (1248)
167 PRK05580 primosome assembly pr 99.9 6.8E-26 1.5E-30 297.1 35.8 311 1425-1783 144-550 (679)
168 cd00268 DEADc DEAD-box helicas 99.9 2.2E-27 4.8E-32 269.6 18.7 190 2-270 14-203 (203)
169 COG1200 RecG RecG-like helicas 99.9 9.2E-26 2E-30 277.4 32.8 330 1413-1795 251-604 (677)
170 COG1200 RecG RecG-like helicas 99.9 1.1E-25 2.5E-30 276.5 32.5 318 739-1109 252-593 (677)
171 cd00268 DEADc DEAD-box helicas 99.9 4.4E-26 9.6E-31 259.0 24.8 202 730-963 1-202 (203)
172 KOG0948|consensus 99.9 4.2E-27 9.2E-32 282.9 16.9 312 1420-1782 125-539 (1041)
173 COG1643 HrpA HrpA-like helicas 99.9 3.1E-26 6.6E-31 295.7 24.7 306 758-1108 58-388 (845)
174 PRK13104 secA preprotein trans 99.9 2.6E-25 5.6E-30 285.0 32.6 342 746-1109 79-589 (896)
175 KOG0947|consensus 99.9 5.3E-26 1.2E-30 279.9 25.1 323 745-1118 293-733 (1248)
176 PRK12899 secA preprotein trans 99.9 2.8E-25 6E-30 283.3 32.3 149 731-893 65-229 (970)
177 COG4581 Superfamily II RNA hel 99.9 6.1E-26 1.3E-30 293.4 25.7 321 1416-1782 111-537 (1041)
178 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.8E-26 1.9E-30 302.2 28.0 299 1433-1784 75-406 (1283)
179 TIGR00595 priA primosomal prot 99.9 2.5E-25 5.4E-30 282.0 29.8 300 769-1115 1-389 (505)
180 PRK12904 preprotein translocas 99.9 3.9E-25 8.5E-30 283.7 30.0 342 746-1109 78-575 (830)
181 PRK09694 helicase Cas3; Provis 99.9 5.6E-25 1.2E-29 289.1 32.1 311 1423-1771 284-664 (878)
182 PRK04914 ATP-dependent helicas 99.9 1.3E-24 2.7E-29 287.3 35.4 133 1661-1793 479-614 (956)
183 PRK13104 secA preprotein trans 99.9 1.2E-24 2.7E-29 278.8 33.3 342 1421-1784 79-589 (896)
184 COG1061 SSL2 DNA or RNA helica 99.9 2.4E-25 5.2E-30 279.1 25.9 291 1424-1768 35-375 (442)
185 PRK09694 helicase Cas3; Provis 99.9 5.1E-25 1.1E-29 289.5 29.7 311 748-1096 284-664 (878)
186 PRK12906 secA preprotein trans 99.9 4.7E-25 1E-29 281.9 27.4 341 746-1109 77-555 (796)
187 PRK04914 ATP-dependent helicas 99.9 1.9E-24 4.1E-29 285.7 33.1 136 986-1121 479-617 (956)
188 COG1061 SSL2 DNA or RNA helica 99.9 6E-25 1.3E-29 275.6 25.8 292 748-1094 34-376 (442)
189 COG4581 Superfamily II RNA hel 99.9 7.1E-25 1.5E-29 283.6 26.5 319 742-1108 112-538 (1041)
190 PRK12904 preprotein translocas 99.9 3.2E-24 7E-29 275.3 32.0 342 1421-1784 78-575 (830)
191 PRK12906 secA preprotein trans 99.9 3.7E-24 7.9E-29 273.8 30.4 342 1421-1784 77-555 (796)
192 TIGR00595 priA primosomal prot 99.9 5.8E-24 1.2E-28 269.6 31.3 291 1444-1782 1-381 (505)
193 PRK12899 secA preprotein trans 99.9 8.9E-24 1.9E-28 269.7 32.9 148 1407-1568 66-229 (970)
194 KOG0950|consensus 99.9 1.1E-24 2.5E-29 271.9 23.1 351 1410-1797 207-626 (1008)
195 KOG0948|consensus 99.9 4.3E-25 9.3E-30 265.8 17.2 307 750-1107 129-539 (1041)
196 KOG0950|consensus 99.9 1.8E-24 3.9E-29 270.1 22.4 339 734-1115 207-619 (1008)
197 COG1197 Mfd Transcription-repa 99.9 7.7E-23 1.7E-27 264.4 32.9 319 738-1108 582-914 (1139)
198 COG1197 Mfd Transcription-repa 99.9 1.1E-22 2.3E-27 263.1 33.6 316 1416-1783 586-914 (1139)
199 PRK11448 hsdR type I restricti 99.9 7.4E-23 1.6E-27 276.8 31.3 304 1425-1769 413-800 (1123)
200 PF00270 DEAD: DEAD/DEAH box h 99.9 4.7E-24 1E-28 234.8 15.7 147 11-167 1-148 (169)
201 PRK11448 hsdR type I restricti 99.9 1.4E-22 3.1E-27 274.0 30.2 303 749-1096 412-802 (1123)
202 PRK13107 preprotein translocas 99.9 1.3E-22 2.9E-27 259.1 27.8 342 746-1109 79-593 (908)
203 PRK13107 preprotein translocas 99.9 5.9E-22 1.3E-26 253.3 28.2 342 1421-1784 79-593 (908)
204 KOG0925|consensus 99.9 1.1E-22 2.4E-27 235.2 18.0 332 727-1107 24-387 (699)
205 KOG0926|consensus 99.9 1.5E-22 3.3E-27 245.1 17.1 322 756-1107 262-704 (1172)
206 PF00270 DEAD: DEAD/DEAH box h 99.9 5.7E-22 1.2E-26 218.2 20.0 167 752-951 1-168 (169)
207 COG4098 comFA Superfamily II D 99.9 9.7E-21 2.1E-25 212.1 29.4 304 1425-1785 97-419 (441)
208 COG4098 comFA Superfamily II D 99.9 6.2E-20 1.3E-24 205.8 28.5 310 749-1115 96-424 (441)
209 KOG0920|consensus 99.9 9.3E-21 2E-25 243.4 24.8 316 750-1108 173-545 (924)
210 PRK12900 secA preprotein trans 99.8 1.7E-19 3.6E-24 231.4 25.0 127 981-1109 577-713 (1025)
211 TIGR00631 uvrb excinuclease AB 99.8 6.6E-19 1.4E-23 228.4 28.2 132 1660-1792 425-563 (655)
212 TIGR00631 uvrb excinuclease AB 99.8 2.8E-18 6.1E-23 222.5 33.7 133 985-1118 425-564 (655)
213 PRK12900 secA preprotein trans 99.8 4.2E-19 9.1E-24 227.7 25.2 127 1656-1784 577-713 (1025)
214 COG1110 Reverse gyrase [DNA re 99.8 1.4E-18 3E-23 218.4 28.8 303 1421-1753 79-416 (1187)
215 COG1203 CRISPR-associated heli 99.8 4.8E-19 1E-23 235.0 25.5 322 1425-1782 195-550 (733)
216 COG1203 CRISPR-associated heli 99.8 1.5E-18 3.3E-23 230.2 25.6 324 750-1109 195-552 (733)
217 KOG0949|consensus 99.8 1.8E-18 3.9E-23 214.3 23.5 163 1422-1624 509-675 (1330)
218 PLN03142 Probable chromatin-re 99.8 1.1E-17 2.3E-22 222.5 32.0 315 1425-1782 169-599 (1033)
219 COG0556 UvrB Helicase subunit 99.8 1.6E-18 3.6E-23 204.5 20.4 166 1610-1783 386-558 (663)
220 COG1110 Reverse gyrase [DNA re 99.8 7.1E-18 1.5E-22 212.1 26.7 306 741-1078 73-416 (1187)
221 COG1198 PriA Primosomal protei 99.8 1.9E-17 4.1E-22 212.0 28.0 326 748-1117 196-613 (730)
222 TIGR01407 dinG_rel DnaQ family 99.8 2.9E-17 6.3E-22 222.7 30.0 354 735-1106 231-813 (850)
223 COG1643 HrpA HrpA-like helicas 99.8 2.5E-17 5.4E-22 213.7 25.6 303 1432-1784 57-389 (845)
224 PRK05298 excinuclease ABC subu 99.8 1.5E-16 3.2E-21 208.6 32.3 130 987-1117 431-567 (652)
225 KOG0949|consensus 99.8 1.6E-17 3.5E-22 206.0 21.7 160 750-948 511-674 (1330)
226 TIGR01407 dinG_rel DnaQ family 99.8 1E-16 2.2E-21 217.4 31.4 358 1410-1782 231-814 (850)
227 PRK05298 excinuclease ABC subu 99.8 4E-17 8.6E-22 213.9 26.3 122 1661-1783 430-558 (652)
228 PLN03142 Probable chromatin-re 99.8 1.3E-16 2.8E-21 212.3 30.3 340 750-1107 169-599 (1033)
229 smart00487 DEXDc DEAD-like hel 99.8 2E-17 4.4E-22 186.0 18.7 189 3-273 2-192 (201)
230 PRK12326 preprotein translocas 99.7 1.9E-16 4.2E-21 198.6 28.1 340 746-1108 75-548 (764)
231 COG0556 UvrB Helicase subunit 99.7 9.8E-17 2.1E-21 189.7 22.8 169 935-1111 386-561 (663)
232 PRK12326 preprotein translocas 99.7 7.2E-16 1.6E-20 193.5 31.0 342 1421-1784 75-549 (764)
233 KOG0922|consensus 99.7 1.6E-16 3.5E-21 194.2 24.4 304 1431-1785 57-393 (674)
234 COG4096 HsdR Type I site-speci 99.7 1.1E-16 2.3E-21 199.7 22.2 294 1424-1769 164-525 (875)
235 TIGR00348 hsdR type I site-spe 99.7 4.7E-16 1E-20 204.7 28.7 308 1425-1780 238-649 (667)
236 PRK13103 secA preprotein trans 99.7 4.3E-16 9.4E-21 200.1 26.0 342 746-1109 79-593 (913)
237 KOG4150|consensus 99.7 9.3E-17 2E-21 188.3 17.5 347 1415-1790 276-650 (1034)
238 COG4096 HsdR Type I site-speci 99.7 1.5E-16 3.2E-21 198.4 20.0 296 747-1094 162-525 (875)
239 smart00487 DEXDc DEAD-like hel 99.7 3.9E-16 8.5E-21 175.5 21.5 188 745-967 3-192 (201)
240 PRK13103 secA preprotein trans 99.7 1.5E-15 3.2E-20 195.3 26.9 342 1421-1784 79-593 (913)
241 COG1198 PriA Primosomal protei 99.7 2.3E-15 5.1E-20 192.9 27.7 338 1424-1805 197-635 (730)
242 TIGR00348 hsdR type I site-spe 99.7 1.4E-15 2.9E-20 200.3 26.1 296 751-1094 239-634 (667)
243 PRK12903 secA preprotein trans 99.7 1.6E-14 3.4E-19 183.6 28.1 341 746-1109 75-541 (925)
244 KOG0924|consensus 99.7 2.5E-15 5.5E-20 180.3 18.9 306 1426-1782 357-697 (1042)
245 PRK12903 secA preprotein trans 99.6 4.1E-14 9E-19 179.9 28.9 340 1421-1784 75-541 (925)
246 KOG0923|consensus 99.6 8.2E-15 1.8E-19 176.3 21.3 307 1425-1782 265-606 (902)
247 KOG4150|consensus 99.6 2.8E-15 6E-20 176.1 16.4 346 739-1113 275-648 (1034)
248 PRK07246 bifunctional ATP-depe 99.6 1.1E-13 2.5E-18 185.0 33.1 335 1421-1782 242-783 (820)
249 KOG0920|consensus 99.6 2.6E-14 5.7E-19 184.6 25.6 312 1426-1783 174-545 (924)
250 PRK07246 bifunctional ATP-depe 99.6 7.7E-14 1.7E-18 186.7 30.4 334 746-1106 242-782 (820)
251 cd00079 HELICc Helicase superf 99.6 6.3E-15 1.4E-19 154.7 15.3 119 1660-1778 11-131 (131)
252 KOG1123|consensus 99.6 4.1E-15 8.9E-20 173.3 14.7 313 748-1116 300-662 (776)
253 KOG1123|consensus 99.6 6.7E-15 1.5E-19 171.5 15.9 314 1424-1792 301-663 (776)
254 CHL00122 secA preprotein trans 99.6 1.2E-13 2.5E-18 177.4 26.3 299 746-1066 73-490 (870)
255 cd00079 HELICc Helicase superf 99.6 1.4E-14 3.1E-19 151.9 14.8 119 985-1103 11-131 (131)
256 PF00271 Helicase_C: Helicase 99.6 7.7E-15 1.7E-19 139.5 9.2 78 1018-1095 1-78 (78)
257 KOG0926|consensus 99.6 1E-13 2.2E-18 169.6 20.9 314 1433-1782 264-704 (1172)
258 PF00271 Helicase_C: Helicase 99.6 9.7E-15 2.1E-19 138.8 9.3 78 1693-1770 1-78 (78)
259 CHL00122 secA preprotein trans 99.5 6.7E-13 1.4E-17 170.5 26.3 300 1421-1742 73-491 (870)
260 KOG0385|consensus 99.5 1.2E-12 2.6E-17 160.6 26.5 339 1425-1783 167-600 (971)
261 KOG0953|consensus 99.5 1.3E-13 2.9E-18 163.8 17.1 277 768-1120 194-486 (700)
262 TIGR03117 cas_csf4 CRISPR-asso 99.5 3.6E-12 7.8E-17 163.1 31.5 88 989-1079 460-561 (636)
263 TIGR03117 cas_csf4 CRISPR-asso 99.5 1.5E-11 3.2E-16 157.5 34.9 112 1666-1781 462-616 (636)
264 PRK12902 secA preprotein trans 99.5 2.5E-12 5.4E-17 164.6 27.1 299 746-1067 82-506 (939)
265 KOG0925|consensus 99.5 2.5E-12 5.4E-17 150.3 21.3 327 1402-1782 24-387 (699)
266 COG4889 Predicted helicase [Ge 99.5 7.6E-14 1.6E-18 171.2 9.2 313 1422-1769 158-572 (1518)
267 PRK12902 secA preprotein trans 99.5 1E-11 2.2E-16 159.2 28.5 300 1421-1742 82-506 (939)
268 KOG0385|consensus 99.5 8E-12 1.7E-16 153.5 25.9 339 750-1107 167-599 (971)
269 PRK08074 bifunctional ATP-depe 99.5 1.8E-11 3.9E-16 167.2 32.5 108 1674-1782 751-893 (928)
270 cd00046 DEXDc DEAD-like helica 99.4 2.2E-12 4.7E-17 136.4 16.5 121 766-897 1-121 (144)
271 PRK08074 bifunctional ATP-depe 99.4 1.6E-11 3.4E-16 167.8 27.7 109 998-1106 750-892 (928)
272 KOG0953|consensus 99.4 2.7E-12 5.8E-17 152.9 17.4 267 1443-1781 194-476 (700)
273 cd00046 DEXDc DEAD-like helica 99.4 4.5E-12 9.7E-17 134.0 16.9 121 1441-1572 1-121 (144)
274 smart00490 HELICc helicase sup 99.4 2.4E-12 5.2E-17 123.0 9.4 81 1690-1770 2-82 (82)
275 TIGR02562 cas3_yersinia CRISPR 99.3 3.3E-11 7.1E-16 156.6 22.3 318 740-1096 398-881 (1110)
276 smart00490 HELICc helicase sup 99.3 2.7E-12 5.9E-17 122.7 9.3 81 1015-1095 2-82 (82)
277 COG4889 Predicted helicase [Ge 99.3 4.8E-12 1E-16 155.7 12.1 330 741-1105 152-586 (1518)
278 PRK12901 secA preprotein trans 99.3 9E-11 2E-15 151.8 23.7 126 981-1108 607-742 (1112)
279 PF04851 ResIII: Type III rest 99.3 1E-11 2.2E-16 138.5 12.4 152 1425-1621 3-183 (184)
280 PF04851 ResIII: Type III rest 99.3 9.7E-12 2.1E-16 138.6 12.1 129 750-893 3-160 (184)
281 PRK14873 primosome assembly pr 99.3 2.8E-10 6.2E-15 148.0 26.1 99 771-890 166-268 (665)
282 KOG0384|consensus 99.3 1.5E-10 3.3E-15 149.2 22.0 118 1674-1791 698-822 (1373)
283 TIGR02562 cas3_yersinia CRISPR 99.3 1.9E-10 4.2E-15 149.6 22.8 91 1678-1771 759-881 (1110)
284 KOG0390|consensus 99.3 9.9E-10 2.2E-14 140.7 28.8 349 1425-1782 238-707 (776)
285 KOG0387|consensus 99.3 3.1E-10 6.6E-15 140.9 22.4 335 1425-1782 205-658 (923)
286 PRK12901 secA preprotein trans 99.2 5.3E-10 1.2E-14 144.8 23.5 127 1656-1784 607-743 (1112)
287 KOG0390|consensus 99.2 8.3E-10 1.8E-14 141.4 24.9 319 750-1107 238-707 (776)
288 KOG0387|consensus 99.2 6.5E-10 1.4E-14 138.0 22.8 339 749-1108 204-659 (923)
289 COG1199 DinG Rad3-related DNA 99.2 2E-09 4.3E-14 144.2 29.6 110 1665-1778 470-614 (654)
290 PRK11747 dinG ATP-dependent DN 99.2 5.6E-09 1.2E-13 138.7 32.3 104 1674-1782 533-674 (697)
291 PRK11747 dinG ATP-dependent DN 99.2 3.3E-09 7.2E-14 140.8 30.1 83 991-1079 527-616 (697)
292 TIGR00604 rad3 DNA repair heli 99.2 9.5E-09 2.1E-13 137.7 32.5 74 1421-1503 6-83 (705)
293 COG1199 DinG Rad3-related DNA 99.2 3.6E-09 7.9E-14 141.7 27.3 105 989-1097 469-607 (654)
294 KOG0384|consensus 99.1 3.2E-09 7E-14 137.3 24.3 109 999-1107 698-811 (1373)
295 PF06862 DUF1253: Protein of u 99.1 1.5E-08 3.4E-13 124.0 29.0 308 804-1115 36-423 (442)
296 TIGR00604 rad3 DNA repair heli 99.1 1.3E-08 2.9E-13 136.4 30.4 74 746-828 6-83 (705)
297 KOG1000|consensus 99.1 9.4E-09 2E-13 121.4 24.2 326 748-1119 196-617 (689)
298 KOG0392|consensus 99.1 6.5E-09 1.4E-13 133.7 23.6 108 1675-1782 1340-1454(1549)
299 KOG1000|consensus 99.1 2.5E-08 5.4E-13 117.9 25.4 323 1425-1794 198-617 (689)
300 PRK14873 primosome assembly pr 99.1 1.6E-08 3.4E-13 131.9 26.6 95 1449-1564 169-267 (665)
301 PF06862 DUF1253: Protein of u 99.1 6.3E-08 1.4E-12 118.8 30.0 259 1530-1790 131-423 (442)
302 KOG0389|consensus 99.0 1.8E-08 3.8E-13 125.4 20.5 346 1425-1783 399-889 (941)
303 KOG0921|consensus 99.0 3.5E-09 7.5E-14 132.0 13.0 337 754-1119 382-783 (1282)
304 KOG0389|consensus 98.9 3.4E-08 7.3E-13 123.0 20.5 124 985-1108 760-889 (941)
305 PF02399 Herpes_ori_bp: Origin 98.9 6.1E-08 1.3E-12 124.1 22.8 292 1443-1782 52-388 (824)
306 PF02399 Herpes_ori_bp: Origin 98.9 1.4E-07 2.9E-12 121.0 23.5 292 768-1107 52-388 (824)
307 KOG2340|consensus 98.9 3.6E-08 7.8E-13 117.6 15.8 366 747-1116 213-677 (698)
308 KOG0392|consensus 98.8 1.3E-07 2.9E-12 122.1 20.8 124 984-1107 1308-1454(1549)
309 KOG1002|consensus 98.8 4.1E-07 8.9E-12 107.4 22.4 155 986-1142 620-784 (791)
310 smart00488 DEXDc2 DEAD-like he 98.8 2.5E-08 5.4E-13 119.0 11.6 77 5-88 5-85 (289)
311 smart00489 DEXDc3 DEAD-like he 98.8 2.5E-08 5.4E-13 119.0 11.6 77 5-88 5-85 (289)
312 smart00488 DEXDc2 DEAD-like he 98.8 7.6E-08 1.6E-12 114.9 14.5 75 747-828 6-84 (289)
313 smart00489 DEXDc3 DEAD-like he 98.8 7.6E-08 1.6E-12 114.9 14.5 75 747-828 6-84 (289)
314 PF07652 Flavi_DEAD: Flaviviru 98.7 1.6E-08 3.4E-13 104.4 6.8 138 765-950 4-141 (148)
315 KOG4439|consensus 98.7 5.2E-07 1.1E-11 111.2 19.7 102 1677-1778 748-852 (901)
316 KOG1002|consensus 98.7 9E-07 1.9E-11 104.6 20.7 123 1661-1783 620-750 (791)
317 KOG2340|consensus 98.7 4.8E-07 1E-11 108.3 17.1 365 1424-1790 215-676 (698)
318 KOG4439|consensus 98.7 3.6E-07 7.9E-12 112.5 16.4 88 1014-1101 760-850 (901)
319 COG0653 SecA Preprotein transl 98.6 9.6E-07 2.1E-11 114.2 18.9 338 750-1108 80-546 (822)
320 COG0653 SecA Preprotein transl 98.6 8.6E-07 1.9E-11 114.6 17.9 341 1421-1783 77-546 (822)
321 PF00176 SNF2_N: SNF2 family N 98.6 4.2E-07 9E-12 109.9 14.5 131 1429-1567 1-147 (299)
322 PF00176 SNF2_N: SNF2 family N 98.5 1E-06 2.3E-11 106.4 15.7 119 766-892 26-147 (299)
323 KOG0386|consensus 98.5 4.9E-07 1.1E-11 115.5 13.0 334 749-1104 393-833 (1157)
324 KOG0386|consensus 98.5 1E-06 2.2E-11 112.7 14.8 120 1661-1780 710-834 (1157)
325 PF07652 Flavi_DEAD: Flaviviru 98.5 7.7E-07 1.7E-11 92.1 11.1 104 1440-1566 4-107 (148)
326 PF07517 SecA_DEAD: SecA DEAD- 98.4 2.4E-06 5.3E-11 99.3 15.0 130 746-892 74-210 (266)
327 PF07517 SecA_DEAD: SecA DEAD- 98.4 3.3E-06 7.1E-11 98.2 15.7 130 1421-1567 74-210 (266)
328 KOG0388|consensus 98.4 0.00013 2.8E-09 90.2 28.8 123 985-1107 1027-1154(1185)
329 COG0610 Type I site-specific r 98.4 2.1E-05 4.6E-10 107.6 24.6 308 1441-1795 274-664 (962)
330 COG0553 HepA Superfamily II DN 98.4 2.8E-05 6E-10 108.6 25.7 123 1661-1783 692-823 (866)
331 COG0553 HepA Superfamily II DN 98.3 1.1E-05 2.3E-10 112.8 21.0 123 986-1108 692-823 (866)
332 KOG0388|consensus 98.2 3.6E-05 7.9E-10 94.7 19.1 122 1661-1782 1028-1154(1185)
333 COG0610 Type I site-specific r 98.2 8.3E-05 1.8E-09 101.9 23.8 112 766-891 274-388 (962)
334 KOG0921|consensus 98.1 1.5E-05 3.3E-10 100.6 11.5 326 1433-1781 386-773 (1282)
335 COG3587 Restriction endonuclea 98.1 7.8E-05 1.7E-09 94.9 17.0 74 1724-1797 482-568 (985)
336 PRK15483 type III restriction- 97.9 8.7E-05 1.9E-09 98.7 15.5 72 1725-1796 501-582 (986)
337 TIGR00596 rad1 DNA repair prot 97.9 0.00011 2.4E-09 97.9 16.3 54 853-906 5-58 (814)
338 TIGR00596 rad1 DNA repair prot 97.9 0.00018 3.8E-09 96.0 18.0 52 1529-1580 6-57 (814)
339 PRK15483 type III restriction- 97.9 0.00012 2.5E-09 97.5 15.4 117 767-893 61-215 (986)
340 COG3587 Restriction endonuclea 97.9 0.00027 5.8E-09 90.3 17.0 74 1049-1122 482-568 (985)
341 PF14617 CMS1: U3-containing 9 97.7 6E-05 1.3E-09 86.7 8.0 112 35-147 96-210 (252)
342 PF13086 AAA_11: AAA domain; P 97.7 0.00011 2.4E-09 85.2 8.9 74 750-827 1-75 (236)
343 PF13086 AAA_11: AAA domain; P 97.6 0.00018 4E-09 83.4 9.2 74 1425-1502 1-75 (236)
344 PF13604 AAA_30: AAA domain; P 97.5 0.00053 1.2E-08 77.5 11.1 63 750-824 1-65 (196)
345 PF13307 Helicase_C_2: Helicas 97.5 0.00027 5.9E-09 77.7 7.8 111 1668-1781 3-149 (167)
346 PF13604 AAA_30: AAA domain; P 97.3 0.0011 2.4E-08 74.9 10.9 112 1425-1583 1-118 (196)
347 KOG1802|consensus 97.3 0.001 2.2E-08 82.5 9.9 85 1417-1516 402-486 (935)
348 KOG1802|consensus 97.2 0.0013 2.9E-08 81.5 10.8 84 742-840 402-485 (935)
349 KOG1803|consensus 97.2 0.00049 1.1E-08 85.4 7.0 66 749-826 184-250 (649)
350 TIGR00376 DNA helicase, putati 97.2 0.0018 3.8E-08 85.8 12.7 68 749-828 156-224 (637)
351 KOG4676|consensus 97.2 0.00026 5.6E-09 82.2 3.7 14 243-256 130-143 (479)
352 PF02562 PhoH: PhoH-like prote 97.1 0.0026 5.7E-08 71.5 10.3 60 748-817 2-61 (205)
353 PF13307 Helicase_C_2: Helicas 97.1 0.00094 2E-08 73.5 6.8 109 993-1104 3-147 (167)
354 PF13872 AAA_34: P-loop contai 97.1 0.0058 1.3E-07 71.6 13.5 140 1408-1569 26-187 (303)
355 TIGR00376 DNA helicase, putati 97.1 0.0033 7.3E-08 83.2 13.0 68 1424-1503 156-224 (637)
356 PF09848 DUF2075: Uncharacteri 97.0 0.0021 4.5E-08 79.7 9.6 95 767-893 3-97 (352)
357 PF12340 DUF3638: Protein of u 96.9 0.011 2.4E-07 67.0 13.1 152 728-893 3-186 (229)
358 PF02562 PhoH: PhoH-like prote 96.8 0.0036 7.9E-08 70.4 8.8 59 1424-1492 3-61 (205)
359 COG3421 Uncharacterized protei 96.8 0.0049 1.1E-07 76.1 10.3 112 771-893 3-126 (812)
360 PF13245 AAA_19: Part of AAA d 96.8 0.0041 9E-08 58.6 7.6 60 758-825 2-62 (76)
361 PF09848 DUF2075: Uncharacteri 96.8 0.0033 7.2E-08 77.9 9.0 94 1443-1568 4-97 (352)
362 KOG1803|consensus 96.8 0.0023 4.9E-08 79.8 7.2 66 1424-1501 184-250 (649)
363 PF12340 DUF3638: Protein of u 96.8 0.014 3.1E-07 66.2 12.8 152 1403-1568 3-186 (229)
364 PRK10536 hypothetical protein; 96.6 0.0053 1.1E-07 70.9 8.2 61 746-816 55-115 (262)
365 TIGR01448 recD_rel helicase, p 96.6 0.017 3.8E-07 77.7 14.3 67 746-823 320-386 (720)
366 TIGR01642 U2AF_lg U2 snRNP aux 96.6 0.002 4.2E-08 84.4 5.3 7 822-828 313-319 (509)
367 PRK10875 recD exonuclease V su 96.6 0.019 4.2E-07 75.3 13.8 131 752-908 154-290 (615)
368 KOG2888|consensus 96.5 0.0015 3.4E-08 74.1 2.6 18 72-89 81-98 (453)
369 PF13245 AAA_19: Part of AAA d 96.4 0.011 2.3E-07 55.9 7.7 60 1433-1500 2-62 (76)
370 TIGR01447 recD exodeoxyribonuc 96.4 0.027 5.9E-07 73.8 14.1 131 753-908 148-284 (586)
371 KOG4676|consensus 96.4 0.0014 2.9E-08 76.5 1.8 12 213-224 128-139 (479)
372 KOG0391|consensus 96.4 0.017 3.7E-07 75.7 11.5 119 985-1107 1259-1387(1958)
373 COG3421 Uncharacterized protei 96.4 0.051 1.1E-06 67.6 15.0 109 1446-1568 3-126 (812)
374 PRK10536 hypothetical protein; 96.3 0.035 7.5E-07 64.3 12.5 61 1421-1491 55-115 (262)
375 KOG1805|consensus 96.3 0.014 3E-07 76.2 9.8 140 729-892 652-809 (1100)
376 KOG0391|consensus 96.3 0.027 5.9E-07 74.0 12.1 122 1661-1782 1260-1387(1958)
377 PF13872 AAA_34: P-loop contai 96.2 0.041 8.9E-07 64.8 12.4 141 732-894 25-187 (303)
378 KOG1805|consensus 96.2 0.019 4.1E-07 75.0 10.2 142 1402-1567 650-809 (1100)
379 TIGR01448 recD_rel helicase, p 96.1 0.043 9.3E-07 74.0 14.0 67 1420-1497 319-385 (720)
380 KOG0151|consensus 96.1 0.0035 7.6E-08 78.1 3.4 72 4-87 250-330 (877)
381 PRK13889 conjugal transfer rel 96.1 0.043 9.3E-07 75.2 13.8 64 745-821 342-406 (988)
382 KOG1132|consensus 96.1 0.033 7.1E-07 72.4 11.7 82 750-831 21-136 (945)
383 KOG1132|consensus 96.0 0.036 7.8E-07 72.1 11.7 82 1425-1506 21-136 (945)
384 PRK10875 recD exonuclease V su 96.0 0.056 1.2E-06 71.0 13.5 131 1427-1583 154-290 (615)
385 PRK12723 flagellar biosynthesi 95.9 0.13 2.8E-06 63.9 15.4 92 765-892 174-267 (388)
386 TIGR01447 recD exodeoxyribonuc 95.8 0.082 1.8E-06 69.4 14.3 131 1428-1583 148-284 (586)
387 PRK06526 transposase; Provisio 95.8 0.056 1.2E-06 63.5 11.6 22 763-784 96-117 (254)
388 KOG1015|consensus 95.8 0.024 5.3E-07 73.0 8.6 118 1661-1778 1126-1271(1567)
389 COG2805 PilT Tfp pilus assembl 95.8 0.013 2.7E-07 67.8 5.4 63 710-792 88-151 (353)
390 TIGR02768 TraA_Ti Ti-type conj 95.8 0.052 1.1E-06 73.5 12.3 62 749-822 351-413 (744)
391 PF13401 AAA_22: AAA domain; P 95.7 0.073 1.6E-06 55.7 10.8 20 765-784 4-23 (131)
392 PRK13889 conjugal transfer rel 95.7 0.058 1.3E-06 74.0 12.1 63 1421-1496 343-406 (988)
393 PF00580 UvrD-helicase: UvrD/R 95.6 0.024 5.2E-07 69.0 7.9 123 751-889 1-125 (315)
394 KOG2888|consensus 95.5 0.011 2.4E-07 67.4 3.6 23 249-271 167-190 (453)
395 PF14617 CMS1: U3-containing 9 95.4 0.027 5.8E-07 65.2 6.7 87 802-889 123-211 (252)
396 TIGR02768 TraA_Ti Ti-type conj 95.4 0.098 2.1E-06 70.9 12.8 60 1425-1496 352-412 (744)
397 KOG0670|consensus 95.3 0.034 7.3E-07 68.1 7.3 10 768-777 434-443 (752)
398 PF13401 AAA_22: AAA domain; P 95.3 0.091 2E-06 55.0 9.7 21 1440-1460 4-24 (131)
399 PRK13826 Dtr system oriT relax 95.2 0.22 4.8E-06 68.9 15.3 72 737-821 369-441 (1102)
400 smart00492 HELICc3 helicase su 95.0 0.15 3.2E-06 54.4 10.4 51 1703-1753 25-78 (141)
401 KOG1015|consensus 95.0 0.061 1.3E-06 69.6 8.5 117 986-1102 1126-1270(1567)
402 PF00580 UvrD-helicase: UvrD/R 95.0 0.048 1E-06 66.3 7.7 123 1426-1564 1-125 (315)
403 TIGR01622 SF-CC1 splicing fact 95.0 0.015 3.3E-07 75.0 3.4 13 808-820 231-243 (457)
404 PRK11889 flhF flagellar biosyn 94.8 0.51 1.1E-05 58.0 15.3 90 766-892 242-333 (436)
405 PRK13826 Dtr system oriT relax 94.8 0.29 6.2E-06 67.8 14.8 74 1410-1496 367-441 (1102)
406 smart00491 HELICc2 helicase su 94.8 0.14 3E-06 54.7 9.3 92 1689-1780 5-137 (142)
407 PRK08181 transposase; Validate 94.7 0.4 8.6E-06 56.8 13.8 20 764-783 105-124 (269)
408 PF05970 PIF1: PIF1-like helic 94.6 0.046 1E-06 68.0 6.1 60 1425-1496 1-66 (364)
409 PRK14974 cell division protein 94.6 0.15 3.3E-06 62.2 10.3 132 766-957 141-276 (336)
410 KOG0147|consensus 94.4 0.084 1.8E-06 65.2 7.4 19 1003-1021 493-511 (549)
411 COG1875 NYN ribonuclease and A 94.4 0.24 5.2E-06 59.0 10.8 133 1420-1583 223-376 (436)
412 smart00382 AAA ATPases associa 94.3 0.072 1.6E-06 55.7 6.0 20 765-784 2-21 (148)
413 KOG4368|consensus 94.3 0.027 5.8E-07 68.9 2.9 8 195-202 338-345 (757)
414 TIGR02760 TraI_TIGR conjugativ 94.3 1.4 3.1E-05 65.8 20.7 238 750-1051 429-687 (1960)
415 KOG0151|consensus 94.2 0.025 5.4E-07 70.9 2.4 16 155-170 513-528 (877)
416 KOG0835|consensus 94.2 0.096 2.1E-06 60.8 6.8 55 271-327 210-268 (367)
417 smart00492 HELICc3 helicase su 94.2 0.26 5.5E-06 52.6 9.7 51 1028-1078 25-78 (141)
418 cd00009 AAA The AAA+ (ATPases 94.2 0.25 5.3E-06 52.1 9.8 19 765-783 19-37 (151)
419 PRK04296 thymidine kinase; Pro 94.1 0.065 1.4E-06 60.3 5.3 35 767-813 4-38 (190)
420 PRK06526 transposase; Provisio 94.1 0.1 2.2E-06 61.5 7.0 24 1436-1459 94-117 (254)
421 PRK06835 DNA replication prote 94.0 0.32 6.9E-06 59.4 11.4 18 765-782 183-200 (329)
422 COG1875 NYN ribonuclease and A 93.9 0.3 6.5E-06 58.3 10.3 133 745-908 223-376 (436)
423 COG2805 PilT Tfp pilus assembl 93.9 0.16 3.4E-06 59.2 7.7 143 1397-1583 100-247 (353)
424 cd00009 AAA The AAA+ (ATPases 93.9 0.28 6.1E-06 51.6 9.5 18 1440-1457 19-36 (151)
425 PF05970 PIF1: PIF1-like helic 93.7 0.18 3.9E-06 62.9 8.7 60 750-821 1-66 (364)
426 PRK07952 DNA replication prote 93.6 0.53 1.1E-05 55.0 11.8 18 766-783 100-117 (244)
427 smart00491 HELICc2 helicase su 93.6 0.27 5.9E-06 52.5 8.7 67 1038-1104 32-136 (142)
428 PF01695 IstB_IS21: IstB-like 93.6 0.14 3.1E-06 56.9 6.8 94 731-888 9-117 (178)
429 PRK12723 flagellar biosynthesi 93.5 1.4 3.1E-05 54.8 15.9 92 1440-1567 174-267 (388)
430 PRK06893 DNA replication initi 93.5 0.2 4.2E-06 58.3 7.9 15 767-781 41-55 (229)
431 PRK04296 thymidine kinase; Pro 93.3 0.13 2.8E-06 57.9 6.0 34 1443-1488 5-38 (190)
432 PF05127 Helicase_RecD: Helica 93.2 0.17 3.7E-06 55.7 6.4 103 769-892 1-103 (177)
433 PF00448 SRP54: SRP54-type pro 93.1 1.3 2.9E-05 50.0 13.6 20 768-787 4-23 (196)
434 COG5008 PilU Tfp pilus assembl 93.1 0.11 2.3E-06 59.0 4.6 40 723-781 103-143 (375)
435 PRK08181 transposase; Validate 93.0 0.45 9.7E-06 56.4 10.0 22 1437-1458 103-124 (269)
436 TIGR01075 uvrD DNA helicase II 92.9 0.28 6.1E-06 66.8 9.4 109 749-890 3-114 (715)
437 smart00382 AAA ATPases associa 92.9 0.096 2.1E-06 54.7 3.9 20 1440-1459 2-21 (148)
438 KOG0701|consensus 92.8 0.079 1.7E-06 74.4 3.9 95 1676-1770 293-399 (1606)
439 PRK11054 helD DNA helicase IV; 92.8 0.35 7.5E-06 64.8 9.7 73 746-828 192-264 (684)
440 PRK14974 cell division protein 92.7 0.85 1.8E-05 55.8 12.2 131 1441-1632 141-276 (336)
441 PRK11773 uvrD DNA-dependent he 92.7 0.33 7.2E-06 66.1 9.7 110 749-890 8-119 (721)
442 PRK11331 5-methylcytosine-spec 92.7 0.32 7E-06 60.8 8.6 34 750-783 179-212 (459)
443 PRK14722 flhF flagellar biosyn 92.7 0.18 4E-06 62.1 6.4 24 764-787 136-159 (374)
444 KOG0796|consensus 92.7 0.06 1.3E-06 62.8 2.1 39 127-166 45-91 (319)
445 COG1484 DnaC DNA replication p 92.6 0.35 7.6E-06 57.0 8.4 51 1439-1502 104-154 (254)
446 PRK05703 flhF flagellar biosyn 92.5 2.6 5.7E-05 53.5 16.5 22 765-786 221-242 (424)
447 TIGR02881 spore_V_K stage V sp 92.5 0.44 9.6E-06 56.6 9.2 20 766-785 43-62 (261)
448 KOG0670|consensus 92.4 0.1 2.2E-06 64.1 3.7 17 817-833 516-532 (752)
449 COG1484 DnaC DNA replication p 92.3 0.23 5.1E-06 58.4 6.5 51 764-827 104-154 (254)
450 COG4962 CpaF Flp pilus assembl 92.3 0.2 4.4E-06 59.8 5.8 62 746-820 153-215 (355)
451 PRK05642 DNA replication initi 92.3 0.35 7.7E-06 56.3 7.8 16 766-781 46-61 (234)
452 PRK07952 DNA replication prote 92.2 1.1 2.4E-05 52.3 11.8 18 1441-1458 100-117 (244)
453 PHA02533 17 large terminase pr 92.2 0.52 1.1E-05 61.3 10.0 122 750-892 59-182 (534)
454 KOG0733|consensus 92.2 1.5 3.2E-05 55.7 13.1 16 767-782 547-562 (802)
455 TIGR01074 rep ATP-dependent DN 92.2 0.5 1.1E-05 64.0 10.4 109 751-890 2-112 (664)
456 PRK06921 hypothetical protein; 92.2 0.99 2.1E-05 53.6 11.5 18 765-782 117-134 (266)
457 cd01120 RecA-like_NTPases RecA 92.2 1.2 2.7E-05 47.9 11.6 38 768-817 2-39 (165)
458 PF05621 TniB: Bacterial TniB 92.1 0.47 1E-05 56.3 8.5 101 766-897 62-163 (302)
459 PRK13894 conjugal transfer ATP 92.1 0.38 8.2E-06 58.5 8.1 67 740-818 124-191 (319)
460 PF13871 Helicase_C_4: Helicas 92.1 0.37 8E-06 56.7 7.6 81 1041-1121 52-144 (278)
461 cd01120 RecA-like_NTPases RecA 92.0 1.2 2.5E-05 48.1 11.1 38 1443-1492 2-39 (165)
462 PF00004 AAA: ATPase family as 91.9 0.41 8.9E-06 49.8 7.2 16 768-783 1-16 (132)
463 PRK08084 DNA replication initi 91.9 0.45 9.6E-06 55.6 8.1 18 766-783 46-63 (235)
464 PRK06835 DNA replication prote 91.9 0.57 1.2E-05 57.2 9.2 46 1439-1497 182-227 (329)
465 PRK06893 DNA replication initi 91.9 0.44 9.6E-06 55.4 8.0 16 1442-1457 41-56 (229)
466 TIGR02760 TraI_TIGR conjugativ 91.8 5.8 0.00013 59.6 20.9 62 1425-1498 429-492 (1960)
467 PRK06731 flhF flagellar biosyn 91.6 3.8 8.2E-05 48.7 15.4 23 764-786 74-96 (270)
468 PRK10919 ATP-dependent DNA hel 91.6 0.32 6.9E-06 65.6 7.3 110 750-890 2-113 (672)
469 PRK13833 conjugal transfer pro 91.6 0.51 1.1E-05 57.3 8.3 65 742-818 122-187 (323)
470 PRK12726 flagellar biosynthesi 91.5 2.7 5.7E-05 51.8 14.2 23 764-786 205-227 (407)
471 KOG0701|consensus 91.4 0.14 3.1E-06 72.0 3.8 95 1002-1096 294-400 (1606)
472 PRK11331 5-methylcytosine-spec 91.4 0.58 1.3E-05 58.7 8.6 33 1426-1458 180-212 (459)
473 PRK11889 flhF flagellar biosyn 91.3 4.1 8.8E-05 50.4 15.3 22 1440-1461 241-262 (436)
474 PRK12724 flagellar biosynthesi 91.2 2.9 6.2E-05 52.3 14.3 22 766-787 224-245 (432)
475 PRK06995 flhF flagellar biosyn 91.2 0.72 1.6E-05 58.8 9.4 90 765-866 256-346 (484)
476 TIGR01075 uvrD DNA helicase II 91.2 0.63 1.4E-05 63.5 9.6 71 1424-1504 3-73 (715)
477 PF05621 TniB: Bacterial TniB 91.1 0.54 1.2E-05 55.8 7.7 102 1441-1573 62-164 (302)
478 PRK08727 hypothetical protein; 91.0 0.58 1.3E-05 54.5 7.9 15 767-781 43-57 (233)
479 PRK06921 hypothetical protein; 90.9 1.2 2.6E-05 52.9 10.4 18 1440-1457 117-134 (266)
480 COG1444 Predicted P-loop ATPas 90.9 1.4 3.1E-05 58.3 11.8 141 1415-1583 204-348 (758)
481 PRK11773 uvrD DNA-dependent he 90.8 0.71 1.5E-05 63.0 9.6 71 1424-1504 8-78 (721)
482 TIGR02524 dot_icm_DotB Dot/Icm 90.8 0.28 6.1E-06 60.6 5.2 49 723-790 110-158 (358)
483 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.68 1.5E-05 53.5 8.2 96 765-947 38-134 (226)
484 PRK08727 hypothetical protein; 90.7 0.81 1.8E-05 53.3 8.7 17 1441-1457 42-58 (233)
485 COG1419 FlhF Flagellar GTP-bin 90.5 0.69 1.5E-05 56.8 8.0 89 765-890 203-292 (407)
486 TIGR02785 addA_Gpos recombinat 90.4 0.79 1.7E-05 66.0 9.9 123 751-890 2-126 (1232)
487 PRK05642 DNA replication initi 90.3 0.78 1.7E-05 53.5 8.1 16 1441-1456 46-61 (234)
488 PRK12377 putative replication 90.3 1.1 2.4E-05 52.5 9.3 46 766-824 102-147 (248)
489 PRK08116 hypothetical protein; 90.3 2.2 4.9E-05 50.7 12.0 145 730-951 70-227 (268)
490 COG1444 Predicted P-loop ATPas 90.3 2.6 5.7E-05 55.9 13.4 138 742-907 206-347 (758)
491 PRK13709 conjugal transfer nic 90.2 1 2.3E-05 65.4 10.6 65 749-821 966-1032(1747)
492 PTZ00112 origin recognition co 90.2 2.6 5.5E-05 56.4 12.9 18 1442-1459 782-800 (1164)
493 PRK00771 signal recognition pa 90.2 2.2 4.7E-05 54.1 12.3 21 766-786 96-116 (437)
494 PF05127 Helicase_RecD: Helica 90.1 0.18 3.9E-06 55.5 2.4 123 1444-1620 1-123 (177)
495 PHA02533 17 large terminase pr 90.1 0.71 1.5E-05 60.1 8.2 121 1425-1564 59-179 (534)
496 COG1474 CDC6 Cdc6-related prot 89.9 2.2 4.8E-05 53.0 11.9 114 756-906 30-149 (366)
497 cd01124 KaiC KaiC is a circadi 89.9 1 2.2E-05 50.3 8.4 112 768-907 2-126 (187)
498 TIGR03420 DnaA_homol_Hda DnaA 89.9 1.2 2.6E-05 51.4 9.3 106 1430-1622 28-134 (226)
499 TIGR01074 rep ATP-dependent DN 89.9 1.2 2.5E-05 60.6 10.4 110 1425-1565 1-112 (664)
500 cd01126 TraG_VirD4 The TraG/Tr 89.9 0.26 5.6E-06 62.1 3.9 50 26-89 1-50 (384)
No 1
>KOG0333|consensus
Probab=100.00 E-value=1.1e-110 Score=967.57 Aligned_cols=567 Identities=72% Similarity=1.146 Sum_probs=549.9
Q ss_pred hhhhhHHHHHHhccccc-ccccccccCCCccccccCCCCcccccccccccccccccccCCCcccccchhhhhhhhhhhHH
Q psy6409 580 KEREGEAIKERYLGLVK-KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 658 (1832)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 658 (1832)
.+++...++++|+|..+ +|||.++.++++|+||||+.|||+.++++||..+|..++||||+++|+|++.|++.+++ ++
T Consensus 97 ~~K~~~ai~~rylg~~k~kkkk~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~-~~ 175 (673)
T KOG0333|consen 97 DEKEVRAIKERYLGEVKPKKKKGRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSK-YG 175 (673)
T ss_pred HHHHHHHHHHHHhcccCccccccccccccceEEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhh-hh
Confidence 56889999999999888 66666777899999999999999999999999999999999999999999999999888 99
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhHHhhccccccCCChhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHH
Q psy6409 659 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTE 738 (1832)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~ 738 (1832)
++++++.++.+++++++..++..+++.+..|+++||+++.+++|+++||++|+++|+|.++|+.+|.|+++|++.+||..
T Consensus 176 ~~~e~r~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e 255 (673)
T KOG0333|consen 176 EMMEKRRTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLE 255 (673)
T ss_pred hHhhhhcchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
++++|.+.||..|||||++|||..++++|+|++|+||||||++|++|++.+|..+|.+........||+++||+|||+||
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLa 335 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELA 335 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChH
Q psy6409 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 819 ~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
+||.++..+|+.++|++++.++||.+.++|...+..+|+|+|||||+|+|+|.+.++.+++|.+||+||||+|+|+||++
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~ 415 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP 415 (673)
T ss_pred HHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
++..|+..+|..+..|++...+....++.++.....++|+++||||||+.++.+++.||.+|+.++++..+.+.+.++|.
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 979 ~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
++.+.++.|...|.++|.....+|+|||+|+++.|+.||+.|.+.|+.++.+||+.+|++|+.++..|++|..+||||||
T Consensus 496 v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD 575 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD 575 (673)
T ss_pred EEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCccccccccccccccc
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFC 1138 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~ 1138 (1832)
+++||||||+|++||||||++++++|+||||||||+|+.|+|++|+++.|
T Consensus 576 vAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d------------------------------ 625 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD------------------------------ 625 (673)
T ss_pred ccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccch------------------------------
Confidence 99999999999999999999999999999999999999999999999988
Q ss_pred ccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCccccc
Q psy6409 1139 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMA 1181 (1832)
Q Consensus 1139 ~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1181 (1832)
..++|||++++.++..+.|||+|.+|++++.+++.+...
T Consensus 626 ----t~v~ydLkq~l~es~~s~~P~Ela~h~~a~~K~~~~~~k 664 (673)
T KOG0333|consen 626 ----TAVFYDLKQALRESVKSHCPPELANHPDAQFKPGTIKAK 664 (673)
T ss_pred ----hHHHHHHHHHHHHhhhccCChhhccChhhcccccccccc
Confidence 678999999999999999999999999999998866544
No 2
>KOG0333|consensus
Probab=100.00 E-value=1.2e-103 Score=909.00 Aligned_cols=576 Identities=72% Similarity=1.134 Sum_probs=560.5
Q ss_pred chHHHHHHHHHhcchhh-hhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhccchhhhHH
Q psy6409 1255 KEREGEAIKERYLGLVK-KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 1333 (1832)
Q Consensus 1255 ~~~el~~l~~~~~~~~~-~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~f~~ 1333 (1832)
.++++..++++|+|..+ ++++.+++++.+|.|+|++.+||+.+++++|+.++..++||+|.++|+|+++|++.++. +.
T Consensus 97 ~~K~~~ai~~rylg~~k~kkkk~r~~~~~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~-~~ 175 (673)
T KOG0333|consen 97 DEKEVRAIKERYLGEVKPKKKKGRRLNDKKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSK-YG 175 (673)
T ss_pred HHHHHHHHHHHHhcccCccccccccccccceEEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhh-hh
Confidence 56899999999999988 77888999999999999999999999999999999999999999999999999999888 88
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhhhHHhhhcccCCCCChhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHH
Q psy6409 1334 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTE 1413 (1832)
Q Consensus 1334 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ 1413 (1832)
.+++.+..+.++++++....+..+.+.+..|+|.||+++.+.+|++++|++|+++++|.++|+.+|.|+++|++.+||..
T Consensus 176 ~~~e~r~t~~~ke~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e 255 (673)
T KOG0333|consen 176 EMMEKRRTEDEKEQEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLE 255 (673)
T ss_pred hHhhhhcchhhhhhHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHH
Confidence 88999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHH
Q psy6409 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493 (1832)
Q Consensus 1414 ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa 1493 (1832)
+++++.+.||..|+|||++|||.+++.+|+|++|.||||||++|++|++.+|..+|.+.+......||+++||+|||+||
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLa 335 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELA 335 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChH
Q psy6409 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1494 ~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+||..+..+|+..+|++++.++||.+.+++.+.++.+|+|+||||++|+++|.+.++.+++|.+||+||||+|+|+||++
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~ 415 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP 415 (673)
T ss_pred HHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~ 1653 (1832)
++..|+..||..+..+++........++.++.....++|+++||||||+.++.+++.||.+|..+.++..+.+.+.++|.
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheE
Confidence 99999999999999998888888888888888888999999999999999999999999999999999999999999999
Q ss_pred EEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1654 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1654 ~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
++.+.+..|...|..++......|+|||+|+++.|+.||+.|.+.|+.+..+||+.++++|+.+++.|++|..+||||||
T Consensus 496 v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD 575 (673)
T KOG0333|consen 496 VEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD 575 (673)
T ss_pred EEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCc
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQ 1813 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~ 1813 (1832)
+++||||||+|++||||||++++++|+||||||||+|+.|+|++|+++.|...|++|++++..+..+++|++|.+|+.|+
T Consensus 576 vAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~ 655 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQ 655 (673)
T ss_pred ccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCccccccccccccccC
Q psy6409 1814 HKPGTVMVPKKRREEKIFA 1832 (1832)
Q Consensus 1814 ~~~gti~~~~~~~~~~~~~ 1832 (1832)
+++|+++.|+ ++.++|+|
T Consensus 656 ~K~~~~~~k~-~~~e~i~~ 673 (673)
T KOG0333|consen 656 FKPGTIKAKK-REPETIRY 673 (673)
T ss_pred cccccccccc-cCcccccC
Confidence 9999999776 89999886
No 3
>KOG0951|consensus
Probab=100.00 E-value=2.7e-78 Score=750.38 Aligned_cols=1004 Identities=18% Similarity=0.207 Sum_probs=714.1
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
-..+|.|-..++. |+..+++||..+.++++.+ .|+++|||||+|||+++++.||+.+..+... .+.......+++|
T Consensus 293 iselP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~-dgs~nl~~fKIVY 369 (1674)
T KOG0951|consen 293 ISELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE-DGSVNLAPFKIVY 369 (1674)
T ss_pred ecCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc-ccceecccceEEE
Confidence 3468888888885 7778999999999999986 6899999999999999999999988654331 1222345679999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEec
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDE 887 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDE 887 (1832)
++|+++|++.+...|.+...++||+|+..+|+.....+... +++|+|+||++| |.++++.- ..+-++++|+||
T Consensus 370 IAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie---eTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDE 445 (1674)
T KOG0951|consen 370 IAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDE 445 (1674)
T ss_pred EeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh---cceeEEeccchh-hhhhcccCchhHHHHHHHHhhhh
Confidence 99999999999999999999999999999999987766554 799999999999 99988743 455789999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE-EEEc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIG 966 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~-v~~~ 966 (1832)
.| |++..++|.++.|+.++ .+.........+++++|||+|++.+ .+.....+|.. ++++
T Consensus 446 IH-LLhDdRGpvLESIVaRt------------------~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd 505 (1674)
T KOG0951|consen 446 IH-LLHDDRGPVLESIVART------------------FRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFD 505 (1674)
T ss_pred hh-hcccccchHHHHHHHHH------------------HHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccC
Confidence 99 66678999999999887 3444556677899999999998654 44444444433 4444
Q ss_pred ccCCCCcceEEEEEEcchhhHHHH--------HHHHHHcCCCCCEEEEEcccchHHHHHHHHHH----------------
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKK--------LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---------------- 1022 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~--------L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---------------- 1022 (1832)
+...+ ..+.|.++.+.+...... .-.++......++||||++|+++..+|+.++.
T Consensus 506 ~syRp-vPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s 584 (1674)
T KOG0951|consen 506 SSYRP-VPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDS 584 (1674)
T ss_pred cccCc-CCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhccc
Confidence 44444 446666666654432222 22345555668999999999999999988752
Q ss_pred ---------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcCC
Q psy6409 1023 ---------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDM 1077 (1832)
Q Consensus 1023 ---------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~ 1077 (1832)
+.+++++||+||++.+|..+.+.|++|.++|||+|.+++||+|+|+.+++| .||+
T Consensus 585 ~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~p 664 (1674)
T KOG0951|consen 585 ASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDP 664 (1674)
T ss_pred chhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCc
Confidence 136789999999999999999999999999999999999999999999999 5766
Q ss_pred ------CCCHhHHHHHhcccccCCCC--cEEEEEecCC---------------CchHHHHHHHHHhcCCccccccccccc
Q psy6409 1078 ------AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD---------------DSHLFYDLKQMMISSPVTGRAGKEGLA 1134 (1832)
Q Consensus 1078 ------p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~---------------d~~~~~~l~~~l~~~~~~~~~~~~~~~ 1134 (1832)
+.++.+.+||+|||||.+.+ |.++++...+ +++++..+.+.+|++++.| +.+..++
T Consensus 665 ekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~ 743 (1674)
T KOG0951|consen 665 EKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDA 743 (1674)
T ss_pred ccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHH
Confidence 45899999999999998766 6666665554 6788888999999999999 9999999
Q ss_pred ccccccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCccccc
Q psy6409 1135 VSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSP 1214 (1832)
Q Consensus 1135 v~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1214 (1832)
+.|+.+++..+...-...+........+..+....+........... .......++..+....+..|+.++.
T Consensus 744 ~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~--------~~~li~yd~~s~~~~~telg~ias~ 815 (1674)
T KOG0951|consen 744 VDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLD--------KAGLIKYDRKSGAIQATELGRIASS 815 (1674)
T ss_pred HhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHh--------hcCccccccccCcccchhhccccce
Confidence 99998777655544444433221111122222222111110000000 0112223333444556678888888
Q ss_pred ccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHH----------------------HHhcch-
Q psy6409 1215 QCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIK----------------------ERYLGL- 1269 (1832)
Q Consensus 1215 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~----------------------~~~~~~- 1269 (1832)
||..+++ ...+-.+.+.+...++++.|+.+++|.-+.+|+++ .||..+. +.|.+.
T Consensus 816 yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~l 895 (1674)
T KOG0951|consen 816 YYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQL 895 (1674)
T ss_pred eeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhc
Confidence 8888888 45566778888889999999999999999999887 6777644 334333
Q ss_pred ---------------hhhhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhcc---chhhh
Q psy6409 1270 ---------------VKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKR---DQSKF 1331 (1832)
Q Consensus 1270 ---------------~~~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~f 1331 (1832)
+.++|++|+++++..+.+|++.+.-++++|+++..++|+.+-....++|+.....++ ....|
T Consensus 896 k~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~ 975 (1674)
T KOG0951|consen 896 KLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPW 975 (1674)
T ss_pred ccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcc
Confidence 225789999999999999999999999999999999999988888888875332211 22222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhh-------H---------------HhhhcccCCCC--------------------
Q psy6409 1332 YGEMLEKRRTEAEKEQEKVRLKKVKK-------R---------------EEKQKWDDRHW-------------------- 1369 (1832)
Q Consensus 1332 ~~~~~~~~~~~~~~~~~~~~~~~~~k-------~---------------~~~~~~~~~~~-------------------- 1369 (1832)
.........+..+.....+..+...+ . .+.....+..|
T Consensus 976 ~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dg 1055 (1674)
T KOG0951|consen 976 GRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDG 1055 (1674)
T ss_pred hhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCc
Confidence 22211111111111110000111110 0 00000011222
Q ss_pred ---------------------------ChhhhcccCHHHHHHHHhcccceecCCCCCCCcCC---cccC-CCCHHHHHHH
Q psy6409 1370 ---------------------------TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRN---WKEA-SLPTEILEII 1418 (1832)
Q Consensus 1370 ---------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~---~~e~-~L~~~ll~~l 1418 (1832)
++..+-.+-+..|..-....++.+.+..+|..... |-++ ++|..-+.+-
T Consensus 1056 e~il~~e~~~~~k~~~~v~ft~~~~~~pP~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~ 1135 (1674)
T KOG0951|consen 1056 EKILHHEFFLLKKKEHTVNFTVPLFEPPPQYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNP 1135 (1674)
T ss_pred cceeeeeeEEeccCceEEEEEeecCCCCCceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCc
Confidence 11222333444555555555555555554432221 2111 2222211111
Q ss_pred H-HcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1419 E-KIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1419 ~-~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
. .-=|...+|+|.|+++.+++. ++++++||+|||||+|+.++++. .....++++++|.-+.+..+
T Consensus 1136 ~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------------~~~~~~~vyi~p~~~i~~~~ 1202 (1674)
T KOG0951|consen 1136 SFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------------PDTIGRAVYIAPLEEIADEQ 1202 (1674)
T ss_pred chhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------------CccceEEEEecchHHHHHHH
Confidence 1 112345599999999999865 67999999999999999999874 23567899999999999877
Q ss_pred HHHHH-HhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1497 EEETN-KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1497 ~~~~~-~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
+..|. +|....|..++.++|..+.+.. +....+|+|+||++|..+ + ..+++++.|.||+|.+. ..+++.+
T Consensus 1203 ~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~ig-g~~g~v~ 1273 (1674)
T KOG0951|consen 1203 YRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIG-GVYGAVY 1273 (1674)
T ss_pred HHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhc-ccCCceE
Confidence 76665 5667789999999998886644 445789999999999766 2 68899999999999554 4456666
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV- 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~- 1654 (1832)
+.|++ +... ..+..+..+++.+|..+.+.-.. .++.....+++.+..++.+...++-
T Consensus 1274 evi~S-~r~i------------------a~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~ 1331 (1674)
T KOG0951|consen 1274 EVICS-MRYI------------------ASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQS 1331 (1674)
T ss_pred EEEee-HHHH------------------HHHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEE
Confidence 66655 3211 01222556899999888776443 3344445555555555555443332
Q ss_pred -EEc-----chhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHH------------------------cCCcEE
Q psy6409 1655 -YIL-----SEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEK------------------------LGYNAC 1703 (1832)
Q Consensus 1655 -~~~-----~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~------------------------~~~~v~ 1703 (1832)
... ...+-...+.++.+.. ..+|.+||++++++|..++..|-. +..+|+
T Consensus 1332 ~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg 1411 (1674)
T KOG0951|consen 1332 VDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG 1411 (1674)
T ss_pred eccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc
Confidence 111 1122333444455443 678999999999999998876532 123444
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC------CCCCHHHHHHHhcccccCCCcc
Q psy6409 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD------MAKSIEDYTHRIGRTGRAGKEG 1773 (1832)
Q Consensus 1704 ~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d------~P~s~~~yiQRiGRaGR~g~~G 1773 (1832)
|-+++..+...+...|..|.++|+|...- .+|+-....-+||. || .+.++.+.+||+|+|.| .|
T Consensus 1412 --~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~ 1485 (1674)
T KOG0951|consen 1412 --HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AG 1485 (1674)
T ss_pred --ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---Cc
Confidence 99999999999999999999999999877 89998866555553 33 24469999999999988 68
Q ss_pred EEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCcccccc
Q psy6409 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1774 ~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
.|+++++..++.+|+++...+.|.+ +.+...|++++|++++.+||.+|+
T Consensus 1486 k~vi~~~~~~k~yykkfl~e~lPve-s~lq~~lhd~~n~ei~~~tienkq 1534 (1674)
T KOG0951|consen 1486 KCVIMCHTPKKEYYKKFLYEPLPVE-SHLQHCLHDNFNAEIVTKTIENKQ 1534 (1674)
T ss_pred cEEEEecCchHHHHHHhccCcCchH-HHHHHHHHhhhhHHHHHHHHHhHH
Confidence 9999999999999999999999997 999999999999999999999765
No 4
>KOG0341|consensus
Probab=100.00 E-value=4.3e-75 Score=647.07 Aligned_cols=459 Identities=37% Similarity=0.682 Sum_probs=413.8
Q ss_pred ccCCCh-hhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEE
Q psy6409 691 DRHWTE-KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769 (1832)
Q Consensus 691 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvI 769 (1832)
...|.. .-+..|++++.+..|..++|.+.|..+|.||.+|.++.+|..+++.|++.|+..|||||.+.+|.+++|||+|
T Consensus 132 ~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmI 211 (610)
T KOG0341|consen 132 KTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMI 211 (610)
T ss_pred hhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCcee
Confidence 356764 3577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC------CCeEEEEEcCC
Q psy6409 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL------GIRTVLVVGGL 843 (1832)
Q Consensus 770 v~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~------~i~v~~~~Gg~ 843 (1832)
++|-||||||++|+||++.+.++..-... -....||..||+||+||||.|++..+..+...+ .++.+.++||.
T Consensus 212 GIAfTGSGKTlvFvLP~imf~LeqE~~lP-f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~ 290 (610)
T KOG0341|consen 212 GIAFTGSGKTLVFVLPVIMFALEQEMMLP-FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGV 290 (610)
T ss_pred eEEeecCCceEEEeHHHHHHHHHHHhcCc-cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCc
Confidence 99999999999999999987654322111 134679999999999999999999998875433 47889999999
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
+..+|...++.|.||+|+|||+|.|+|..+.+.|.-|+||++||||+|+|+||+.+++.|+..+.
T Consensus 291 ~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK--------------- 355 (610)
T KOG0341|consen 291 PVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK--------------- 355 (610)
T ss_pred cHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCE
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~v 1003 (1832)
..+|+++||||||..++.|+++-+..|+.+.++..+..+.++.|.+.++..++|+..|+++|+. ..+|+
T Consensus 356 ----------~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK-T~PpV 424 (610)
T KOG0341|consen 356 ----------GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK-TSPPV 424 (610)
T ss_pred ----------hhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc-CCCce
Confidence 3589999999999999999999999999999999999999999999999999999999999985 45689
Q ss_pred EEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhH
Q psy6409 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083 (1832)
Q Consensus 1004 IVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~ 1083 (1832)
||||..+..++.++++|-..|+.++.+|||..|++|...++.|+.|+.+||||||+++.|+|+|+|.||||||+|..+++
T Consensus 425 LIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIEN 504 (610)
T KOG0341|consen 425 LIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIEN 504 (610)
T ss_pred EEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHhhhcCCCCCCch
Q psy6409 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPP 1163 (1832)
Q Consensus 1084 yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 1163 (1832)
|+||+|||||.|+.|.|.+|++...+ ..++.||+.+|.++. ..+||
T Consensus 505 YVHRIGRTGRsg~~GiATTfINK~~~---------------------------------esvLlDLK~LL~Eak-Q~vP~ 550 (610)
T KOG0341|consen 505 YVHRIGRTGRSGKTGIATTFINKNQE---------------------------------ESVLLDLKHLLQEAK-QEVPP 550 (610)
T ss_pred HHHHhcccCCCCCcceeeeeecccch---------------------------------HHHHHHHHHHHHHhh-ccCCH
Confidence 99999999999999999999998742 456788999998876 47899
Q ss_pred hhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccccccCcccccccCCCccccchhH
Q psy6409 1164 ELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSACSLPRSHKSSSL 1237 (1832)
Q Consensus 1164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1832)
.|..+...... .....+ .|..+|.|||+.+|++.+||+++.+++..+
T Consensus 551 ~L~~L~~~~E~-~~~a~~--------------------------~~~kGCayCgGLGHRItdCPKle~~~~k~~ 597 (610)
T KOG0341|consen 551 VLAELAGPMEE-ETIADA--------------------------GGEKGCAYCGGLGHRITDCPKLEAQQNKQI 597 (610)
T ss_pred HHHHhCCCccc-cccccC--------------------------CCccccccccCCCcccccCchhhhhcchhh
Confidence 98776554332 111111 356899999999999999999999876554
No 5
>KOG0952|consensus
Probab=100.00 E-value=1.1e-73 Score=705.39 Aligned_cols=874 Identities=19% Similarity=0.208 Sum_probs=600.0
Q ss_pred cCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
++|..++.+|+.++|.++. +.|+|||||||||||.+|+|.||+.|.+ +........++.+++||+||++||.++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~--~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE--HEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh--hccccccccCCceEEEEechHHHHHHHHHH
Confidence 5889999999999999996 6899999999999999999999999976 223344567889999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc----ccCCceeEEEecchhhhcCCChHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRMIDMGFEPDV 900 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----~l~~~~~lViDEaH~l~d~gf~~~i 900 (1832)
+.+.+.++|++|..++|++...+.... .|+|||+||++| |+++|+.. ..+.+.+|||||+| |+...++|.+
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei~---~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEIA---DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHHH---hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 999999999999999999998776533 799999999999 99988764 56789999999999 6677899999
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEE
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p-~~v~~~~~~~~~~~i~q~~ 979 (1832)
+.|++++ ++.+++.+..+++|++|||+|+.. +++...-.+| ..++..+....+..+.+.+
T Consensus 259 EtiVaRt------------------lr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRPvpL~~~~ 319 (1230)
T KOG0952|consen 259 ETIVART------------------LRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRPVPLTQGF 319 (1230)
T ss_pred HHHHHHH------------------HHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccccceeeeE
Confidence 9999987 667778888999999999999854 4665554442 3333333333444566666
Q ss_pred EEcchh-----------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-----------------------CC
Q psy6409 980 YILSEQ-----------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-----------------------GY 1025 (1832)
Q Consensus 980 ~~~~~~-----------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-----------------------g~ 1025 (1832)
+..... .....+.+.+. .+.+++|||+++..+..+|+.|.+. ..
T Consensus 320 iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~ 397 (1230)
T KOG0952|consen 320 IGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQ 397 (1230)
T ss_pred EeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHh
Confidence 655433 12233444443 4678999999999999999998543 13
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcCCCC------CHhHHHHHhcccccCC
Q psy6409 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDMAK------SIEDYTHRIGRTGRAG 1095 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~p~------s~~~yvQr~GRaGR~g 1095 (1832)
+.+++|+||...+|..+.+.|..|.++|||||.+++||+|+|+..++| .||.-+ ++.+.+|.+|||||++
T Consensus 398 g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 398 GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 578899999999999999999999999999999999999999988887 466544 6889999999999976
Q ss_pred C--CcEEEEEecCC---------------CchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHhhhcCCC
Q psy6409 1096 K--EGLAVSFCTKD---------------DSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1158 (1832)
Q Consensus 1096 ~--~G~ai~~~~~~---------------d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~~~ 1158 (1832)
. .|.++++.+.+ |++++..|.++||+|+.+||+.++.+||.|+.+++..+.+.-.++.+.-..
T Consensus 478 Fd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~ 557 (1230)
T KOG0952|consen 478 FDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISY 557 (1230)
T ss_pred CCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhh
Confidence 4 49999999988 889999999999999999999999999999998887765544444332111
Q ss_pred --CCCchhhcCCCcc-c-CCCCcccccCCccccCCChhhhccccccccccccccCcccccccccCcc-cccccCCCcccc
Q psy6409 1159 --STCPPELLNHPDA-Q-HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSS-RFSACSLPRSHK 1233 (1832)
Q Consensus 1159 --~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1233 (1832)
....|.+..|... | .+....... ...+.+........+.+||.++.||+.+.+ .+++.....++.
T Consensus 558 ~~l~~dp~l~s~~~~l~~~~~~~L~~~----------qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~s 627 (1230)
T KOG0952|consen 558 EELEPDPRLESHRRELCLVAAMELDKV----------QMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYS 627 (1230)
T ss_pred hcccCCchHHHHHHHHHHHHHHHhhhh----------heEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCC
Confidence 1122333322211 0 000000000 112222333445566789999999999999 666777778999
Q ss_pred chhHhhhhccCchhhhhhcccch-HHHHHHHHHhcchhh------------------------------------hhcce
Q psy6409 1234 SSSLLSRYSEQDPEEKELNKDKE-REGEAIKERYLGLVK------------------------------------KKRRV 1276 (1832)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~~~~~~~------------------------------------~~~~~ 1276 (1832)
..++|++.+.++||..+++|++| +||+.|...+++... .+|..
T Consensus 628 e~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ 707 (1230)
T KOG0952|consen 628 EDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGGEKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRIS 707 (1230)
T ss_pred HHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccccchhHHHHHHhhhhccceeeeeeccCcccccccHHHHH
Confidence 99999999999999999999888 899988866443211 12334
Q ss_pred ecccCcceeeccCCCcCCccccchhhhcccccccccccccccc-chhhhccchhhhHHHHHHhhhhhHHHHHH-HHHHHH
Q psy6409 1277 RRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI-DIKAQKRDQSKFYGEMLEKRRTEAEKEQE-KVRLKK 1354 (1832)
Q Consensus 1277 ~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~ 1354 (1832)
+.+++..+.-.|.......+.+|+.++.++|..+.....+.+. .++.+... ....+... ..++.-.. ....+.
T Consensus 708 ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~~~~~~~~----~l~~L~~~-~~g~~w~~~~~~~k~ 782 (1230)
T KOG0952|consen 708 RALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLNRKERKKL----TLLLLRKD-ELGELWHNVPYGLKQ 782 (1230)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccchhhhhcc----hHHhhhhh-hhccccccCchhhhh
Confidence 4444555555666666666677777777777654333333222 11111000 00000000 00000000 000000
Q ss_pred hhh------------------HHhhhcccCCCCChhhhcc----------------------------------------
Q psy6409 1355 VKK------------------REEKQKWDDRHWTEKSLDE---------------------------------------- 1376 (1832)
Q Consensus 1355 ~~k------------------~~~~~~~~~~~~~~~~~~~---------------------------------------- 1376 (1832)
... +-....+.+..|.+.....
T Consensus 783 l~~ip~v~v~a~~~p~t~~vlri~~~~~~~f~w~~~~hg~~g~~i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipi 862 (1230)
T KOG0952|consen 783 LSGIPLVNVEALIQPITRNVLRIEVAITPDFEWNDGIHGKAGQPIFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPI 862 (1230)
T ss_pred hccCCceehhhhhccchhhhheeeeccCCceEEecccccccCceeEeecCCCCcceeeeeehhhhhhhhhhhheeEEeec
Confidence 000 0000111112221110000
Q ss_pred -----------cCHHHHHHHHhcccceecCCCCCCCcCCcccC-CCCHHHHHHHH----HcCCCCCcHHHHHHHHHHhc-
Q psy6409 1377 -----------MTERDWRIFREDYSITIKGGKVPDPVRNWKEA-SLPTEILEIIE----KIGYAEPTPIQRQAIPIGLQ- 1439 (1832)
Q Consensus 1377 -----------~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~-~L~~~ll~~l~----~~g~~~ptpiQ~~ai~~il~- 1439 (1832)
.....|..+..-..+.+....+|.......++ .+.+....+|. ..-+..++|+|.+.|..++.
T Consensus 863 s~pLps~~~~~~~s~~~l~~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~t 942 (1230)
T KOG0952|consen 863 SDPLPSQIRHRAVSDNWLGAETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHT 942 (1230)
T ss_pred ccCCccceEEeeecccccCCceeccccccceeccccccccccccccCCCcchhhccccHHHhhcccCCccceEEEEEeec
Confidence 00011111111112222222223222222111 12222222222 22344778899998887774
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
..++++.+|||||||++|.++++..+... .+.+|+|++|.++|+....+.|.+.....|++++.++|+..
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~----------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~ 1012 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYY----------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVT 1012 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccC----------CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccC
Confidence 46899999999999999999998766553 35789999999999999888887765555999999999999
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 1597 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~ 1597 (1832)
++.... ..++|+|+||++|.++.++|. -.+++|+++|+||.| +++.+++|.++.|.+.+...+.
T Consensus 1013 pd~~~v---~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~h-llg~~rgPVle~ivsr~n~~s~---------- 1078 (1230)
T KOG0952|consen 1013 PDVKAV---READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIH-LLGEDRGPVLEVIVSRMNYISS---------- 1078 (1230)
T ss_pred CChhhe---ecCceEEcccccccCccccccchhhhccccceeecccc-cccCCCcceEEEEeeccccCcc----------
Confidence 874322 368999999999999998654 578999999999999 6677888999888877764221
Q ss_pred HHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceE-------EEEEEcchhhHHHHHHHHH
Q psy6409 1598 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIE-------QIVYILSEQDKRKKLMEVL 1670 (1832)
Q Consensus 1598 ~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~-------q~~~~~~~~~k~~~l~~~l 1670 (1832)
......+.+++|..+.+.- ++ ..|++-+..+...+...+.+... +++++.+..++.+.+..+.
T Consensus 1079 --------~t~~~vr~~glsta~~na~-dl-a~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik 1148 (1230)
T KOG0952|consen 1079 --------QTEEPVRYLGLSTALANAN-DL-ADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIK 1148 (1230)
T ss_pred --------ccCcchhhhhHhhhhhccH-HH-HHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHh
Confidence 1224466777766554432 22 33444333233322333332221 3566667778888888888
Q ss_pred HhCCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1671 NRGVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1671 ~~~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
...+..|+|||+.++++....+..|.
T Consensus 1149 ~~sp~~p~lifv~srrqtrlta~~li 1174 (1230)
T KOG0952|consen 1149 THSPIKPVLIFVSSRRQTRLTALDLI 1174 (1230)
T ss_pred cCCCCCceEEEeecccccccchHhHH
Confidence 88899999999999999888777664
No 6
>KOG0331|consensus
Probab=100.00 E-value=5.7e-69 Score=649.03 Aligned_cols=364 Identities=45% Similarity=0.769 Sum_probs=341.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhc-hhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~-~~~~~~~~~~~~~ 806 (1832)
..|++++|++.+..+++..||..|||||.++||.+++|+|+|++|.||||||++|+||++.++... +. .....+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~----~~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGK----LSRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcccc----ccCCCCC
Confidence 378889999999999999999999999999999999999999999999999999999999999752 22 2345799
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
.+|||+||||||.|+...+.+++..+++++.|++||.+...|...+.++++|+|||||||+|+++.+.+.|++|.|+|+|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|+|+||+++++.|+..++. ..+|++++|||+|..+..++..|+.+|..+.++
T Consensus 247 EADrMldmGFe~qI~~Il~~i~~------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIPR------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcCC------------------------CcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 99999999999999999999952 235999999999999999999999999999998
Q ss_pred ccC--CCCcceEEEEEEcchhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 967 SVG--KPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 967 ~~~--~~~~~i~q~~~~~~~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 1041 (1832)
... ....++.|.+..+....|...|..+|... ..+++||||+|++.|+.|+..|...++++..|||+++|.+|..
T Consensus 303 ~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 303 NKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred chhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 654 66788999999999999998888888765 5679999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1042 il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+++.|++|++.||||||+|+||||||+|++|||||+|.++++|+||+|||||+|+.|.|++|++..+......+.+.+
T Consensus 383 ~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 383 VLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred HHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988777776654
No 7
>KOG0330|consensus
Probab=100.00 E-value=3.3e-68 Score=597.78 Aligned_cols=362 Identities=40% Similarity=0.654 Sum_probs=346.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
...+|.++++.+.+++++.+.||+.||+||+++||.++.|+|+|+.|+||||||.+|+|||++.+.+.| ..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---------KL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------CC
Confidence 456899999999999999999999999999999999999999999999999999999999999987643 34
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHH-ccccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~-~~~~~l~~~~~lV 884 (1832)
+++|||+||||||.||.+.|..++...|+++++++||++...|...+.+.+||||||||+|.+++. .+.+.+.+++++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999998 6778999999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||+++|++|.+.+..|+..+| ..+|+++||||||..+.++....+.+|..+.
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip-------------------------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIP-------------------------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcC-------------------------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 999999999999999999999997 3489999999999999999999999999999
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
........+.+.|.+..++...|...|+.+++...+.++||||++...+..++-.|..+|+.+..+||.|++..|..+++
T Consensus 265 ~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~ 344 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALN 344 (476)
T ss_pred ccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.|++|.++||||||+++||+|||.|++|||||+|.+..+|+||+||+||+|.+|.+|+|++.-|...+..|+..+-.
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGK 421 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888876543
No 8
>KOG0331|consensus
Probab=100.00 E-value=2.7e-66 Score=625.87 Aligned_cols=381 Identities=45% Similarity=0.762 Sum_probs=357.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh-CchhhcccccCCCc
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS-LPKIARMEDADQGP 1481 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~-~p~~~~~~~~~~~~ 1481 (1832)
..|.+++|++.+..+++..||..|||||.++||.++.|+|++++|.||||||++|++|++.++.. .+.. ....+|
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~----~~~~~P 166 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKL----SRGDGP 166 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccc----cCCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999876 3322 345799
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
.+|||+||||||.|+...+..++..++++++|++||.+...|...+.++++|+|||||+|.+++..+.+.+++|.|+|+|
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLD 246 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||+++++.|+..+|. ..+|++++|||+|..+..++..|+.+|..+.++
T Consensus 247 EADrMldmGFe~qI~~Il~~i~~------------------------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig 302 (519)
T KOG0331|consen 247 EADRMLDMGFEPQIRKILSQIPR------------------------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVG 302 (519)
T ss_pred cHHhhhccccHHHHHHHHHhcCC------------------------CcccEEEEeeeccHHHHHHHHHHhcCceEEEec
Confidence 99999999999999999999952 234899999999999999999999999999988
Q ss_pred ccC--CCCcceEEEEEEcchhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1642 SVG--KPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1642 ~~~--~~~~~i~q~~~~~~~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
... ....++.|++..++...|...|..+|... ...++||||+|++.|+.|+..|...++++..+||+++|.+|..
T Consensus 303 ~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 303 NKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred chhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 664 56788999999999999999988888765 5678999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
+++.|++|+..||||||+++||||||+|++|||||+|.++++||||+|||||+|+.|.|++|++..+......+...+..
T Consensus 383 ~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 383 VLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred HHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCChhhcCCCCC
Q psy6409 1797 SPVSTCPPELLNHPDA 1812 (1832)
Q Consensus 1797 ~~~~~~~~~L~~h~~a 1812 (1832)
.+ +.+|+.|......
T Consensus 463 ~~-q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 463 AG-QTVPPDLLEYARV 477 (519)
T ss_pred cc-CCCChHHHHHHhh
Confidence 86 8999998766443
No 9
>KOG0330|consensus
Probab=100.00 E-value=1.2e-64 Score=569.01 Aligned_cols=363 Identities=40% Similarity=0.655 Sum_probs=347.0
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
...+|.++++.+.+++++.+.||..||+||.++||.++.|+|+|+.|.||||||.+|+|||++.+...| ..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---------KL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------CC
Confidence 456899999999999999999999999999999999999999999999999999999999999887755 35
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCceeEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIV 1559 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~llV 1559 (1832)
+++|||+||||||.||...+..++..+|+++.++.||.+...+...+...++|||||||+|.+++.+ +.+.+.++.++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 8999999999999999999999999999999999999999999999999999999999999999984 678899999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
+||||+++++.|.+.+..|+..+| ..+|+++||||||..+..+....+.+|..+.
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip-------------------------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIP-------------------------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcC-------------------------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 999999999999999999999997 4579999999999999999999999999999
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.......+.+.|.|..++...|..+|+.+++.....++||||++..+++.++-.|..+|+.+..+||+|++..|..+++
T Consensus 265 ~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~ 344 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALN 344 (476)
T ss_pred ccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHH
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
.|++|..+||||||+++||+|||.|++|||||+|.+..+||||+||+||+|..|.+++|++.-|.+.+..++..+-..
T Consensus 345 ~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 345 KFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKK 422 (476)
T ss_pred HHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988766543
No 10
>KOG0338|consensus
Probab=100.00 E-value=1.2e-64 Score=582.89 Aligned_cols=360 Identities=39% Similarity=0.606 Sum_probs=335.0
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
..+|.+++|+..+++++..+||..|||||.++||.++-|+|+++||.||||||.+|+||+|..++--|. .....
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------~~~~T 253 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------KVAAT 253 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------cCcce
Confidence 458999999999999999999999999999999999999999999999999999999999998865443 23567
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lVi 885 (1832)
++|||+||||||.|++.++++++....|.++.++||.+...|...|+..++|||+|||+|+|+|.+. .+.++++.+|||
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999999999765 578999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||+|++.||..++..|+..+| +.+|+++|||||+..+..++...|+.|+.+++
T Consensus 334 DEADRMLeegFademnEii~lcp-------------------------k~RQTmLFSATMteeVkdL~slSL~kPvrifv 388 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCP-------------------------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFV 388 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-------------------------ccccceeehhhhHHHHHHHHHhhcCCCeEEEe
Confidence 99999999999999999999987 45899999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcc---hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILS---EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~---~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+........+.|.+.-+. +..+...|..++.......+|||+.|++.|..+.-.|-.+|++++-+||.++|.+|...
T Consensus 389 d~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 389 DPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred CCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 998888888888776543 34566677777777788899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
++.|++++++||||||+++|||||++|.+||||++|.++..|+||+|||+|+|+.|.+++|+..+|..++..+..
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887776654
No 11
>KOG0336|consensus
Probab=100.00 E-value=2.2e-63 Score=557.23 Aligned_cols=395 Identities=43% Similarity=0.699 Sum_probs=353.1
Q ss_pred hhhhhhccHHHHHHHH-hhccceecC------CCCCCcccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCc
Q psy6409 696 EKSLDEMTERDWRIFR-EDYSITIKG------GKVPDPVRNWKE-ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 767 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~-~~~~i~~~~------~~~p~p~~~f~~-~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grd 767 (1832)
......|++.+...++ +.++|.+.. ..+|+|..+|++ ++-.+++++.|++.||.+|||||++|||.+++|.|
T Consensus 180 ~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~D 259 (629)
T KOG0336|consen 180 SNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGID 259 (629)
T ss_pred CchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcc
Confidence 3455667877776555 567887642 358999999976 57788999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
+|++|.||+|||++|++|-+.+|...|... ....+|.+|++.|||+||.|+.-+..++.. -|.+.+|++||.+..+
T Consensus 260 liGVAQTgtgKtL~~L~pg~ihi~aqp~~~---~qr~~p~~lvl~ptreLalqie~e~~kysy-ng~ksvc~ygggnR~e 335 (629)
T KOG0336|consen 260 LIGVAQTGTGKTLAFLLPGFIHIDAQPKRR---EQRNGPGVLVLTPTRELALQIEGEVKKYSY-NGLKSVCVYGGGNRNE 335 (629)
T ss_pred eEEEEecCCCcCHHHhccceeeeeccchhh---hccCCCceEEEeccHHHHHHHHhHHhHhhh-cCcceEEEecCCCchh
Confidence 999999999999999999998887655432 256789999999999999999999988743 4889999999999999
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
|...++.+.+|+++|||+|.++...+.++|..+.||||||||+|+||||+|++..|+--+.
T Consensus 336 qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------- 396 (629)
T KOG0336|consen 336 QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------- 396 (629)
T ss_pred HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999986553
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC-cceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEE
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVII 1005 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~-~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIV 1005 (1832)
+++|+++.|||+|+.+..++..|+.+|..++++...... ..+.|.+....+..|...+..++... ...++||
T Consensus 397 ------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIi 470 (629)
T KOG0336|consen 397 ------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVII 470 (629)
T ss_pred ------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEE
Confidence 458999999999999999999999999999999887643 56788886667777777666666653 5678999
Q ss_pred EEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1006 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
||.++..|+.|...|...|+.+..+||+-.|.+|+.+++.|++|+++||||||+++||||+|+|+||+|||+|.+++.|+
T Consensus 471 Fv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYV 550 (629)
T KOG0336|consen 471 FVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYV 550 (629)
T ss_pred EEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1086 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1086 Qr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||+||+||+|+.|++++|++.+|..+...|-+.|
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~IL 584 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWSMAEELIQIL 584 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHHHHHHHHHHH
Confidence 9999999999999999999999977777766654
No 12
>KOG0341|consensus
Probab=100.00 E-value=1.5e-64 Score=562.83 Aligned_cols=415 Identities=40% Similarity=0.726 Sum_probs=383.6
Q ss_pred CCCCh-hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEE
Q psy6409 1367 RHWTE-KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445 (1832)
Q Consensus 1367 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii 1445 (1832)
..|.+ ..+..|++++....+..+.|.+.|..+|+|+.+|.++.+|..+++.|++.|+.+|||||.|.+|.+++|+|+|+
T Consensus 133 T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIG 212 (610)
T KOG0341|consen 133 TAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIG 212 (610)
T ss_pred hccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceee
Confidence 46754 56778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC------CCeEEEEECCcc
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL------GIRTVLVVGGLS 1519 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~------g~~v~~l~gg~~ 1519 (1832)
+|-||||||++|.+|++-..++.... -.-....||..|||||+||||.|+++.+..++..+ .++...+.||.+
T Consensus 213 IAfTGSGKTlvFvLP~imf~LeqE~~-lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~ 291 (610)
T KOG0341|consen 213 IAFTGSGKTLVFVLPVIMFALEQEMM-LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVP 291 (610)
T ss_pred EEeecCCceEEEeHHHHHHHHHHHhc-CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCcc
Confidence 99999999999999998665542211 11234679999999999999999999998875433 478889999999
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 1599 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~ 1599 (1832)
..++...++.|.+|+|+|||+|.++|....+.+.-|.|+++||||+|+++||.+.+..|++++.
T Consensus 292 v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK---------------- 355 (610)
T KOG0341|consen 292 VREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK---------------- 355 (610)
T ss_pred HHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEE
Q psy6409 1600 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVI 1679 (1832)
Q Consensus 1600 l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vI 1679 (1832)
..+|+++||||||..++.+++.-+..|+.++++..+..+.++.|-+.++....|..+|++.|.+. ..|+|
T Consensus 356 ---------~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT-~PpVL 425 (610)
T KOG0341|consen 356 ---------GQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT-SPPVL 425 (610)
T ss_pred ---------hhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC-CCceE
Confidence 45899999999999999999999999999999999999988888888899999999999988754 57899
Q ss_pred EEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHH
Q psy6409 1680 IFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759 (1832)
Q Consensus 1680 VFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~y 1759 (1832)
|||..+..++.+.++|--.|..+..+|||..|++|...++.|+.|+-+||||||+++.|+|+|++.+|||||||..+++|
T Consensus 426 IFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENY 505 (610)
T KOG0341|consen 426 IFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENY 505 (610)
T ss_pred EEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1760 THRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1760 iQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
+|||||+||.|+.|.|.+|++.. +...+-+|+.++.+.. +.+||.|...
T Consensus 506 VHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~Eak-Q~vP~~L~~L 555 (610)
T KOG0341|consen 506 VHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAK-QEVPPVLAEL 555 (610)
T ss_pred HHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhh-ccCCHHHHHh
Confidence 99999999999999999999986 6789999999999986 8999998643
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-62 Score=621.69 Aligned_cols=363 Identities=44% Similarity=0.701 Sum_probs=338.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
..|++++|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||++|+||+++.|.... .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 7899999999999999999999999999999999999999999999999999999999999875310 011112
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+|||+||||||.|+++.+..++... ++++++++||.+...|...+..+++|||||||||+|++.++.+.++.+.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999999999999899999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|+++||.+++..|+..+|. .+|+++||||+|..+..+++.++.+|..+.+.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~-------------------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~ 236 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPP-------------------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVS 236 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCc-------------------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEc
Confidence 99999999999999999999972 48999999999999999999999999988888
Q ss_pred ccCC--CCcceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 967 SVGK--PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 967 ~~~~--~~~~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
.... ....+.|.++.+.... |...|..++......++||||+++..|+.|+..|...|+.+..+||+|+|.+|..++
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 5544 7788999999998766 999999999988777899999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHhcC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~ 1122 (1832)
+.|++|.++||||||+++||||||+|++|||||+|.+.++|+||+|||||+|..|.+++|+++. |...+..+...+...
T Consensus 317 ~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 317 EKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 888888888875443
No 14
>KOG0339|consensus
Probab=100.00 E-value=1.7e-62 Score=563.55 Aligned_cols=396 Identities=42% Similarity=0.687 Sum_probs=371.8
Q ss_pred ChhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecC
Q psy6409 695 TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 774 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apT 774 (1832)
+..++..|+..+...++..+++.+.|...|.|+.+|+.+|+.+.|+.++.+..|.+|||||.+++|.++.|+|||.+|.|
T Consensus 190 e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAkt 269 (731)
T KOG0339|consen 190 EHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKT 269 (731)
T ss_pred ChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeec
Confidence 34567778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhc
Q psy6409 775 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854 (1832)
Q Consensus 775 GSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~ 854 (1832)
|||||.+|+.|++.+|...+.+. ...||.+||+||||+||.||+.++++|++.+|++++++|||.+..+|...|..
T Consensus 270 gSgktaAfi~pm~~himdq~eL~----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~ 345 (731)
T KOG0339|consen 270 GSGKTAAFIWPMIVHIMDQPELK----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE 345 (731)
T ss_pred cCcchhHHHHHHHHHhcchhhhc----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc
Confidence 99999999999999998766543 36799999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccc
Q psy6409 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 934 (1832)
Q Consensus 855 ~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~ 934 (1832)
++.|||||||||++++.-+.+++.+++||||||||+|+++||+++++.|..++. +
T Consensus 346 g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir-------------------------p 400 (731)
T KOG0339|consen 346 GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR-------------------------P 400 (731)
T ss_pred CCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC-------------------------C
Confidence 999999999999999999999999999999999999999999999999998874 4
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHc-CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNR-GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~ 1012 (1832)
.+|+++||||++..++.+++.+|.+|+.+..+..+..+..|+|.+.++. +..|+..|+.-|-. ...+++||||..+..
T Consensus 401 drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 401 DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKAD 480 (731)
T ss_pred cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCC
Confidence 5899999999999999999999999999999999999999999998885 45677777766554 356789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccc
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaG 1092 (1832)
++.++..|...++++..+||+|.|.+|.+++..|+.+...||||||+++||+|||++..|||||+..+++.|+||+||+|
T Consensus 481 ~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 481 AEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred HHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1093 R~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|+|..|.+++++|+.|..+.-.|.+.|
T Consensus 561 Rag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 561 RAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred cccccceeeEEechhhHHHhhHHHHHH
Confidence 999999999999999988877777654
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-61 Score=618.14 Aligned_cols=396 Identities=47% Similarity=0.759 Sum_probs=359.3
Q ss_pred ChhhhhhccHHHHHHHHhhcccee-cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEec
Q psy6409 695 TEKSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~ap 773 (1832)
....+..|++++++.+++..+|.+ .|..+|.|+.+|++++||+.++++|.+.||.+|||||.++||.+++|+|+|++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~Ap 175 (545)
T PTZ00110 96 EHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAE 175 (545)
T ss_pred CChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeC
Confidence 345677889999999999998886 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh
Q psy6409 774 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853 (1832)
Q Consensus 774 TGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~ 853 (1832)
||||||++|+||++.++...+. .....+|.+|||+||||||.|+...+.+++...++++.+++||.....+...+.
T Consensus 176 TGSGKTlaylLP~l~~i~~~~~----~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~ 251 (545)
T PTZ00110 176 TGSGKTLAFLLPAIVHINAQPL----LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR 251 (545)
T ss_pred CCChHHHHHHHHHHHHHHhccc----ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH
Confidence 9999999999999988754322 123458999999999999999999999999999999999999999988888888
Q ss_pred cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcccc
Q psy6409 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933 (1832)
Q Consensus 854 ~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~ 933 (1832)
.+++|+|+||++|++++.++...+..+++|||||||+|++++|.+++..|+..++
T Consensus 252 ~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------- 306 (545)
T PTZ00110 252 RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------- 306 (545)
T ss_pred cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC-------------------------
Confidence 9999999999999999999888999999999999999999999999999998774
Q ss_pred ccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccC-CCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEEcc
Q psy6409 934 KYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQ 1009 (1832)
Q Consensus 934 ~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~-~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s 1009 (1832)
..+|+++||||+|..+..++..++. .|..+.++... .....+.+.+..+....|...|..++... ...++||||++
T Consensus 307 ~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t 386 (545)
T PTZ00110 307 PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVET 386 (545)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecC
Confidence 2479999999999999999998886 57777776654 34466888888888888888888888764 46799999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhc
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~G 1089 (1832)
++.|+.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||+|++|||||+|.++++|+||+|
T Consensus 387 ~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG 466 (545)
T PTZ00110 387 KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIG 466 (545)
T ss_pred hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1090 RaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||||+|..|.|++|+++++......|.+.+
T Consensus 467 RtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 467 RTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred ccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 999999999999999999877766666554
No 16
>KOG0336|consensus
Probab=100.00 E-value=1.6e-62 Score=550.42 Aligned_cols=408 Identities=43% Similarity=0.693 Sum_probs=369.1
Q ss_pred hhhcccCHHHHHHHH-hcccceecC------CCCCCCcCCcccC-CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcE
Q psy6409 1372 KSLDEMTERDWRIFR-EDYSITIKG------GKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 1443 (1832)
Q Consensus 1372 ~~~~~~~~~~~~~~~-~~~~i~~~~------~~~p~p~~~~~e~-~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dv 1443 (1832)
+....|+......++ +.+.|.+.. ..+|+|..+|++. +-.+++++.+++.||.+|||||.||||.+++|.|+
T Consensus 181 ~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dl 260 (629)
T KOG0336|consen 181 NETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDL 260 (629)
T ss_pred chhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcce
Confidence 445567766655554 566776542 3589999999885 78899999999999999999999999999999999
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
|++|.||+|||++|++|-+.++...|... ....+|.+|+++||++||.|+.-+..++. ..|.+.+|++||.+..++
T Consensus 261 iGVAQTgtgKtL~~L~pg~ihi~aqp~~~---~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eq 336 (629)
T KOG0336|consen 261 IGVAQTGTGKTLAFLLPGFIHIDAQPKRR---EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQ 336 (629)
T ss_pred EEEEecCCCcCHHHhccceeeeeccchhh---hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhH
Confidence 99999999999999999998887766543 35678999999999999999999998874 568899999999999999
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1524 ~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
...+..+.+|+|+||++|.++...+.+++..+.|||+||||+|+++||++++.+|+--+.
T Consensus 337 ie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR-------------------- 396 (629)
T KOG0336|consen 337 IEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR-------------------- 396 (629)
T ss_pred HHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC--------------------
Confidence 999999999999999999999999999999999999999999999999999999986553
Q ss_pred hccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCC-CcceEEEEEEcchhhHHHHHHHHHHh-CCCCcEEEE
Q psy6409 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIF 1681 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~-~~~i~q~~~~~~~~~k~~~l~~~l~~-~~~~~vIVF 1681 (1832)
+.+|+++.|||+|+.+..++..|+.+|..+++++.+.. ...+.|.+..-.+..|...+..++.. ....++|||
T Consensus 397 -----PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiF 471 (629)
T KOG0336|consen 397 -----PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIF 471 (629)
T ss_pred -----CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEE
Confidence 45899999999999999999999999999999987754 46788888777777888777776654 377899999
Q ss_pred ECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1682 VNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
|.++..|+.|...|.-.|+.+..+||+-+|.+|+..++.|++|+++||||||+++||+|+|+|.||+|||+|.+++.|+|
T Consensus 472 v~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVH 551 (629)
T KOG0336|consen 472 VSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVH 551 (629)
T ss_pred EechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1762 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1762 RiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
|+||+||+|..|.+++|++..|..++..|.+.|..++ +.||.+|...
T Consensus 552 RvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ae-QevPdeL~~m 598 (629)
T KOG0336|consen 552 RVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAE-QEVPDELVRM 598 (629)
T ss_pred HhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhh-hhCcHHHHHH
Confidence 9999999999999999999999999999999999997 8999999754
No 17
>KOG0334|consensus
Probab=100.00 E-value=1.8e-62 Score=615.91 Aligned_cols=396 Identities=44% Similarity=0.749 Sum_probs=368.8
Q ss_pred ChhhhhhccHHHHHHHHhhc-cceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEec
Q psy6409 695 TEKSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773 (1832)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~ap 773 (1832)
..+.+..|+..++..++... +|.++|..+|.|+.+|.+.|++..++..++++||.+|+|||.+|||+|++|+|||++|.
T Consensus 331 e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvak 410 (997)
T KOG0334|consen 331 EVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAK 410 (997)
T ss_pred cchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeec
Confidence 35678889999999999877 59999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh
Q psy6409 774 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853 (1832)
Q Consensus 774 TGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~ 853 (1832)
||||||++|+||++.++...+... ...||.+|||+|||+||.||.+.+++|+..++++++++|||....++...++
T Consensus 411 TgSGKT~af~LPmirhi~dQr~~~----~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelk 486 (997)
T KOG0334|consen 411 TGSGKTLAFLLPMIRHIKDQRPLE----EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELK 486 (997)
T ss_pred cCCccchhhhcchhhhhhcCCChh----hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHh
Confidence 999999999999999887665543 3569999999999999999999999999999999999999999999999999
Q ss_pred cCCceeecCHHHHHHHHHcc---ccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhc
Q psy6409 854 LGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 930 (1832)
Q Consensus 854 ~~~~IlV~TP~rL~d~l~~~---~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~ 930 (1832)
+++.|+|+|||+++|++... ..++..+.|||+||||+|+++||.|++..|+..++
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr---------------------- 544 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR---------------------- 544 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc----------------------
Confidence 99999999999999998543 34677778999999999999999999999998874
Q ss_pred cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcC-CCCCEEEEEc
Q psy6409 931 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRG-VKKPVIIFVN 1008 (1832)
Q Consensus 931 ~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~-~~~~vIVFv~ 1008 (1832)
..+|+++||||+|..++.++...+..|+.+.++........+.|.+.++. +..|+..|+++|... ...++||||.
T Consensus 545 ---pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 ---PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred ---hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 45899999999999999999999999999999988888899999999998 899999999999753 5789999999
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHh
Q psy6409 1009 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~ 1088 (1832)
....|+.+.+.|...|+.+..+||+.++.+|..+++.|++|.+++||||+++++|||++++.+|||||+|...++|+||.
T Consensus 622 ~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1089 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|||||+|+.|.|++|+++++..+...|.+.+
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999999999999999998876666665544
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.6e-60 Score=610.09 Aligned_cols=391 Identities=35% Similarity=0.647 Sum_probs=356.5
Q ss_pred hccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHH
Q psy6409 701 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL 780 (1832)
Q Consensus 701 ~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTl 780 (1832)
.|+..+++.|++.++|.++|...|.|+.+|++++|++.++++|.+.||..|||+|.+|||.++.|+|+|++||||||||+
T Consensus 94 ~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTl 173 (518)
T PLN00206 94 GLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTA 173 (518)
T ss_pred cCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceee
Q psy6409 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 860 (1832)
Q Consensus 781 a~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV 860 (1832)
+|++|++.++...... ......++++|||+||||||.|+.+.++.++..+++++..++||.....+...+..+++|+|
T Consensus 174 ayllPil~~l~~~~~~--~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV 251 (518)
T PLN00206 174 SFLVPIISRCCTIRSG--HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIV 251 (518)
T ss_pred HHHHHHHHHHHhhccc--cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEE
Confidence 9999999887542211 01123678999999999999999999999999899999999999998888888888999999
Q ss_pred cCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEE
Q psy6409 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940 (1832)
Q Consensus 861 ~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~ 940 (1832)
+|||+|.+++.++.+.++++.+|||||||+|+++||++++..|+..++ ..|+++
T Consensus 252 ~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~--------------------------~~q~l~ 305 (518)
T PLN00206 252 GTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS--------------------------QPQVLL 305 (518)
T ss_pred ECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC--------------------------CCcEEE
Confidence 999999999999888999999999999999999999999999987763 268999
Q ss_pred EEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHH
Q psy6409 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAK 1018 (1832)
Q Consensus 941 ~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~ 1018 (1832)
||||+|+.++.++..++.++..+.++....+...+.+.+..+....+...|.+++... ..+++||||+++..|+.++.
T Consensus 306 ~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 306 FSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred EEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHH
Confidence 9999999999999999999999988877777778888888888888888888888753 34689999999999999999
Q ss_pred HHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC
Q psy6409 1019 GLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1019 ~L~~-~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~ 1097 (1832)
.|.. .++.+..+||+|++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.++.+|+||+|||||+|..
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 9975 589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCCchHHHHHHHHH
Q psy6409 1098 GLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1098 G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|.|++|++.++..++..+.+.+
T Consensus 466 G~ai~f~~~~~~~~~~~l~~~l 487 (518)
T PLN00206 466 GTAIVFVNEEDRNLFPELVALL 487 (518)
T ss_pred eEEEEEEchhHHHHHHHHHHHH
Confidence 9999999998866666555543
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.1e-60 Score=608.64 Aligned_cols=411 Identities=46% Similarity=0.747 Sum_probs=375.2
Q ss_pred CChhhhcccCHHHHHHHHhccccee-cCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEc
Q psy6409 1369 WTEKSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 1447 (1832)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~A 1447 (1832)
.....+..|+.+++..++....|.+ .|..+|.|+.+|++++|++.++++|.++||..|||+|.++||.+++|+|+|++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~A 174 (545)
T PTZ00110 95 KEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIA 174 (545)
T ss_pred cCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3445677899999999999998886 788999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh
Q psy6409 1448 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 1527 (1832)
Q Consensus 1448 pTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l 1527 (1832)
|||||||++|++|++.++...+.. ....++.+|||+||+|||.|+...+.+++...++++++++||.+...+...+
T Consensus 175 pTGSGKTlaylLP~l~~i~~~~~~----~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 175 ETGSGKTLAFLLPAIVHINAQPLL----RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred CCCChHHHHHHHHHHHHHHhcccc----cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 999999999999999887654321 2345889999999999999999999999998999999999999998888888
Q ss_pred hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccc
Q psy6409 1528 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 1607 (1832)
Q Consensus 1528 ~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 1607 (1832)
..+++|+|+||++|.+++..+...+.++.+|||||||+|++++|.+++..|+..++
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------ 306 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------ 306 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------
Confidence 89999999999999999999888999999999999999999999999999998774
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcC-CCcEEEEcccC-CCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEEC
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVN 1683 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~-~p~~v~i~~~~-~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~ 1683 (1832)
..+|+++||||+|..+..++..++. .|..+.++... .....+.+.+..+....|...|..++... ...++||||+
T Consensus 307 -~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~ 385 (545)
T PTZ00110 307 -PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVE 385 (545)
T ss_pred -CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEec
Confidence 3479999999999999999988876 57777776554 33456788888888888888888888764 4679999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
++..|+.|+..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||+|++|||||+|.++++|+||+
T Consensus 386 t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRi 465 (545)
T PTZ00110 386 TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRI 465 (545)
T ss_pred ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCC
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1809 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h 1809 (1832)
|||||+|+.|.|++|++++|...+.++.+.+.... +.+|++|.+.
T Consensus 466 GRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~-q~vp~~l~~~ 510 (545)
T PTZ00110 466 GRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK-QPVPPELEKL 510 (545)
T ss_pred cccccCCCCceEEEEECcchHHHHHHHHHHHHHcc-CCCCHHHHHH
Confidence 99999999999999999999999999999999996 8999999876
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.9e-60 Score=604.99 Aligned_cols=415 Identities=34% Similarity=0.618 Sum_probs=377.6
Q ss_pred CCChhhhc-ccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEE
Q psy6409 1368 HWTEKSLD-EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446 (1832)
Q Consensus 1368 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ 1446 (1832)
++.+..+. .|+.+++..+++.++|.+.|...|+|+.+|.+++|++.++++|...||..|||+|.++||.++.|+|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ 164 (518)
T PLN00206 85 YVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVS 164 (518)
T ss_pred CccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 33334443 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH
Q psy6409 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526 (1832)
Q Consensus 1447 ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~ 1526 (1832)
||||||||++|++|++.++...... ......++++|||+||+|||.|+++.++.++..++++++.++||.....+...
T Consensus 165 ApTGSGKTlayllPil~~l~~~~~~--~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~ 242 (518)
T PLN00206 165 ADTGSGKTASFLVPIISRCCTIRSG--HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR 242 (518)
T ss_pred ecCCCCccHHHHHHHHHHHHhhccc--cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHH
Confidence 9999999999999999877542210 01123678999999999999999999999998889999999999998888888
Q ss_pred hhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcc
Q psy6409 1527 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS 1606 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~ 1606 (1832)
+..+++|+|+||++|.+++..+.+.+.++.+|||||||+|+++||.+.+..|+..++
T Consensus 243 l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~----------------------- 299 (518)
T PLN00206 243 IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS----------------------- 299 (518)
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-----------------------
Confidence 888999999999999999999888999999999999999999999999999887664
Q ss_pred ccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECc
Q psy6409 1607 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQ 1684 (1832)
Q Consensus 1607 ~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s 1684 (1832)
.+|+++||||+++.++.++..++.++..+.++....+...+.+.+..+....+...+.+++... ...++||||++
T Consensus 300 ---~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 300 ---QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred ---CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCC
Confidence 2589999999999999999999999998888877777778888888888888888888888754 34689999999
Q ss_pred hhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1685 KKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
+..|+.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+|++|||||+|.++.+|+||+
T Consensus 377 ~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRi 456 (518)
T PLN00206 377 RLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456 (518)
T ss_pred chhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhc
Confidence 9999999999975 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCC
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPD 1811 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~ 1811 (1832)
|||||+|..|.|++|++++|...+.++.+.+...+ +.+|++|.+++.
T Consensus 457 GRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~-~~vp~~l~~~~~ 503 (518)
T PLN00206 457 GRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG-AAIPRELANSRY 503 (518)
T ss_pred cccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC-CCCCHHHHhChh
Confidence 99999999999999999999999999999999986 899999999984
No 21
>KOG0328|consensus
Probab=100.00 E-value=3.1e-61 Score=518.83 Aligned_cols=366 Identities=31% Similarity=0.551 Sum_probs=344.1
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
..-+++.+|+++||.+++++++...||++|+.||+.|||.++.|+|+|+.|..|+|||.+|.+-+++.+. .
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d---------~ 91 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLD---------I 91 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecc---------c
Confidence 4456788999999999999999999999999999999999999999999999999999999998886542 2
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
.....++|||.||||||.|+.+.+..++.++++.+..++||.+..+....+..|.+++.+|||++++++.++.+....++
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 34567899999999999999999999999999999999999999999988989999999999999999999999999999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+||+||||.|++.||..++-.|++++| +..|++++|||+|..+......|+.+|+
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp-------------------------~~~Qvv~~SATlp~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLP-------------------------PGAQVVLVSATLPHEILEMTEKFMTDPV 226 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCC-------------------------CCceEEEEeccCcHHHHHHHHHhcCCce
Confidence 999999999999999999999999997 3479999999999999999999999999
Q ss_pred EEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+.+.....+...+.|++..+.. +.|+..|.++.....-.+++|||||+..++.|.+.|+..++.+..+||+|++++|.
T Consensus 227 rilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd 306 (400)
T KOG0328|consen 227 RILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERD 306 (400)
T ss_pred eEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHH
Confidence 99999988888889998887755 45999999988877778899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.++..|++|+.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.+|.|+..+|...+..++++..
T Consensus 307 ~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 307 KIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred HHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred c
Q psy6409 1121 S 1121 (1832)
Q Consensus 1121 ~ 1121 (1832)
.
T Consensus 387 t 387 (400)
T KOG0328|consen 387 T 387 (400)
T ss_pred h
Confidence 3
No 22
>KOG0335|consensus
Probab=100.00 E-value=5.6e-61 Score=569.12 Aligned_cols=383 Identities=42% Similarity=0.717 Sum_probs=351.0
Q ss_pred ceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchh
Q psy6409 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795 (1832)
Q Consensus 716 i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~ 795 (1832)
+.+.|.++|.++..|++..+.+.+..+++..||..|||||+.+||.+..|+|+++||+||||||.+|++|++.++.....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhccccC-CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc
Q psy6409 796 IARMEDAD-QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 874 (1832)
Q Consensus 796 ~~~~~~~~-~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~ 874 (1832)
........ ..|.+|||+||||||.|++.+.+++....+++++.+|||.+...+...+..+|+|+|+|||+|.+++..+.
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 33322222 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH
Q psy6409 875 LVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 953 (1832)
Q Consensus 875 ~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~ 953 (1832)
+.|+.|+||||||||+|+| ++|+|+++.|+.++... ....+|++|||||+|..+..++
T Consensus 222 i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~---------------------~~~~~qt~mFSAtfp~~iq~l~ 280 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMP---------------------PKNNRQTLLFSATFPKEIQRLA 280 (482)
T ss_pred eehhhCcEEEecchHHhhhhccccccHHHHhcccCCC---------------------CccceeEEEEeccCChhhhhhH
Confidence 9999999999999999999 99999999999887421 1346899999999999999999
Q ss_pred HHhcCC-CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCC----CC-----CEEEEEcccchHHHHHHHHHHc
Q psy6409 954 RSYLRR-PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV----KK-----PVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 954 ~~~l~~-p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~----~~-----~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
..|+.+ .+++.++..+....++.|.+.++.+..|...|+++|.... .. .++|||.+++.|..++.+|...
T Consensus 281 ~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~ 360 (482)
T KOG0335|consen 281 ADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN 360 (482)
T ss_pred HHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC
Confidence 999886 7888999999999999999999999999999999997533 22 6999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
++++..+||..++.+|...++.|++|.+.|||||+|++||||||+|.||||||+|.++.+|+||||||||+|..|.++.|
T Consensus 361 ~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 361 GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l 1119 (1832)
+...+......|.+.|
T Consensus 441 ~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 441 FNEKNQNIAKALVEIL 456 (482)
T ss_pred eccccchhHHHHHHHH
Confidence 9977755555555544
No 23
>KOG0338|consensus
Probab=100.00 E-value=2.3e-61 Score=555.72 Aligned_cols=361 Identities=39% Similarity=0.597 Sum_probs=334.4
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|.+++|+..+++++..+||..|||||.++||.++.|+|++.||.||||||.||++|+|..+.-.|. .....
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------~~~~T 253 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------KVAAT 253 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------cCcce
Confidence 458999999999999999999999999999999999999999999999999999999999998876564 24567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llVi 1560 (1832)
+||||+||||||.|++...++++.+..+.++.++||.+...|...|+..+||||+|||+|++++.+.. +.+.++.++|+
T Consensus 254 RVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 254 RVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999998864 78999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++.||.+++..|+..+| ..+|+++|||||+..+..++...|+.|+.+.+
T Consensus 334 DEADRMLeegFademnEii~lcp-------------------------k~RQTmLFSATMteeVkdL~slSL~kPvrifv 388 (691)
T KOG0338|consen 334 DEADRMLEEGFADEMNEIIRLCP-------------------------KNRQTMLFSATMTEEVKDLASLSLNKPVRIFV 388 (691)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-------------------------ccccceeehhhhHHHHHHHHHhhcCCCeEEEe
Confidence 99999999999999999999997 56899999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEE-c--chhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYI-L--SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~-~--~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
.+.......+.|-+.. . .+..+...|..++.......+|||+.|++.|..+--.|--+|+.++.+||.++|.+|...
T Consensus 389 d~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 389 DPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred CCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 8877777666665432 2 344566677788887888899999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
++.|++++++||||||+++||+||+.|.+||||+||.++..|+||+||++|+|..|.+|+|+.++|..+++.+...
T Consensus 469 L~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 469 LEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888777654
No 24
>KOG0339|consensus
Probab=100.00 E-value=4.7e-60 Score=543.40 Aligned_cols=412 Identities=41% Similarity=0.666 Sum_probs=386.4
Q ss_pred CChhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcC
Q psy6409 1369 WTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448 (1832)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~Ap 1448 (1832)
-...++..|+..+...++..+++.+.|...|.|+.+|.+.++...++.++++..|.+|||+|.+++|..+.|+||+.+|.
T Consensus 189 ~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAk 268 (731)
T KOG0339|consen 189 EEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAK 268 (731)
T ss_pred cChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheee
Confidence 34456677777777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~ 1528 (1832)
||||||.||+.|++.++...|.+. ...+|..||+|||++||.|++.++++|++..|+++++++||.+.++|...|.
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~----~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk 344 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELK----PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK 344 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhc----CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh
Confidence 999999999999999998877654 3689999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcccc
Q psy6409 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 1608 (1832)
.++.|||||||||++++.-+.+++.++.||||||||+|+++||.+++..|...+.
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------- 399 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------- 399 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC-------------------------
Confidence 9999999999999999999999999999999999999999999999999998885
Q ss_pred CcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHh-CCCCcEEEEECchh
Q psy6409 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNR-GVKKPVIIFVNQKK 1686 (1832)
Q Consensus 1609 ~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~-~~~~~vIVFv~s~~ 1686 (1832)
+.+|+++||||++..++.+++.+|.+|+.+..+..+..+..|.|.+.++.. ..|..+|+.-|-. ...+++||||..+.
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 558999999999999999999999999999999999999999999988865 5566777665544 35679999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccc
Q psy6409 1687 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766 (1832)
Q Consensus 1687 ~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRa 1766 (1832)
.++.++..|.-.+++|..+||+|.|.+|.+++..|+.+...||||||++++|+|||++..|||||+-.+++.|+||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCC
Q psy6409 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810 (1832)
Q Consensus 1767 GR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~ 1810 (1832)
||+|.+|++++|+++.|..+.-.|.+.|.... ++||++|.+..
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~ag-QnVP~~l~dla 602 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG-QNVPDELMDLA 602 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhcc-ccCChHHHHHH
Confidence 99999999999999999999999999999886 89999998763
No 25
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-59 Score=590.73 Aligned_cols=363 Identities=44% Similarity=0.702 Sum_probs=337.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|.+++|++.++++|.+.||..|||||.++||.++.|+|+++.|+||||||+||++|++..+...+ .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 6799999999999999999999999999999999999999999999999999999999999875320 011112
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|||+||||||.|+++.+..++... +++++.++||.+...+...+..+++||||||||+++++.++.+.+.++.++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999999998888899999999999999999999999999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||.+++..|+..+| ..+|+++||||+|..+..+.+.++.+|..+.+.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p-------------------------~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~ 236 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALP-------------------------PDRQTLLFSATMPDDIRELARRYLNDPVEIEVS 236 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCC-------------------------cccEEEEEecCCCHHHHHHHHHHccCCcEEEEc
Confidence 9999999999999999999997 247999999999999999999999999988888
Q ss_pred ccCC--CCcceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 1642 SVGK--PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1642 ~~~~--~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il 1718 (1832)
.... ....+.|.+..+.... |...|..++......++||||+|+..|+.|+..|...|+.+..+||+|+|.+|..++
T Consensus 237 ~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 237 VEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred cccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 5554 7788999999998765 999999999988777899999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcC
Q psy6409 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1719 ~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~ 1797 (1832)
+.|++|+++||||||+++||||||+|++|||||+|.+.++|+||+|||||+|..|.|++|+++. +...+..+...+...
T Consensus 317 ~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 317 EKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred HHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986 888888888876443
No 26
>KOG0328|consensus
Probab=100.00 E-value=2.8e-59 Score=503.76 Aligned_cols=374 Identities=30% Similarity=0.549 Sum_probs=348.6
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1398 ~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
--.++.+|++++|.+++++.+..+||..|+.+|..|++.++.|+|||+.|..|+|||.+|.+.+|+.+.. .
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~---------~ 92 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI---------S 92 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---------c
Confidence 3456789999999999999999999999999999999999999999999999999999998888754422 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
.....+|||.||||||.|+.+.+..++.++++.+..+.||.+..+....+..|.+++.+|||+++++++++.+....+.+
T Consensus 93 ~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 93 VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 34578999999999999999999999999999999999999988888888889999999999999999999999999999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
+|+||||.|++.||..++-.|+.++| +..|++++|||+|..+.+....|+.+|..
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp-------------------------~~~Qvv~~SATlp~eilemt~kfmtdpvr 227 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLP-------------------------PGAQVVLVSATLPHEILEMTEKFMTDPVR 227 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCC-------------------------CCceEEEEeccCcHHHHHHHHHhcCCcee
Confidence 99999999999999999999999998 45799999999999999999999999999
Q ss_pred EEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+.+...+.+...++|++..+.. ..|...|+++.....-.+++|||||++.+++|.+.|+..++.|..+||+|.+++|..
T Consensus 228 ilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~ 307 (400)
T KOG0328|consen 228 ILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDK 307 (400)
T ss_pred EEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHH
Confidence 9999999898889998877655 459999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
++..|++|+.+|||+||+.+||+|+|.|++|||||+|.+.+.|+||+||.||+|.+|.|+.|+..+|...+.++.+++..
T Consensus 308 im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 308 IMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred HHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCChhh
Q psy6409 1797 SPVSTCPPEL 1806 (1832)
Q Consensus 1797 ~~~~~~~~~L 1806 (1832)
. +..+|-.+
T Consensus 388 ~-i~emp~nv 396 (400)
T KOG0328|consen 388 Q-IDEMPMNV 396 (400)
T ss_pred h-cccccchh
Confidence 5 35555543
No 27
>KOG0335|consensus
Probab=100.00 E-value=3.9e-59 Score=553.47 Aligned_cols=398 Identities=41% Similarity=0.694 Sum_probs=367.9
Q ss_pred ccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhC
Q psy6409 1389 YSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468 (1832)
Q Consensus 1389 ~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~ 1468 (1832)
..+.+.|..+|.++..|.+..+...+..+++..||..|||+|+.+||.+..|+|+++||+||||||.||++|++.++...
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred chhhccc-ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc
Q psy6409 1469 PKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 1547 (1832)
Q Consensus 1469 p~~~~~~-~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~ 1547 (1832)
....... .....|.+|||+||||||.|++.+.+++....+++++.++||.+...+...+..+|+|+|||||+|.+++..
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 3322222 222479999999999999999999999998899999999999998888888899999999999999999999
Q ss_pred cccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH
Q psy6409 1548 RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626 (1832)
Q Consensus 1548 ~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~ 1626 (1832)
+.+.+++|.+||+||||+|++ ++|+|+++.|+....... ...+|++|||||+|..+..
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---------------------~~~~qt~mFSAtfp~~iq~ 278 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---------------------KNNRQTLLFSATFPKEIQR 278 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---------------------ccceeEEEEeccCChhhhh
Confidence 999999999999999999999 999999999998775221 2568999999999999999
Q ss_pred HHHHhcCC-CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCC----CC-----cEEEEECchhHHHHHHHHHH
Q psy6409 1627 LARSYLRR-PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV----KK-----PVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1627 ~~~~~l~~-p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~----~~-----~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
++..++.+ ...+.++..+....++.|.+.++.+..|...|+++|.... .. .++|||++++.|..++..|.
T Consensus 279 l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 279 LAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred hHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 99888886 7788889999999999999999999999999999997543 22 79999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
..++++..+||..++.+|...++.|++|++.|||||++++||+|||+|.+|||||+|.++.+|+||||||||.|+.|.++
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHHHHHhhcCCCCCCChhhcC
Q psy6409 1777 SFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808 (1832)
Q Consensus 1777 ~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~ 1808 (1832)
.|+...+....+.|.+.+.+++ +.+|+||..
T Consensus 439 sf~n~~~~~i~~~L~~~l~ea~-q~vP~wl~~ 469 (482)
T KOG0335|consen 439 SFFNEKNQNIAKALVEILTEAN-QEVPQWLSE 469 (482)
T ss_pred EEeccccchhHHHHHHHHHHhc-ccCcHHHHh
Confidence 9999999999999999999997 899999988
No 28
>KOG0340|consensus
Probab=100.00 E-value=2.7e-59 Score=520.18 Aligned_cols=363 Identities=34% Similarity=0.517 Sum_probs=326.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
....|+.+||++|+.+.|+.+|+++|||||..+||.|+.|+|+|+||.||||||++|.||||+.+... ..|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed---------P~g 75 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED---------PYG 75 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC---------CCc
Confidence 35689999999999999999999999999999999999999999999999999999999999987653 357
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc----ccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~----~~~l~~~~ 881 (1832)
..++|+.||||||.|+.+.|..+++.+++++..++||++.-.|...|...+|+||+|||++.+++... ...++++.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 89999999999999999999999999999999999999999998999999999999999999999775 24688999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
++||||||+|++..|...++.+...+|. .+|+++||||+.+.+..+...-...+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP~-------------------------~RQtLlfSATitd~i~ql~~~~i~k~~ 210 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLPK-------------------------PRQTLLFSATITDTIKQLFGCPITKSI 210 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCCC-------------------------ccceEEEEeehhhHHHHhhcCCccccc
Confidence 9999999999999999999999998872 379999999998777654433333322
Q ss_pred --EEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 962 --TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 962 --~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
.+...+....+..+.|.+..++...+...|..+|... ..+.++||+|+..+|+.|+..|..+++.+..+||.|+|
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q 290 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQ 290 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchH
Confidence 2222233455677888899999999999999988753 35689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
.+|...+.+|+++.++||||||+++||+|||.|.+|||||.|.++.+|+||+||++|+|..|.+++|+++.|..++..++
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcC
Q psy6409 1117 QMMISS 1122 (1832)
Q Consensus 1117 ~~l~~~ 1122 (1832)
+-.+..
T Consensus 371 ~~igkK 376 (442)
T KOG0340|consen 371 EEIGKK 376 (442)
T ss_pred HHHhcc
Confidence 876543
No 29
>KOG0342|consensus
Probab=100.00 E-value=3.3e-59 Score=541.13 Aligned_cols=362 Identities=37% Similarity=0.583 Sum_probs=332.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...|++..|++..+++|+++||.++|++|+.+||.++.|+|+++.|-||||||+||+||+++.+...+... ..+.
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-----r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-----RNGT 155 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-----CCCe
Confidence 45678889999999999999999999999999999999999999999999999999999999987755432 3678
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 884 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lV 884 (1832)
.+||++||||||+|++.+++++.... ++.+..++||.........+..+++|+|||||+|+|++.+.. +....++++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 89999999999999999999999888 999999999999888888888899999999999999998754 4566778999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC-CcEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATV 963 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-p~~v 963 (1832)
+||||+++++||+.+++.|+..+| ..+|+++||||+|+.|++++...+.. |.++
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lp-------------------------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v 290 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILP-------------------------KQRQTLLFSATQPSKVKDLARGALKRDPVFV 290 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhcc-------------------------ccceeeEeeCCCcHHHHHHHHHhhcCCceEe
Confidence 999999999999999999999987 35899999999999999999988775 6666
Q ss_pred EEcccC--CCCcceEEEEEEcchhhHHHHHHHHHHcCCC-CCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 964 YIGSVG--KPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 964 ~~~~~~--~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~-~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
...+.+ .....+.|.+.++....++..+..+|+.+.. .++||||+|...+..+++.|....++|..+||+++|..|.
T Consensus 291 ~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 291 NVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 655443 3456788988888888888999999988766 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
.++..|+..+.-|||||||++||+|+|+|++||+||+|.++++|+||+|||||.|+.|.+++|+.+.|..|+++|++.
T Consensus 371 ~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 371 STFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred hHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999954
No 30
>KOG0326|consensus
Probab=100.00 E-value=3.6e-60 Score=518.06 Aligned_cols=359 Identities=34% Similarity=0.589 Sum_probs=338.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
.|+++.|..+++..+.+.||+.|+|||.++||.++.|+|+++-|..|+|||.+|.+|+|..|. .....-.+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---------~~~~~IQ~ 156 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---------PKKNVIQA 156 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC---------ccccceeE
Confidence 699999999999999999999999999999999999999999999999999999999998763 23456789
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
+|++||||||.|+...+..+++.+|+++...+||.+..+....+...+|++|+||||++|++..+...+++|.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|.|++..|.+.++.++..+| +.+|++++|||+|-.+..|...++.+|..+..-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP-------------------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~- 290 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLP-------------------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME- 290 (459)
T ss_pred hhhhchhhhhHHHHHHHhCC-------------------------ccceeeEEecccchhHHHHHHHhccCcceeehhh-
Confidence 99999999999999999997 3589999999999999999999999998886643
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 969 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
......+.|++.++.+.+|+..|..++....-.+.|||||+...++.+|+.+.++|+.+.++|+.|.|+.|..++..|++
T Consensus 291 eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 34456789999999999999999998888777889999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|.++.|||||++.||||+++|++|||||+|++.++|+||+||+||.|.-|.||.|++.+|...++.+++-+-.+
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999898888766444
No 31
>KOG0345|consensus
Probab=100.00 E-value=2.9e-58 Score=528.46 Aligned_cols=361 Identities=35% Similarity=0.553 Sum_probs=325.5
Q ss_pred cCcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 728 RNWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 728 ~~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.+|++++ |++++++++...||...||+|..+||.++.++||++-|+||||||+||++|++..|..... ......
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~----~~~~~~ 79 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREA----KTPPGQ 79 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhcc----CCCccc
Confidence 3677775 4599999999999999999999999999999999999999999999999999998843111 111123
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCC-CCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccC--Cce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLN--QCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~-~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~--~~~ 881 (1832)
.-+|||+||||||.||.+++..|... .++++.+++||.+..+....+. .+++|+|||||||.+++.+....++ .+.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 57999999999999999999999877 6889999999999888877765 4689999999999999998665555 999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+|||||||+++|+||...++.|++.+| +.+++-+||||+...+.+++...+++|.
T Consensus 160 ~LVLDEADrLldmgFe~~~n~ILs~LP-------------------------KQRRTGLFSATq~~~v~dL~raGLRNpv 214 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTILSFLP-------------------------KQRRTGLFSATQTQEVEDLARAGLRNPV 214 (567)
T ss_pred eEEecchHhHhcccHHHHHHHHHHhcc-------------------------cccccccccchhhHHHHHHHHhhccCce
Confidence 999999999999999999999999998 4578999999999999999999999999
Q ss_pred EEEEcccCC--CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHH
Q psy6409 962 TVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQE 1037 (1832)
Q Consensus 962 ~v~~~~~~~--~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~ 1037 (1832)
.+.+..... .+..+.-.+..|....|...|+++|......++|||..|...++..+..|... ...+..+||.|.+.
T Consensus 215 ~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~ 294 (567)
T KOG0345|consen 215 RVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQK 294 (567)
T ss_pred eeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcch
Confidence 999887765 55567777888999999999999999988899999999999999999988765 67899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
.|..+++.|++-.-.||+|||+++||||||+|++||+||+|.++..|+||+|||||+|..|.|++|+.+.+..++..+.-
T Consensus 295 ~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 295 ARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred hHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 99999999999888999999999999999999999999999999999999999999999999999999998888777654
No 32
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-57 Score=572.94 Aligned_cols=371 Identities=35% Similarity=0.534 Sum_probs=337.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
-.+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++.+...+... .....++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc--ccccCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999886533211 1123578
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++|||+||+|||.|+++.+..++..+++++..++||.....+...+..+++|+|+||++|.+++..+.+.++.+++||||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 99999999999999999999999999999999999999888888888889999999999999999888899999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..++..++.. ..++.++||||++..+..++..++.+|..+.+.
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~-----------------------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~ 221 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPA-----------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVE 221 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCc-----------------------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEc
Confidence 999999999999999999888621 235789999999999999999999999888887
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
........+.+.+.......|...|..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|
T Consensus 222 ~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F 301 (423)
T PRK04837 222 PEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEF 301 (423)
T ss_pred CCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHH
Confidence 66666667777777777788888899988877778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|+++|||||++++||||+|+|++|||||+|.+..+|+||+|||||+|..|.|++|+++++...+..+.+.+..+
T Consensus 302 ~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~ 377 (423)
T PRK04837 302 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHS 377 (423)
T ss_pred HcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988888887766544
No 33
>KOG0343|consensus
Probab=100.00 E-value=9.7e-58 Score=529.83 Aligned_cols=362 Identities=33% Similarity=0.522 Sum_probs=335.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.+..|++++|+..++++|++.+|..||.||+++||.++.|+|||+.|.||||||+||++|+|+.|.... +....|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-----Ws~~DG 141 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-----WSPTDG 141 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-----CCCCCC
Confidence 356799999999999999999999999999999999999999999999999999999999999886532 345678
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lV 884 (1832)
.-+|||.||||||.|+++++.+++...++.++.++||.........+. ..+|+|||||||+.+|... .+..+++.+||
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 899999999999999999999999999999999999999776665554 6999999999999999654 56888999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||+|+||||...+..|+..+| ..+|+++||||-...+..+++..+.+|.++.
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP-------------------------~~RQTLLFSATqt~svkdLaRLsL~dP~~vs 275 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKDPVYVS 275 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCC-------------------------hhheeeeeecccchhHHHHHHhhcCCCcEEE
Confidence 999999999999999999999997 3489999999999999999999999999988
Q ss_pred Ecc--cCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHH
Q psy6409 965 IGS--VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 965 ~~~--~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~ 1040 (1832)
+.. ....+.++.|.++.+....|+..|..++..+...++|||+.|.+.+..+++.+..+ |+++..+||.|+|..|.
T Consensus 276 vhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 276 VHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred EeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 863 24567789999999999999999999999999999999999999999999999876 88999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC-chHHHHHHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQM 1118 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~~~~~l~~~ 1118 (1832)
.++..|-....-||+|||+++||||+|+|++||++|+|.++.+|+||+||++|.+..|.+++++++++ ..++..|...
T Consensus 356 ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 356 EVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred HHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 6677777654
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.2e-56 Score=564.38 Aligned_cols=367 Identities=38% Similarity=0.656 Sum_probs=335.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|+++++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999987542211 011234689
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
|||+||++||.|+.+.+..++..+++++..++||.+...+...+..+++|+|+||++|++++....+.++++++||||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888888888999999999999999888889999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|+|++++|...+..++..++ ...|+++||||+++.+..++..++.+|..+.+...
T Consensus 159 h~ll~~~~~~~i~~il~~l~-------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 213 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLP-------------------------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213 (456)
T ss_pred HHHhccccHHHHHHHHHhCC-------------------------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc
Confidence 99999999999999988775 23689999999999999999999999988887766
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 969 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
......+.+.+..+....+...+..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|++
T Consensus 214 ~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 214 NTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred cccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 66667788888888888888888888877777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
|+++|||||+++++|||||+|++||||++|.+..+|+||+|||||+|..|.|++|++.+|..++..++..+..++
T Consensus 294 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred CCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776543
No 35
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.3e-56 Score=575.05 Aligned_cols=363 Identities=40% Similarity=0.646 Sum_probs=335.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
..+|.+++|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||++|++|++..+.. ...++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---------~~~~~ 75 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---------ELKAP 75 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------ccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999987632 23468
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
++|||+||++||.|++..+..+...+ ++.++.++||.+...+...+..+++|||+||++|++++.++.+.++++.+|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 99999999999999999999987665 79999999999988888888889999999999999999999889999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||+|++++|...+..|+..+| ...|+++||||+|..+..++..|+.+|..+.+
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp-------------------------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i 210 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIP-------------------------EGHQTALFSATMPEAIRRITRRFMKEPQEVRI 210 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCC-------------------------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEc
Confidence 99999999999999999998886 24789999999999999999999999988887
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.........+.+.+..+....|...|..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.
T Consensus 211 ~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~ 290 (629)
T PRK11634 211 QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 (629)
T ss_pred cCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHH
Confidence 76666666788888888888899999999987777899999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
|++|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++.|..++..+.+.+...+
T Consensus 291 Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred HhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999888998888765544
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-56 Score=570.78 Aligned_cols=370 Identities=39% Similarity=0.630 Sum_probs=334.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.+.||..|||||.++||.++.|+|+|++||||||||++|++|+++.+...+... .....+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~--~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA--DRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 4699999999999999999999999999999999999999999999999999999999999886432111 11223689
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lViD 886 (1832)
+|||+||+|||.|+++.+.+++..+++++..++||.....+...+..+++|||+||++|++++.+. .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999999999999999999988888788888999999999999998765 4678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..|+..++. ....|+++||||++..+..++..++.+|..+.+.
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~-----------------------~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPE-----------------------RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhccc-----------------------ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 99999999999999999988852 1246999999999999999999999999887776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
........+.+.++......+...|..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 224 ~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 224 TETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 65556667888888888888999999999877788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|+++|||||+++++|||||+|++|||||+|.+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 304 r~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 304 QKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred HcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888887766544
No 37
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.3e-56 Score=565.07 Aligned_cols=359 Identities=36% Similarity=0.576 Sum_probs=331.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|||+|.+|||.++.|+|+|++||||||||++|++|+++.+.. ...+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---------~~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---------KRFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---------ccCCce
Confidence 57999999999999999999999999999999999999999999999999999999999987632 123568
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+|||+||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+|||+|.+++.++.+.++++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 9999999999999999999987654 789999999999988888888899999999999999999988889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|...+..++..+| ..+|+++||||+|+.+..++..++.+|..+.+.
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~-------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAP-------------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCC-------------------------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999998886 246999999999999999999999999888876
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
... ....+.+.++.+....|...+..++....+.++||||+++..|+.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 210 ~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 210 STH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred cCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 544 3445888888888888999999999887788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
++|.++|||||+++++|||+|+|++|||||+|.+..+|+||+|||||+|..|.|++|++++|...+..+.+.+..
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888888776543
No 38
>KOG0326|consensus
Probab=100.00 E-value=7.4e-58 Score=499.89 Aligned_cols=368 Identities=33% Similarity=0.584 Sum_probs=344.7
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.|++..|.++++..+.+.||..|+|+|.++||.++.|+|+++-|..|+|||.||++|+|..+.. ....-.+
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---------~~~~IQ~ 156 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---------KKNVIQA 156 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc---------cccceeE
Confidence 5888999999999999999999999999999999999999999999999999999999987632 3456779
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
+|++||||||.|+...++.+++.+++.++..+||.+..+....+....+++|+|||+++++...+...+++|.++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|.|++..|.+.++.+++.+| +.+|++++|||+|-.+..+...++.+|..++.-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP-------------------------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~- 290 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLP-------------------------KERQILLYSATFPLTVKGFMDRHLKKPYEINLME- 290 (459)
T ss_pred hhhhchhhhhHHHHHHHhCC-------------------------ccceeeEEecccchhHHHHHHHhccCcceeehhh-
Confidence 99999999999999999998 5689999999999999999999999998876533
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
......+.|+|.++.+..|...|-.++.+..-...||||||...++.||+.+..+|+++.++|+.|-|+.|..++..|++
T Consensus 291 eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 291 ELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred hhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 34556788999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCP 1803 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1803 (1832)
|.++.|||||++.||||+++|++|||||+|++.++|+||+||+||+|..|.|+.+++-+|...++.+++.+-.. ++.+|
T Consensus 371 G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE-I~pip 449 (459)
T KOG0326|consen 371 GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE-IKPIP 449 (459)
T ss_pred cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc-cccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988544 67777
Q ss_pred hhhc
Q psy6409 1804 PELL 1807 (1832)
Q Consensus 1804 ~~L~ 1807 (1832)
+.+.
T Consensus 450 ~~iD 453 (459)
T KOG0326|consen 450 SNID 453 (459)
T ss_pred CcCC
Confidence 6544
No 39
>KOG0340|consensus
Probab=100.00 E-value=1.4e-56 Score=498.47 Aligned_cols=360 Identities=34% Similarity=0.538 Sum_probs=327.3
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
...+|..+||++|+.+.|+.+|+..|||+|..+||.++.|+|+|++|.||||||++|.+|+|+.+...| .|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP---------~g 75 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP---------YG 75 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC---------Cc
Confidence 346799999999999999999999999999999999999999999999999999999999998887654 58
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc----ccccCCce
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCT 1556 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~----~~~l~~v~ 1556 (1832)
-.++|+.||||||.|+.+.|..+++.+++++..++||.+.-.+...|...+||||+|||++.+++.++ ...++++.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 89999999999999999999999999999999999999999999999999999999999999999876 35688999
Q ss_pred eEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCc
Q psy6409 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636 (1832)
Q Consensus 1557 llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~ 1636 (1832)
++|+||||+|++..|.+.++.|.+.+| ..+|+++||||+.+.+..+.......+.
T Consensus 156 flVlDEADrvL~~~f~d~L~~i~e~lP-------------------------~~RQtLlfSATitd~i~ql~~~~i~k~~ 210 (442)
T KOG0340|consen 156 FLVLDEADRVLAGCFPDILEGIEECLP-------------------------KPRQTLLFSATITDTIKQLFGCPITKSI 210 (442)
T ss_pred eEEecchhhhhccchhhHHhhhhccCC-------------------------CccceEEEEeehhhHHHHhhcCCccccc
Confidence 999999999999999999999999887 3479999999999888765544444422
Q ss_pred E--EEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 1637 T--VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1711 (1832)
Q Consensus 1637 ~--v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~ 1711 (1832)
. +...+.......+.|.+..++...+..+|+.+|... ..+.++||+|+..+|+.|+..|..+++.+..+||.|+|
T Consensus 211 a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q 290 (442)
T KOG0340|consen 211 AFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQ 290 (442)
T ss_pred ceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchH
Confidence 2 222233445567888899999999999999998754 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1712 ~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
.+|...+.+|+++.++|||||||++||+|||.|++|||||+|.++.+|+||+||++|+|..|.+++|+++.|.+.+..++
T Consensus 291 ~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE 370 (442)
T KOG0340|consen 291 KERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIE 370 (442)
T ss_pred HHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHh
Q psy6409 1792 QMM 1794 (1832)
Q Consensus 1792 ~~l 1794 (1832)
+.+
T Consensus 371 ~~i 373 (442)
T KOG0340|consen 371 EEI 373 (442)
T ss_pred HHH
Confidence 765
No 40
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-55 Score=553.41 Aligned_cols=368 Identities=35% Similarity=0.538 Sum_probs=335.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|++..+...+... .....+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~--~~~~~~~~ 85 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE--DRKVNQPR 85 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 5799999999999999999999999999999999999999999999999999999999998886543211 11235689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+||++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.+..+.+.++.+|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999999999999999999988887777788899999999999999999889999999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||+|++++|...+..++..++.. ..++.++||||++..+..+...++.+|..+.+..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~-----------------------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~ 222 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPA-----------------------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP 222 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCc-----------------------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC
Confidence 99999999999999999888621 2357899999999999999999999998888776
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhh
Q psy6409 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK 1722 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~ 1722 (1832)
.......+.+.+.......|...+..++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 223 ~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~ 302 (423)
T PRK04837 223 EQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT 302 (423)
T ss_pred CCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH
Confidence 66666677777777777888888999988777789999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1723 GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1723 ~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+|+++|||||+++++|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++.+...+..+.+++.
T Consensus 303 ~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 303 RGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred cCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999888888876654
No 41
>KOG0342|consensus
Probab=100.00 E-value=2.5e-56 Score=517.21 Aligned_cols=364 Identities=37% Similarity=0.580 Sum_probs=333.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
...|++..|++..+++|+.+||...|++|..+|+.++.|+|+++.|.||||||+||++|+++++...+... .++.
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-----r~~~ 155 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-----RNGT 155 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-----CCCe
Confidence 34678889999999999999999999999999999999999999999999999999999999988765433 3678
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 1559 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llV 1559 (1832)
.||||+||||||.|++.+++++.... ++.+..++||.........+..+++|+|||||+|++++.+.. +...++.++|
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 89999999999999999999998887 899999999999888888888899999999999999998854 4566779999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATV 1638 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v 1638 (1832)
+||||+++++||+..++.|+..+| ..+|+++||||.+..+++++...+.. |..+
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lp-------------------------k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v 290 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILP-------------------------KQRQTLLFSATQPSKVKDLARGALKRDPVFV 290 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhcc-------------------------ccceeeEeeCCCcHHHHHHHHHhhcCCceEe
Confidence 999999999999999999999997 45899999999999999999988875 6666
Q ss_pred EEcccC--CCCcceEEEEEEcchhhHHHHHHHHHHhCCC-CcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 1639 YIGSVG--KPTERIEQIVYILSEQDKRKKLMEVLNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1639 ~i~~~~--~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~ 1715 (1832)
.+...+ .....+.|.+.+++...+...++.+|+++.. .++||||+|...+..++..|+...++|..+||+++|..|.
T Consensus 291 ~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT 370 (543)
T KOG0342|consen 291 NVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRT 370 (543)
T ss_pred ecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccc
Confidence 554433 3446788988888888888999999988765 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
.+...|++.+.-|||||||++||+|+|+|++||+||+|.+.++||||+|||||.|+.|.+++|+.+.+..|+..|+..+.
T Consensus 371 ~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~lpl 450 (543)
T KOG0342|consen 371 STFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKLPL 450 (543)
T ss_pred hHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985543
No 42
>KOG0343|consensus
Probab=100.00 E-value=3.3e-56 Score=517.10 Aligned_cols=360 Identities=33% Similarity=0.521 Sum_probs=332.7
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+..|.+++|+..+++.|++.+|..||.+|.++||.++.|+|||+.|.||||||+||++|+|..+.... +....|.
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-----Ws~~DGl 142 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-----WSPTDGL 142 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-----CCCCCCc
Confidence 44688999999999999999999999999999999999999999999999999999999999886643 4556889
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llVi 1560 (1832)
-+|||.||||||.|++..+.+++...++.+..++||.........+. +.+|+|||||+|+.++... .+...++.+||+
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 99999999999999999999999999999999999999877666654 6899999999999999765 467889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|+++||...+..|++.+| ..+|+++||||....+.++++..+.+|..+.+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP-------------------------~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCC-------------------------hhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 99999999999999999999998 55899999999999999999999999999888
Q ss_pred ccc--CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHH
Q psy6409 1641 GSV--GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1641 ~~~--~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~ 1716 (1832)
... ...+.++.|.|..+....|+..|..++..+...++|||++|++++..+++.|..+ |+++..+||.|+|..|..
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 732 4556788999999999999999999999999999999999999999999999986 788999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHHHHH
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQ 1792 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~l~~ 1792 (1832)
++..|...+.-||+|||+++||+|+|.|++||++|+|.++++||||+||++|.+..|.+++++++++ ..++..|..
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 455555544
No 43
>KOG0348|consensus
Probab=100.00 E-value=3.7e-56 Score=515.79 Aligned_cols=379 Identities=31% Similarity=0.500 Sum_probs=323.6
Q ss_pred cccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 726 PVRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.-..|.++||++-+...|+. +++..||.+|.++||.+++|+|++|-|+||||||++|+||+++.|..++.. .....
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k---i~Rs~ 210 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK---IQRSD 210 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc---ccccC
Confidence 34579999999999999975 899999999999999999999999999999999999999999998765432 12568
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCcee
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTY 882 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~ 882 (1832)
|+.+||||||||||.|+++.++++..++..- .+.+.||.....+...|+.|++|+|+|||||+|+|.+ ..+.++++++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 9999999999999999999999999887654 4778999999999999999999999999999999976 4678999999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++.||+.++..|+..+....... .....-....|.+++||||...+..++..-+.+|..
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e------------~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~ 358 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAE------------CKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVY 358 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchh------------cccccccHHHHhHhhhhhhHHHHHHHhhccccCcee
Confidence 99999999999999999999999884211000 000011124789999999999999999999999988
Q ss_pred EEEcc-----------------c--------CCCCcceEEEEEEcchhhHHHHHHHHHHc----CCCCCEEEEEcccchH
Q psy6409 963 VYIGS-----------------V--------GKPTERIEQIVYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGA 1013 (1832)
Q Consensus 963 v~~~~-----------------~--------~~~~~~i~q~~~~~~~~~k~~~L~~~l~~----~~~~~vIVFv~s~~~~ 1013 (1832)
+..+. . ...+..+.|.+..++..-++..|..+|.. ....++|||+.+.+.+
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 76211 0 12334556677777777777777776654 3456899999999999
Q ss_pred HHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCE
Q psy6409 1014 DVLAKGLEKL----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1071 (1832)
Q Consensus 1014 ~~l~~~L~~~----------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~ 1071 (1832)
+.-+..|... +..+.-+||+|+|++|..+++.|....-.||.||||++||||+|+|.+
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9888877532 356788999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1072 VINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1072 VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||.||+|.+.++|+||+|||+|+|..|.+++|+.+.|..+++.|+.+.
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888887753
No 44
>KOG0334|consensus
Probab=100.00 E-value=4e-56 Score=558.88 Aligned_cols=407 Identities=44% Similarity=0.733 Sum_probs=375.6
Q ss_pred ChhhhcccCHHHHHHHHhccc-ceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcC
Q psy6409 1370 TEKSLDEMTERDWRIFREDYS-ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448 (1832)
Q Consensus 1370 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~Ap 1448 (1832)
....+..|+..+...++.... |.++|...|.|+.+|...|++..++..++++||..|+|||.+|||+++.|+|||++|.
T Consensus 331 e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvak 410 (997)
T KOG0334|consen 331 EVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAK 410 (997)
T ss_pred cchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeec
Confidence 345667777777777776665 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~ 1528 (1832)
||||||++|+|||+.++...|... ...||.+||++||++||.||++++++|+..+++++++++||.....+...++
T Consensus 411 TgSGKT~af~LPmirhi~dQr~~~----~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelk 486 (997)
T KOG0334|consen 411 TGSGKTLAFLLPMIRHIKDQRPLE----EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELK 486 (997)
T ss_pred cCCccchhhhcchhhhhhcCCChh----hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHh
Confidence 999999999999999988766543 4569999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCHHHHHHHHHccc---cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhc
Q psy6409 1529 LGCEIVIATPGRLIDVLENRY---LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 1605 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~---~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~ 1605 (1832)
+++.|+|||||++++++-.+. .++.++.+||+||||+|++++|.|++..|+..++
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr---------------------- 544 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR---------------------- 544 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc----------------------
Confidence 999999999999999986543 4566777999999999999999999999998885
Q ss_pred cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhC-CCCcEEEEEC
Q psy6409 1606 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRG-VKKPVIIFVN 1683 (1832)
Q Consensus 1606 ~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~-~~~~vIVFv~ 1683 (1832)
..+|+++||||+|..++.++...+..|..+.++........+.|.+.++. +..|+..|.++|... ...++||||.
T Consensus 545 ---pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 ---PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVD 621 (997)
T ss_pred ---hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 45899999999999999999999999999999988888899999999998 899999999999764 6789999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHh
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRi 1763 (1832)
+...|..+...|.+.|+.+..+||+.++.+|..+++.|++|.+++||||+++++|+|++++.+|||||+|...++|+||+
T Consensus 622 ~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 622 KQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred CchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhh
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L 1806 (1832)
|||||+|..|.|++|+++.+.....+|...+..++ ..+|..|
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~-~~~P~~l 743 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK-QPVPKLL 743 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHHHhcc-CCCchHH
Confidence 99999999999999999988888888888776664 5666543
No 45
>KOG0347|consensus
Probab=100.00 E-value=2.5e-57 Score=526.83 Aligned_cols=381 Identities=31% Similarity=0.483 Sum_probs=318.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhc--
Q psy6409 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM-- 799 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~-- 799 (1832)
-+..++.|..++||..++.+|..+||..||+||+.+||++..| .||++.|.||||||+||.|||+..+.........
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456788999999999999999999999999999999999999 7999999999999999999999855432221111
Q ss_pred --cccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--
Q psy6409 800 --EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-- 875 (1832)
Q Consensus 800 --~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-- 875 (1832)
......+.+||++||||||.|+...+..++...++++..++||.+...|...|+..++|||||||||+.++..+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1112334599999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred -ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHH-----
Q psy6409 876 -VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV----- 949 (1832)
Q Consensus 876 -~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v----- 949 (1832)
.+.++++||+||||+|++.|+...+..|+..+. -++....+|++.||||+.-..
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~--------------------e~~~~~qrQTlVFSATlt~~~~~~~~ 395 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLN--------------------EEQKNRQRQTLVFSATLTLVLQQPLS 395 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhh--------------------hhhcccccceEEEEEEeehhhcChhH
Confidence 577889999999999999999999999998773 123345689999999985322
Q ss_pred ----------------HHHHHH--hcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccc
Q psy6409 950 ----------------ERLARS--YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 1011 (1832)
Q Consensus 950 ----------------~~~~~~--~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~ 1011 (1832)
+.+.+. |...|.++...+.......+....+.|....|-..|..+|. ..++++|||||++.
T Consensus 396 ~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId 474 (731)
T KOG0347|consen 396 SSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSID 474 (731)
T ss_pred HhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHH
Confidence 222222 23456666555544444444444444544444444444444 35678999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhccc
Q psy6409 1012 GADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091 (1832)
Q Consensus 1012 ~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRa 1091 (1832)
.+..|+-+|..++++...+|+.|.|.+|...+++|++....||||||||+||||||+|.|||||..|.+.+-|+||.|||
T Consensus 475 ~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 475 CVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred HHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEecCCCchHHHHHHHHHhcCCc
Q psy6409 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1124 (1832)
Q Consensus 1092 GR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1124 (1832)
+|++..|..+.|+.+.+...+..|...|+....
T Consensus 555 ARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 555 ARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred ccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 999999999999999998888888887765433
No 46
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.3e-54 Score=546.89 Aligned_cols=363 Identities=37% Similarity=0.588 Sum_probs=329.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|++.++++|.+.||..||++|.++||.++.|+|+|++||||||||++|++|+++++...+. ....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-----~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-----RKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCceE
Confidence 6999999999999999999999999999999999999999999999999999999999998865321 12345799
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
|||+||++||.|+.+.+..++..+++.+..++||.....+...+..+++|+|+|||+|++++..+.+.+..+++||||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 99999999999999999999999999999999999988888788888999999999999999998888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHHHHhcCCCcEEEEcc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~~~~l~~p~~v~~~~ 967 (1832)
|+|++++|...+..|...++ ...|+++||||++. .+..+...++.+|..+....
T Consensus 157 h~~l~~~~~~~~~~i~~~~~-------------------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETR-------------------------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCc-------------------------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 99999999999999987664 23689999999985 58888999999998887776
Q ss_pred cCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 968 VGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
.......+.+.+..+. ...+...|..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 212 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 212 SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 6655666777766654 466777888888766778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
++|+++|||||+++++|||+|+|++|||||+|.+...|+||+|||||+|..|.|++|++.+|..++..+.+++..
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998888888876644
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-54 Score=546.72 Aligned_cols=364 Identities=39% Similarity=0.663 Sum_probs=332.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
+|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 58899999999999999999999999999999999999999999999999999999999887542211 111234689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+||++||.|+.+.+..++..+++++..++||.+...+...+..+++|+|+||++|++++....+.++++++||||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999999999999999999999999999998888888888999999999999999988889999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|+|++++|...+..++..++ ...|+++||||++..+..+...++.+|..+.+...
T Consensus 159 h~ll~~~~~~~i~~il~~l~-------------------------~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~ 213 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLP-------------------------AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR 213 (456)
T ss_pred HHHhccccHHHHHHHHHhCC-------------------------ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc
Confidence 99999999999999988775 34689999999999999999999999988877666
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
......+.+.+..+....+...+..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 214 ~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 214 NTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred cccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 55666788888888887888888888877777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
|+++|||||+++++|||+|+|++||||++|.+..+|+||+|||||+|..|.|++|+...|...+..+.+.+.
T Consensus 294 g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~ 365 (456)
T PRK10590 294 GDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLK 365 (456)
T ss_pred CCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999998887764
No 48
>KOG0345|consensus
Probab=100.00 E-value=8e-55 Score=500.16 Aligned_cols=354 Identities=36% Similarity=0.564 Sum_probs=317.2
Q ss_pred CcccC--CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1404 NWKEA--SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1404 ~~~e~--~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.|+++ +|++++++++...||...||+|..+||.++.++||++-|+||||||+||++|++..+...... ......
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~----~~~~~v 80 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK----TPPGQV 80 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC----CCccce
Confidence 56665 466999999999999999999999999999999999999999999999999999988442211 011124
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCC-CCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCcee
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQCTY 1557 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~-~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v~l 1557 (1832)
-+|||+||||||.||...+..|... .++++.+++||.+..+....+. .++.|+|||||+|.+++.+.. +.+..+.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 6999999999999999999998776 6789999999998887766664 468899999999999998854 44569999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||+||||+++++||...++.|++.+| +.+++-+||||....+.++....+++|..
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LP-------------------------KQRRTGLFSATq~~~v~dL~raGLRNpv~ 215 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLP-------------------------KQRRTGLFSATQTQEVEDLARAGLRNPVR 215 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhcc-------------------------cccccccccchhhHHHHHHHHhhccCcee
Confidence 99999999999999999999999998 56789999999999999999999999999
Q ss_pred EEEcccCC--CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHH
Q psy6409 1638 VYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1638 v~i~~~~~--~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~ 1713 (1832)
+.+..... .+..+.-.|..|....|...++++|.....+++|||.+|...++..+..|... ...+..+||.|++..
T Consensus 216 V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 216 VSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred eeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 98877665 55567778888999999999999999988999999999999999999998875 678999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~ 1786 (1832)
|..+++.|++..-.||+|||+++||||||+|++||+||+|.++..|+||+|||||+|+.|.|++|+.+.+..+
T Consensus 296 R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aY 368 (567)
T KOG0345|consen 296 RAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAY 368 (567)
T ss_pred HHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHH
Confidence 9999999999889999999999999999999999999999999999999999999999999999999965433
No 49
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-54 Score=554.42 Aligned_cols=368 Identities=39% Similarity=0.631 Sum_probs=332.7
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|.+++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|++..+...+... .....+++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~--~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALA--DRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccc--ccccCCce
Confidence 3699999999999999999999999999999999999999999999999999999999998876533211 11223689
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llViD 1561 (1832)
+|||+||++||.|+++.+.+++..+++++..++|+.....+...+..+++|||+||++|++++.++ .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999999999999999999998887778888999999999999999765 4678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|...+..|+..++.. ...|+++||||++..+..+...++..|..+.+.
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~-----------------------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPER-----------------------GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccc-----------------------cCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 999999999999999999888621 246999999999999999999999998877776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
........+.+.+.......+...+..++......++||||+++..|+.|+..|...++.+..+||+|++.+|..+++.|
T Consensus 224 ~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~F 303 (572)
T PRK04537 224 TETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF 303 (572)
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 65555667788888888888899999999877788999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|+|++|||||+|.++.+|+||+|||||.|..|.|++|+.+.+...+.++.+.+.
T Consensus 304 r~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 304 QKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred HcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888877643
No 50
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.2e-54 Score=546.80 Aligned_cols=358 Identities=36% Similarity=0.578 Sum_probs=329.8
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|.+++|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|++..+.. ....++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---------~~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---------KRFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---------ccCCce
Confidence 47999999999999999999999999999999999999999999999999999999999987642 123568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|||+||++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 9999999999999999999987654 789999999999988888888899999999999999999988899999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|...+..++..+| ..+|+++||||+|+.+..+...++.+|..+.+.
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~-------------------------~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAP-------------------------ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCC-------------------------cccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999998886 346999999999999999999999999888776
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
... ....+.+.++.+....+...+..++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 210 ~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 210 STH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred cCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 544 3455788888888888999999999888888999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|++++|||||+|.+..+|+||+|||||+|..|.|++|+.+.|...+..+.+.+.
T Consensus 289 ~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 289 ANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred HcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877653
No 51
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.1e-54 Score=554.04 Aligned_cols=359 Identities=40% Similarity=0.658 Sum_probs=330.3
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|.+++|++.++++|.++||.+|+|+|.++||.++.|+|+|++||||||||+||++|++..+.. ...++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---------~~~~~ 75 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---------ELKAP 75 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------ccCCC
Confidence 346999999999999999999999999999999999999999999999999999999999987643 22467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
++|||+||++||.|++..+..+...+ ++.++.++||.+...+...+..+++|||+||++|.+++.+..+.++++.+|||
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 89999999999999999999987655 78999999999988888888889999999999999999998899999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++++|...+..|+..+| ...|+++||||+|..+..+...|+.+|..+.+
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp-------------------------~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i 210 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIP-------------------------EGHQTALFSATMPEAIRRITRRFMKEPQEVRI 210 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCC-------------------------CCCeEEEEEccCChhHHHHHHHHcCCCeEEEc
Confidence 99999999999999999998886 34689999999999999999999999988887
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
.........+.+.+..+....|...|..++......++||||+|+..|..|+..|...++.+..+||+|++.+|..+++.
T Consensus 211 ~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~ 290 (629)
T PRK11634 211 QSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 (629)
T ss_pred cCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHH
Confidence 76666666778888888888888999999987777899999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|++|+++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+++.+...+..+...+
T Consensus 291 Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 291 LKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred HhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998877777776553
No 52
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3e-53 Score=541.07 Aligned_cols=372 Identities=37% Similarity=0.590 Sum_probs=333.1
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.....|.+++|++.++++|.+.||..||++|.++|+.+++|+|+|++||||||||++|++|++..+...+... .....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~--~~~~~ 161 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK--ERYMG 161 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--ccccC
Confidence 3456899999999999999999999999999999999999999999999999999999999999886533211 11123
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccCCceeE
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYI 883 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~l 883 (1832)
.+++|||+||++||.|+.+.++.+...+++.+..++||.+...+...+. ..++|+|+||++|++++.++...++.+++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 6899999999999999999999999999999999999988777766654 468999999999999998888899999999
Q ss_pred EEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
||||||++++++|.+.+..|+..++. ....|++++|||++..+..++..++.+|..+
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~-----------------------~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v 298 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPR-----------------------KEERQTLLFSATFTDDVMNLAKQWTTDPAIV 298 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCC-----------------------CCCceEEEEEeecCHHHHHHHHHhccCCEEE
Confidence 99999999999999999999887752 1236999999999999999999999999888
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 964 ~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
.+.........+.+.+..+....+...|..++......++||||+++..|+.+++.|...++.+..+||++++.+|..++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~ 378 (475)
T PRK01297 299 EIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTL 378 (475)
T ss_pred EeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 77766666666778888877888888888888877778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
+.|++|+++|||||+++++|||||+|++||+||+|.++.+|+||+|||||.|..|.+++|++++|..++..++.++..
T Consensus 379 ~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 379 EGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred HHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888776543
No 53
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.7e-53 Score=532.44 Aligned_cols=362 Identities=37% Similarity=0.590 Sum_probs=328.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
+|++++|++.++++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|++.++...+. ....++++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-----~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-----RKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCceE
Confidence 5899999999999999999999999999999999999999999999999999999999998865432 12245789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+||++||.|+++.+..++..+++++..++||.....+...+..+++|+|+||++|.+++....+.+.++++||||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEa 156 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEA 156 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECH
Confidence 99999999999999999999999999999999999988887777888999999999999999998888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHhcCCCcEEEEcc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
|+|++++|...+..|...++ ...|+++||||++. .+..+...++.+|..+.+..
T Consensus 157 h~~l~~~~~~~~~~i~~~~~-------------------------~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETR-------------------------WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCc-------------------------cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 99999999999999887664 33689999999985 57888888888998887776
Q ss_pred cCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1643 VGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
.......+.+.+..+. ...+...|..++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|
T Consensus 212 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f 291 (434)
T PRK11192 212 SRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291 (434)
T ss_pred CcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 6666666777766655 466778888888766778999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++|+++|||||+++++|||+|+|++|||||+|.+...|+||+|||||+|..|.|++|++..|...+..+..++.
T Consensus 292 ~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 292 TDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred hCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887654
No 54
>KOG0346|consensus
Probab=100.00 E-value=2.6e-54 Score=490.97 Aligned_cols=364 Identities=32% Similarity=0.518 Sum_probs=329.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|.+.+++++.+.||..||-||+.|||.++.|+|+++.|.||||||++|+||+++.|....... ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---DGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---cccccce
Confidence 5899999999999999999999999999999999999999999999999999999999999987644322 3567999
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCC--CeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 884 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~--i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lV 884 (1832)
++||+||||||+|++..+.++...++ ++++-+..+++.......|...++|||+||++++.++..+. ..+..+.++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999999876654 67777777787777777888889999999999999998887 6889999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
+||||.|+..||+.++..|...+|. ..|++++|||+..++..+-+.++.+|+.+.
T Consensus 176 vDEADLllsfGYeedlk~l~~~LPr-------------------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLPR-------------------------IYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCCc-------------------------hhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 9999999999999999999999983 369999999999999999999999999987
Q ss_pred EcccCCC-CcceEEEEEEcchhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 965 IGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 965 ~~~~~~~-~~~i~q~~~~~~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+.....+ ...+.|+...|.+.+|+..+..+++- .-.+++|||||+.+.|..|--+|+..|++.+++.|.|+...|..+
T Consensus 231 l~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred eccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 7665544 46789999999999999888888763 357789999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEeccc-----------------------------------ccccCCCcCcCEEEEcCCCCCHhHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDV-----------------------------------AGRGIDIKDVSMVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv-----------------------------------~~rGlDip~v~~VI~~d~p~s~~~yvQr 1087 (1832)
++.|..|-++||||||. .+||||+.+|+.|||||+|.+..+|+||
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHR 390 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHR 390 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHh
Confidence 99999999999999992 3599999999999999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+|||+|++++|.+++|+.+.+..-...|+..+
T Consensus 391 vGRTaRg~n~GtalSfv~P~e~~g~~~le~~~ 422 (569)
T KOG0346|consen 391 VGRTARGNNKGTALSFVSPKEEFGKESLESIL 422 (569)
T ss_pred ccccccCCCCCceEEEecchHHhhhhHHHHHH
Confidence 99999999999999999999877666666654
No 55
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-52 Score=530.87 Aligned_cols=386 Identities=36% Similarity=0.573 Sum_probs=339.8
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
....|.+++|++.++++|.++||..|+|+|.++|+.++.|+|+|++||||||||++|++|++..+...+... ......
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~--~~~~~~ 162 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPK--ERYMGE 162 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCccc--ccccCC
Confidence 345788899999999999999999999999999999999999999999999999999999998876543211 011235
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llV 1559 (1832)
+++|||+||++||.|+++.++.+...+++++..++||.+...+...+. ..++|||+||++|.+++..+...++++++||
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 799999999999999999999999889999999999988776665554 4689999999999999999889999999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
|||||++++++|.+.+..|+..++.. ...|++++|||++..+..+...++.+|..+.
T Consensus 243 iDEah~l~~~~~~~~l~~i~~~~~~~-----------------------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~ 299 (475)
T PRK01297 243 LDEADRMLDMGFIPQVRQIIRQTPRK-----------------------EERQTLLFSATFTDDVMNLAKQWTTDPAIVE 299 (475)
T ss_pred echHHHHHhcccHHHHHHHHHhCCCC-----------------------CCceEEEEEeecCHHHHHHHHHhccCCEEEE
Confidence 99999999999999999998877521 2368999999999999999999999998887
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.........+.+.+..+....+...+..++......++||||+++.+|+.++..|...++.+..+||++++.+|..+++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~ 379 (475)
T PRK01297 300 IEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLE 379 (475)
T ss_pred eccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 77666666667777777777888888888888777789999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCC-
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP- 1798 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~- 1798 (1832)
.|++|+++|||||+++++|||||+|++||+|++|.|+.+|+||+|||||.|..|.+++|++++|...+..+.+++....
T Consensus 380 ~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 380 GFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred HHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888877764332
Q ss_pred CCCCChhhcCCCC
Q psy6409 1799 VSTCPPELLNHPD 1811 (1832)
Q Consensus 1799 ~~~~~~~L~~h~~ 1811 (1832)
..-.|.+|+.+..
T Consensus 460 ~~~~~~~~~~~~~ 472 (475)
T PRK01297 460 CEMPPAELLKPVP 472 (475)
T ss_pred ccCCcHHHhhhhh
Confidence 2345556776543
No 56
>KOG0347|consensus
Probab=100.00 E-value=1.1e-54 Score=504.74 Aligned_cols=379 Identities=31% Similarity=0.496 Sum_probs=319.3
Q ss_pred CCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhc-c--
Q psy6409 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR-M-- 1474 (1832)
Q Consensus 1399 p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~-~-- 1474 (1832)
+..+..|..++||..++.+|..+||..|||||..++|+++.| .|+++.|.||||||+||.+||+..+........ .
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 345678999999999999999999999999999999999999 799999999999999999999985443222111 1
Q ss_pred -cccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc---
Q psy6409 1475 -EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--- 1550 (1832)
Q Consensus 1475 -~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~--- 1550 (1832)
......+.+||++||||||.|+...+..++...++++..++||.+...|...++..++|||||||||+.++.....
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 1112234599999999999999999999999999999999999999999999999999999999999999977554
Q ss_pred ccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH------
Q psy6409 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV------ 1624 (1832)
Q Consensus 1551 ~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~------ 1624 (1832)
.+.++.+||+||||+|++.|+...+..|+..+.. .+....+|++.||||+.-..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e--------------------~~~~~qrQTlVFSATlt~~~~~~~~~ 396 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE--------------------EQKNRQRQTLVFSATLTLVLQQPLSS 396 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh--------------------hhcccccceEEEEEEeehhhcChhHH
Confidence 6788999999999999999999999999988751 22345679999999985332
Q ss_pred ---------------HHHHHH--hcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH
Q psy6409 1625 ---------------ERLARS--YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1625 ---------------~~~~~~--~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~ 1687 (1832)
+.++.. +...|..+...+.......+......|+...|-.+|+.+|..+ ++++|||||++..
T Consensus 397 ~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~ 475 (731)
T KOG0347|consen 397 SRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDC 475 (731)
T ss_pred hhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHH
Confidence 122222 2235555655554444444444444555555655665566544 5789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccc
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaG 1767 (1832)
+..|+-+|..++++...+|+.|.|.+|...++.|++....|||||||++||+|||+|+|||||.+|.+.+.|+||.|||+
T Consensus 476 vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTA 555 (731)
T KOG0347|consen 476 VKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTA 555 (731)
T ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEeeCCChhHHHHHHHHhhcCC
Q psy6409 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1798 (1832)
Q Consensus 1768 R~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1798 (1832)
|+++.|..++||.+.+...|..|..-|..-+
T Consensus 556 RA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 556 RANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred cccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 9999999999999999999999988776654
No 57
>KOG0348|consensus
Probab=100.00 E-value=7e-53 Score=488.58 Aligned_cols=377 Identities=31% Similarity=0.502 Sum_probs=319.0
Q ss_pred cCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
-..|.++||++-+...|+. +++..||.+|.++||.+++|+|++|-|+||||||++|++|+++.+..++..- ....|
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki---~Rs~G 211 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI---QRSDG 211 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc---cccCC
Confidence 3568899999999999985 8999999999999999999999999999999999999999999988754321 24679
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCe-EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-ccccCCceeE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYI 1558 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~-v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~ll 1558 (1832)
+++||||||||||.|+|+.++++...+..- .+.+.||-....+...++.|++|+|+|||||+++|.+. .+.++++.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 999999999999999999999998776643 35678888888888899999999999999999999884 5778999999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||||+|++.||+..+..|+..+...... .+.........|.+++|||+...+..++...|.+|..+
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~------------e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I 359 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNA------------ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYI 359 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccch------------hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceee
Confidence 999999999999999999999988532110 01111122347899999999999999999999999887
Q ss_pred EEccc-------------------------CCCCcceEEEEEEcchhhHHHHHHHHHHhC----CCCcEEEEECchhHHH
Q psy6409 1639 YIGSV-------------------------GKPTERIEQIVYILSEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGAD 1689 (1832)
Q Consensus 1639 ~i~~~-------------------------~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~ 1689 (1832)
..... ...+..+.|.|..++..-++..|..+|... ...++|||+++.+.++
T Consensus 360 ~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 360 SLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred eccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 62110 112234456677777777777777776543 5568999999999999
Q ss_pred HHHHHHHHc----------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEE
Q psy6409 1690 VLAKGLEKL----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1747 (1832)
Q Consensus 1690 ~l~~~L~~~----------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~V 1747 (1832)
.-|..|... +..+.-+||+|+|++|..+++.|....-.||.||||++||+|+|+|.+|
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~v 519 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLV 519 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeE
Confidence 988877542 3457789999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1748 I~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|.||+|.++++|+||+||++|+|.+|.+++|+.+.+.+++..+...
T Consensus 520 VQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 520 VQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred EEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999877666543
No 58
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.8e-51 Score=515.05 Aligned_cols=363 Identities=32% Similarity=0.556 Sum_probs=325.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
...+|++++|++.++++|.++||..|+|+|.+||+.+++|+|++++||||||||++|++|++..+.. ...+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---------~~~~ 96 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---------DLNA 96 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------CCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999987632 1346
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+++|||+||++||.|+.+.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.++++++|||
T Consensus 97 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 97 CQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 78999999999999999999999888889999999999888777778888999999999999999988888999999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||++++.+|...+..++..++ ...|++++|||+|+.+..+...++.+|..+.+
T Consensus 177 DEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T PTZ00424 177 DEADEMLSRGFKGQIYDVFKKLP-------------------------PDVQVALFSATMPNEILELTTKFMRDPKRILV 231 (401)
T ss_pred ecHHHHHhcchHHHHHHHHhhCC-------------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999988888887664 34799999999999999999999998887766
Q ss_pred cccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.........+.+.+..+.. ..+...+..++......++||||+++..|+.+++.|...++.+..+||+|++.+|..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 232 KKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred CCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHH
Confidence 5544444556666555543 446667777777666778999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|..|.|++|+++++...+..+.++++.+
T Consensus 312 ~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 312 EFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ 389 (401)
T ss_pred HHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888877554
No 59
>KOG0332|consensus
Probab=100.00 E-value=2.2e-52 Score=467.12 Aligned_cols=364 Identities=30% Similarity=0.497 Sum_probs=326.0
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
..+++|++++|.|++++.|..++|..|+.||..|+|.++.. +|+|.++..|+|||.||+|.+|..+ ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv---------d~~ 157 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV---------DPD 157 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc---------Ccc
Confidence 45788999999999999999999999999999999999985 8999999999999999999999765 234
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCce
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCT 881 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~ 881 (1832)
...|.++||+||||||.|+.+.+.++++..++...+.+-|.....- -.-..+|+|+|||.+.|++.. +.+.++.++
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 5689999999999999999999999999999988888777621111 011368999999999999988 888999999
Q ss_pred eEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 882 YIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 882 ~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
.+|+||||.|++ .||+++-..|...+| ...|+++||||+...+..|+...+.+|
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP-------------------------~~~QllLFSATf~e~V~~Fa~kivpn~ 289 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLP-------------------------RNQQLLLFSATFVEKVAAFALKIVPNA 289 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcC-------------------------CcceEEeeechhHHHHHHHHHHhcCCC
Confidence 999999999987 679988888887776 347999999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 1039 (1832)
..+.+.........+.|++..|. ..+|+..|.++.....-++.||||.++..|.+|+..|...|+.|..+||+|.-.+|
T Consensus 290 n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 290 NVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred ceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 99999999999999999888775 56788888887766677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC------CHhHHHHHhcccccCCCCcEEEEEecCCCc-hHH
Q psy6409 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS-HLF 1112 (1832)
Q Consensus 1040 ~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~-~~~ 1112 (1832)
..+++.|+.|..+|||+|++++||||++.|++|||||+|. +.+.|+||+|||||+|+.|.+|.|+...++ ..+
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 9999999999999999999999999999999999999996 789999999999999999999999998765 567
Q ss_pred HHHHHHHhcCCcc
Q psy6409 1113 YDLKQMMISSPVT 1125 (1832)
Q Consensus 1113 ~~l~~~l~~~~~~ 1125 (1832)
+.|.++++..+..
T Consensus 450 n~iq~~F~~~i~~ 462 (477)
T KOG0332|consen 450 NKIQKHFNMKIKR 462 (477)
T ss_pred HHHHHHHhhccee
Confidence 7888888765443
No 60
>KOG0346|consensus
Probab=100.00 E-value=8.1e-52 Score=470.62 Aligned_cols=367 Identities=32% Similarity=0.521 Sum_probs=329.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|.+.+++++.+.||..||-||..|||.+++|+|+++.|.||||||.||++|+++.+...... .....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t---~~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT---NDGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---ccccccce
Confidence 579999999999999999999999999999999999999999999999999999999999988764332 24567999
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCC--CeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIV 1559 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g--~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llV 1559 (1832)
++|||||+|||+|++..+.++....+ ++++-+.++.+.......+...++|||+||++++.++..+. ..+..+.++|
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999998755443 56667776777666667788889999999999999998887 6788999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
+||||.|+..||.+.+..|.+.+| +..|.+++|||+...+..+-+.++.+|..+.
T Consensus 176 vDEADLllsfGYeedlk~l~~~LP-------------------------r~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 176 VDEADLLLSFGYEEDLKKLRSHLP-------------------------RIYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred echhhhhhhcccHHHHHHHHHhCC-------------------------chhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 999999999999999999999998 4479999999999999999999999999987
Q ss_pred EcccCCC-CcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1640 IGSVGKP-TERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1640 i~~~~~~-~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
+.....+ ...+.|++..|.+.+|...++.+++-. -.+++|||||++..|..|-..|...|+..++++|.|+...|..+
T Consensus 231 l~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hi 310 (569)
T KOG0346|consen 231 LTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHI 310 (569)
T ss_pred eccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhH
Confidence 7665444 467889999999999999888887643 56889999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCcEEEEccc-----------------------------------ccccCCCCCCCEEEEeCCCCCHHHHHHH
Q psy6409 1718 LNSLKGGSKDILVATDV-----------------------------------AGRGIDIKDVSMVINYDMAKSIEDYTHR 1762 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdv-----------------------------------l~~GIDip~v~~VI~~d~P~s~~~yiQR 1762 (1832)
+++|..|-++|+||||. .+||||+.+|+.|||||+|.++.+||||
T Consensus 311 i~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHR 390 (569)
T KOG0346|consen 311 IEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHR 390 (569)
T ss_pred HHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHh
Confidence 99999999999999992 4699999999999999999999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
+|||+|+++.|.+++|+.+.+......+...+...
T Consensus 391 vGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 391 VGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred ccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 99999999999999999999877666676666543
No 61
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.7e-50 Score=506.15 Aligned_cols=370 Identities=32% Similarity=0.560 Sum_probs=327.0
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
..+|++++|++.++++|..+||..|+|+|.++|+.++.|+|++++||||||||++|++|++..+.. ...+.
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---------~~~~~ 97 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---------DLNAC 97 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------CCCCc
Confidence 567999999999999999999999999999999999999999999999999999999999977632 12467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++|||+||++|+.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++..+...++++++||||
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 89999999999999999999998888888999999988877777777789999999999999999888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++++.+|...+..++..++ ...|++++|||+|+.+..+...++..|..+.+.
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 232 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLP-------------------------PDVQVALFSATMPNEILELTTKFMRDPKRILVK 232 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCC-------------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999888888877664 346899999999999998888999888877665
Q ss_pred ccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
........+.+.+..+.. ..+...+..++......++||||+++.+|+.++..|...++.+..+||++++.+|..+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~ 312 (401)
T PTZ00424 233 KDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMRE 312 (401)
T ss_pred CCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHH
Confidence 544444556666555543 4566777777777677889999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCC
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~ 1800 (1832)
|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++++...+..+.+.+... ..
T Consensus 313 f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~-~~ 391 (401)
T PTZ00424 313 FRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQ-IE 391 (401)
T ss_pred HHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887766533 34
Q ss_pred CCChhh
Q psy6409 1801 TCPPEL 1806 (1832)
Q Consensus 1801 ~~~~~L 1806 (1832)
.+++..
T Consensus 392 ~~~~~~ 397 (401)
T PTZ00424 392 EMPMEV 397 (401)
T ss_pred ccCcch
Confidence 455443
No 62
>KOG0344|consensus
Probab=100.00 E-value=3.6e-51 Score=486.11 Aligned_cols=385 Identities=34% Similarity=0.520 Sum_probs=342.7
Q ss_pred HHHhhccceecCCCCCCcccCccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHH
Q psy6409 709 IFREDYSITIKGGKVPDPVRNWKE----ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 709 ~~~~~~~i~~~~~~~p~p~~~f~~----~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ll 784 (1832)
..|+.+.+.+.|.++|+|+.+|.+ ....+.+++.+...||..|+|+|.+|+|.++.++|++.|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 457778899999999999999997 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc--CCCCCeEEEEEcCCc-hHHHHHHHhcCCceeec
Q psy6409 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLS-REEQGFRLRLGCEIVIA 861 (1832)
Q Consensus 785 pil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~--~~~~i~v~~~~Gg~~-~~~~~~~l~~~~~IlV~ 861 (1832)
|++.+|..+.. .....|-+++|+.|||+||.|++.++.++. ...++++........ ...........++|+|+
T Consensus 193 Pil~~L~~~~~----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 193 PILQHLKDLSQ----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred HHHHHHHHhhc----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 99999865432 234568899999999999999999999998 666666665544422 22233333446899999
Q ss_pred CHHHHHHHHHccc--cccCCceeEEEecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceE
Q psy6409 862 TPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 938 (1832)
Q Consensus 862 TP~rL~d~l~~~~--~~l~~~~~lViDEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~ 938 (1832)
||-++..++..+. +.+..+.++|+||||++++. +|..++..|+..+.. +...+
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s------------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS------------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC------------------------cchhh
Confidence 9999999998775 68999999999999999998 899999999887742 33567
Q ss_pred EEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHH
Q psy6409 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLA 1017 (1832)
Q Consensus 939 v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~ 1017 (1832)
-+||||++.+++.++.....++..+.++........+.|...++ ++..|+..+.+++..+..+|+|||+.+.+.|..|+
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 79999999999999999999999999999888888888865554 67889999999999999999999999999999999
Q ss_pred HHH-HHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1018 KGL-EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1018 ~~L-~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
..| .-.++++.++||..++.+|..++++|+.|+++|||||++++||||+-+|++|||||+|.+..+|+||+||+||+|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1097 EGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1097 ~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.|.|++||+..|..++..+...+..
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHH
Confidence 9999999999999999999887754
No 63
>KOG0327|consensus
Probab=100.00 E-value=8.6e-51 Score=461.61 Aligned_cols=360 Identities=32% Similarity=0.571 Sum_probs=333.9
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+.+|++++|++.|+..|...||++|+.||+.||+.+..|.|+++.+++|+|||.+|.+++++.+. ......
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD---------~~~ke~ 95 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQID---------MSVKET 95 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcC---------cchHHH
Confidence 34899999999999999999999999999999999999999999999999999999999998762 123456
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH-hcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l-~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
.|++++|||+||+|+.+....++..++.++..++||.....+...+ ..+++|+|+|||++.+.+.+..+....+.++|+
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 7999999999999999999999999999999999999877554444 446999999999999999999888889999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||.|+..||.+++..|+..+| ...|++++|||+|+++..+.+.|+.+|..+.+
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp-------------------------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELP-------------------------SDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcC-------------------------cchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 99999999999999999999997 23599999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.........+.|++..+...+|+..|..+.. .-.+.+||||++..+..+...|...++.+..+||.|.+.+|..++..
T Consensus 231 kk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred cchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHH
Confidence 8888888889999998888889999999888 56679999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|+.|..+|||.|++++||+|+-.+++||||++|...++|+||+||+||+|.+|.++.|++.++...+..+.++.+..
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~ 385 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP 385 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888766543
No 64
>KOG0332|consensus
Probab=100.00 E-value=4.8e-50 Score=448.48 Aligned_cols=360 Identities=30% Similarity=0.506 Sum_probs=320.5
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
....+|++++|.|++++.|..++|..|+.||..|+|.++.. +|+|.++..|+|||.||.|.||..+ ...
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv---------d~~ 157 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV---------DPD 157 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc---------Ccc
Confidence 45778999999999999999999999999999999999975 8999999999999999999998654 223
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCce
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCT 1556 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~ 1556 (1832)
...|.+++|+||+|||.|+...+.+.|+..++.+...+-|....... .-..+|+|+|||.+.+++.. ..+.++.+.
T Consensus 158 ~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kik 234 (477)
T KOG0332|consen 158 VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIK 234 (477)
T ss_pred ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhce
Confidence 46789999999999999999999999999888877766555211110 01258999999999999987 788899999
Q ss_pred eEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1557 YIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1557 llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
.+|+||||.|++ .||.++-..|...+| +..|+++||||+...+..++...+.++
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP-------------------------~~~QllLFSATf~e~V~~Fa~kivpn~ 289 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLP-------------------------RNQQLLLFSATFVEKVAAFALKIVPNA 289 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcC-------------------------CcceEEeeechhHHHHHHHHHHhcCCC
Confidence 999999999987 679998888887776 457999999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R 1714 (1832)
..+.+.........|.|++..|. ..+|...|+++.....-++.||||.++++|.+|+..|...|+.|.++||.|+-.+|
T Consensus 290 n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 290 NVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred ceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 99999999999999999887775 56788999998777778899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC------CHHHHHHHhcccccCCCccEEEEEeeCCC-hhHH
Q psy6409 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLF 1787 (1832)
Q Consensus 1715 ~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~ 1787 (1832)
..+++.|+.|..+|||+|++++||||++.|++|||||+|. +.+.|+||||||||+|+.|.++.|+++.+ ...+
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 9999999999999999999999999999999999999995 78999999999999999999999999875 5666
Q ss_pred HHHHHHhhc
Q psy6409 1788 YDLKQMMIS 1796 (1832)
Q Consensus 1788 ~~l~~~l~~ 1796 (1832)
..+.+++..
T Consensus 450 n~iq~~F~~ 458 (477)
T KOG0332|consen 450 NKIQKHFNM 458 (477)
T ss_pred HHHHHHHhh
Confidence 666665533
No 65
>KOG0337|consensus
Probab=100.00 E-value=6.5e-51 Score=461.69 Aligned_cols=365 Identities=35% Similarity=0.565 Sum_probs=341.4
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
-.+|..+||...++++|.+.||..|||||++.||.+++++|++..|-||||||.||+||+++.+..+. ..|.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~ 91 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGL 91 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------cccc
Confidence 45799999999999999999999999999999999999999999999999999999999999886532 4578
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+++++.|||+||.|+.+.++.++...++++.+++||.+..+|...+..+++||+||||+++.+.-.-.+.|+.+.|||+|
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999987776666789999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+++.+||.+++..++.++| ..+|+++||||+|..+..|++..+.+|..+.++
T Consensus 172 Eadrlfemgfqeql~e~l~rl~-------------------------~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLP-------------------------ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCC-------------------------CcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 9999999999999999999997 236999999999999999999999999999988
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
-.......++..+..+...+|...|+.++... .+.+++|||.++.+++.+...|...|+.+..++|.|.+..|..-+..
T Consensus 227 vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 227 VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 77888888888999999999999999999764 45689999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCc
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1124 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1124 (1832)
|+.++..+||.||+++||+|||-.+.|||||+|.+..-|+||+||+.|+|..|.++.|+++.+..++.+|.-++....+
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 9999999999999999999999999999999999999999999999999999999999999999888888776655433
No 66
>KOG0344|consensus
Probab=100.00 E-value=2.7e-49 Score=470.15 Aligned_cols=398 Identities=33% Similarity=0.514 Sum_probs=352.6
Q ss_pred HHHhcccceecCCCCCCCcCCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHH
Q psy6409 1384 IFREDYSITIKGGKVPDPVRNWKEA----SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1384 ~~~~~~~i~~~~~~~p~p~~~~~e~----~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~l 1459 (1832)
..++.+.+.+.|..+|+|+.+|.++ ...+.+++.+...+|..|+|+|.+|+|.++.++|++.|||||||||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 3466788999999999999999984 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc--CCCCCeEEEEECCcch-HHHHHHhhcCCcEEEe
Q psy6409 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSR-EEQGFRLRLGCEIVIA 1536 (1832)
Q Consensus 1460 pil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~--~~~g~~v~~l~gg~~~-~~~~~~l~~~~~IiVa 1536 (1832)
|++.++..... .....|-+++|++||++||.|++.++.++. ...+.++........+ ....+.....++|+|+
T Consensus 193 Pil~~L~~~~~----~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 193 PILQHLKDLSQ----EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred HHHHHHHHhhc----ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 99998876432 233568899999999999999999999998 5666666655544332 2333444556899999
Q ss_pred CHHHHHHHHHccc--cccCCceeEEEccchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceE
Q psy6409 1537 TPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 1613 (1832)
Q Consensus 1537 TP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~ 1613 (1832)
||-++..++.... +.+..|.++|+||||++++. +|..++..|++.+.. +...+
T Consensus 269 TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s------------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS------------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC------------------------cchhh
Confidence 9999999998876 67899999999999999998 899999999987752 23456
Q ss_pred EEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-EEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHH
Q psy6409 1614 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV-YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLA 1692 (1832)
Q Consensus 1614 v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~-~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~ 1692 (1832)
-+||||++..+++++.....++..+.++........+.|.. +...+..|+..+.+++.....+|+|||+.+.+.|..|+
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 78999999999999999999999999998888888888764 45567889999999999999999999999999999999
Q ss_pred HHH-HHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1693 KGL-EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1693 ~~L-~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
..| .-.++.+.++||..++.+|..+++.|+.|+++|||||++++||+|+-+|++|||||+|.+..+|+||+||+||+|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCC
Q psy6409 1772 EGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810 (1832)
Q Consensus 1772 ~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~ 1810 (1832)
.|.|++|+++.|......+.+.+..+. ..||.++....
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~sG-~evpe~~m~~~ 522 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQSG-CEVPEKIMGIK 522 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHHcC-CcchHHHHhhh
Confidence 999999999999999999999988875 79999877654
No 67
>KOG0350|consensus
Probab=100.00 E-value=5.3e-49 Score=454.44 Aligned_cols=376 Identities=27% Similarity=0.421 Sum_probs=312.0
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHHc---------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 736 PTEILEIIEKIGYAEPTPIQRQAIPIGLQ---------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 736 ~~~l~~~l~~~g~~~pt~iQ~~ai~~il~---------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...+..++.++++...+|+|.+++|.++. .+||+|.||||||||++|.|||++.+..-+ .+.-
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~--------v~~L 216 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP--------VKRL 216 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC--------ccce
Confidence 34566779999999999999999999863 589999999999999999999999875422 2457
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcC-----CceeecCHHHHHHHHH-ccccccCCc
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-----CEIVIATPGRLIDVLE-NRYLVLNQC 880 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~-----~~IlV~TP~rL~d~l~-~~~~~l~~~ 880 (1832)
++|||+||++||.|++..|.+++...|+.|+.+.|-.+...+...|... .+|+|+|||||+|+|. .+.+.|+++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~L 296 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHL 296 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhc
Confidence 8999999999999999999999999999999999999988887777643 3899999999999998 567899999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCC-------C-C-chhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP-------D-T-EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~-------~-~-~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
+|+||||||+|++..|..++-.++..+....... . . ........++..+.......+.+.||||+.....+
T Consensus 297 rfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K 376 (620)
T KOG0350|consen 297 RFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK 376 (620)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH
Confidence 9999999999999998888888777664331100 0 0 01111222222222334556789999999988888
Q ss_pred HHHHhcCCCcEEEEc----ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHH----Hc
Q psy6409 952 LARSYLRRPATVYIG----SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE----KL 1023 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~----~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~----~~ 1023 (1832)
+...-+..|..+.+. .....+..+.+....+...-+...+..++....-.++|+|+++...+..++..|. ..
T Consensus 377 l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 377 LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 888888888554443 3445556677777777777788888888888888899999999999999999887 23
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
.+++..+.|+++...|...++.|..|.++||||||+++||||+.+|+.|||||+|.+...|+||+|||||+|..|.|+++
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l 1119 (1832)
++..+...+..+-+-.
T Consensus 537 l~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKT 552 (620)
T ss_pred eccccchHHHHHHHHh
Confidence 9999988877765543
No 68
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=9.7e-48 Score=505.85 Aligned_cols=353 Identities=21% Similarity=0.277 Sum_probs=283.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
.|++.+.++|++.||++|+++|.+|||.+++|+|+|++||||||||+||+||+++.+.. ..++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~----------~~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD----------DPRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh----------CCCcEEEEEcC
Confidence 48899999999999999999999999999999999999999999999999999988743 23678999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc----ccccCCceeEEEecch
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR----YLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~----~~~l~~~~~lViDEaH 889 (1832)
|||||.|+...++.++ ..++++..+.|+.+.. +...+..+++|||+||++|...+... ...++++++|||||||
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999987 4578888888887744 44556678999999999997544321 1247899999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~ 969 (1832)
+|.+ .|+..+..++.++.. +. .......|+++||||+++..+ ++..++..|..+ +....
T Consensus 168 ~~~g-~fg~~~~~il~rL~r---------------i~---~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 168 SYRG-VFGSHVALVLRRLRR---------------LC---ARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred hccC-ccHHHHHHHHHHHHH---------------HH---HhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 9976 599998888877631 11 112345799999999998765 677777777544 33222
Q ss_pred CCCcceEEEEEEcc-----------------hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--------C
Q psy6409 970 KPTERIEQIVYILS-----------------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--------G 1024 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~-----------------~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--------g 1024 (1832)
.+...... ..+.. ...+...+..++.. ..++||||+|++.|+.++..|... +
T Consensus 227 ~~~~~~~~-~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~ 303 (742)
T TIGR03817 227 SPRGARTV-ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA 303 (742)
T ss_pred CCcCceEE-EEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 22222221 11111 12344555555553 568999999999999999998764 5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1025 ~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
..+..+||++++++|..+++.|++|++++||||+++++|||||++++|||||+|.++.+|+||+|||||.|..|.+++++
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC--CchHHHHHHHHHhcC
Q psy6409 1105 TKD--DSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1105 ~~~--d~~~~~~l~~~l~~~ 1122 (1832)
+.+ |..++..+...+...
T Consensus 384 ~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred CCChHHHHHHhCHHHHhcCC
Confidence 743 555566565555443
No 69
>KOG0327|consensus
Probab=100.00 E-value=1.4e-48 Score=443.56 Aligned_cols=367 Identities=31% Similarity=0.572 Sum_probs=336.2
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+.+|++++|++.+++.+..+||..|+.||..||..+..|.|+++.+.+|+|||.+|.+++++.+-- .....
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---------~~ke~ 95 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---------SVKET 95 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---------chHHH
Confidence 348999999999999999999999999999999999999999999999999999999999987621 22456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh-hcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
.||+++||++||.|+.+....++...+.++..++||.+...+...+ ..+++|+|+|||++.+++....+....+.++|+
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 7999999999999999999999999999999999988876444444 446899999999999999999888889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||.|+..||.+++..|+..+| ...|++++|||+|.++....+.++.+|..+.+
T Consensus 176 DEaDEmLs~gfkdqI~~if~~lp-------------------------~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~v 230 (397)
T KOG0327|consen 176 DEADEMLSRGFKDQIYDIFQELP-------------------------SDVQVVLLSATMPSDVLEVTKKFMREPVRILV 230 (397)
T ss_pred cchHhhhccchHHHHHHHHHHcC-------------------------cchhheeecccCcHHHHHHHHHhccCceEEEe
Confidence 99999999999999999999998 34699999999999999999999999999999
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
...+.....+.|++..+....|...|+++.. .....+||||+++.+..+...|...++.+..+||.|.+.+|..++..
T Consensus 231 kk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 231 KKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred cchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHH
Confidence 9888888889999888888889999999988 55679999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCC
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~ 1800 (1832)
|++|..+|||.|+.++||+|+-++++||||++|.+.++|+||+||+||.|.+|.++.|+++.|...++++.+.+.-. +.
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~-i~ 387 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTP-IE 387 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCc-ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766433 45
Q ss_pred CCChh
Q psy6409 1801 TCPPE 1805 (1832)
Q Consensus 1801 ~~~~~ 1805 (1832)
.+|..
T Consensus 388 e~p~~ 392 (397)
T KOG0327|consen 388 ELPSN 392 (397)
T ss_pred ecccc
Confidence 55544
No 70
>KOG4284|consensus
Probab=100.00 E-value=8.2e-49 Score=460.80 Aligned_cols=353 Identities=31% Similarity=0.478 Sum_probs=323.1
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
..|.-...|+++.|...++..|+..+|..||+||..|||.++.+-|+||.|..|+|||++|.+.+++.+. .
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---------~ 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---------S 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---------c
Confidence 3455667899999999999999999999999999999999999999999999999999999988876542 2
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCC-CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~-~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
....+.++||+||||||.||.+.+.+++.. .|.+|...+||.........++ .++|+||||||+..++..+.++.+++
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccce
Confidence 346789999999999999999999999875 4899999999999877766665 58899999999999999999999999
Q ss_pred eeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 881 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 881 ~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+++||||||.|++ ..|..++.-|+..+| ..+|++.||||.|..+..++..|+++
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP-------------------------~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLP-------------------------QIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcc-------------------------hhheeeEEeccCchhHHHHHHHHhcc
Confidence 9999999999999 569999999999997 34899999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchh--------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQ--------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~--------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
|..+...........+.|+++.+... .|+..|-+++...+-.+.||||+....|+-++.+|...|+.|.++.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 99999888777777888888765432 4677788888888888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|.|+|.+|..+++.++.-.++|||+||+.+||||-|+|++|||.|+|.+.++|.||||||||+|..|.+++|+.....
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998754
No 71
>KOG0350|consensus
Probab=100.00 E-value=3e-48 Score=448.17 Aligned_cols=374 Identities=27% Similarity=0.426 Sum_probs=309.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.+..++..+++...+|+|.+++|+++ .++|+++.||||||||+||.|||++.+...| ....++
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~--------v~~LRa 218 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP--------VKRLRA 218 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC--------ccceEE
Confidence 34456888999999999999999996 3589999999999999999999999886643 245789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcC-----CcEEEeCHHHHHHHHHc-cccccCCcee
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-----CEIVIATPGRLIDVLEN-RYLVLNQCTY 1557 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~-----~~IiVaTP~rl~~~l~~-~~~~l~~v~l 1557 (1832)
|||+||++|+.|+++.|.+++...|+.|+.+.|..+...+...|... .||+|+|||||.+++.+ ..+.|+++.|
T Consensus 219 vVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lrf 298 (620)
T KOG0350|consen 219 VVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRF 298 (620)
T ss_pred EEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceE
Confidence 99999999999999999999999999999999999988877777653 48999999999999985 5689999999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCC-------CC--chhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKP-------DT--EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~-------~~--~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
+||||||+|++..|...+-.++..+....... .. ........++..+.....+.+.+.+|||+......+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 99999999999999988888877765331100 00 0011112222222223445678999999998888888
Q ss_pred HHhcCCCcEEEEcc----cCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHH----HcCC
Q psy6409 1629 RSYLRRPATVYIGS----VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE----KLGY 1700 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~----~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~----~~~~ 1700 (1832)
..-+..|..+.+.. ....+..+.+....+....+...+..++....-.++|+|++|..++..++..|. ...+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 88888886655442 223344455666666667788888999988888899999999999999998886 3467
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
.+..+.|+++...|...++.|..|+++||||||+++||||+.+|+.|||||+|.+..+|+||+||+||+|+.|.|+++++
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHh
Q psy6409 1781 KDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1781 ~~d~~~~~~l~~~l 1794 (1832)
..+...|.++....
T Consensus 539 ~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKT 552 (620)
T ss_pred cccchHHHHHHHHh
Confidence 99988887776544
No 72
>KOG0337|consensus
Probab=100.00 E-value=3e-48 Score=440.08 Aligned_cols=362 Identities=36% Similarity=0.568 Sum_probs=338.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.-.|..++|+..++++|.+-||..|||||+..+|.+++++|++..|-||||||.||++||++.+.... ..|.
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~ 91 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGL 91 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------cccc
Confidence 35799999999999999999999999999999999999999999999999999999999999876532 3578
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+++++.||++||.|..+..+.++...+.++++++||.+..++...+..++|||+|||+++..+.-.-.+.++.+.|||||
T Consensus 92 RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999988877767889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|+++||.+++..+++.+| ..+|+++||||+|..+-.+++..+.+|..+.+.
T Consensus 172 Eadrlfemgfqeql~e~l~rl~-------------------------~~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLP-------------------------ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCC-------------------------CcceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 9999999999999999999997 346999999999999999999999999999887
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
........++..++.+...+|..+|+.++... ...+++|||.++.+++.+...|...|+.+..+.|.|.+..|..-+..
T Consensus 227 vetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 227 VETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred hhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 77777888888889999999999999999765 45689999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
|..++..+||.||+++||+|||-.+.|||||+|.+..-|+||+||+.|+|..|.++.|+.+.+..++-+|.-.+-.
T Consensus 307 F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 307 FRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888766544
No 73
>KOG4284|consensus
Probab=100.00 E-value=7.1e-48 Score=452.93 Aligned_cols=353 Identities=31% Similarity=0.479 Sum_probs=322.9
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~ 1476 (1832)
..|.-...|+++.|...++..|+..+|..||++|..|||.++.+-|+||.|..|+|||++|.+.++..+. .
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~---------~ 89 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLD---------S 89 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcC---------c
Confidence 4455667899999999999999999999999999999999999999999999999999999888876542 2
Q ss_pred cCCCcEEEEEcCcHHHHHHHHHHHHHhcCC-CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTP-LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1477 ~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~-~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
....+.++|++||||||.|+.+.+.+++.. .|++|...+||.........+. .++|+|+|||++..++..+.++++++
T Consensus 90 ~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccce
Confidence 345788999999999999999999999864 5899999999998877666655 58899999999999999999999999
Q ss_pred eeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
+++|+||||.|++ ..|..++..|+..|| ..+|++.||||.|..+.+.+..|+.+
T Consensus 169 rlfVLDEADkL~~t~sfq~~In~ii~slP-------------------------~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTESFQDDINIIINSLP-------------------------QIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred eEEEeccHHhhhchhhHHHHHHHHHHhcc-------------------------hhheeeEEeccCchhHHHHHHHHhcc
Confidence 9999999999999 669999999999998 45799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcch--------hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEc
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSE--------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~--------~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lH 1706 (1832)
|..+.....+...-.|.|+++.... ..|...|..+++..+-..+||||+....|+.++.+|..-|+.|.++.
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 9999988877777788888766543 24778888899988889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|.|+|.+|..+++.++.-.++|||+||+.+||||-|+|++|||.|.|.+.++|.||||||||+|..|.+++|+.+...
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988743
No 74
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-46 Score=493.83 Aligned_cols=350 Identities=20% Similarity=0.268 Sum_probs=280.2
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.|++.+.++|.+.||..|+|+|.+||+.++.|+|++++||||||||+||++|++..+... .++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcC
Confidence 489999999999999999999999999999999999999999999999999999887542 3678999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccch
Q psy6409 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1489 treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH 1564 (1832)
|+|||.|+...++.++ ..++++..+.|+.+.. +...+..+++|||+||++|...+.. +...++++++|||||||
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999997 4578888888887754 4455667899999999998754322 22358899999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.|.+ .|+..+..++..+.. ........+|++++|||+++..+ ++..++..|..+ +....
T Consensus 168 ~~~g-~fg~~~~~il~rL~r------------------i~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~ 226 (742)
T TIGR03817 168 SYRG-VFGSHVALVLRRLRR------------------LCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDG 226 (742)
T ss_pred hccC-ccHHHHHHHHHHHHH------------------HHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCC
Confidence 9976 488888887776531 01112345799999999998865 566677766443 33333
Q ss_pred CCCcceEEEEEEcc-----------------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--------C
Q psy6409 1645 KPTERIEQIVYILS-----------------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--------G 1699 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~-----------------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--------~ 1699 (1832)
.+...... ..+.. ...+...+..++.. ..++||||+|++.|+.++..|... +
T Consensus 227 ~~~~~~~~-~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~ 303 (742)
T TIGR03817 227 SPRGARTV-ALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLA 303 (742)
T ss_pred CCcCceEE-EEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 33222222 11111 12344455555553 578999999999999999988764 5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEe
Q psy6409 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779 (1832)
Q Consensus 1700 ~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~ 1779 (1832)
..+..|||++++++|..+++.|++|++++||||+++++|||||++++||||++|.++.+|+||+|||||.|+.|.+++++
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC--ChhHHHHHHHHh
Q psy6409 1780 TKD--DSHLFYDLKQMM 1794 (1832)
Q Consensus 1780 ~~~--d~~~~~~l~~~l 1794 (1832)
.++ |..++..+...+
T Consensus 384 ~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALF 400 (742)
T ss_pred CCChHHHHHHhCHHHHh
Confidence 754 444455444433
No 75
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.8e-46 Score=478.24 Aligned_cols=340 Identities=23% Similarity=0.323 Sum_probs=265.5
Q ss_pred CcccCCCC--HHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 729 NWKEASLP--TEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 729 ~f~~~~L~--~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
.|...++| ..+...++. +||..++|+|.++|+.++.|+|+|+++|||+|||+||+||++.. +
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------------~ 500 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------------P 500 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------C
Confidence 46654444 445555554 79999999999999999999999999999999999999999841 3
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh------cCCceeecCHHHHH--HHHHcccc--
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR------LGCEIVIATPGRLI--DVLENRYL-- 875 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~------~~~~IlV~TP~rL~--d~l~~~~~-- 875 (1832)
+.+|||+|+++|+.++...+.. .|+.+..+.|+....++...+. ..++|||+||++|. +.+.+...
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5799999999999866655554 4899999999998777655443 35899999999986 22322211
Q ss_pred -ccCCceeEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 876 -VLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 876 -~l~~~~~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
....+.+|||||||++++|| |++.+..|-... ......++++||||++..+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr-----------------------~~fp~vPilALTATAT~~V~eD 633 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK-----------------------QKFPNIPVLALTATATASVKED 633 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHH-----------------------HhCCCCCeEEEEecCCHHHHHH
Confidence 23458999999999999998 889887652111 0112367899999999988875
Q ss_pred HHHhcCCC-cEEEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEE
Q psy6409 953 ARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029 (1832)
Q Consensus 953 ~~~~l~~p-~~v~~~~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~ 1029 (1832)
+...+... ..+.......++ +... .+... .....+..++... .....||||++++.|+.++..|...|+.+..
T Consensus 634 I~~~L~l~~~~vfr~Sf~RpN--L~y~--Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~ 709 (1195)
T PLN03137 634 VVQALGLVNCVVFRQSFNRPN--LWYS--VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAF 709 (1195)
T ss_pred HHHHcCCCCcEEeecccCccc--eEEE--EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeee
Confidence 55554432 223333333332 2222 22222 2234566666543 4568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1030 lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+||+|++.+|..+++.|..|+++|||||++++||||+|+|++||||++|.+++.|+||+|||||+|..|.|++|++..|.
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred hHHHH
Q psy6409 1110 HLFYD 1114 (1832)
Q Consensus 1110 ~~~~~ 1114 (1832)
..+..
T Consensus 790 ~~~~~ 794 (1195)
T PLN03137 790 IRVKH 794 (1195)
T ss_pred HHHHH
Confidence 44433
No 76
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.1e-44 Score=465.10 Aligned_cols=342 Identities=23% Similarity=0.309 Sum_probs=266.0
Q ss_pred CcccCCC--CHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1404 NWKEASL--PTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1404 ~~~e~~L--~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
.|...++ ...+...++. +||..|+|+|.++|+.++.|+|+|+++|||+|||+||++|++. .+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~---------------~~ 500 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI---------------CP 500 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH---------------cC
Confidence 4664443 4455555554 8999999999999999999999999999999999999999984 14
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh------cCCcEEEeCHHHHHH--HHHccc---
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR------LGCEIVIATPGRLID--VLENRY--- 1549 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~------~~~~IiVaTP~rl~~--~l~~~~--- 1549 (1832)
..+|||+|+++|+.++...+.. .|+.+..+.|+....++...+. ..++|||+||++|.. .+.+..
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 5799999999999876666655 3788999999988776654333 357999999999862 222221
Q ss_pred cccCCceeEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHH
Q psy6409 1550 LVLNQCTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627 (1832)
Q Consensus 1550 ~~l~~v~llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~ 1627 (1832)
.....+.+|||||||++++|| |++.+..+-.... .....++++||||++..+...
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~-----------------------~fp~vPilALTATAT~~V~eD 633 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ-----------------------KFPNIPVLALTATATASVKED 633 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHH-----------------------hCCCCCeEEEEecCCHHHHHH
Confidence 123458999999999999998 8888876522110 012357899999999988765
Q ss_pred HHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhh-HHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEE
Q psy6409 1628 ARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQD-KRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704 (1832)
Q Consensus 1628 ~~~~l~~p-~~v~i~~~~~~~~~i~q~~~~~~~~~-k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~ 1704 (1832)
+...+... ..+......+++ +. +..+.... ....+..++... ...+.||||+|++.|+.++..|...|+.+..
T Consensus 634 I~~~L~l~~~~vfr~Sf~RpN--L~--y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~ 709 (1195)
T PLN03137 634 VVQALGLVNCVVFRQSFNRPN--LW--YSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAF 709 (1195)
T ss_pred HHHHcCCCCcEEeecccCccc--eE--EEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeee
Confidence 55554422 223333333332 22 22222222 234566666543 4668999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1705 lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++.+|..+++.|..|+++|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|+...|.
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hHHHHHH
Q psy6409 1785 HLFYDLK 1791 (1832)
Q Consensus 1785 ~~~~~l~ 1791 (1832)
..+..+.
T Consensus 790 ~~~~~lI 796 (1195)
T PLN03137 790 IRVKHMI 796 (1195)
T ss_pred HHHHHHH
Confidence 5544443
No 77
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-45 Score=491.44 Aligned_cols=462 Identities=22% Similarity=0.251 Sum_probs=332.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.|++++||+.+++++.+.||.+|+|+|.+|++. ++.|+|++++||||||||++|.+|++..+. .+.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------------~~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------------RGGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------------cCCc
Confidence 478899999999999999999999999999998 678999999999999999999999998762 3668
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+|||+||++||.|++..++++. .+|+++..++|+...... ....++|+|+||++|..++.++...++++++||+||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999999999999999875 458999999998765443 223689999999999877776656688999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC--------
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-------- 959 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-------- 959 (1832)
||++.+.++++.++.++.++.. .....|++++|||+++. ..++. |+..
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~----------------------~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~r 201 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRR----------------------LNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWR 201 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHh----------------------cCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCC
Confidence 9999999999999999887631 11347999999999863 34443 3321
Q ss_pred CcEEEEcccCCCCcc--eEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-------------
Q psy6409 960 PATVYIGSVGKPTER--IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1023 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~--i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------- 1023 (1832)
|..+..+........ -.+..... ........+.+.+. .++++||||++++.|+.++..|...
T Consensus 202 pv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 279 (737)
T PRK02362 202 PIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAEL 279 (737)
T ss_pred CCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 111111000000000 00000000 11223333444443 5678999999999999998887542
Q ss_pred -----------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC
Q psy6409 1024 -----------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD 1076 (1832)
Q Consensus 1024 -----------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d 1076 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||+ ||
T Consensus 280 ~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd 359 (737)
T PRK02362 280 AELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYD 359 (737)
T ss_pred HHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeec
Confidence 147899999999999999999999999999999999999999999999997 76
Q ss_pred -----CCCCHhHHHHHhcccccCCCC--cEEEEEecCCC------------------chH--HHHHHHHHhcCCcccccc
Q psy6409 1077 -----MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD------------------SHL--FYDLKQMMISSPVTGRAG 1129 (1832)
Q Consensus 1077 -----~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d------------------~~~--~~~l~~~l~~~~~~~~~~ 1129 (1832)
.|.+..+|+||+|||||+|.+ |.|++++...+ +.+ -..+.+++++++.++++.
T Consensus 360 ~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~ 439 (737)
T PRK02362 360 GGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFAR 439 (737)
T ss_pred CCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccC
Confidence 588999999999999999976 99999997642 111 124677888999999999
Q ss_pred cccccccccccCCchhHH----HHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccc
Q psy6409 1130 KEGLAVSFCTKDDSHLFY----DLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYD 1205 (1832)
Q Consensus 1130 ~~~~~v~~~~~~~~~~~~----~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1205 (1832)
+..++++|+..+...... .+.+.+.. .+.. +...+.+... ......
T Consensus 440 ~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~--------~l~~----L~~~~~i~~~------------------~~~~~~ 489 (737)
T PRK02362 440 TRDGLLEFLEATFYATQTDDTGRLERVVDD--------VLDF----LERNGMIEED------------------GETLEA 489 (737)
T ss_pred CHHHHHHHHHhChHHhhccchHHHHHHHHH--------HHHH----HHHCCCeeec------------------CCeEeE
Confidence 999999998654422111 01111100 0000 0001111000 011234
Q ss_pred cccCcccccccccCccc--ccccCCCc-cccchhHhhhhccCchhhhhhcccch-HHHHHH
Q psy6409 1206 RRFKRKKSPQCEAQSSR--FSACSLPR-SHKSSSLLSRYSEQDPEEKELNKDKE-REGEAI 1262 (1832)
Q Consensus 1206 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l 1262 (1832)
..+|+..+.+|..+.+. +..+.... ..+...+|...+.+.+|+.+.+|..| +.+..+
T Consensus 490 t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~ 550 (737)
T PRK02362 490 TELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEY 550 (737)
T ss_pred ChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHH
Confidence 56788888888877662 22222111 12456788888889999998877555 444443
No 78
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-44 Score=457.24 Aligned_cols=326 Identities=25% Similarity=0.333 Sum_probs=258.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+||..|+|+|.++|+.++.|+|++++||||||||++|++|++. .+..+|||+||++|+.|+...
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------------~~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------------SDGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------------cCCcEEEEecHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999973 145699999999999999888
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHH---HHh-cCCceeecCHHHHHHHH-Hcccc-ccCCceeEEEecchhhhcCC--C
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGF---RLR-LGCEIVIATPGRLIDVL-ENRYL-VLNQCTYIVLDEADRMIDMG--F 896 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~-~~~~IlV~TP~rL~d~l-~~~~~-~l~~~~~lViDEaH~l~d~g--f 896 (1832)
+..+ |+.+..+.|+....++.. .+. ...+|+|+||+++.... ....+ ....+++|||||||++++|| |
T Consensus 71 l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 71 LKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc
Confidence 8764 778888888877554332 222 34899999999985322 11122 56789999999999999987 7
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc--CCCcEEEEcccCCCCcc
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVGKPTER 974 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l--~~p~~v~~~~~~~~~~~ 974 (1832)
++.+..|..... ..+..+++++|||+++.+.......+ .+|..+ ......++
T Consensus 147 r~~~~~l~~l~~-----------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r~n-- 200 (470)
T TIGR00614 147 RPDYKALGSLKQ-----------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFDRPN-- 200 (470)
T ss_pred HHHHHHHHHHHH-----------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCC--
Confidence 787766532110 11246799999999998765554443 344433 23222222
Q ss_pred eEEEEEEcchhhHHHHHHHHHH-cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~-~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
+...+.. ........+..++. ...+..+||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 201 l~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~v 279 (470)
T TIGR00614 201 LYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQV 279 (470)
T ss_pred cEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcE
Confidence 2222211 11234556667665 345556799999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876666554
No 79
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.7e-45 Score=485.38 Aligned_cols=374 Identities=25% Similarity=0.335 Sum_probs=291.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.|++++||+.+++++...||..|+|+|.+|++. +++|+|++++||||||||++|++|++..+. .+.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------------~~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------------RGGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------------cCCc
Confidence 477889999999999999999999999999998 678999999999999999999999998763 2568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+|+++||.|++..|++++ .+|+++..++|+....... ...++|+|+||++|..+++++...++++++||+||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~~---l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDEW---LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCccccc---cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999999999999999875 4589999999998765432 23689999999999999987766789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||++.+.++++.++.++..+... ....|++++|||+++.. .+.. |+.... +..
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~----------------------~~~~qii~lSATl~n~~-~la~-wl~~~~---~~~ 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRL----------------------NPDLQVVALSATIGNAD-ELAD-WLDAEL---VDS 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhc----------------------CCCCcEEEEcccCCCHH-HHHH-HhCCCc---ccC
Confidence 99999889999999988776421 13479999999998753 3332 332111 000
Q ss_pred cCCCCcceEEEE-----------EEcc---hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----------
Q psy6409 1643 VGKPTERIEQIV-----------YILS---EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1698 (1832)
Q Consensus 1643 ~~~~~~~i~q~~-----------~~~~---~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~---------- 1698 (1832)
..++.......+ .... .......+.+.+. ..+++||||+|++.|+.++..|...
T Consensus 199 ~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~ 276 (737)
T PRK02362 199 EWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAER 276 (737)
T ss_pred CCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 011111000000 0011 1122233333333 5679999999999999998887542
Q ss_pred --------------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE---
Q psy6409 1699 --------------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN--- 1749 (1832)
Q Consensus 1699 --------------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~--- 1749 (1832)
..++++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||+
T Consensus 277 ~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~ 356 (737)
T PRK02362 277 AELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYR 356 (737)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecce
Confidence 247999999999999999999999999999999999999999999999997
Q ss_pred -eC-----CCCCHHHHHHHhcccccCCCc--cEEEEEeeCCC-h-hHHHHHH-HHhhcCCCCCC--ChhhcCCCCCcCCC
Q psy6409 1750 -YD-----MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD-S-HLFYDLK-QMMISSPVSTC--PPELLNHPDAQHKP 1816 (1832)
Q Consensus 1750 -~d-----~P~s~~~yiQRiGRaGR~g~~--G~ai~~~~~~d-~-~~~~~l~-~~l~~~~~~~~--~~~L~~h~~a~~~~ 1816 (1832)
|| .|.++.+|+||+|||||+|.. |.|++++...+ . .+|..+. ..+.+.+ |.+ +..|.+|.+|+|+.
T Consensus 357 ~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~-S~l~~~~~l~~~lla~I~~ 435 (737)
T PRK02362 357 RYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVR-SKLATEPALRTHVLSTIAS 435 (737)
T ss_pred eecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCcee-ecCCChhhHHHHHHHHHHh
Confidence 76 688999999999999998865 99999997753 2 2333333 2333443 555 45699999999999
Q ss_pred Ccccccc
Q psy6409 1817 GTVMVPK 1823 (1832)
Q Consensus 1817 gti~~~~ 1823 (1832)
|++.+++
T Consensus 436 ~~~~~~~ 442 (737)
T PRK02362 436 GFARTRD 442 (737)
T ss_pred CccCCHH
Confidence 9998654
No 80
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-43 Score=445.80 Aligned_cols=325 Identities=25% Similarity=0.331 Sum_probs=257.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+||..|+|+|.++|+.++.|+|++++||||||||+||++|++. .+..+|||+||++|+.|+...
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------------~~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------------SDGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------------cCCcEEEEecHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999973 245699999999999999988
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHH---Hh-hcCCcEEEeCHHHHHHHH-Hcccc-ccCCceeEEEccchhhhcCC--C
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVL-ENRYL-VLNQCTYIVLDEADRMIDMG--F 1571 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~---~l-~~~~~IiVaTP~rl~~~l-~~~~~-~l~~v~llViDEaH~ll~~g--f 1571 (1832)
+..+ |+.+..+.|+....+... .+ ...++|+++||+++.... ....+ ...++++|||||||++++|| |
T Consensus 71 l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~f 146 (470)
T TIGR00614 71 LKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDF 146 (470)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccccc
Confidence 8764 677888888877653322 12 234799999999975432 11112 56889999999999999987 7
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--CCCcEEEEcccCCCCcc
Q psy6409 1572 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVYIGSVGKPTER 1649 (1832)
Q Consensus 1572 ~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l--~~p~~v~i~~~~~~~~~ 1649 (1832)
++.+..+..... ..+..+++++|||+++.+.......+ ..|..+ ..+...++
T Consensus 147 r~~~~~l~~l~~-----------------------~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-~~s~~r~n-- 200 (470)
T TIGR00614 147 RPDYKALGSLKQ-----------------------KFPNVPIMALTATASPSVREDILRQLNLKNPQIF-CTSFDRPN-- 200 (470)
T ss_pred HHHHHHHHHHHH-----------------------HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE-eCCCCCCC--
Confidence 777766532211 01235799999999998765554443 344433 23333322
Q ss_pred eEEEEEEcchhhHHHHHHHHHH-hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~-~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
+...+... .......+..++. ......+||||+|++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++|
T Consensus 201 l~~~v~~~-~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~v 279 (470)
T TIGR00614 201 LYYEVRRK-TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQV 279 (470)
T ss_pred cEEEEEeC-CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222111 1134455666665 345567799999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
||||+++++|||+|+|++||||++|.|+++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887655544
No 81
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.7e-44 Score=473.54 Aligned_cols=452 Identities=19% Similarity=0.241 Sum_probs=327.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.|+++++++.+.+.+++.||.+|+|+|.+||+. ++.|+|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----------~~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----------EGGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----------cCCe
Confidence 578899999999999999999999999999996 7789999999999999999999999987632 3568
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+|||+|+++||.|+++.+..+. .+|+++..++|+....... ...++|+|+||++|..++.++...++++++||+||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcC
Confidence 9999999999999999998864 5789999999998754332 24689999999999887776666789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|.+.+.++++.++.++.+++ ...|++++|||+++ ...++. |+..+... .
T Consensus 147 ~H~l~~~~rg~~le~il~~l~-------------------------~~~qiI~lSATl~n-~~~la~-wl~~~~~~---~ 196 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHML-------------------------GRAQILGLSATVGN-AEELAE-WLNAELVV---S 196 (720)
T ss_pred cCccCCccchHHHHHHHHhcC-------------------------cCCcEEEEEccCCC-HHHHHH-HhCCcccc---C
Confidence 999999999999999988764 23689999999987 455665 44433211 1
Q ss_pred cCCCCcc----eEEEEEEcch-------hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH--------------
Q psy6409 968 VGKPTER----IEQIVYILSE-------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-------------- 1022 (1832)
Q Consensus 968 ~~~~~~~----i~q~~~~~~~-------~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~-------------- 1022 (1832)
...+... +.+.+..... ......+.+.+. .+.++||||++++.|+.++..|..
T Consensus 197 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 197 DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 1111111 1111111111 111223334444 457899999999999888766632
Q ss_pred -------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE-------cC
Q psy6409 1023 -------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YD 1076 (1832)
Q Consensus 1023 -------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~-------~d 1076 (1832)
...++.+|||+|++++|..+++.|++|.++|||||+++++|||+|++.+||. |+
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~ 354 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFG 354 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCC
Confidence 1346999999999999999999999999999999999999999999999993 56
Q ss_pred CCC-CHhHHHHHhcccccCC--CCcEEEEEecCCCc-hHH------------------HHHHHHHhcCCccccccccccc
Q psy6409 1077 MAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS-HLF------------------YDLKQMMISSPVTGRAGKEGLA 1134 (1832)
Q Consensus 1077 ~p~-s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~-~~~------------------~~l~~~l~~~~~~~~~~~~~~~ 1134 (1832)
+|. ++.+|+||+|||||.| ..|.|+++++.++. .++ ..+.+++++++..+.+.+..++
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~ 434 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKEL 434 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHH
Confidence 654 6789999999999976 45999999987542 111 2345677888888999999999
Q ss_pred ccccccCCchh----HHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCc
Q psy6409 1135 VSFCTKDDSHL----FYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKR 1210 (1832)
Q Consensus 1135 v~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1210 (1832)
++|++.+.... ++.+...+... + ..|.. .+.+.... .+....+.+|+
T Consensus 435 ~~~l~~Tf~~~~~~~~~~~~~~v~~~----l-~~L~~-------~~~i~~~~-----------------~~~~~~t~lG~ 485 (720)
T PRK00254 435 VNFLERTFYAHQRKDLYSLEEKAKEI----V-YFLLE-------NEFIDIDL-----------------EDRFIPLPLGI 485 (720)
T ss_pred HHHHHhCHHHHhhcChHhHHHHHHHH----H-HHHHH-------CCCeEEcC-----------------CCCEeeChHHH
Confidence 99987554321 11111111100 0 00100 00000000 01123455788
Q ss_pred ccccccccCccc--ccccCCC--ccccchhHhhhhccCchhhhhhcccch
Q psy6409 1211 KKSPQCEAQSSR--FSACSLP--RSHKSSSLLSRYSEQDPEEKELNKDKE 1256 (1832)
Q Consensus 1211 ~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 (1832)
..+.+|..+.+. +..+... ...+...+|+..+.+.+|+.+..|..|
T Consensus 486 ~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e 535 (720)
T PRK00254 486 RTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKE 535 (720)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhh
Confidence 888888877662 2112111 134567799999999999999887655
No 82
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8.1e-43 Score=453.98 Aligned_cols=334 Identities=23% Similarity=0.331 Sum_probs=264.8
Q ss_pred CCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
++....+.|++ +||..|+|+|.++|+.++.|+|+++++|||||||++|++|++.. +..+|||+|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisP 73 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSP 73 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEec
Confidence 33444555654 79999999999999999999999999999999999999999842 346999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHH---Hh-cCCceeecCHHHHHHHHHccccccCCceeEEEecch
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---LR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~---l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH 889 (1832)
+++|+.|+...+..+ |+.+.++.++....+.... +. ...+|+|+||++|........+...++++|||||||
T Consensus 74 l~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 74 LISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcc
Confidence 999999999988875 6778888888776554322 22 247899999999873222223445678999999999
Q ss_pred hhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh--cCCCcEEEE
Q psy6409 890 RMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY--LRRPATVYI 965 (1832)
Q Consensus 890 ~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~--l~~p~~v~~ 965 (1832)
++++|| |++.+..|.... ...+..+++++|||+++.+....... +.+|. +.+
T Consensus 150 ~i~~~G~~fr~~y~~L~~l~-----------------------~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~~ 205 (607)
T PRK11057 150 CISQWGHDFRPEYAALGQLR-----------------------QRFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQI 205 (607)
T ss_pred ccccccCcccHHHHHHHHHH-----------------------HhCCCCcEEEEecCCChhHHHHHHHHhCCCCeE-EEE
Confidence 999987 788776653211 01124679999999998876544333 33443 333
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.....++ +. +..+....+...+..++....+.++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.
T Consensus 206 ~~~~r~n--l~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~ 281 (607)
T PRK11057 206 SSFDRPN--IR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEA 281 (607)
T ss_pred CCCCCCc--ce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 3333322 21 1222333455667777777777899999999999999999999999999999999999999999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
|+.|.++|||||+++++|||+|+|++|||||+|.|.++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 282 F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred HHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999886554443
No 83
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.6e-43 Score=464.05 Aligned_cols=372 Identities=21% Similarity=0.258 Sum_probs=286.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.|.++++++.+.+.+++.||..|+|+|.++++. +++|+|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----------~~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----------EGGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----------cCCe
Confidence 467889999999999999999999999999996 7899999999999999999999999987643 3568
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+|||+|+++|+.|++..|..+. .+|+++..++|+....... ...++|+|+||++|..++......++++++||+||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE 146 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADE 146 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcC
Confidence 9999999999999999999864 4689999999998765432 24689999999999999887666789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|.+.+.++++.++.++..++ ...|++++|||+++. ..+.. |+..+.. ..
T Consensus 147 ~H~l~~~~rg~~le~il~~l~-------------------------~~~qiI~lSATl~n~-~~la~-wl~~~~~---~~ 196 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHML-------------------------GRAQILGLSATVGNA-EELAE-WLNAELV---VS 196 (720)
T ss_pred cCccCCccchHHHHHHHHhcC-------------------------cCCcEEEEEccCCCH-HHHHH-HhCCccc---cC
Confidence 999999899999999988774 236899999999874 44444 4443221 11
Q ss_pred cCCCCcc----eEEEEEEcch-------hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH--------------
Q psy6409 1643 VGKPTER----IEQIVYILSE-------QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-------------- 1697 (1832)
Q Consensus 1643 ~~~~~~~----i~q~~~~~~~-------~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~-------------- 1697 (1832)
..++... +.+.+..... ......+.+.+. ..+++||||+|++.|+.++..|..
T Consensus 197 ~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 197 DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 1122111 1111111111 111223334444 357899999999999988766632
Q ss_pred -------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE-------eC
Q psy6409 1698 -------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN-------YD 1751 (1832)
Q Consensus 1698 -------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~-------~d 1751 (1832)
...++++|||+|++++|..+++.|++|.++|||||+++++|||+|++.+||. ++
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~ 354 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFG 354 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCC
Confidence 2347999999999999999999999999999999999999999999999994 55
Q ss_pred CCC-CHHHHHHHhcccccCC--CccEEEEEeeCCCh-hHHHHHHH-HhhcCCCCC--CChhhcCCCCCcCCCCcccccc
Q psy6409 1752 MAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS-HLFYDLKQ-MMISSPVST--CPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1752 ~P~-s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~-~~~~~l~~-~l~~~~~~~--~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
+|. ++.+|+||+|||||.| ..|.+++|+...+. .++..+.. .+.+.. +. .++.|.+|.+++++.|++.+++
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~-s~l~~es~l~~~ll~~i~~~~~~~~~ 432 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLF-SMLSNESAFRSQVLALITNFGVSNFK 432 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhh-ccCCchHHHHHHHHHHHHhCCCCCHH
Confidence 544 5789999999999975 67999999987653 33333221 111111 22 3456889999999999987553
No 84
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.5e-42 Score=446.22 Aligned_cols=335 Identities=23% Similarity=0.328 Sum_probs=265.2
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1409 SLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1409 ~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
+++....+.|++ +||..|+|+|.++|+.++.|+|+++++|||||||+||++|++.. +..+|||+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVis 72 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVS 72 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEe
Confidence 344555566655 79999999999999999999999999999999999999999831 34699999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---hh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---LR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|+++|+.|+...++.+ |+.+.++.++.+....... +. ...+|+++||+++........+...++++||||||
T Consensus 73 Pl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 73 PLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEA 148 (607)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCc
Confidence 9999999999998875 6777778887766543221 22 24789999999987422222344567999999999
Q ss_pred hhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--CCCcEEE
Q psy6409 1564 DRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL--RRPATVY 1639 (1832)
Q Consensus 1564 H~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l--~~p~~v~ 1639 (1832)
|++.+|| |++.+..+..... ..+..+++++|||++..+.......+ .+|. +.
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~-----------------------~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~-~~ 204 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQ-----------------------RFPTLPFMALTATADDTTRQDIVRLLGLNDPL-IQ 204 (607)
T ss_pred cccccccCcccHHHHHHHHHHH-----------------------hCCCCcEEEEecCCChhHHHHHHHHhCCCCeE-EE
Confidence 9999987 7777765532211 11246799999999988765443333 3443 33
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.....++ + .+.......+...+..++......++||||+|+++|+.++..|...|+.+..+||+|++.+|..+++
T Consensus 205 ~~~~~r~n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 205 ISSFDRPN--I--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred ECCCCCCc--c--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 33333332 2 1222233344566777777777789999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
.|+.|+++|||||+++++|||+|+|++|||||+|.|+++|+||+|||||.|..|.|++|+++.|...+..+
T Consensus 281 ~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 281 AFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred HHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886655443
No 85
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.6e-42 Score=447.46 Aligned_cols=328 Identities=25% Similarity=0.386 Sum_probs=267.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.|++ +||.+++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++||+|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHH
Confidence 34544 89999999999999999999999999999999999999999731 346899999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH----hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l----~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g 895 (1832)
|+...++.+ |+.+..+.|+.+..+....+ ....+|+++||++|........+....+++|||||||++.+||
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999988875 78888888888766543322 2358999999999975444444566789999999999999987
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC--CCcEEEEcccCCC
Q psy6409 896 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKP 971 (1832)
Q Consensus 896 --f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~--~p~~v~~~~~~~~ 971 (1832)
|++.+..|..... ..+..+++++|||+++.+.......+. ++.. .+.....+
T Consensus 144 ~~frp~y~~l~~l~~-----------------------~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ 199 (591)
T TIGR01389 144 HDFRPEYQRLGSLAE-----------------------RFPQVPRIALTATADAETRQDIRELLRLADANE-FITSFDRP 199 (591)
T ss_pred CccHHHHHHHHHHHH-----------------------hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe-EecCCCCC
Confidence 8888877654321 011245999999999988766665554 3332 23322222
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 972 ~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
. + .+.......+...+.+.+....+.++||||++++.|+.+++.|...|+++..+||+|+.++|..+++.|.+|.+
T Consensus 200 n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~ 275 (591)
T TIGR01389 200 N--L--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV 275 (591)
T ss_pred C--c--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 2 2 22223344567778888877677899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
+|||||+++++|||+|+|++||||++|.|+++|+|++|||||.|..|.|++|++..|...+..+
T Consensus 276 ~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 276 KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999886655544
No 86
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.8e-41 Score=443.37 Aligned_cols=326 Identities=25% Similarity=0.392 Sum_probs=265.9
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1416 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1416 ~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
+.|++ +||.+|+|+|.++|+.++.|+|++++||||+|||+||++|++. .+..+|||+|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------------~~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------------LKGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------------cCCcEEEEcCCHHHHH
Confidence 34544 8999999999999999999999999999999999999999973 1346899999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---h-hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---L-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
|+...++.+ |+.+..+.++.+..+.... + ....+|+++||+++........+...++++|||||||++.+||
T Consensus 68 dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 68 DQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred HHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 999998885 6778888888876654322 2 2458999999999875444444566789999999999999887
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCcEEEEcccCCC
Q psy6409 1571 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKP 1646 (1832)
Q Consensus 1571 --f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~~v~i~~~~~~ 1646 (1832)
|++.+..+...... ....+++++|||++..+...+..++. .+.. .+.....+
T Consensus 144 ~~frp~y~~l~~l~~~-----------------------~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r~ 199 (591)
T TIGR01389 144 HDFRPEYQRLGSLAER-----------------------FPQVPRIALTATADAETRQDIRELLRLADANE-FITSFDRP 199 (591)
T ss_pred CccHHHHHHHHHHHHh-----------------------CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe-EecCCCCC
Confidence 88888776543321 01234899999999988766666554 3332 23333332
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1647 ~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
+ + .+.......+...+.+++......++||||+|++.|+.++..|...|+++..+||+|++++|..+++.|.+|++
T Consensus 200 n--l--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~ 275 (591)
T TIGR01389 200 N--L--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV 275 (591)
T ss_pred C--c--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 2 2 22233344566778888887777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
+|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+.
T Consensus 276 ~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~ 337 (591)
T TIGR01389 276 KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLK 337 (591)
T ss_pred cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887754443
No 87
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.6e-41 Score=455.92 Aligned_cols=345 Identities=23% Similarity=0.317 Sum_probs=260.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.+.+++ +|..|||+|.+|||.+++|+|+|++||||||||++|++|++..+...... .....++++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 67777777665 79999999999999999999999999999999999999999887542211 111357889999999
Q ss_pred hhHHHHHHHHHHH-------h----cCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--ccCCc
Q psy6409 815 RELAQQIEEETNK-------F----GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQC 880 (1832)
Q Consensus 815 reLa~Qi~~~~~~-------~----~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--~l~~~ 880 (1832)
++||.|++..+.. + +..+ ++++...+|+.+..++...+...++|+|+||++|..++....+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876552 2 2344 7889999999988877777778899999999999877765433 57899
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC-
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR- 959 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~- 959 (1832)
++|||||||.|.+..++..+..++.++... .....|++++|||+++ .+.++......
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l---------------------~~~~~q~IglSATl~~-~~~va~~L~~~~ 231 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEEL---------------------AGGEFVRIGLSATIEP-LEEVAKFLVGYE 231 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHh---------------------cCCCCeEEEEecccCC-HHHHHHHhcCcc
Confidence 999999999999988998888877765310 1235789999999986 34444333221
Q ss_pred ----CcE-EEEcccCCCCcceEEE-----EEEcch----hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--
Q psy6409 960 ----PAT-VYIGSVGKPTERIEQI-----VYILSE----QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-- 1023 (1832)
Q Consensus 960 ----p~~-v~~~~~~~~~~~i~q~-----~~~~~~----~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-- 1023 (1832)
+.. ..+.........+... ...... ......+.+++. ...++||||||+..|+.++..|...
T Consensus 232 ~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 232 DDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 211 1111111111111100 000111 112233344443 3468999999999999999999873
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC-CCCc
Q psy6409 1024 ----GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1098 (1832)
Q Consensus 1024 ----g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~-g~~G 1098 (1832)
+..+.+|||+|++++|..+++.|++|.++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~ 389 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVS 389 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999986 4445
Q ss_pred EEEEEecCC
Q psy6409 1099 LAVSFCTKD 1107 (1832)
Q Consensus 1099 ~ai~~~~~~ 1107 (1832)
.+++++...
T Consensus 390 ~g~ii~~~~ 398 (876)
T PRK13767 390 KGRIIVVDR 398 (876)
T ss_pred cEEEEEcCc
Confidence 555555543
No 88
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-40 Score=447.66 Aligned_cols=345 Identities=23% Similarity=0.313 Sum_probs=258.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
|++.+.+.++. +|..|||+|.+||+.+++|+|++++||||||||+||++|++..+...+.. .....+.++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 67777777665 79999999999999999999999999999999999999999887643211 111357889999999
Q ss_pred HHHHHHHHHHHHH-------h----cCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc--ccCCc
Q psy6409 1490 RELAQQIEEETNK-------F----GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQC 1555 (1832)
Q Consensus 1490 reLa~Qi~~~~~~-------~----~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~--~l~~v 1555 (1832)
++|+.|+++.+.. + +..+ ++++...+|+.+.......+...++|+|+||++|..++.+..+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876542 2 2334 7788999999998877667777899999999999888865443 57899
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-- 1633 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~-- 1633 (1832)
++|||||||.|.+..++..+..++.++... .....|++++|||+++. ..+......
T Consensus 174 ~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l---------------------~~~~~q~IglSATl~~~-~~va~~L~~~~ 231 (876)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEEL---------------------AGGEFVRIGLSATIEPL-EEVAKFLVGYE 231 (876)
T ss_pred CEEEEechhhhccCccHHHHHHHHHHHHHh---------------------cCCCCeEEEEecccCCH-HHHHHHhcCcc
Confidence 999999999999888888877776665311 02457899999999874 333322211
Q ss_pred ---CCcEEE-EcccCCCCcceEEEE-----EEcchh----hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--
Q psy6409 1634 ---RPATVY-IGSVGKPTERIEQIV-----YILSEQ----DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-- 1698 (1832)
Q Consensus 1634 ---~p~~v~-i~~~~~~~~~i~q~~-----~~~~~~----~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-- 1698 (1832)
.+..+. +.........+.... ...... .....+..++. ..+++||||||+..|+.++..|...
T Consensus 232 ~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 232 DDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 121111 111110110111000 001111 11233333343 3468999999999999999999873
Q ss_pred ----CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-CCcc
Q psy6409 1699 ----GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1773 (1832)
Q Consensus 1699 ----~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g~~G 1773 (1832)
+.++..|||+|++++|..+++.|++|+++|||||+++++|||+|+|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~ 389 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVS 389 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999986 4445
Q ss_pred EEEEEeeCC
Q psy6409 1774 LAVSFCTKD 1782 (1832)
Q Consensus 1774 ~ai~~~~~~ 1782 (1832)
.+++++...
T Consensus 390 ~g~ii~~~~ 398 (876)
T PRK13767 390 KGRIIVVDR 398 (876)
T ss_pred cEEEEEcCc
Confidence 565555543
No 89
>KOG0329|consensus
Probab=100.00 E-value=4.2e-43 Score=373.24 Aligned_cols=323 Identities=32% Similarity=0.578 Sum_probs=282.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
--+.|.++-|.|+++.+|-..||+.|+.+|.++||.+.-|-|++..|..|.|||.+|+|.-|+.| +.....
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqi---------epv~g~ 110 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI---------EPVDGQ 110 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhc---------CCCCCe
Confidence 34568888899999999999999999999999999999999999999999999999999998765 233446
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lV 884 (1832)
..+|++|.|||||.||.++..+|.+.+ ++++...+||.+.......+++.++|+|+|||+++.++.++.+.|++++..|
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFv 190 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFV 190 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceee
Confidence 789999999999999999999998876 5899999999999998889988999999999999999999999999999999
Q ss_pred Eecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 885 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 885 iDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
+||||.|++ .+.+.+++.|....| ...|+++||||++..+...++.|+.+|..+
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp-------------------------~~KQvmmfsatlskeiRpvC~kFmQdPmEi 245 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCHKFMQDPMEI 245 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCc-------------------------ccceeeeeeeecchhhHHHHHhhhcCchhh
Confidence 999999886 356778888887776 347999999999999999999999999999
Q ss_pred EEcccCC-CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 964 YIGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 964 ~~~~~~~-~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~i 1042 (1832)
+++.... ....++|++..+.+..|...+.++|....-.+++||+.+... | +
T Consensus 246 ~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~------- 297 (387)
T KOG0329|consen 246 FVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S------- 297 (387)
T ss_pred hccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h-------
Confidence 9887654 345577788888888888888888887777889999988654 0 0
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHH
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQ 1117 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~ 1117 (1832)
| ..+ ||||++++||+||..|+.|||||+|.+..+|+||+|||||.|..|.+|+|++.. +...+..+.+
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqd 366 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQD 366 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhH
Confidence 2 223 899999999999999999999999999999999999999999999999999976 4455555544
No 90
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-41 Score=447.08 Aligned_cols=373 Identities=20% Similarity=0.231 Sum_probs=282.1
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v 1483 (1832)
.|.+++|++.+++.+...+|. |+|+|.++++.+.+|+|++++||||||||++|.++++..+.. +.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCcE
Confidence 366788999999999999996 999999999999999999999999999999999999877632 5679
Q ss_pred EEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1484 LiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
|||+|+++||.|+++.|.++. .+|+++...+|+...... ....++|+|+||+++..++.++...++++++||+|||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred EEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999999999999999999864 578899999998765433 2246899999999999999888777999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|++.+.++++.++.++..+... ....|++++|||+++. .++.. |+..+.. ...
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~----------------------~~~~riI~lSATl~n~-~~la~-wl~~~~~---~~~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYV----------------------NPDARILALSATVSNA-NELAQ-WLNASLI---KSN 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhc----------------------CcCCcEEEEeCccCCH-HHHHH-HhCCCcc---CCC
Confidence 9999888999999888765421 1347899999999875 44443 4432211 111
Q ss_pred CCCCcceEEEE----EEcchh-hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHc------------------
Q psy6409 1644 GKPTERIEQIV----YILSEQ-DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL------------------ 1698 (1832)
Q Consensus 1644 ~~~~~~i~q~~----~~~~~~-~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~------------------ 1698 (1832)
..+........ ...... .....+..++.. ...+++||||++++.|+.++..|...
T Consensus 198 ~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 277 (674)
T PRK01172 198 FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYD 277 (674)
T ss_pred CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence 11111100000 001000 011112223322 24678999999999999999888653
Q ss_pred -------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC---------CCCHHHHHHH
Q psy6409 1699 -------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM---------AKSIEDYTHR 1762 (1832)
Q Consensus 1699 -------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~---------P~s~~~yiQR 1762 (1832)
..++++|||+|++++|..+++.|++|.++|||||+++++|||+|+.. ||+++. |.++.+|.||
T Consensus 278 ~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm 356 (674)
T PRK01172 278 DSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQM 356 (674)
T ss_pred HHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHH
Confidence 24689999999999999999999999999999999999999999865 444443 5589999999
Q ss_pred hcccccCCC--ccEEEEEeeCCC-hhHHHHHH-HHhhcCCCCCCChhhcCCCC--CcCCCCccccc
Q psy6409 1763 IGRTGRAGK--EGLAVSFCTKDD-SHLFYDLK-QMMISSPVSTCPPELLNHPD--AQHKPGTVMVP 1822 (1832)
Q Consensus 1763 iGRaGR~g~--~G~ai~~~~~~d-~~~~~~l~-~~l~~~~~~~~~~~L~~h~~--a~~~~gti~~~ 1822 (1832)
+|||||.|. .|.+++|+...+ ...+.++. ..+.+.+ |.+...+..+.+ +++..|++.++
T Consensus 357 ~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~-S~l~~~~~~~~~~l~~i~~g~~~~~ 421 (674)
T PRK01172 357 IGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI-SYMGSQRKVRFNTLAAISMGLASSM 421 (674)
T ss_pred hhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee-ecCCCcccHHHHHHHHHHhcccCCH
Confidence 999999884 678888877654 44444443 3344443 566655556655 89999988754
No 91
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.4e-40 Score=426.47 Aligned_cols=318 Identities=20% Similarity=0.218 Sum_probs=251.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE-EccchhHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII-MAPTRELAQQIEE 823 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~gr-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li-laPtreLa~Qi~~ 823 (1832)
.||. |||||.++||.++.|+ +++++||||||||.+|+++++.. ......++.|| ++|||+||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~----------~~~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV----------EIGAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc----------cccccccceEEEeCchHHHHHHHHH
Confidence 5998 9999999999999998 57778999999999776555521 01123455555 7799999999999
Q ss_pred HHHHhcCCC-----------------------CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-----
Q psy6409 824 ETNKFGTPL-----------------------GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----- 875 (1832)
Q Consensus 824 ~~~~~~~~~-----------------------~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----- 875 (1832)
.+.++++.+ ++++..++||.+...|+..+..+++|||||+ |++.++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccc
Confidence 999988755 4889999999999999999999999999995 66655554
Q ss_pred -----------ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec
Q psy6409 876 -----------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944 (1832)
Q Consensus 876 -----------~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT 944 (1832)
.++++++||||||| ++++|...+..|+..+... .....+|+++||||
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp--------------------~~~rprQtLLFSAT 214 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP--------------------PDFLPLRVVELTAT 214 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC--------------------cccccceEEEEecC
Confidence 27889999999999 7899999999999865200 00123699999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH---HcCCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l---~~~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
+|..+..++..++.+|..+.+.........+.+. +.+....+...+...+ .....+++||||||++.|+.+++.|.
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~ 293 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP 293 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH
Confidence 9998888888888888766655444444455554 3334444443333322 12355789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-----HHHHHHhC----CC-------CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1022 KLGYNACTLHGGKGQEQRE-----LALNSLKG----GS-------KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~-----~il~~F~~----G~-------~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
..++ ..+||+|++.+|. .+++.|++ |. ..|||||+++++||||+. ++||++.+| .++|+
T Consensus 294 ~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyI 368 (844)
T TIGR02621 294 KEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQ 368 (844)
T ss_pred hcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHH
Confidence 8876 8999999999999 88999987 54 689999999999999986 889998776 68999
Q ss_pred HHhcccccCCCC-cEEEEEecC
Q psy6409 1086 HRIGRTGRAGKE-GLAVSFCTK 1106 (1832)
Q Consensus 1086 Qr~GRaGR~g~~-G~ai~~~~~ 1106 (1832)
||+||+||.|.. |.++++++.
T Consensus 369 QRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 369 QRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHhcccCCCCCCCCceEEEEee
Confidence 999999999986 445777655
No 92
>KOG0329|consensus
Probab=100.00 E-value=4.7e-42 Score=365.25 Aligned_cols=334 Identities=31% Similarity=0.551 Sum_probs=287.1
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|.++-|.|++++++-..||.+|+.+|.++||...-|-|+++.|..|.|||.+|+++.|+.+. .......
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---------pv~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---------PVDGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---------CCCCeEE
Confidence 4566777999999999999999999999999999999999999999999999999999886542 2334567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
+|++|+|||||.|+.++..+|.+.+ ++++...+||.++......+.+.++|+|+|||+++.+.+++.++++++..+|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 9999999999999999999998776 588999999999988888888889999999999999999999999999999999
Q ss_pred cchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1562 EADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1562 EaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
|||.|+++ ..+..++.|....| ...|+++||||+++.+...++.++.+|..+++
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp-------------------------~~KQvmmfsatlskeiRpvC~kFmQdPmEi~v 247 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCHKFMQDPMEIFV 247 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCc-------------------------ccceeeeeeeecchhhHHHHHhhhcCchhhhc
Confidence 99998864 45667777776665 45799999999999999999999999999888
Q ss_pred cccCC-CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1641 GSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1641 ~~~~~-~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
..... ....++|+|..+.+..|...+.++|....-.+++||+.|... | +
T Consensus 248 DdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~--------- 297 (387)
T KOG0329|consen 248 DDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S--------- 297 (387)
T ss_pred cchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h---------
Confidence 76543 445677888888899999999999988878899999998655 0 0
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1799 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1799 (1832)
| ..+ ||||++++||+||..++.|||||+|.+..+|+||+|||||.|..|.|++|+...+....-.-.+.-+..++
T Consensus 298 -f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i 372 (387)
T KOG0329|consen 298 -F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNI 372 (387)
T ss_pred -h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccH
Confidence 2 122 89999999999999999999999999999999999999999999999999998754444344445555666
Q ss_pred CCCChh
Q psy6409 1800 STCPPE 1805 (1832)
Q Consensus 1800 ~~~~~~ 1805 (1832)
+.+|.+
T Consensus 373 ~eLpde 378 (387)
T KOG0329|consen 373 KELPDE 378 (387)
T ss_pred hhcCcc
Confidence 777766
No 93
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-40 Score=440.59 Aligned_cols=367 Identities=20% Similarity=0.270 Sum_probs=277.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
.|++++||+.+++.+...||. |+|+|.++++.+.+|+|++++||||||||++|.++++..+. .+.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~------------~~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL------------AGLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH------------hCCcE
Confidence 477899999999999999997 99999999999999999999999999999999999987653 25689
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++|+++||.|+++.+.++. .+|+++...+|+...... ....++|+|+||+++..++.+....++++++||+|||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred EEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999999999999999999864 578999999998764332 2246899999999998777776667899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|++.+.++++.++.++..+... ....|++++|||+++ ...++. |+..+.. ...
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~----------------------~~~~riI~lSATl~n-~~~la~-wl~~~~~---~~~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYV----------------------NPDARILALSATVSN-ANELAQ-WLNASLI---KSN 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhc----------------------CcCCcEEEEeCccCC-HHHHHH-HhCCCcc---CCC
Confidence 9999999999999988765311 134789999999987 455655 4433221 111
Q ss_pred CCCCcceEEEEE-----Ecc-hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc-----------------
Q psy6409 969 GKPTERIEQIVY-----ILS-EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----------------- 1023 (1832)
Q Consensus 969 ~~~~~~i~q~~~-----~~~-~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~----------------- 1023 (1832)
..+.+ +...+. ... .......+..++.. ..++++||||++++.|+.++..|...
T Consensus 198 ~r~vp-l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 276 (674)
T PRK01172 198 FRPVP-LKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVY 276 (674)
T ss_pred CCCCC-eEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 11111 111000 110 00011112222222 24678999999999999999888653
Q ss_pred --------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC---------CCCHhHHHH
Q psy6409 1024 --------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM---------AKSIEDYTH 1086 (1832)
Q Consensus 1024 --------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~---------p~s~~~yvQ 1086 (1832)
..++.+|||+|++++|..+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.|
T Consensus 277 ~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Q 355 (674)
T PRK01172 277 DDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQ 355 (674)
T ss_pred cHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHH
Confidence 13588999999999999999999999999999999999999999975555 332 568899999
Q ss_pred HhcccccCCC--CcEEEEEecCCCc-hHHHH------------------HHHHHhcCCcccccccccccccccccC
Q psy6409 1087 RIGRTGRAGK--EGLAVSFCTKDDS-HLFYD------------------LKQMMISSPVTGRAGKEGLAVSFCTKD 1141 (1832)
Q Consensus 1087 r~GRaGR~g~--~G~ai~~~~~~d~-~~~~~------------------l~~~l~~~~~~~~~~~~~~~v~~~~~~ 1141 (1832)
|+|||||.|. .|.+++++...+. ..+.. +..++.+++..+.+.+..++++|++.+
T Consensus 356 m~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~t 431 (674)
T PRK01172 356 MIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNET 431 (674)
T ss_pred HhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhh
Confidence 9999999985 4778888765432 11111 111234677778888888888887543
No 94
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9e-39 Score=423.20 Aligned_cols=319 Identities=21% Similarity=0.216 Sum_probs=250.6
Q ss_pred HHHHHH-HHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 738 EILEII-EKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 738 ~l~~~l-~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.+++.+ ..++| +|||+|.+||+.++.+ .|+++|||||||||.+|++|++..+. .+++++|
T Consensus 439 ~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------------~g~qvlv 505 (926)
T TIGR00580 439 EWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------------DGKQVAV 505 (926)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------------hCCeEEE
Confidence 344444 55799 5999999999999975 79999999999999999999987652 3578999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HHhc-CCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|++..|++++..+++++..++|+.+..++.. .+.. .++||||||..+ .+.+.+.++++||||
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 9999999999999999998889999999999887544332 3334 489999999432 345678999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+|++ +......+..++ ...|+++||||+++....++...+.++..+...
T Consensus 581 Eahrf-----gv~~~~~L~~~~-------------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~ 630 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELR-------------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATP 630 (926)
T ss_pred ccccc-----chhHHHHHHhcC-------------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecC
Confidence 99974 223333333332 347899999998776666666666666655443
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.... ..+.+.+.......-...+...+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++
T Consensus 631 p~~R--~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~ 706 (926)
T TIGR00580 631 PEDR--LPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVML 706 (926)
T ss_pred CCCc--cceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHH
Confidence 2221 224444332222211222333332 4578999999999999999999985 789999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.|++|+++|||||+++++|||+|++++||++++|. +..+|+||+||+||.|+.|.|++|+.+.+
T Consensus 707 ~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 707 EFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred HHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 99999999999999999999999999999999976 68899999999999999999999997653
No 95
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.1e-39 Score=412.17 Aligned_cols=318 Identities=20% Similarity=0.213 Sum_probs=249.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE-EEEcCcHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v-LiLaPtreLa~Qi~~ 1498 (1832)
.||. |||||.++++.++.|+ ++++.||||||||.+|.++++... .....++. +|++|||+||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~----------~~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE----------IGAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc----------ccccccceEEEeCchHHHHHHHHH
Confidence 5897 9999999999999998 577789999999997765554211 11234444 557799999999999
Q ss_pred HHHHhcCCC-----------------------CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-----
Q psy6409 1499 ETNKFGTPL-----------------------GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----- 1550 (1832)
Q Consensus 1499 ~~~~~~~~~-----------------------g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~----- 1550 (1832)
.+.++++.+ ++++..++||.+.+.++..+..+++|||+|+ +++.++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccc
Confidence 999988755 4889999999999999999989999999995 45555444
Q ss_pred -----------ccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc
Q psy6409 1551 -----------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619 (1832)
Q Consensus 1551 -----------~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT 1619 (1832)
.+.++.+||||||| ++++|.+.+..|+..+... ....++|+++||||
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp--------------------~~~rprQtLLFSAT 214 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP--------------------PDFLPLRVVELTAT 214 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC--------------------cccccceEEEEecC
Confidence 27889999999999 6789999999999865200 00123699999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH---HhCCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1620 l~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l---~~~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
++..+..+...++.++..+.+.........+.+++ ......+...++..+ .....+++||||||+..|+.++..|.
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~ 293 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP 293 (844)
T ss_pred CCccHHHHHHHHccCCceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH
Confidence 99988888878887776665544434444555543 333444443333322 12345789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-----HHHHHhhC----CC-------CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHH
Q psy6409 1697 KLGYNACTLHGGKGQEQRE-----LALNSLKG----GS-------KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~-----~il~~F~~----g~-------~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yi 1760 (1832)
..++ ..+||+|++.+|. .+++.|++ |+ ..|||||+++++||||+. ++||++..| +++|+
T Consensus 294 ~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyI 368 (844)
T TIGR02621 294 KEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQ 368 (844)
T ss_pred hcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHH
Confidence 8876 8999999999999 88999987 54 789999999999999986 899998877 79999
Q ss_pred HHhcccccCCCc-cEEEEEeeC
Q psy6409 1761 HRIGRTGRAGKE-GLAVSFCTK 1781 (1832)
Q Consensus 1761 QRiGRaGR~g~~-G~ai~~~~~ 1781 (1832)
||+||+||+|.. +.++++++.
T Consensus 369 QRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 369 QRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHhcccCCCCCCCCceEEEEee
Confidence 999999999885 455777654
No 96
>KOG0952|consensus
Probab=100.00 E-value=1.2e-39 Score=404.30 Aligned_cols=371 Identities=23% Similarity=0.310 Sum_probs=292.0
Q ss_pred HcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
-++|..++.+|..++|.++. ..|+|||||||||||.+|+|.||+.+.+ +........++.++|||+|+++||.++++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~--~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKE--HEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHh--hccccccccCCceEEEEechHHHHHHHHH
Confidence 46888999999999999995 5799999999999999999999999876 22223334567899999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc---cccCCceeEEEccchhhhcCCChHHH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY---LVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~---~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
.|.+-+..+|+.|..++|+......... .++|||+||++|.-+-+.+. ..++.+.+|||||+| |+....++.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei~---~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvl 258 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEIA---DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVL 258 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHHH---hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchH
Confidence 9999888999999999999886655422 69999999999965544432 346789999999999 7777899999
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC--CcE-EEEcccCCCCcceEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PAT-VYIGSVGKPTERIEQ 1652 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~--p~~-v~i~~~~~~~~~i~q 1652 (1832)
+.|+.++.. .........++|++|||+|+..+ ++. ||+- +.. +.+...-+|. .+.+
T Consensus 259 EtiVaRtlr------------------~vessqs~IRivgLSATlPN~eD-vA~-fL~vn~~~glfsFd~~yRPv-pL~~ 317 (1230)
T KOG0952|consen 259 ETIVARTLR------------------LVESSQSMIRIVGLSATLPNYED-VAR-FLRVNPYAGLFSFDQRYRPV-PLTQ 317 (1230)
T ss_pred HHHHHHHHH------------------HHHhhhhheEEEEeeccCCCHHH-HHH-HhcCCCccceeeeccccccc-ceee
Confidence 999987631 11223345789999999998754 333 3332 233 3333333333 3444
Q ss_pred EEEEcchh---h--------HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-----------------------
Q psy6409 1653 IVYILSEQ---D--------KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----------------------- 1698 (1832)
Q Consensus 1653 ~~~~~~~~---~--------k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~----------------------- 1698 (1832)
.+.-.... . ....+.+.+. .+.+++|||.++..+...|+.|.+.
T Consensus 318 ~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 318 GFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred eEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 44433222 1 1222233332 4689999999999999999988653
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCCCC------CHHHHHHHhccccc
Q psy6409 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDMAK------SIEDYTHRIGRTGR 1768 (1832)
Q Consensus 1699 ~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~P~------s~~~yiQRiGRaGR 1768 (1832)
..+.++||+||...+|..+.+.|..|.++||+||.+++||+|+|+..++|. ||.-. .+-+.+|..|||||
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCC
Confidence 246789999999999999999999999999999999999999998766663 44433 57899999999999
Q ss_pred C--CCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1769 A--GKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1769 ~--g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
. ++.|.++++-+.+..++|..|..--.+.+ |.+-+.|.+|.||||.-|||.
T Consensus 476 PqFd~~G~giIiTt~dkl~~Y~sLl~~~~piE-S~~~~~L~dnLnAEi~LgTVt 528 (1230)
T KOG0952|consen 476 PQFDSSGEGIIITTRDKLDHYESLLTGQNPIE-SQLLPCLIDNLNAEISLGTVT 528 (1230)
T ss_pred CCCCCCceEEEEecccHHHHHHHHHcCCChhH-HHHHHHHHHhhhhheeeceee
Confidence 4 67899999999888999999988888887 899999999999999999998
No 97
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.6e-39 Score=408.80 Aligned_cols=341 Identities=27% Similarity=0.360 Sum_probs=280.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.+.+++. |.+|||.|.+|||.+.+|+|++++||||||||+++.||++..|.... ......+..+|||.|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 789999999988 99999999999999999999999999999999999999999987642 1123467899999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--ccCCceeEEEecchhhh
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--VLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--~l~~~~~lViDEaH~l~ 892 (1832)
|+|+..+...+...+..+|+.+...+|+++..+.....++.+||+|+||+.|.-++..+.+ .|.++++|||||.|.+.
T Consensus 83 kALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 9999999999999999999999999999998888888889999999999999777765433 68999999999999999
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC--CcEEEEcccCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PATVYIGSVGK 970 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~--p~~v~~~~~~~ 970 (1832)
+...+.++.--+.++.. +. ...|.|++|||..+ .+..++..... +..+.......
T Consensus 163 ~sKRG~~Lsl~LeRL~~-------------------l~---~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k 219 (814)
T COG1201 163 ESKRGVQLALSLERLRE-------------------LA---GDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK 219 (814)
T ss_pred ccccchhhhhhHHHHHh-------------------hC---cccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC
Confidence 88888888777766631 11 15899999999975 44466555544 33332222111
Q ss_pred CCcceEEEEEE-------cchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHH
Q psy6409 971 PTERIEQIVYI-------LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKGQEQRELA 1042 (1832)
Q Consensus 971 ~~~~i~q~~~~-------~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~i 1042 (1832)
...+.-.... .........+.++++.+. .+|||+||+..++.++..|...+ ..+..|||+++.+.|..+
T Consensus 220 -~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~v 296 (814)
T COG1201 220 -KLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEV 296 (814)
T ss_pred -cceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHH
Confidence 1111111100 011234566666666544 79999999999999999999887 899999999999999999
Q ss_pred HHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhccccc-CCCCcEEEEEecC
Q psy6409 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR-AGKEGLAVSFCTK 1106 (1832)
Q Consensus 1043 l~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR-~g~~G~ai~~~~~ 1106 (1832)
.+.|++|+.+++|||+.++-|||+.+|++||+|+.|+++..++||+||+|+ .|....++.+...
T Consensus 297 E~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 297 EERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999999999999997 4555677777776
No 98
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=404.93 Aligned_cols=342 Identities=27% Similarity=0.355 Sum_probs=278.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
-|++.+.+.++.. |..|||.|.+|||.+.+|+|++++||||||||+|+.||++..+.... ......+-.+|||.|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCc
Confidence 3789999999988 99999999999999999999999999999999999999999887642 112345789999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhh
Q psy6409 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1489 treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~l 1566 (1832)
.|+|..++...+...+..+|+.+..-+|+++..+....+.+.+||+|+|||.|.-++.... -.+.++.+||+||+|.+
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999999999999999999999998888888899999999999988886643 36899999999999999
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC--CcEEEEcccC
Q psy6409 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR--PATVYIGSVG 1644 (1832)
Q Consensus 1567 l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~--p~~v~i~~~~ 1644 (1832)
.+.-.+.++.--+.++... ....|.+++|||..+.. ..++..... +..+......
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l----------------------~~~~qRIGLSATV~~~~-~varfL~g~~~~~~Iv~~~~~ 218 (814)
T COG1201 162 AESKRGVQLALSLERLREL----------------------AGDFQRIGLSATVGPPE-EVAKFLVGFGDPCEIVDVSAA 218 (814)
T ss_pred hccccchhhhhhHHHHHhh----------------------CcccEEEeehhccCCHH-HHHHHhcCCCCceEEEEcccC
Confidence 8877777666655554311 12579999999998653 334333332 3333222221
Q ss_pred CCCcceEEEEEEcc--------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcC-CcEEEEcCCCCHHHHH
Q psy6409 1645 KPTERIEQIVYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~--------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~-~~v~~lHg~ls~~~R~ 1715 (1832)
. ...+.-. .+.. .......+.++++++ ..+|||+||+..|+.++..|...+ ..+..|||+++.+.|.
T Consensus 219 k-~~~i~v~-~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~ 294 (814)
T COG1201 219 K-KLEIKVI-SPVEDLIYDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRL 294 (814)
T ss_pred C-cceEEEE-ecCCccccccchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHH
Confidence 1 1111111 1111 123445566666655 489999999999999999999887 8999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccccc-CCCccEEEEEeeCC
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR-AGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR-~g~~G~ai~~~~~~ 1782 (1832)
.+++.|++|+.+++|||+.++.|||+.+|++||+|+.|.++..++||+||+|+ .|....++++..+.
T Consensus 295 ~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r 362 (814)
T COG1201 295 EVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDR 362 (814)
T ss_pred HHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999998 46668888887773
No 99
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-38 Score=392.59 Aligned_cols=334 Identities=28% Similarity=0.399 Sum_probs=271.9
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..|+. +||..++|-|.++|..+++|+|+|++.|||+||++||.||.+.. ...+|||.|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44544 69999999999999999999999999999999999999999842 236999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH---hcC-CceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l---~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g 895 (1832)
.+...+... |+.+.++.+..+..+....+ ..+ .++++-+|++|..--....+.-..+.++|||||||+++||
T Consensus 72 DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 72 DQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 999998886 78899999887776654433 333 7999999999975443344446678999999999999998
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccCCCC
Q psy6409 896 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPT 972 (1832)
Q Consensus 896 --f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~~~~ 972 (1832)
|+|.+..+...... -+...++.+|||.++.+..-+...|. +...+++.+...++
T Consensus 148 hdFRP~Y~~lg~l~~~-----------------------~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN 204 (590)
T COG0514 148 HDFRPDYRRLGRLRAG-----------------------LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN 204 (590)
T ss_pred CccCHhHHHHHHHHhh-----------------------CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch
Confidence 99999988665421 12467999999999988766655544 33345566666665
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
..++..... ....+...+.+ +......+.||||.|++.|+.+++.|...|+.+..+||||+.++|+.+.+.|..++++
T Consensus 205 i~~~v~~~~-~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 205 LALKVVEKG-EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred hhhhhhhcc-cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 443322211 22223332222 2245667799999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|+|||.++++|||.|+|.+|||||+|.|+++|+|.+|||||+|....|++|+.+.|......+.+.
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997776666543
No 100
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.8e-38 Score=414.88 Aligned_cols=317 Identities=21% Similarity=0.215 Sum_probs=249.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1414 ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
.......++| .|||+|.+||+.++.+ .|++++||||||||.+|++|++..+. .+.+++||+
T Consensus 441 ~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~------------~g~qvlvLv 507 (926)
T TIGR00580 441 QQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL------------DGKQVAVLV 507 (926)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH------------hCCeEEEEe
Confidence 3444456799 5999999999999975 79999999999999999999987653 267899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccc
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEa 1563 (1832)
||++||.|++..+++++..+++++..++|+.+..++.. .+.. .++|||+||..+ ...+.+.++++|||||+
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEE 582 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecc
Confidence 99999999999999998888999999998877554332 3333 489999999532 34567899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1564 H~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|++ +......+..++ ..+|+++||||+.+....+....+.++..+...+.
T Consensus 583 hrf-----gv~~~~~L~~~~-------------------------~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELR-------------------------TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred ccc-----chhHHHHHHhcC-------------------------CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 984 222233333332 34789999999887766666666666666554433
Q ss_pred CCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHh
Q psy6409 1644 GKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSL 1721 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~~F 1721 (1832)
+. ..+...+.......-...+...+. ..++++||||++.+++.++..|... ++.+..+||+|++.+|+.+++.|
T Consensus 633 ~R--~~V~t~v~~~~~~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F 708 (926)
T TIGR00580 633 DR--LPVRTFVMEYDPELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEF 708 (926)
T ss_pred Cc--cceEEEEEecCHHHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 22 124443333322211222222222 3578999999999999999999985 78999999999999999999999
Q ss_pred hCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1722 ~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
++|+++|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+.+.
T Consensus 709 ~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 709 YKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999999999999999999975 6889999999999999999999998764
No 101
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=8.1e-38 Score=422.51 Aligned_cols=318 Identities=21% Similarity=0.212 Sum_probs=252.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.+..+....++| .||++|.+||+.++.+ +|+++||+||||||.+|+++++..+ ..+++++|
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~------------~~g~qvlv 654 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV------------ENHKQVAV 654 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH------------HcCCeEEE
Confidence 355667788899 7999999999999987 8999999999999999999887643 24788999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh----cCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR----LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~----~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|++..|.+++..+++++..++|+.+..++...+. ..++||||||+.+ +..+.+.++++||||
T Consensus 655 LvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVID 729 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVD 729 (1147)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEe
Confidence 9999999999999999988888899999999988766654432 3589999999744 234567899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+|++ |+. ....+..++ ...|+++||||+++....++..++.++..+...
T Consensus 730 Eahrf---G~~--~~e~lk~l~-------------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~ 779 (1147)
T PRK10689 730 EEHRF---GVR--HKERIKAMR-------------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 (1147)
T ss_pred chhhc---chh--HHHHHHhcC-------------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecC
Confidence 99986 332 123333332 347999999998888888888888888766543
Q ss_pred ccCCCCcceEEEEEEcchh-hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il 1043 (1832)
.... ..+.+.+...... .+...+.++. .+++++||||+++.++.+++.|... ++++..+||+|++.+|..++
T Consensus 780 p~~r--~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im 854 (1147)
T PRK10689 780 PARR--LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 (1147)
T ss_pred CCCC--CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH
Confidence 3221 2344443333222 2222233332 3568999999999999999999987 78999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
..|++|+++|||||+++++|||+|+|++||..+.. .+..+|+||+||+||.|..|.|++++...
T Consensus 855 ~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 99999999999999999999999999999954442 25668999999999999999999888654
No 102
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-38 Score=387.94 Aligned_cols=334 Identities=27% Similarity=0.389 Sum_probs=270.5
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1416 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1416 ~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
..|+. +||..++|-|.++|..+++|+|+|++.|||+||++||.+|++.. ...+|||.|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44554 79999999999999999999999999999999999999999841 236999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---hc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
.+.+.++.. |+.+..+.+..+.++....+ .. ..+++.-+|+++..---...+.-..+.++|||||||+.+||
T Consensus 72 DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 72 DQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred HHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 999999886 68888898887776654332 22 37999999999875433334446688999999999999998
Q ss_pred --ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEEEEcccCCCC
Q psy6409 1571 --FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPT 1647 (1832)
Q Consensus 1571 --f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v~i~~~~~~~ 1647 (1832)
|+|.+..+....... ++..++.+|||.++.+..-+...|.- ...+.+.+.++++
T Consensus 148 hdFRP~Y~~lg~l~~~~-----------------------~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN 204 (590)
T COG0514 148 HDFRPDYRRLGRLRAGL-----------------------PNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN 204 (590)
T ss_pred CccCHhHHHHHHHHhhC-----------------------CCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch
Confidence 999999887654311 24579999999999887666555543 3345666666666
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1648 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
..+...... ....+...+.+ +......+.||||.|++.|+.++..|...|+.+..|||||+.++|+.+.+.|..+++.
T Consensus 205 i~~~v~~~~-~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~ 282 (590)
T COG0514 205 LALKVVEKG-EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK 282 (590)
T ss_pred hhhhhhhcc-cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc
Confidence 433222111 12222222222 1245677899999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|+|||.+++.|||-|+|.+|||||+|.|+++|+|-+|||||.|....|++|+.+.|..+...+.+.
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997665555443
No 103
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.9e-37 Score=401.28 Aligned_cols=317 Identities=23% Similarity=0.312 Sum_probs=239.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+...+..++| +||++|.+|++.+..+ .|++++||||||||++|++|++..+. .|.+++||+
T Consensus 251 ~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~lila 317 (681)
T PRK10917 251 LKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAALMA 317 (681)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEEe
Confidence 3445566788 6999999999999986 48999999999999999999987652 478899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++||.|+++.+++++..+|+++..++|+.+..+. ...+.. .++|+||||+.+.+ .+.+.++++|||||+
T Consensus 318 PT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 318 PTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQ 392 (681)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEech
Confidence 999999999999999999999999999999985443 334444 49999999998743 346789999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|++.. .....+... ....++++||||+.+....+.. ..+.....+...
T Consensus 393 Hrfg~-----~qr~~l~~~-------------------------~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~ 440 (681)
T PRK10917 393 HRFGV-----EQRLALREK-------------------------GENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDEL 440 (681)
T ss_pred hhhhH-----HHHHHHHhc-------------------------CCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecC
Confidence 97531 112222111 1236899999998665443333 222222222222
Q ss_pred CCCCcceEEEEEEcchhhHH-HHHHHHHHcCCCCCEEEEEcccc--------hHHHHHHHHHHc--CCcEEEEcCCCCHH
Q psy6409 969 GKPTERIEQIVYILSEQDKR-KKLMEVLNRGVKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGKGQE 1037 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~k~-~~L~~~l~~~~~~~vIVFv~s~~--------~~~~l~~~L~~~--g~~v~~lhg~~~~~ 1037 (1832)
......+...+.......+. ..+...+ ..+.+++|||+..+ .++.+++.|... ++.+..+||+|++.
T Consensus 441 p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 441 PPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred CCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHH
Confidence 12122344333322222221 2232333 24568999999654 456677888765 57899999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
+|..+++.|++|+++|||||+++++|||+|++++||+|++|. +...|.||+||+||.|..|.|+++++..
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 999999999999999999999999999999999999999997 6788999999999999999999999643
No 104
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.9e-37 Score=412.97 Aligned_cols=319 Identities=21% Similarity=0.209 Sum_probs=252.7
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEE
Q psy6409 1411 PTEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484 (1832)
Q Consensus 1411 ~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vL 1484 (1832)
.++..+....++| .||++|.+||+.++.+ +|++++|+||||||.+|+++++..+. .+.+|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvl 653 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVA 653 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEE
Confidence 3455677788999 7999999999999987 89999999999999999988876542 478899
Q ss_pred EEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---h-cCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---R-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1485 iLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
||+||++||.|++..+++++..+++++..++|+.+..++...+ . ..++|||+||+.+ +..+.+.++++|||
T Consensus 654 vLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVI 728 (1147)
T PRK10689 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIV 728 (1147)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEE
Confidence 9999999999999999998777888998899988876655433 2 3589999999743 23456789999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||+|++ |+. ....+..++ ..+|+++||||+++....++...+.++..+..
T Consensus 729 DEahrf---G~~--~~e~lk~l~-------------------------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~ 778 (1147)
T PRK10689 729 DEEHRF---GVR--HKERIKAMR-------------------------ADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 (1147)
T ss_pred echhhc---chh--HHHHHHhcC-------------------------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEec
Confidence 999986 332 122333332 45789999999988888888778888877665
Q ss_pred cccCCCCcceEEEEEEcchh-hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~-~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~i 1717 (1832)
.+... ..+.+.+...... .+...+..+. ..++++||||++..++.++..|... ++++..+||+|++.+|..+
T Consensus 779 ~p~~r--~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 779 PPARR--LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 (1147)
T ss_pred CCCCC--CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHH
Confidence 43322 2344444333222 2222222332 3468999999999999999999987 7899999999999999999
Q ss_pred HHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1718 l~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+..|++|+++|||||+++++|||+|++++||..+.. .+..+|+||+||+||.|+.|.|++++.+.
T Consensus 854 m~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999999999999999999955432 25668999999999999999999887654
No 105
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.9e-37 Score=416.87 Aligned_cols=312 Identities=24% Similarity=0.282 Sum_probs=230.4
Q ss_pred EEecCCChHHHHHHHHHHHHHhhchhhh-hccccCCCcEEEEEccchhHHHHHHHHHHHhc------------CCCCCeE
Q psy6409 770 GVAETGSGKTLAFLLPLLVWIQSLPKIA-RMEDADQGPYAIIMAPTRELAQQIEEETNKFG------------TPLGIRT 836 (1832)
Q Consensus 770 v~apTGSGKTla~llpil~~i~~~~~~~-~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~------------~~~~i~v 836 (1832)
|+||||||||++|.||+|..+...+... .......+.++|||+|+++|+.|+.+.++..+ ..+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998876432100 00011346899999999999999999887521 2357999
Q ss_pred EEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 837 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 837 ~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
...+|+.+..++...++..++|||+||++|..+|.++. ..++++++|||||+|.|.+..++.++..++.++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l----- 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL----- 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-----
Confidence 99999999888777777789999999999988876543 468999999999999999887888888777766310
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC-CCcEEEEcccCCCCcceEEEEEEcchhhH-------
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYILSEQDK------- 987 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~-~p~~v~~~~~~~~~~~i~q~~~~~~~~~k------- 987 (1832)
.....|+|+||||+++ .+.++..+.. .|..+. .........+...+ .+....+
T Consensus 156 ----------------~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~v-p~~d~~~~~~~~~~ 216 (1490)
T PRK09751 156 ----------------LHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVV-NPPAMRHPQIRIVV-PVANMDDVSSVASG 216 (1490)
T ss_pred ----------------CCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEE-CCCCCcccceEEEE-ecCchhhccccccc
Confidence 1235799999999987 4566654433 344443 22222222222111 1111000
Q ss_pred ---------H-----HHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcC----------------------------
Q psy6409 988 ---------R-----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLG---------------------------- 1024 (1832)
Q Consensus 988 ---------~-----~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g---------------------------- 1024 (1832)
. .....++.. ....++||||||+..|+.++..|++..
T Consensus 217 ~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1490)
T PRK09751 217 TGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRV 296 (1490)
T ss_pred cccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcc
Confidence 0 001112221 235689999999999999999997641
Q ss_pred -----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC-CCCc
Q psy6409 1025 -----YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKEG 1098 (1832)
Q Consensus 1025 -----~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~-g~~G 1098 (1832)
+.+.+|||+|++++|..+++.|++|.++|||||+++++||||++|++||+|+.|.++.+|+||+|||||. |..+
T Consensus 297 ~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 297 QSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred ccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 1267899999999999999999999999999999999999999999999999999999999999999996 3334
Q ss_pred EEEEEec
Q psy6409 1099 LAVSFCT 1105 (1832)
Q Consensus 1099 ~ai~~~~ 1105 (1832)
.++++..
T Consensus 377 ~gli~p~ 383 (1490)
T PRK09751 377 KGLFFPR 383 (1490)
T ss_pred EEEEEeC
Confidence 5553333
No 106
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=404.58 Aligned_cols=369 Identities=24% Similarity=0.314 Sum_probs=278.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
.+++.+.+.++..|+.+++|-|+.++...+ +++|+|+|+|||||||+++++.|+..+.+ .+.++||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----------~~~k~vYiv 83 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----------GGGKVVYIV 83 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----------cCCcEEEEe
Confidence 367788999999999888887777776665 56999999999999999999999987743 267899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|+|+||.|+++.|+ ....+|++|...+|+........ .+++|+|+||++|-.++.+....+..+++|||||+|.+.
T Consensus 84 PlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l---~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 84 PLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred ChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhh---ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999999 44678999999999998665433 379999999999944444445567899999999999888
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE--EEEcccCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT--VYIGSVGK 970 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~--v~~~~~~~ 970 (1832)
|..+++.++.|+.++...+ ...|++++|||+|+. ..++...-.++.. +.+... .
T Consensus 160 d~~RG~~lE~iv~r~~~~~----------------------~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l-~ 215 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN----------------------ELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPL-R 215 (766)
T ss_pred CcccCceehhHHHHHHhhC----------------------cceEEEEEeeecCCH-HHHHHHhCCcccccCCCCccc-c
Confidence 8779999999998875221 237999999999984 5566655444431 111111 1
Q ss_pred CCcceEEEEEEcchhhH------HHHHHH-HHHc-CCCCCEEEEEcccchHHHHHHHHHHc-------------------
Q psy6409 971 PTERIEQIVYILSEQDK------RKKLME-VLNR-GVKKPVIIFVNQKKGADVLAKGLEKL------------------- 1023 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~k------~~~L~~-~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~------------------- 1023 (1832)
......+.+.......| ...++. ++.. ..++++||||++++.+...++.|...
T Consensus 216 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 216 RGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred cCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 12223333333332221 122222 2222 25679999999999999999988631
Q ss_pred ------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE----EcC-----
Q psy6409 1024 ------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYD----- 1076 (1832)
Q Consensus 1024 ------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d----- 1076 (1832)
-.++++||+||+.++|..+.+.|+.|.++|||||+++++|+|+|+-.+|| .|+
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCe
Confidence 13578899999999999999999999999999999999999999988888 577
Q ss_pred CCCCHhHHHHHhcccccCCCC--cEEEEEecCC-Cch-------------HHHHHHHHHhcCCccccccccccccccccc
Q psy6409 1077 MAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD-DSH-------------LFYDLKQMMISSPVTGRAGKEGLAVSFCTK 1140 (1832)
Q Consensus 1077 ~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~-d~~-------------~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~ 1140 (1832)
.+.++-+|+|++|||||+|.+ |.++++.+.. +.. +...|-...+.+..++.+.....++.|+..
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~ 455 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLEL 455 (766)
T ss_pred EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHH
Confidence 466899999999999999876 8888888443 222 222333334566677778888888888854
Q ss_pred C
Q psy6409 1141 D 1141 (1832)
Q Consensus 1141 ~ 1141 (1832)
.
T Consensus 456 ~ 456 (766)
T COG1204 456 T 456 (766)
T ss_pred H
Confidence 3
No 107
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.2e-36 Score=396.05 Aligned_cols=317 Identities=23% Similarity=0.300 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.+-..+..++| .||++|.+|++.+..+ .|++++||||||||++|++|++..+. .|.+++||
T Consensus 250 ~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~lil 316 (681)
T PRK10917 250 LLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAALM 316 (681)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEE
Confidence 34455567888 7999999999999876 48999999999999999999987653 37789999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++||.|++..+++++..+|+++..++|+.+..... ..+.. .++|+|+||+.+.+ .+.+.++++|||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 99999999999999999998999999999999864432 33444 49999999987743 34578999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|++.. .....+... ...+++++||||+.+....+......++..+...+
T Consensus 392 ~Hrfg~-----~qr~~l~~~-------------------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p 441 (681)
T PRK10917 392 QHRFGV-----EQRLALREK-------------------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP 441 (681)
T ss_pred hhhhhH-----HHHHHHHhc-------------------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC
Confidence 998621 111111111 12367999999987665443332212222222111
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECch--------hHHHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 1643 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEKL--GYNACTLHGGKG 1710 (1832)
Q Consensus 1643 ~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~--------~~a~~l~~~L~~~--~~~v~~lHg~ls 1710 (1832)
.+ ...+...+..... ...+.+.+.. ....+++|||+.+ ..+..+++.|... ++.+..+||+|+
T Consensus 442 ~~--r~~i~~~~~~~~~---~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 442 PG--RKPITTVVIPDSR---RDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred CC--CCCcEEEEeCccc---HHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 11 2223333332222 2223333322 2457899999954 4566778888765 578999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. ....|.||+||+||.|..|.|+++++..
T Consensus 517 ~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 517 PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 99999999999999999999999999999999999999999997 5788999999999999999999999643
No 108
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=9.1e-37 Score=413.14 Aligned_cols=325 Identities=27% Similarity=0.326 Sum_probs=252.3
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+++ .|+ +|+++|..++|.++.|+|++++||||||||+ |++|++.++. ..++++|||+||++||.
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~-----------~~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA-----------KKGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH-----------hcCCeEEEEeccHHHHH
Confidence 34433 477 8999999999999999999999999999996 6666665442 23789999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCch-----HHHHHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSR-----EEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~-----~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
|+++.++.++...++.+..++|+... .++...+.. +++|+|+|||+|.+++. .+....+++|||||||+|++
T Consensus 138 Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 138 QVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 99999999999889988888877542 223334443 58999999999998876 34566799999999999996
Q ss_pred -----------CCCh-HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcc-ccccceEEEEEecCChH-HHHHHHHhcCC
Q psy6409 894 -----------MGFE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPA-VERLARSYLRR 959 (1832)
Q Consensus 894 -----------~gf~-~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~q~v~~SATl~~~-v~~~~~~~l~~ 959 (1832)
+||. +++..++..++..... ....+....+...... .....|+++||||+++. +.. .++.+
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ 290 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRE 290 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhc
Confidence 7885 7899999888642210 1111112222222111 12368999999999864 332 23455
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccch---HHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~---~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
+..+.++.......++.+.+..+. .+...|.+++... +.++||||+++.. |+.+++.|...|+++..+||+|
T Consensus 291 ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-- 365 (1176)
T PRK09401 291 LLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-- 365 (1176)
T ss_pred cceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH--
Confidence 666777766666667777776554 5666777777654 3579999999888 9999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC------CHhHHHHHhccccc
Q psy6409 1037 EQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK------SIEDYTHRIGRTGR 1093 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~------s~~~yvQr~GRaGR 1093 (1832)
...++.|++|+++|||| ||+++||||+|+ |.+|||||+|+ ....|.||+||+..
T Consensus 366 ---~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 ---ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred ---HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 699999999999 89999999998 67889999999974
No 109
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-36 Score=411.14 Aligned_cols=312 Identities=25% Similarity=0.304 Sum_probs=229.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhCchhh-cccccCCCcEEEEEcCcHHHHHHHHHHHHHh-----------c-CCCCCeE
Q psy6409 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIA-RMEDADQGPYAIIMAPTRELAQQIEEETNKF-----------G-TPLGIRT 1511 (1832)
Q Consensus 1445 i~ApTGSGKTla~~lpil~~l~~~p~~~-~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~-----------~-~~~g~~v 1511 (1832)
|+||||||||+||.||++..+...+... .......+.++|||+|+++|+.|+++.++.. + ..+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999998776532100 0001134689999999999999999988742 1 2357899
Q ss_pred EEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc-cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 1512 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 1590 (1832)
Q Consensus 1512 ~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~-~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~ 1590 (1832)
...+|+.+..++...+.+.++|||+||++|..++.++. ..++++++|||||+|.|.+..++..+..++.++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l----- 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL----- 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-----
Confidence 99999999988776777789999999999999886543 468999999999999999877777776666655311
Q ss_pred CchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCcEEEEcccCCCCcceEEEEEEcchhhH------
Q psy6409 1591 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVYIGSVGKPTERIEQIVYILSEQDK------ 1662 (1832)
Q Consensus 1591 ~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~~v~i~~~~~~~~~i~q~~~~~~~~~k------ 1662 (1832)
.....|+|++|||+++. +.+.. |+. .|..+.. ........+... .......+
T Consensus 156 ----------------~~~~~QrIgLSATI~n~-eevA~-~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~ 215 (1490)
T PRK09751 156 ----------------LHTSAQRIGLSATVRSA-SDVAA-FLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVAS 215 (1490)
T ss_pred ----------------CCCCCeEEEEEeeCCCH-HHHHH-HhcCCCCEEEEC-CCCCcccceEEE-EecCchhhcccccc
Confidence 11457999999999884 55554 443 3444432 222222223221 11111000
Q ss_pred ---------------HHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHcC---------------------------
Q psy6409 1663 ---------------RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLG--------------------------- 1699 (1832)
Q Consensus 1663 ---------------~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~~--------------------------- 1699 (1832)
......++.. ....++||||||++.|+.++..|+...
T Consensus 216 ~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 216 GTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 0011122221 235789999999999999999997641
Q ss_pred ------CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-CCc
Q psy6409 1700 ------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-GKE 1772 (1832)
Q Consensus 1700 ------~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g~~ 1772 (1832)
+.+..|||+|++++|..+++.|++|++++||||+++++|||||+|++||+|+.|.++.+|+||+|||||. |..
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCc
Confidence 2267899999999999999999999999999999999999999999999999999999999999999995 444
Q ss_pred cEEEEEeeC
Q psy6409 1773 GLAVSFCTK 1781 (1832)
Q Consensus 1773 G~ai~~~~~ 1781 (1832)
+.++++...
T Consensus 376 s~gli~p~~ 384 (1490)
T PRK09751 376 SKGLFFPRT 384 (1490)
T ss_pred cEEEEEeCc
Confidence 556644443
No 110
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-36 Score=393.59 Aligned_cols=318 Identities=22% Similarity=0.315 Sum_probs=238.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
.+.+.+..++| +||++|.+||+.++.+ .+.+++||||||||++|++|++..+. .|.+++||
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvlil 290 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVALM 290 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 45667788999 7999999999999875 36899999999999999999997652 36789999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+||++||.|+++.+++++..+|+++..++|+....+. ...+.. .++|+|+||+.+.+ .+.+.++++|||||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDE 365 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDE 365 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEec
Confidence 9999999999999999999999999999999886553 233333 47999999998743 34678999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|++... +...+..... .....++++||||+.+....+.. ..+.....+..
T Consensus 366 aH~fg~~----qr~~l~~~~~-----------------------~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~ 416 (630)
T TIGR00643 366 QHRFGVE----QRKKLREKGQ-----------------------GGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDE 416 (630)
T ss_pred hhhccHH----HHHHHHHhcc-----------------------cCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeecc
Confidence 9975311 1111211110 00246899999997654433322 22211111111
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccc--------hHHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGKG 1035 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~--------~~~~l~~~L~~~--g~~v~~lhg~~~ 1035 (1832)
.......+...+. ....+ ..++..+.. ..+.+++|||+..+ .++.+++.|... ++.+..+||+|+
T Consensus 417 ~p~~r~~i~~~~~--~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~ 493 (630)
T TIGR00643 417 LPPGRKPITTVLI--KHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMK 493 (630)
T ss_pred CCCCCCceEEEEe--CcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence 1111122333222 22222 333433332 24578999998763 466777777653 688999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
+.+|..+++.|++|+++|||||+++++|||+|++++||+|++|. +...|.||+||+||.|..|.|++++.
T Consensus 494 ~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 494 SDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999999999997 68889999999999999999999994
No 111
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-36 Score=388.86 Aligned_cols=310 Identities=20% Similarity=0.206 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCChHHHH---------HHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLA---------FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 753 ~iQ~~ai~~il~grdvIv~apTGSGKTla---------~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.+|.++++.+++|+|+|++|+||||||.+ |++|.+..+... .....+.+++|++|||+||.|+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~------~~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI------DPNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc------ccccCCcEEEEECcHHHHHHHHHH
Confidence 47999999999999999999999999997 444444433211 112245789999999999999999
Q ss_pred HHHHhcCC---CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHH
Q psy6409 824 ETNKFGTP---LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 900 (1832)
Q Consensus 824 ~~~~~~~~---~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i 900 (1832)
.+.+.... .++.+...+||... .+......+.+|+|+|++.. ...++.+++|||||||.+..++ +.+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHH
Confidence 98875443 36778889999873 22222223689999998631 1258899999999999987654 333
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEE
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~ 980 (1832)
..++..++ ...+|+++||||+|..++.+ ..|+.+|..+.+.. .....+++.+.
T Consensus 311 L~llk~~~------------------------~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi 363 (675)
T PHA02653 311 IAVARKHI------------------------DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYV 363 (675)
T ss_pred HHHHHHhh------------------------hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEe
Confidence 33333221 11248999999999888877 57888888877653 22244555443
Q ss_pred Ecc----------hhhHHHHHHHHHHc---CCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHH
Q psy6409 981 ILS----------EQDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 981 ~~~----------~~~k~~~L~~~l~~---~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
... ...+ ..+...+.. ..++++||||+++.+|+.+++.|... ++.+..+||+|++. +.+++.
T Consensus 364 ~~~~~~~~~~~y~~~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ 440 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEK-KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEK 440 (675)
T ss_pred ecCcccccchhhhHHHH-HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHH
Confidence 221 1122 223333332 23468999999999999999999887 78999999999985 566777
Q ss_pred H-hCCCCcEEEecccccccCCCcCcCEEEEcC---CCC---------CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1046 L-KGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK---------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1046 F-~~G~~~VLVaTdv~~rGlDip~v~~VI~~d---~p~---------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
| ++|+.+||||||+|++|||||+|++||++| .|. |.++|+||+|||||. .+|.|+.|+++++.
T Consensus 441 ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 441 VYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 7 799999999999999999999999999999 565 889999999999999 67999999998874
No 112
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.1e-36 Score=416.55 Aligned_cols=344 Identities=21% Similarity=0.244 Sum_probs=260.5
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 738 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
++.+.+++ .|| +|+++|.+++|.+++|+|++++||||||||++++++++... ..++++|||+||++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------------~~g~~aLVl~PTre 133 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------------LKGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------------hcCCeEEEEECHHH
Confidence 45566665 799 69999999999999999999999999999996666655321 24678999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCeEEEEEcCCchHHHHH---HHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 817 LAQQIEEETNKFGTPL--GIRTVLVVGGLSREEQGF---RLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~--~i~v~~~~Gg~~~~~~~~---~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
||.|+...++.++..+ ++++..++||.+..++.. .+..+ ++|+|+||++|.+.+... ....+++|||||||+
T Consensus 134 La~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ 211 (1638)
T PRK14701 134 LVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECcee
Confidence 9999999999988765 567788999998776533 34444 899999999998876542 227799999999999
Q ss_pred hhc-----------CCChHHHHH----HHHhCCCCCCCCCCchhHHHHHHHHhhccccccce-EEEEEecCChHHHHHHH
Q psy6409 891 MID-----------MGFEPDVQK----ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLAR 954 (1832)
Q Consensus 891 l~d-----------~gf~~~i~~----Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q-~v~~SATl~~~v~~~~~ 954 (1832)
|++ +||.+++.. |+...+.....+. .+....+...........| ++++|||+++... ..
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~ 286 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDA---MEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RV 286 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchh---hhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HH
Confidence 987 589999875 4332111100000 1111111111111123344 6789999986422 12
Q ss_pred HhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccch---HHHHHHHHHHcCCcEEEEc
Q psy6409 955 SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~---~~~l~~~L~~~g~~v~~lh 1031 (1832)
.++.++..+.++.......++.+.+..+....+ ..|.+++... +..+||||++++. |+.+++.|...|+++..+|
T Consensus 287 ~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h 364 (1638)
T PRK14701 287 KLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVS 364 (1638)
T ss_pred HHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEec
Confidence 344677778777766666677777766655544 5677777654 5689999999886 4899999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEec----ccccccCCCcC-cCEEEEcCCCC---CHhHHHHHh-------------cc
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAK---SIEDYTHRI-------------GR 1090 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaT----dv~~rGlDip~-v~~VI~~d~p~---s~~~yvQr~-------------GR 1090 (1832)
|+ |..+++.|++|+++||||| ++++||||+|+ |.+|||||+|+ +++.|.|.. ||
T Consensus 365 ~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~ 439 (1638)
T PRK14701 365 AK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEE 439 (1638)
T ss_pred ch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhh
Confidence 95 8999999999999999999 59999999999 99999999999 888777766 99
Q ss_pred cccCCCCcEEEEEecCCC
Q psy6409 1091 TGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1091 aGR~g~~G~ai~~~~~~d 1108 (1832)
+||.|..+.++..+...+
T Consensus 440 a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 440 ELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred hcccCCcchhHHHhHHHH
Confidence 999998888875544444
No 113
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.8e-36 Score=404.71 Aligned_cols=306 Identities=28% Similarity=0.348 Sum_probs=235.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+ .|+|+|.+++|.++.|+|++++||||||||. |.+|++.++.. .++++|||+||++||.|+++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 577 8999999999999999999999999999996 55666544421 3788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcch-----HHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc------
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSR-----EEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID------ 1568 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~-----~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~------ 1568 (1832)
+.++...++.+..++|+... ..+...+. .+++|+|+||++|.+.+. .+....+++|||||||+|++
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchh
Confidence 99998888888877776542 22223344 358999999999998876 35566799999999999996
Q ss_pred -----CCCh-HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhcc-ccCcceEEEEEccCChH-HHHHHHHhcCCCcEEEE
Q psy6409 1569 -----MGFE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPA-VERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1569 -----~gf~-~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~q~v~~SATl~~~-~~~~~~~~l~~p~~v~i 1640 (1832)
.||. +.+..++..++..+.. .........+...+.. .....|+++||||+++. +.. .++..+..+.+
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 6785 6899999888742210 0001111111111111 12368999999999874 332 23445555666
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH---HHHHHHHHHHcCCcEEEEcCCCCHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~---a~~l~~~L~~~~~~v~~lHg~ls~~~R~~i 1717 (1832)
+.......++.+.+..+. .+...+..++.... ..+||||+++.. |+.++..|...|+.+..+||+| ...
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~ 368 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERK 368 (1176)
T ss_pred cCcccccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHH
Confidence 666555667777776654 56677888876553 589999999887 9999999999999999999999 234
Q ss_pred HHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC
Q psy6409 1718 LNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1754 (1832)
Q Consensus 1718 l~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~ 1754 (1832)
++.|++|+++|||| |++++||||+|+ |.+|||||+|.
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 59999999999999 699999999999 89999999996
No 114
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-35 Score=387.40 Aligned_cols=320 Identities=22% Similarity=0.319 Sum_probs=239.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
..+.+.+..++| .||++|.+|++.++.+ .+.+++||||||||++|++|++..+. .+.+++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvli 289 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVAL 289 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEE
Confidence 445567788999 7999999999999876 36899999999999999999987653 3678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
|+||++||.|+++.+++++..+|+++..++|+....... ..+.. .++|||+||+.+.+ .+.+.++++||||
T Consensus 290 laPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVID 364 (630)
T TIGR00643 290 MAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIID 364 (630)
T ss_pred ECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEe
Confidence 999999999999999999988999999999998866532 23333 47999999997743 3567899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|+|++.. .+...+..... ....+++++||||+.+....+.. ..+.....+.
T Consensus 365 EaH~fg~----~qr~~l~~~~~-----------------------~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~ 415 (630)
T TIGR00643 365 EQHRFGV----EQRKKLREKGQ-----------------------GGFTPHVLVMSATPIPRTLALTV--YGDLDTSIID 415 (630)
T ss_pred chhhccH----HHHHHHHHhcc-----------------------cCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeec
Confidence 9997531 11112222111 00246899999998665433322 1111111111
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECch--------hHHHHHHHHHHHc--CCcEEEEcCCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQK--------KGADVLAKGLEKL--GYNACTLHGGK 1709 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~--------~~a~~l~~~L~~~--~~~v~~lHg~l 1709 (1832)
........+...+. .... ...++..+... ...+++|||+.+ ..+..++..|... ++.+..+||+|
T Consensus 416 ~~p~~r~~i~~~~~--~~~~-~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 416 ELPPGRKPITTVLI--KHDE-KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred cCCCCCCceEEEEe--Ccch-HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 11111122322222 2222 23444444332 457899999876 4566777777753 78899999999
Q ss_pred CHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
++.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|..|.|++++..
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 999999999999999999999999999999999999999999987 688999999999999999999999943
No 115
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=394.24 Aligned_cols=371 Identities=24% Similarity=0.314 Sum_probs=273.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il-~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
.+++.+.+.++..|+...+|.|+.++...+ .++|+|+++|||||||+++++.|+..+.+ .+.++||||
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----------~~~k~vYiv 83 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----------GGGKVVYIV 83 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----------cCCcEEEEe
Confidence 478888899998999777777777776555 56999999999999999999999987754 267899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
|+++||.|.+++|+++ ..+|++|...+|+......... +++|||+|||+|..++++....+..+++|||||+|.+.
T Consensus 84 PlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~~l~---~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 84 PLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDERLA---RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred ChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchhhhc---cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 9999999999999944 5679999999999986654333 79999999999999999988889999999999999777
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE--EEEcccCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT--VYIGSVGK 1645 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~--v~i~~~~~ 1645 (1832)
+...++.++.|+..+...+ ...|++++|||+|+..+ ++.+.-.++.. +...+...
T Consensus 160 d~~RG~~lE~iv~r~~~~~----------------------~~~rivgLSATlpN~~e-vA~wL~a~~~~~~~rp~~l~~ 216 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN----------------------ELIRIVGLSATLPNAEE-VADWLNAKLVESDWRPVPLRR 216 (766)
T ss_pred CcccCceehhHHHHHHhhC----------------------cceEEEEEeeecCCHHH-HHHHhCCcccccCCCCccccc
Confidence 7779999999998876322 23799999999998754 44322222221 11111111
Q ss_pred CCcceEEEEEEcchhh-------HHHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc-------------------
Q psy6409 1646 PTERIEQIVYILSEQD-------KRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL------------------- 1698 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~-------k~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~------------------- 1698 (1832)
+... .+.+....... ....+..++.. ..++++||||+|++.+...++.|...
T Consensus 217 ~v~~-~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 217 GVPY-VGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred CCcc-ceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 1111 22222222111 12223333332 25679999999999999999888730
Q ss_pred ------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC-----
Q psy6409 1699 ------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD----- 1751 (1832)
Q Consensus 1699 ------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d----- 1751 (1832)
..++++||+||+..+|..+.+.|+.|+++|||||+++++|||+|+-.+||- |+
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCe
Confidence 246889999999999999999999999999999999999999998777773 66
Q ss_pred CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1752 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1752 ~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
.+.++-+|+||+|||||.| ..|.++++++..+...+.... +.... ...+-..|.+-.+++..-+++.
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~-~~~~~-~e~~~s~l~~~~~~~~~l~~v~ 444 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAEL-YIQSE-PEPIESKLGDELNLRTFLLGVI 444 (766)
T ss_pred EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHH-hhccC-cchHHHhhcccccchheEEEEE
Confidence 5668999999999999987 458888888655443332211 11111 1223444555556666666554
No 116
>KOG0349|consensus
Probab=100.00 E-value=4.8e-37 Score=346.98 Aligned_cols=290 Identities=29% Similarity=0.538 Sum_probs=237.0
Q ss_pred cEEEEEccchhHHHHHHHHHHHh---cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKF---GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~---~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
|.++|+-|.||||.|++..+++| .....++...++||.....|...+..+++|+|+||+|+.+.+..+.+.+.+|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 38999999999999999966655 444456777899999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHHHHhcCCCc
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRRPA 961 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~~~~l~~p~ 961 (1832)
+|+||||.++..|+-+.+..+...+|. +.+.....|.+++|||+.. .+..+....+.-|.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~-------------------~tsdg~rlq~~vCsatlh~feVkk~~ervmhfpt 427 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPH-------------------MTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPT 427 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchh-------------------hhcCCcccccceeeeEEeEEEeeehhhhhccCce
Confidence 999999999999999888888877763 2233456799999999843 34455666666677
Q ss_pred EEEEcccCCCCcceEEEEEEcchh------------------------------hHHHHHHH---------HHHcCCCCC
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSEQ------------------------------DKRKKLME---------VLNRGVKKP 1002 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~~------------------------------~k~~~L~~---------~l~~~~~~~ 1002 (1832)
.+........+..+.+.+..+... ........ .+..+...+
T Consensus 428 wVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdk 507 (725)
T KOG0349|consen 428 WVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDK 507 (725)
T ss_pred eEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCc
Confidence 777666665555555544332110 00011111 222334568
Q ss_pred EEEEEcccchHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC
Q psy6409 1003 VIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079 (1832)
Q Consensus 1003 vIVFv~s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~ 1079 (1832)
+||||.++..|+.|-+++.+.| +.+.++||+..+.+|...++.|+.+..+.|||||+++|||||-++-++||..+|.
T Consensus 508 aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd 587 (725)
T KOG0349|consen 508 AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD 587 (725)
T ss_pred eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc
Confidence 9999999999999999998875 7899999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHH
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~ 1114 (1832)
+...|+|||||.||+-+-|.||+++...-...++.
T Consensus 588 ~k~nyvhrigrvgraermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 588 DKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred ccchhhhhhhccchhhhcceeEEEeeccchheeeh
Confidence 99999999999999999999999998876666665
No 117
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7e-36 Score=392.27 Aligned_cols=301 Identities=19% Similarity=0.275 Sum_probs=234.3
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCC
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 834 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i 834 (1832)
.+.+..+..++++|++|+||||||++|.+|++... ..+.+++|++|||++|.|++..+. .++...|.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~------------~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP------------GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh------------ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34555666788999999999999999999998653 124689999999999999999885 56666788
Q ss_pred eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHHH-HHHHHhCCCCCC
Q psy6409 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDV-QKILEYMPVTNL 912 (1832)
Q Consensus 835 ~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~i-~~Il~~l~~~~~ 912 (1832)
.|++.+++.+. ....++|+|+|||+|++.+... ..++.+++||||||| ++++.+|.-.+ ..+...+
T Consensus 76 ~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~l----- 143 (819)
T TIGR01970 76 TVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSL----- 143 (819)
T ss_pred EEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhc-----
Confidence 88877776542 3346899999999999998764 479999999999999 57776654332 2233322
Q ss_pred CCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHH----
Q psy6409 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR---- 988 (1832)
Q Consensus 913 ~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~---- 988 (1832)
....|+|+||||++... + ..|+.++..+.+.... ..+++.+.......+.
T Consensus 144 --------------------r~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 144 --------------------REDLKILAMSATLDGER--L-SSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred --------------------CCCceEEEEeCCCCHHH--H-HHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHH
Confidence 23579999999998653 3 4566555555443322 1244444444333332
Q ss_pred -HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 989 -KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 989 -~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
..+..++.. ..+++||||+++.+++.+++.|.. .++.+..+||+|++++|..+++.|++|..+||||||++++||
T Consensus 198 ~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgI 276 (819)
T TIGR01970 198 SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSL 276 (819)
T ss_pred HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcc
Confidence 233444433 457899999999999999999987 478899999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1065 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1065 Dip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|||+|++|||+++|+ |.++|+||+|||||. ..|.||.|+++++
T Consensus 277 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 277 TIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred cccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 999999999999975 456799999999999 5799999999865
No 118
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.8e-35 Score=397.25 Aligned_cols=316 Identities=22% Similarity=0.297 Sum_probs=233.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
++.+.+.+.....|+++|+.++|.++.|+|++++||||||||+ |++|+..++.. .++++|||+||++|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHH
Confidence 4445555544457999999999999999999999999999997 77787765421 37899999999999
Q ss_pred HHHHHHHHHHhcCCCCCeEE---EEEcCCchHHHHH---HHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 818 AQQIEEETNKFGTPLGIRTV---LVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 818 a~Qi~~~~~~~~~~~~i~v~---~~~Gg~~~~~~~~---~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
|.|++..+..++..+++.+. .++||.+..++.. .+.. +++|||+||++|.+.+..- .. ++++|||||||+
T Consensus 134 a~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~ 210 (1171)
T TIGR01054 134 VIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDA 210 (1171)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHh
Confidence 99999999999887776643 4679888765432 3343 4999999999998877641 12 899999999999
Q ss_pred hhc-----------CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHHHHHHHhc
Q psy6409 891 MID-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVERLARSYL 957 (1832)
Q Consensus 891 l~d-----------~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~~~~~~~l 957 (1832)
|++ +||.++ +..++..+.................++.... .....++++|||| +|..+. ..++
T Consensus 211 ~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~li~~SAT~~p~~~~---~~l~ 286 (1171)
T TIGR01054 211 LLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP-GKKRGCLIVSSATGRPRGKR---AKLF 286 (1171)
T ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh-hccCcEEEEEeCCCCccccH---HHHc
Confidence 998 788874 7777665432111000011111111122211 1112246789999 565443 2345
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEccc---chHHHHHHHHHHcCCcEEEEcCCC
Q psy6409 958 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK---KGADVLAKGLEKLGYNACTLHGGK 1034 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~---~~~~~l~~~L~~~g~~v~~lhg~~ 1034 (1832)
.++..+.++.......++.+.+..... +...|.+++... +.++||||+++ +.|+.++..|...|+++..+||++
T Consensus 287 r~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 287 RELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATK 363 (1171)
T ss_pred ccccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCC
Confidence 566667777665556667776654433 245566776643 46799999999 999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC
Q psy6409 1035 GQEQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1079 (1832)
Q Consensus 1035 ~~~~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~ 1079 (1832)
++ .+++.|++|+++|||| ||+++||||+|+ |++|||||+|+
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 73 6899999999999999 599999999999 89999999874
No 119
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-35 Score=388.30 Aligned_cols=300 Identities=17% Similarity=0.274 Sum_probs=231.1
Q ss_pred HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCCe
Q psy6409 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIR 835 (1832)
Q Consensus 757 ~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i~ 835 (1832)
+.+..+.+++++|++||||||||++|.+|++... ....+++|++|||+||.|++..+. .++...|..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 4455566788999999999999999999998531 123489999999999999999985 556677888
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh-hhcCCCh-HHHHHHHHhCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFE-PDVQKILEYMPVTNLK 913 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~-l~d~gf~-~~i~~Il~~l~~~~~~ 913 (1832)
+++.+++.+.. ...++|+|+|||+|++++... ..++.+++|||||||. .++.++. ..+..++..+
T Consensus 80 VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l------ 146 (812)
T PRK11664 80 VGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGL------ 146 (812)
T ss_pred EEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC------
Confidence 88888876532 235789999999999988764 4799999999999996 3443321 1112222222
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH----
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK---- 989 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~---- 989 (1832)
....|+++||||++.. .+ ..|+.++..+.+.... ..+.+.+..+....+..
T Consensus 147 -------------------r~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~ 201 (812)
T PRK11664 147 -------------------RDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVA 201 (812)
T ss_pred -------------------CccceEEEEecCCCHH--HH-HHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHH
Confidence 2457999999999864 34 4566555555443221 22455544444443432
Q ss_pred -HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 990 -KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 990 -~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~---~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
.+..++. ...+.+||||+++.+++.+++.|.. .++.+..+||+|++.+|..++..|++|..+||||||++++|||
T Consensus 202 ~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLt 280 (812)
T PRK11664 202 RATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLT 280 (812)
T ss_pred HHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhccc
Confidence 3334443 3467899999999999999999987 5788999999999999999999999999999999999999999
Q ss_pred CcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1066 IKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1066 ip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
||+|++|||+++++ |.++|+||+|||||. ..|.||.|+++++
T Consensus 281 Ip~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 281 IEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 99999999988764 446899999999998 4799999999875
No 120
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=5.8e-35 Score=402.33 Aligned_cols=353 Identities=19% Similarity=0.221 Sum_probs=260.7
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1414 ILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1414 ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
..+.+++ +|| .|+++|.+++|.++.|+|++++||||||||++++++++... ..+.++|||+||++|
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------------~~g~~aLVl~PTreL 134 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------------LKGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------------hcCCeEEEEECHHHH
Confidence 3456665 799 69999999999999999999999999999997666555321 146789999999999
Q ss_pred HHHHHHHHHHhcCCC--CCeEEEEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1493 AQQIEEETNKFGTPL--GIRTVLVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1493 a~Qi~~~~~~~~~~~--g~~v~~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
+.|+++.++.++..+ +++++.++|+.+..++.. .+.. .++|||+||++|.+.+... ...++++|||||||+|
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceec
Confidence 999999999988765 467788899998776532 3444 4899999999998876542 2278999999999999
Q ss_pred hc-----------CCChHHHHH-HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcce-EEEEEccCChHHHHHHHHhcC
Q psy6409 1567 ID-----------MGFEPDVQK-ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLARSYLR 1633 (1832)
Q Consensus 1567 l~-----------~gf~~~l~~-Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q-~v~~SATl~~~~~~~~~~~l~ 1633 (1832)
++ .||.+++.. ++..++................+...........| ++++|||+++... . ..++.
T Consensus 213 l~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~ 290 (1638)
T PRK14701 213 LKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYR 290 (1638)
T ss_pred cccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhh
Confidence 87 588888864 33322110000000000111111111111123344 6789999986422 1 23446
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhH---HHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG---ADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~---a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
.+..+.++.......++.+.+.......+ ..+..++... ...+||||+++.. |+.++..|...|+.+..+||+
T Consensus 291 ~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 291 ELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred cCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 67777777665556677777766654444 5777888765 5689999999875 589999999999999999995
Q ss_pred HHHHHHHHHHhhCCCCcEEEEc----ccccccCCCCC-CCEEEEeCCCC---CHHHHHHHh-------------cccccC
Q psy6409 1711 QEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAK---SIEDYTHRI-------------GRTGRA 1769 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVAT----dvl~~GIDip~-v~~VI~~d~P~---s~~~yiQRi-------------GRaGR~ 1769 (1832)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. +++.|.|-. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8999999999999999999 58999999999 99999999999 888777766 999999
Q ss_pred CCccEEEEEeeCCChhHHHHH
Q psy6409 1770 GKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1770 g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
|..+.++......+..++..+
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHH
Confidence 988877755444444444433
No 121
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.2e-35 Score=366.32 Aligned_cols=343 Identities=22% Similarity=0.233 Sum_probs=253.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+|+|..++|.++.|+ |+.+.||+|||++|++|++... ..|+.++||+||++||.|.++.+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a------------l~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA------------LAGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh------------hcCCeEEEEcCcHHHHHHHHHHH
Confidence 565 79999999999999999 9999999999999999999653 24789999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-------------------------cccCC
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-------------------------LVLNQ 879 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-------------------------~~l~~ 879 (1832)
..+...+|+++++++||++.. ......+++|+|+|...| .|.|..+. .....
T Consensus 165 ~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 165 RPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 999999999999999998753 334456899999999877 35553321 12355
Q ss_pred ceeEEEecchhhh-cCC-----------------ChHHHHHHHHhCCC--------------------------------
Q psy6409 880 CTYIVLDEADRMI-DMG-----------------FEPDVQKILEYMPV-------------------------------- 909 (1832)
Q Consensus 880 ~~~lViDEaH~l~-d~g-----------------f~~~i~~Il~~l~~-------------------------------- 909 (1832)
+.+.||||||.++ |.. +...+..+...+..
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 7899999999754 211 11111112111110
Q ss_pred CCCCC------------------------------------------CCchhHHHHHHHHhhcc----------------
Q psy6409 910 TNLKP------------------------------------------DTEDAEDENKLLANYNS---------------- 931 (1832)
Q Consensus 910 ~~~~~------------------------------------------~~~~~~~~~~ll~~~~~---------------- 931 (1832)
..... .....+.+...+..-+.
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00000 00000001111100000
Q ss_pred --ccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC--CCCCEEEEE
Q psy6409 932 --KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFV 1007 (1832)
Q Consensus 932 --~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv 1007 (1832)
.+.+..+.+||||.+.....+...|..++..+..... ......+.++++....|...|.+.+... .+.++||||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1224578889999998888888888877654433222 1222334455667788898898888653 357899999
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---CcC-----EEEEcCCCC
Q psy6409 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAK 1079 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---~v~-----~VI~~d~p~ 1079 (1832)
+|++.++.++..|...|+++..+||.+. +|+..+..|+.+...|+||||+++||+||+ +|. +||+|++|.
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 9999999999999999999999999865 455555556666667999999999999999 776 999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+...|+||+|||||.|..|.+++|++.+|.
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999998774
No 122
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=344.27 Aligned_cols=341 Identities=20% Similarity=0.296 Sum_probs=277.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
..+++.+|+.+...|+..||+++.|+|.-|+.+.+ .|.|++|+++|+||||++.-|+-+..++ ..|.+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l-----------~~g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-----------SGGKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH-----------hCCCe
Confidence 34678899999999999999999999999999865 7999999999999999998887776543 35789
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH----HHHhcCCceeecCHHHHHHHHHccccccCCceeE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG----FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~----~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~l 883 (1832)
.|||+|..+||+|-+..|+..-.++|+.+..-+|-....... ......++|||+|.+-+ |++.+....+.++..|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGi-D~lLRtg~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGI-DYLLRTGKDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhH-HHHHHcCCcccccceE
Confidence 999999999999999999988899999998888865543332 12234589999999999 6655554789999999
Q ss_pred EEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
||||+|.+-|...++-+.-++.++.. -.+..|+|.+|||..+. +.+++.+-.+++..
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~----------------------l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y 399 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRY----------------------LFPGAQFIYLSATVGNP-EELAKKLGAKLVLY 399 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHH----------------------hCCCCeEEEEEeecCCh-HHHHHHhCCeeEee
Confidence 99999988887888888888776632 11358999999999774 44777665444332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--------CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035 (1832)
Q Consensus 964 ~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--------~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~ 1035 (1832)
. ..|.+.-.|.++.-.+.+|...+..+.+. +..+++|||++|+..|..++..|...|+.+.++|+||+
T Consensus 400 ~----~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~ 475 (830)
T COG1202 400 D----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLP 475 (830)
T ss_pred c----CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCc
Confidence 1 23333334445544577787777776642 45679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE---cCC-CCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN---YDM-AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~---~d~-p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
..+|..+...|.++.+.++|+|.+++.|+|+|+-.+|+. ++. --|+.+|.|+.|||||++.+ |++++++.+.-
T Consensus 476 y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 476 YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 999999999999999999999999999999998665541 222 23899999999999999876 99999998874
No 123
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=3.7e-34 Score=388.57 Aligned_cols=311 Identities=21% Similarity=0.291 Sum_probs=230.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+.+.......|+|+|..+++.++.|+|++++||||||||+ |.+|++.++.. .++++|||+||++||.|
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHHHHH
Confidence 4444433347999999999999999999999999999997 77777655432 36889999999999999
Q ss_pred HHHHHHHhcCCCCCeEE---EEECCcchHHHHH---Hhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1496 IEEETNKFGTPLGIRTV---LVVGGLSREEQGF---RLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~---~l~gg~~~~~~~~---~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
++..++.++...++.++ .++|+.+..++.. .+.. +++|||+||++|.+.+..- .. ++++|||||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhh
Confidence 99999999887776544 4678888765432 3333 4899999999998877641 12 899999999999998
Q ss_pred -----------CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcc--eEEEEEcc-CChHHHHHHHHhcC
Q psy6409 1569 -----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR--QTVMFTAT-MPPAVERLARSYLR 1633 (1832)
Q Consensus 1569 -----------~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--q~v~~SAT-l~~~~~~~~~~~l~ 1633 (1832)
+||.++ +..|+..+...+... .......+...+......+ +++++||| +|..+.. .++.
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r 287 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY---RALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFR 287 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccc---hHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcc
Confidence 678764 677765543211100 0111111111111212233 36779999 5654432 3455
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECch---hHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK---KGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~---~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
++..+.++.......++.+.+..... +...+.+++... ...+||||+++ +.|+.|+..|...|+++..+||+++
T Consensus 288 ~ll~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 288 ELLGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred cccceEecCccccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 56666676665556667776654433 245677777654 46799999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK 1754 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~ 1754 (1832)
+ .+++.|++|+++|||| |++++||||+|+ |++|||||+|.
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 6899999999999999 599999999999 89999998874
No 124
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-34 Score=336.27 Aligned_cols=320 Identities=25% Similarity=0.306 Sum_probs=237.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
.-+|+.||......++.+ |++++.|||-|||+++++.|..++... .+ ++|+|+||+.|+.|.+..|.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----------~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----------GG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----------CC-eEEEecCCchHHHHHHHHHHH
Confidence 347899999999888876 999999999999999999998887652 24 899999999999999999999
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH-HHHHHh
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV-QKILEY 1581 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l-~~Il~~ 1581 (1832)
+..-..-.++.++|...+++... .+....|+|+||+.+.+-+..+.+++.++.+|||||||+..+..-.-.+ ...+.
T Consensus 81 v~~ip~~~i~~ltGev~p~~R~~-~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~- 158 (542)
T COG1111 81 VTGIPEDEIAALTGEVRPEEREE-LWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR- 158 (542)
T ss_pred HhCCChhheeeecCCCChHHHHH-HHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-
Confidence 87655567889999999876543 4456889999999999999999999999999999999998654322222 21221
Q ss_pred CCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH---HHh---------------------------
Q psy6409 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA---RSY--------------------------- 1631 (1832)
Q Consensus 1582 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~---~~~--------------------------- 1631 (1832)
..+++.++++|||+....+.+. ...
T Consensus 159 -------------------------~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i 213 (542)
T COG1111 159 -------------------------SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI 213 (542)
T ss_pred -------------------------hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEE
Confidence 1234567777777643322211 100
Q ss_pred ----------------------c---CCCcEEEEccc-C--------------CCC-c-c-------------eE-----
Q psy6409 1632 ----------------------L---RRPATVYIGSV-G--------------KPT-E-R-------------IE----- 1651 (1832)
Q Consensus 1632 ----------------------l---~~p~~v~i~~~-~--------------~~~-~-~-------------i~----- 1651 (1832)
| .+-..+..... . ... . . +.
T Consensus 214 kV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~el 293 (542)
T COG1111 214 KVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALEL 293 (542)
T ss_pred eccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 0 000 0 0 00
Q ss_pred ---E------------------------------------------EEEEcchhhHHHHHHHHHHh----CCCCcEEEEE
Q psy6409 1652 ---Q------------------------------------------IVYILSEQDKRKKLMEVLNR----GVKKPVIIFV 1682 (1832)
Q Consensus 1652 ---q------------------------------------------~~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv 1682 (1832)
| .......+.|...+.+++.. ....++|||+
T Consensus 294 letqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT 373 (542)
T COG1111 294 LETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFT 373 (542)
T ss_pred HHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 00000112233444444432 3556899999
Q ss_pred CchhHHHHHHHHHHHcCCcEE-EEc--------CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNAC-TLH--------GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~-~lH--------g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
+.+.+|+.++..|...+..+. .+- .||+|.++.++++.|+.|+++|||||+++++|+|||+|++||.|++-
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpv 453 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPV 453 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCC
Confidence 999999999999999988775 332 47999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
.|...++||.|||||. ..|.++++++.+
T Consensus 454 pSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 454 PSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999996 789999999998
No 125
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.4e-34 Score=366.87 Aligned_cols=311 Identities=20% Similarity=0.211 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLA---------FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla---------~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
..+|.++++.+++|+++|++|+||||||.+ |++|.+..+... .....+..++|++||++||.|+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~------~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI------DPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc------ccccCCcEEEEECcHHHHHHHHH
Confidence 358999999999999999999999999987 344444333211 11224568999999999999999
Q ss_pred HHHHHhcCC---CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHH
Q psy6409 1498 EETNKFGTP---LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574 (1832)
Q Consensus 1498 ~~~~~~~~~---~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~ 1574 (1832)
..+.+.... .+..+...+||.+.. .........+|+|+|++.. ...++++++|||||||.+...+ +.
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--Dl 309 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DI 309 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hH
Confidence 998775433 356778889998732 2122223679999997621 1257889999999999987664 33
Q ss_pred HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~ 1654 (1832)
+..++..+. ...+|+++||||++..++.+ ..++.+|..+.+. +.....+++.+
T Consensus 310 lL~llk~~~------------------------~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~y 362 (675)
T PHA02653 310 IIAVARKHI------------------------DKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVY 362 (675)
T ss_pred HHHHHHHhh------------------------hhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEE
Confidence 433433221 02248999999999888776 5788888887764 33334556554
Q ss_pred EEcc----------hhhHHHHHHHHHHh---CCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 1655 YILS----------EQDKRKKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1655 ~~~~----------~~~k~~~l~~~l~~---~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
.... ...+. .+...+.. ...+.+||||+++..|+.++..|... ++.+..+||+|++. +++++
T Consensus 363 i~~~~~~~~~~~y~~~~k~-~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~ 439 (675)
T PHA02653 363 VKNKYNPKNKRAYIEEEKK-NIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILE 439 (675)
T ss_pred eecCcccccchhhhHHHHH-HHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHH
Confidence 3221 11222 23333332 23468999999999999999999887 78999999999985 56677
Q ss_pred Hh-hCCCCcEEEEcccccccCCCCCCCEEEEeC---CCC---------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1720 SL-KGGSKDILVATDVAGRGIDIKDVSMVINYD---MAK---------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1720 ~F-~~g~~~VLVATdvl~~GIDip~v~~VI~~d---~P~---------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.| ++|+.+|||||+++++|||||+|++||++| .|. |.++|+||+|||||. .+|.|+.|+++.+.
T Consensus 440 ~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 440 KVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred HHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 77 799999999999999999999999999998 665 889999999999999 78999999998764
No 126
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=340.41 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=276.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG-LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~i-l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..+++.+|+.+...|+..|+..+.|+|.-|+.+. ++|.|++++++|+||||++..++=+..+.. .|.+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----------~g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----------GGKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----------CCCe
Confidence 3567889999999999999999999999999875 589999999999999999999987765533 5888
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH----HHhhcCCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG----FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~----~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
.|||+|..+||+|-+..|+.--.++|+++.+-+|-.-..... ......+||||+|.+-+..+++.+ -.+.+++.|
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtV 342 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTV 342 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceE
Confidence 999999999999999999987788999998888765544332 122335899999999999988887 678999999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||+|.+-+...++-+.-++.++.. ..+..|++.+|||..+.. .++..+.-+++.+
T Consensus 343 VIDEiHtL~deERG~RLdGLI~RLr~----------------------l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y 399 (830)
T COG1202 343 VIDEIHTLEDEERGPRLDGLIGRLRY----------------------LFPGAQFIYLSATVGNPE-ELAKKLGAKLVLY 399 (830)
T ss_pred EeeeeeeccchhcccchhhHHHHHHH----------------------hCCCCeEEEEEeecCChH-HHHHHhCCeeEee
Confidence 99999988777777777777665532 224579999999998764 4555544443332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHh--------CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1639 ~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--------~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
..+|.+.-.|.+....+..|...+..+++. ...+++|||++|++.|..|+..|...|+.+..||+||+
T Consensus 400 ----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~ 475 (830)
T COG1202 400 ----DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLP 475 (830)
T ss_pred ----cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCc
Confidence 234444445566666677887777776642 25679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE---eCCCC-CHHHHHHHhcccccCC--CccEEEEEeeCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN---YDMAK-SIEDYTHRIGRTGRAG--KEGLAVSFCTKD 1782 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~---~d~P~-s~~~yiQRiGRaGR~g--~~G~ai~~~~~~ 1782 (1832)
..+|..+...|.++++.++|+|.+++.|||+|+-++|+- ++.-+ |+.+|.||.|||||.+ ..|++++++.+.
T Consensus 476 y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 476 YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999999999999999999999999997665542 22222 7899999999999987 459999999876
No 127
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-33 Score=330.77 Aligned_cols=322 Identities=24% Similarity=0.280 Sum_probs=238.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|+.||......++.+ |++++.|||-|||+++++.+..++.. ..+ ++|+|+||+.|+.|.+..|.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~----------~~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW----------FGG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh----------cCC-eEEEecCCchHHHHHHHHHH
Confidence 4567889999998888876 89999999999999999999887743 234 89999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-ChHHHHHHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILE 905 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g-f~~~i~~Il~ 905 (1832)
++..-..-.++.++|.....+.... +....|+|+||+.+.+-|..+.+++.++.+|||||||+-...- +-......+.
T Consensus 80 ~v~~ip~~~i~~ltGev~p~~R~~~-w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 80 KVTGIPEDEIAALTGEVRPEEREEL-WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HHhCCChhheeeecCCCChHHHHHH-HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 9976656678899998887665444 4478999999999999999999999999999999999865422 1111221221
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH---HhcCCCcEE-------------------
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR---SYLRRPATV------------------- 963 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~---~~l~~p~~v------------------- 963 (1832)
..+...++++|||.....+.+.. .+.-..+.+
T Consensus 159 --------------------------~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ 212 (542)
T COG1111 159 --------------------------SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEW 212 (542)
T ss_pred --------------------------hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEE
Confidence 22446789999996544433211 111000000
Q ss_pred --------------------------------EEcccCCC-------C-------cc-----------------eEE---
Q psy6409 964 --------------------------------YIGSVGKP-------T-------ER-----------------IEQ--- 977 (1832)
Q Consensus 964 --------------------------------~~~~~~~~-------~-------~~-----------------i~q--- 977 (1832)
..+..... . .. +.+
T Consensus 213 ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~e 292 (542)
T COG1111 213 IKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALE 292 (542)
T ss_pred EeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 00 000
Q ss_pred -----------------------------------------------EEEEcchhhHHHHHHHHHHc----CCCCCEEEE
Q psy6409 978 -----------------------------------------------IVYILSEQDKRKKLMEVLNR----GVKKPVIIF 1006 (1832)
Q Consensus 978 -----------------------------------------------~~~~~~~~~k~~~L~~~l~~----~~~~~vIVF 1006 (1832)
.......+.|+..+.+++.. ..+.++|||
T Consensus 293 lletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVF 372 (542)
T COG1111 293 LLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVF 372 (542)
T ss_pred HHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEE
Confidence 00000112233444444432 345689999
Q ss_pred EcccchHHHHHHHHHHcCCcEE-EEc--------CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC
Q psy6409 1007 VNQKKGADVLAKGLEKLGYNAC-TLH--------GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~~g~~v~-~lh--------g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
++.+.+|+.++.+|...+..+. .+- .||+|.++.++++.|+.|.++|||||+++++|||||+|++||.|++
T Consensus 373 T~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEp 452 (542)
T COG1111 373 TEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEP 452 (542)
T ss_pred ehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecC
Confidence 9999999999999999988775 333 4799999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
..|...++||.|||||. +.|.+++|++.++
T Consensus 453 vpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 453 VPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred CcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 99999999999999995 7799999999984
No 128
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-33 Score=356.31 Aligned_cols=343 Identities=22% Similarity=0.230 Sum_probs=253.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++.... .|+.|+||+||++||.|.+.++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------------~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------------AGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------------cCCeEEEEcCcHHHHHHHHHHH
Confidence 576 89999999999999999 99999999999999999996542 4788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-------------------------cccCC
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-------------------------LVLNQ 1554 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-------------------------~~l~~ 1554 (1832)
..++..+|+++++++|+.+... .....+++|+|+|...| .+.|+.+. .....
T Consensus 165 ~~l~~~lGlsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 165 RPLYEALGLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHHhhcCCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 9999999999999999987543 33456899999999887 45655432 12356
Q ss_pred ceeEEEccchhhh-cCC-----------------ChHHHHHHHHhCCCC-----------------------------CC
Q psy6409 1555 CTYIVLDEADRMI-DMG-----------------FEPDVQKILEYMPVT-----------------------------NL 1587 (1832)
Q Consensus 1555 v~llViDEaH~ll-~~g-----------------f~~~l~~Il~~l~~~-----------------------------~~ 1587 (1832)
+.+.||||||.++ |.. +......+...+... ..
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 7899999999643 110 111111222222100 00
Q ss_pred CCCCc---------------------------------------------hhhhHHHHHh---hhc--------------
Q psy6409 1588 KPDTE---------------------------------------------DAEDENKLLA---NYN-------------- 1605 (1832)
Q Consensus 1588 ~~~~~---------------------------------------------~~~~~~~l~~---~~~-------------- 1605 (1832)
..... +....-+.+. .+.
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00000 0000000000 000
Q ss_pred -cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEE
Q psy6409 1606 -SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFV 1682 (1832)
Q Consensus 1606 -~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv 1682 (1832)
.-..+..+.+||||.+....++...|..++..+...... .....+.+..+....|...|...+... ...|+||||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 011234667999999998888888888776554332221 122334455667788888998888653 357899999
Q ss_pred CchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---CCC-----EEEEeCCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAK 1754 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---~v~-----~VI~~d~P~ 1754 (1832)
+|+..++.++..|...|+++..+||.+.+ |+..+..|+.+...|+|||++++||+||+ +|. +||+|++|.
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 99999999999999999999999998654 45555556666667999999999999999 676 999999999
Q ss_pred CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1755 s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|...|+||+|||||.|+.|.+++|++..|.
T Consensus 559 s~r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 559 SARIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred CHHHHHHhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999999999998764
No 129
>KOG0923|consensus
Probab=100.00 E-value=6.4e-35 Score=346.13 Aligned_cols=331 Identities=17% Similarity=0.184 Sum_probs=260.3
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCe
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~ 835 (1832)
.+.+.++..++-+||.|.||||||. .||.+.+ .......|.++-|..|.|..|+.++.++.+ .+|++
T Consensus 271 dell~av~e~QVLiI~GeTGSGKTT--QiPQyL~--------EaGytk~gk~IgcTQPRRVAAmSVAaRVA~---EMgvk 337 (902)
T KOG0923|consen 271 DELLKAVKEHQVLIIVGETGSGKTT--QIPQYLY--------EAGYTKGGKKIGCTQPRRVAAMSVAARVAE---EMGVK 337 (902)
T ss_pred HHHHHHHHhCcEEEEEcCCCCCccc--cccHHHH--------hcccccCCceEeecCcchHHHHHHHHHHHH---HhCcc
Confidence 3344444445559999999999999 6776533 122344566799999999999998776543 23444
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
.+--+|.....+. .....+.|-++|.|+|+..+...+ +|..+++||||||| .+
T Consensus 338 LG~eVGYsIRFEd--cTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAH------------------------ER 390 (902)
T KOG0923|consen 338 LGHEVGYSIRFED--CTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAH------------------------ER 390 (902)
T ss_pred cccccceEEEecc--ccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhh------------------------hh
Confidence 4444444333332 223467899999999998887766 79999999999999 56
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l 995 (1832)
+.+++.+++++..+...++...+++.|||| +.++|..+|-..|++..++........++......+-+..+..+++++
T Consensus 391 TL~TDILfgLvKDIar~RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH 468 (902)
T KOG0923|consen 391 TLHTDILFGLVKDIARFRPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIH 468 (902)
T ss_pred hhhhhHHHHHHHHHHhhCCcceEEeecccc--CHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeE
Confidence 788899999999999999999999999999 478899989899999988888776666666555556667777788888
Q ss_pred HcCCCCCEEEEEcccchHHHHHHHHHHc---------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 996 NRGVKKPVIIFVNQKKGADVLAKGLEKL---------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 996 ~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
...+.+.+|||....+..+.+.+.|... .+-++++|+.+|++.+..||+...+|..+|++||++|+..|.|
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 8888899999999999988888777543 3568999999999999999999999999999999999999999
Q ss_pred cCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCccccc
Q psy6409 1067 KDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRA 1128 (1832)
Q Consensus 1067 p~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1128 (1832)
++|.+||+.++ |.|-++..||.|||||.|. |+|+.+|+.-. +.+.|+.+-..++.-.+.
T Consensus 549 dgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgP-GKCfRLYt~~a--Y~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 549 DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGP-GKCFRLYTAWA--YEHELEEMTVPEIQRTNL 625 (902)
T ss_pred cCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCC-CceEEeechhh--hhhhhccCCCcceeeccc
Confidence 99999998776 6688999999999999995 99999999643 344455544445444444
Q ss_pred ccc
Q psy6409 1129 GKE 1131 (1832)
Q Consensus 1129 ~~~ 1131 (1832)
+|+
T Consensus 626 ~nv 628 (902)
T KOG0923|consen 626 GNV 628 (902)
T ss_pred hhH
Confidence 443
No 130
>KOG0951|consensus
Probab=100.00 E-value=3.1e-34 Score=358.93 Aligned_cols=385 Identities=20% Similarity=0.261 Sum_probs=299.0
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
..+|.+-..++. |+..++++|..+.++++.+ .|+++|||||+|||.++++-||+.+..... ..+.-.....+++|+
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r-~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR-EDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc-cccceecccceEEEE
Confidence 356666666664 6667999999999999977 689999999999999999999988765332 111122345589999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--ccccCCceeEEEccch
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--~~~l~~v~llViDEaH 1564 (1832)
+|+++|++.+...|.+....+|++|..++|+.....+... +..|+|+||++|.-+-++. ....+-++++|+||+|
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qie---eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhh---cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999886655444 6899999999995544442 2345678999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC-CCcEEEEccc
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSV 1643 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~-~p~~v~i~~~ 1643 (1832)
|+....++.++.|+.++. ..........+++++|||+|+... ....... .+..+++++.
T Consensus 448 -LLhDdRGpvLESIVaRt~------------------r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~s 507 (1674)
T KOG0951|consen 448 -LLHDDRGPVLESIVARTF------------------RRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSS 507 (1674)
T ss_pred -hcccccchHHHHHHHHHH------------------HHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcc
Confidence 777788999999987653 122334466889999999998754 2222222 3444555666
Q ss_pred CCCCcceEEEEEEcch--h-----hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH-------------------
Q psy6409 1644 GKPTERIEQIVYILSE--Q-----DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK------------------- 1697 (1832)
Q Consensus 1644 ~~~~~~i~q~~~~~~~--~-----~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~------------------- 1697 (1832)
-+|.+.-+|++-+... . ++-..+-.++.+....+|||||.||+.+-..|+.++.
T Consensus 508 yRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ 587 (1674)
T KOG0951|consen 508 YRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASR 587 (1674)
T ss_pred cCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchh
Confidence 6666554444433211 1 1223344556666779999999999999888887762
Q ss_pred ------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCC---
Q psy6409 1698 ------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM--- 1752 (1832)
Q Consensus 1698 ------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~--- 1752 (1832)
+.++.++||+||+..+|..+++.|+.|.++|||+|.+++||||+|+..++|. ||+
T Consensus 588 eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg 667 (1674)
T KOG0951|consen 588 EILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKG 667 (1674)
T ss_pred hhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccC
Confidence 2578999999999999999999999999999999999999999999888885 554
Q ss_pred ---CCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCccc
Q psy6409 1753 ---AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1753 ---P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~ 1820 (1832)
+.++.+.+||.|||||.+ ..|..++.-..++...|..+.+.-.+.+ |..-+.|.+..||++++| |.
T Consensus 668 ~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpie-sq~~~rl~d~lnaeiv~G-v~ 738 (1674)
T KOG0951|consen 668 RWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIE-SQFVSRLADCLNAEIVLG-VR 738 (1674)
T ss_pred ccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCCh-HHHHHHhhhhhhhhhhcc-hh
Confidence 458899999999999975 4577877777778888888887777886 888999999999999999 54
No 131
>KOG0349|consensus
Probab=100.00 E-value=7e-35 Score=329.54 Aligned_cols=292 Identities=29% Similarity=0.529 Sum_probs=235.3
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhc---CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFG---TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~---~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
+.|.+||+-|++||++|.+..+++|- ....++...+.||.....|...+..+.+|+|+||+++.+.+..+.+.+.+|
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 34589999999999999999766664 333567778999999999999999999999999999999999999999999
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~l~~ 1634 (1832)
.++|+||||.++..++.+-+..+...+|.. .+.....|.+++|||+.. .+..+....+.-
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~-------------------tsdg~rlq~~vCsatlh~feVkk~~ervmhf 425 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHM-------------------TSDGFRLQSPVCSATLHIFEVKKVGERVMHF 425 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhh-------------------hcCCcccccceeeeEEeEEEeeehhhhhccC
Confidence 999999999999999998888887777632 233456799999999853 334444556666
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchh------------------------------hHH---------HHHHHHHHhCCC
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSEQ------------------------------DKR---------KKLMEVLNRGVK 1675 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~~------------------------------~k~---------~~l~~~l~~~~~ 1675 (1832)
|..+.....+.....+.+.+..+... ... ++-+..+..+.-
T Consensus 426 ptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~m 505 (725)
T KOG0349|consen 426 PTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAM 505 (725)
T ss_pred ceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhcc
Confidence 66666655555555544443322110 000 111222334456
Q ss_pred CcEEEEECchhHHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC
Q psy6409 1676 KPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752 (1832)
Q Consensus 1676 ~~vIVFv~s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~ 1752 (1832)
.++||||.++..|+.|-.+|+..| +++.++||+..+.+|..-++.|+.+.++.|||||+++||+||..+-.+||.-+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl 585 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL 585 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec
Confidence 689999999999999999998764 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHH
Q psy6409 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789 (1832)
Q Consensus 1753 P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~ 1789 (1832)
|.+-.+|+|||||+||+..-|.|++++.......++.
T Consensus 586 pd~k~nyvhrigrvgraermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 586 PDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred CcccchhhhhhhccchhhhcceeEEEeeccchheeeh
Confidence 9999999999999999999999999987665555544
No 132
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.9e-33 Score=358.76 Aligned_cols=343 Identities=21% Similarity=0.281 Sum_probs=254.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++.... .|+.++|++||++||.|.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 576 89999999999999887 99999999999999999985432 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++||.+..++.. ...+++|+||||++| .|+|.... ..+..+.++||||||.|+ |..
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~t 218 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQT 218 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCC
Confidence 9999999999999999998433322 334799999999999 56654432 367889999999999865 211
Q ss_pred -------------ChHHHHHHHHhCCCC-----------------------------CCCCC------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT-----------------------------NLKPD------------------ 915 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~-----------------------------~~~~~------------------ 915 (1832)
+...+..++..+... ++...
T Consensus 219 pliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~ 298 (790)
T PRK09200 219 PLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVL 298 (790)
T ss_pred ceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 111122222222100 00000
Q ss_pred ---------------------------CchhHHHHHHHHhhc------------------cccccceEEEEEecCChHHH
Q psy6409 916 ---------------------------TEDAEDENKLLANYN------------------SKKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 916 ---------------------------~~~~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~~~v~ 950 (1832)
....+.+...+..-+ -.+.+..+.++|.|......
T Consensus 299 ~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~ 378 (790)
T PRK09200 299 FKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK 378 (790)
T ss_pred hhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH
Confidence 000000111110000 01223468889999866556
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|-- ++ + .-+...+...... -..++....|...+.+.+.. ..+.|+||||+|++.++.++..|...|+++
T Consensus 379 e~~~~Y~l-~v-~-~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~ 455 (790)
T PRK09200 379 EFFEVYNM-EV-V-QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPH 455 (790)
T ss_pred HHHHHhCC-cE-E-ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCE
Confidence 66555532 22 2 2233333333322 23445677888888888765 367799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC---cCcC-----EEEEcCCCCCHhHHHHHhcccccCCCCcE
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ 1099 (1832)
..+||.+.+.++..+...+..| .|+||||+++||+|| |+|. +||+|++|.+...|+||+|||||.|..|.
T Consensus 456 ~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~ 533 (790)
T PRK09200 456 NLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGS 533 (790)
T ss_pred EEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCee
Confidence 9999999999998888888777 699999999999999 7998 99999999999999999999999999999
Q ss_pred EEEEecCCCc
Q psy6409 1100 AVSFCTKDDS 1109 (1832)
Q Consensus 1100 ai~~~~~~d~ 1109 (1832)
+++|++.+|.
T Consensus 534 s~~~is~eD~ 543 (790)
T PRK09200 534 SQFFISLEDD 543 (790)
T ss_pred EEEEEcchHH
Confidence 9999998763
No 133
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.6e-33 Score=364.97 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=233.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+..+.++|++|+||||||.+|.+|++.... .+.+++|++|+|++|.|++..+. .++...|.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 345556667889999999999999999999986531 24589999999999999999885 55556676
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHHH-HHHHHhCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDV-QKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~l-~~Il~~l~~~~~ 1587 (1832)
.|...+++.. ....+.+|+|+|||+|.+.+.+. ..++++++||||||| ++++.++.-.+ ..+...++
T Consensus 76 ~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr---- 144 (819)
T TIGR01970 76 TVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLR---- 144 (819)
T ss_pred EEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcC----
Confidence 6666555433 12346789999999999998764 579999999999999 57776654332 23333332
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHH----
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR---- 1663 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~---- 1663 (1832)
...|+++||||++... ...|+.++..+.+.... ..+++.+.......+.
T Consensus 145 ---------------------~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------EDLKILAMSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHH
Confidence 3478999999998754 34567665555443322 2345555444333332
Q ss_pred -HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1664 -KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1664 -~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
..+..++.. ..+.+||||++...++.++..|.. .++.+..+||+|++++|..+++.|++|+.+|||||+++++||
T Consensus 198 ~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgI 276 (819)
T TIGR01970 198 SRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSL 276 (819)
T ss_pred HHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcc
Confidence 233444433 457899999999999999999987 478899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------------------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~------------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++||++++|. |-.+|+||+|||||. ..|.|+.|+++.+.
T Consensus 277 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 277 TIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 999999999999875 345799999999998 79999999997654
No 134
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.9e-33 Score=354.71 Aligned_cols=307 Identities=18% Similarity=0.196 Sum_probs=221.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
...|+++|.+|++.++.+++.+++||||||||+++...+...+ . ....++|||+||++|+.|+.+.+.+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-E----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-h----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998755332212 1 1234899999999999999999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++......+..+.||.... .+.+|+|+||+++.+... ..+.++++||+||||++... .+..++..+
T Consensus 181 ~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~ 246 (501)
T PHA02558 181 YRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKL 246 (501)
T ss_pred hccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhh
Confidence 8754445566677775432 357999999999975432 24688999999999998753 345555544
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH--HHhcCCCcEEEEccc-----------------
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYLRRPATVYIGSV----------------- 968 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~--~~~l~~p~~v~~~~~----------------- 968 (1832)
+ ...++++||||++....... ..++. |....+...
T Consensus 247 ~-------------------------~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~ 300 (501)
T PHA02558 247 D-------------------------NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIF 300 (501)
T ss_pred h-------------------------ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEe
Confidence 2 23579999999865322111 11111 211111100
Q ss_pred -CCCCc---c-----eEEEE-EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 969 -GKPTE---R-----IEQIV-YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 969 -~~~~~---~-----i~q~~-~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
..+.. . +.+.+ .......+...+..+... ..+.++||||++.++++.+++.|...|.++..+||++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~ 380 (501)
T PHA02558 301 LRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDT 380 (501)
T ss_pred ccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 00000 0 00000 011112233333333322 245679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEec-ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1037 EQRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaT-dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
++|..+++.|++|...||||| +++++|+|+|++++||++.++.|...|+||+||++|.+..+...+++.
T Consensus 381 ~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 381 EDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 999999999999999999999 899999999999999999999999999999999999876554444443
No 135
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-33 Score=347.01 Aligned_cols=300 Identities=19% Similarity=0.175 Sum_probs=209.9
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHH
Confidence 58999999999999999999976522 2466899999999999999999998732 2344455543311
Q ss_pred -----------HHH-HHH------hcCCceeecCHHHHHHHHHccc----cccC--CceeEEEecchhhhcCCChHHHHH
Q psy6409 847 -----------EQG-FRL------RLGCEIVIATPGRLIDVLENRY----LVLN--QCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 847 -----------~~~-~~l------~~~~~IlV~TP~rL~d~l~~~~----~~l~--~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
... ... ....+|+|+||+.++..+.... ..+. ..++|||||||.+.+++++. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 000 000 1136899999999988776521 1111 23789999999998765544 444
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
++..++ ....|+++||||+|..+..++..+...+....+.... ......+.+..+
T Consensus 147 ~l~~l~------------------------~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 201 (358)
T TIGR01587 147 VLEVLK------------------------DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKI 201 (358)
T ss_pred HHHHHH------------------------HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceee
Confidence 444331 1247899999999987777766554332111111000 000111222111
Q ss_pred --chhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHH----HHHHHhCCCCcE
Q psy6409 983 --SEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQREL----ALNSLKGGSKDI 1053 (1832)
Q Consensus 983 --~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~----il~~F~~G~~~V 1053 (1832)
....+...+..++.. ..+.++||||++++.|+.++..|...+. .+..+||++++.+|.. +++.|++|..+|
T Consensus 202 ~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~i 281 (358)
T TIGR01587 202 ESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFV 281 (358)
T ss_pred ccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeE
Confidence 112334444444443 2467899999999999999999988776 4999999999999976 489999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC----cEEEEEecCCC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLAVSFCTKDD 1108 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~----G~ai~~~~~~d 1108 (1832)
||||+++++||||| +++||++..| +.+|+||+||+||.|+. |..++|....+
T Consensus 282 lvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 282 IVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 99999999999996 8899998776 78999999999998864 36666666544
No 136
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.4e-32 Score=351.30 Aligned_cols=306 Identities=19% Similarity=0.208 Sum_probs=219.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...|+|+|.+|++.++.+++.+++||||||||+++...+...+ . ....++|||+||++|+.|+.+.+.+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~-~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYL-E----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH-h----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999998754332222 1 1234899999999999999999999
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
++......+..+.||.... .+++|+|+||+++..... ..+.++++||+||||++... .+..++..+
T Consensus 181 ~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~ 246 (501)
T PHA02558 181 YRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKL 246 (501)
T ss_pred hccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhh
Confidence 8754444555666665432 257899999999875442 24678999999999998753 455565554
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEccc------------------
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSV------------------ 1643 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~------------------ 1643 (1832)
+ ..+++++||||++........ ..+..|....+...
T Consensus 247 ~-------------------------~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~ 301 (501)
T PHA02558 247 D-------------------------NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFL 301 (501)
T ss_pred h-------------------------ccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEec
Confidence 3 235789999999754321111 11111221111100
Q ss_pred CCCCc---ce-----EEEE-EEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1644 GKPTE---RI-----EQIV-YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1644 ~~~~~---~i-----~q~~-~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
..+.. .+ ...+ .......+...+..++.. ..+.++||||+++++++.|++.|...+.++..+||++++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~ 381 (501)
T PHA02558 302 RYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTE 381 (501)
T ss_pred cCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 00000 00 0000 001112223333333322 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEc-ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc-EEEEE
Q psy6409 1713 QRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-LAVSF 1778 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVAT-dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G-~ai~~ 1778 (1832)
+|..+++.|++|+..||||| +++++|+|+|++++||++++|.|...|+||+||++|.+..+ .|++|
T Consensus 382 eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 382 DRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred HHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999998 89999999999999999999999999999999999976543 33333
No 137
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=363.23 Aligned_cols=352 Identities=23% Similarity=0.292 Sum_probs=278.2
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
..+..++.+.|+..|+++|.+|+..+.+|+|+||++|||||||.+|++||+.++...+ ..++|||.||++
T Consensus 57 ~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtnA 126 (851)
T COG1205 57 ESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTNA 126 (851)
T ss_pred hHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechhh
Confidence 3567888889999999999999999999999999999999999999999999886532 338999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc----cccCCceeEEEecchh
Q psy6409 817 LAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY----LVLNQCTYIVLDEADR 890 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~--i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~----~~l~~~~~lViDEaH~ 890 (1832)
||+.+.+.|.++...++ +.+..+.|+....+........++||++||.||..++.+.. ..+.+++|||+||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH- 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH- 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce-
Confidence 99999999999988877 88888899988877767778899999999999977665543 367789999999999
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCC
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 970 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~ 970 (1832)
.+...|+..+..+++++. ..........|+|+.|||+.+..+ ++..+...+....+.....
T Consensus 206 tYrGv~GS~vA~llRRL~------------------~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~ 266 (851)
T COG1205 206 TYRGVQGSEVALLLRRLL------------------RRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGS 266 (851)
T ss_pred eccccchhHHHHHHHHHH------------------HHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCC
Confidence 667779999999988772 222333467899999999987544 6777777666554443333
Q ss_pred CCcceEEEEEEcc---------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHH----HHHHHcC----CcEEEEc
Q psy6409 971 PTERIEQIVYILS---------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLA----KGLEKLG----YNACTLH 1031 (1832)
Q Consensus 971 ~~~~i~q~~~~~~---------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~----~~L~~~g----~~v~~lh 1031 (1832)
+....... .... -.++...+..+... ..+-++|+|+.++..++.++ ..+...+ ..+..++
T Consensus 267 ~~~~~~~~-~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~ 345 (851)
T COG1205 267 PRGLRYFV-RREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYR 345 (851)
T ss_pred CCCceEEE-EeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeecc
Confidence 33322222 2211 11233333333322 25668999999999999987 4454445 6789999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCC--C
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD--D 1108 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~--d 1108 (1832)
|++...+|..++..|++|++.++++|++++-||||-+++.||.++.|. +..++.||+|||||.++.+..+.++..+ |
T Consensus 346 ~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d 425 (851)
T COG1205 346 AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLD 425 (851)
T ss_pred ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999777777666633 3
Q ss_pred chHHHHHHHHH
Q psy6409 1109 SHLFYDLKQMM 1119 (1832)
Q Consensus 1109 ~~~~~~l~~~l 1119 (1832)
..++.....++
T Consensus 426 ~yy~~~p~~~~ 436 (851)
T COG1205 426 SYYLRHPEELL 436 (851)
T ss_pred hhhhhCcHhhh
Confidence 34444444443
No 138
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.3e-32 Score=350.25 Aligned_cols=341 Identities=23% Similarity=0.283 Sum_probs=255.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|..+++.+..|+ |+.+.||+|||++|.+|++.... .|+.|+|++||++||.|.+.++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 577 89999999999998887 99999999999999999985443 3788999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcc-hHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLS-REEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~-~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~g-- 1570 (1832)
..+...+|+++++++|+.+ ..... ...+++|+|+||+++ .++|..+. ..+..+.++||||||.|+=..
T Consensus 140 ~~l~~~lGl~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~ 217 (790)
T PRK09200 140 GQVYEFLGLTVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQ 217 (790)
T ss_pred HHHHhhcCCeEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCC
Confidence 9999999999999999988 44332 234699999999999 56665433 356889999999999864110
Q ss_pred --------------ChHHHHHHHHhCCCC-----------------------------CCCCCCch----hhhHHHHHhh
Q psy6409 1571 --------------FEPDVQKILEYMPVT-----------------------------NLKPDTED----AEDENKLLAN 1603 (1832)
Q Consensus 1571 --------------f~~~l~~Il~~l~~~-----------------------------~~~~~~~~----~~~~~~l~~~ 1603 (1832)
+...+..++..+... +. ..... ......+.+.
T Consensus 218 tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l-~~~~~~~~~~~i~~Al~A~ 296 (790)
T PRK09200 218 TPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNL-YSLEHQVLYRHIILALRAH 296 (790)
T ss_pred CceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccc-cChhhhHHHHHHHHHHHHH
Confidence 111222222222110 00 00000 0000000000
Q ss_pred ---------------------------------------------h---------------ccccCcceEEEEEccCChH
Q psy6409 1604 ---------------------------------------------Y---------------NSKKKYRQTVMFTATMPPA 1623 (1832)
Q Consensus 1604 ---------------------------------------------~---------------~~~~~~~q~v~~SATl~~~ 1623 (1832)
+ +.-..+..+.++|.|....
T Consensus 297 ~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~ 376 (790)
T PRK09200 297 VLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTE 376 (790)
T ss_pred HHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHH
Confidence 0 0001223577899998766
Q ss_pred HHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCC
Q psy6409 1624 VERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGY 1700 (1832)
Q Consensus 1624 ~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~ 1700 (1832)
-.++...|--+ .+ .-+...|...... -........|...++..+.. ....|+||||+|+..++.++..|...|+
T Consensus 377 ~~e~~~~Y~l~--v~-~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi 453 (790)
T PRK09200 377 EKEFFEVYNME--VV-QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGI 453 (790)
T ss_pred HHHHHHHhCCc--EE-ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 66666655332 22 2244444433322 23445667888888888865 3678999999999999999999999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCC---CCCC-----EEEEeCCCCCHHHHHHHhcccccCCCc
Q psy6409 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHRIGRTGRAGKE 1772 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDi---p~v~-----~VI~~d~P~s~~~yiQRiGRaGR~g~~ 1772 (1832)
++..+||.+.+.++..+...++.| +|+|||++++||+|| |+|. +||+|++|.|...|+||+|||||.|++
T Consensus 454 ~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 454 PHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred CEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCC
Confidence 999999999999998888888777 799999999999999 7998 999999999999999999999999999
Q ss_pred cEEEEEeeCCCh
Q psy6409 1773 GLAVSFCTKDDS 1784 (1832)
Q Consensus 1773 G~ai~~~~~~d~ 1784 (1832)
|.+++|++..|.
T Consensus 532 G~s~~~is~eD~ 543 (790)
T PRK09200 532 GSSQFFISLEDD 543 (790)
T ss_pred eeEEEEEcchHH
Confidence 999999998764
No 139
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.2e-32 Score=340.54 Aligned_cols=299 Identities=20% Similarity=0.203 Sum_probs=209.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchH
Q psy6409 1442 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~ 1521 (1832)
+++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++. ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFK 67 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHH
Confidence 58999999999999999999976532 2467899999999999999999999743 2344445443311
Q ss_pred -----------HHHH-Hh------hcCCcEEEeCHHHHHHHHHccc----cccC--CceeEEEccchhhhcCCChHHHHH
Q psy6409 1522 -----------EQGF-RL------RLGCEIVIATPGRLIDVLENRY----LVLN--QCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1522 -----------~~~~-~l------~~~~~IiVaTP~rl~~~l~~~~----~~l~--~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
.... .. ....+|+|+||+++...+..+. ..+. ..++|||||||.+.+.++.. +..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~ 146 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILA 146 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHH
Confidence 0000 00 1136799999999988776521 1111 23799999999998765443 444
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce-EEEEEE
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI-EQIVYI 1656 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i-~q~~~~ 1656 (1832)
++..++ ....|++++|||+|..+..+...+...+....... .....+ .+.+..
T Consensus 147 ~l~~l~------------------------~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 200 (358)
T TIGR01587 147 VLEVLK------------------------DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDL--KEERRFERHRFIK 200 (358)
T ss_pred HHHHHH------------------------HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCC--cccccccccccee
Confidence 444332 12468999999999877766655543321111110 000001 122211
Q ss_pred c--chhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHH----HHHHhhCCCCc
Q psy6409 1657 L--SEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQREL----ALNSLKGGSKD 1727 (1832)
Q Consensus 1657 ~--~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~----il~~F~~g~~~ 1727 (1832)
+ ....+...+..++... ..+++||||+++++|+.++..|...+. .+..+||++++.+|.. +++.|++|+.+
T Consensus 201 ~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ 280 (358)
T TIGR01587 201 IESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF 280 (358)
T ss_pred eccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe
Confidence 1 1123444455555432 467999999999999999999988766 4999999999999976 48999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc----cEEEEEeeCCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLAVSFCTKDD 1783 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~----G~ai~~~~~~d 1783 (1832)
|||||+++++||||| +++||++..| +++|+||+||+||.|+. |..++|....+
T Consensus 281 ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 281 VIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred EEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999999996 8999999877 89999999999998754 36676766544
No 140
>KOG0924|consensus
Probab=100.00 E-value=2.1e-33 Score=332.81 Aligned_cols=319 Identities=18% Similarity=0.222 Sum_probs=252.6
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 744 ~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
+...|...+..+.+.+..+..++-|||+++||||||. .||-+.+ . ........+.|..|.|..|+.+++
T Consensus 350 eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~--e-------dGY~~~GmIGcTQPRRvAAiSVAk 418 (1042)
T KOG0924|consen 350 EQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLY--E-------DGYADNGMIGCTQPRRVAAISVAK 418 (1042)
T ss_pred HHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHH--h-------cccccCCeeeecCchHHHHHHHHH
Confidence 3456777788899999999999999999999999999 4444322 1 223445689999999999999887
Q ss_pred HHH-HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 824 ETN-KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 824 ~~~-~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
.+. +++..+|..|++-+--.+.+ ...+.|-++|.|.|+....... .|..+++|||||||
T Consensus 419 rVa~EM~~~lG~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAH------------- 478 (1042)
T KOG0924|consen 419 RVAEEMGVTLGDTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAH------------- 478 (1042)
T ss_pred HHHHHhCCccccccceEEEeeecC------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhh-------------
Confidence 765 44444555444443332222 2367899999999987665443 68899999999999
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
.++.+++.++++++.....+.+..+|.+||||. .++|+.+|.+.|.+...|................
T Consensus 479 -----------ERslNtDilfGllk~~larRrdlKliVtSATm~--a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eD 545 (1042)
T KOG0924|consen 479 -----------ERSLNTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVED 545 (1042)
T ss_pred -----------hcccchHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHHhCCCceeeecCCccceEEEeccCchHH
Confidence 556788999999999999999999999999994 7889998888898888777665443322222222
Q ss_pred chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc----------CCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 983 SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----------GYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
+-+..+.+.++++..+..+.+|||...++.++..+..+... ++.+.++++.|++..+.++|+....|..+
T Consensus 546 YVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK 625 (1042)
T KOG0924|consen 546 YVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRK 625 (1042)
T ss_pred HHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCcee
Confidence 33455566666777778889999999999887777666432 57899999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
|+|||++|+..|.||+|.+||+.++ |.|.++.-||.|||||.|. |.|+.+||.+
T Consensus 626 ~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p-G~cYRlYTe~ 697 (1042)
T KOG0924|consen 626 CIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP-GTCYRLYTED 697 (1042)
T ss_pred EEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC-cceeeehhhh
Confidence 9999999999999999999997665 6788999999999999985 9999999985
No 141
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-32 Score=360.03 Aligned_cols=302 Identities=17% Similarity=0.259 Sum_probs=230.3
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+.++++++++||||||||.+|.+|++... ....++||++|||++|.|++..+. .++...|.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~------------~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG------------GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC------------CcCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34555666789999999999999999999888531 123479999999999999999885 45666777
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCCh-HHHHHHHHhCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFE-PDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~-~~l~~Il~~l~~~~~ 1587 (1832)
.+...+++.+.. .....|+|+|||+|.+++... ..++++++|||||+|. .++.++. ..+..++..++
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr---- 147 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR---- 147 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC----
Confidence 787777765422 235689999999999988764 4799999999999995 4443321 11222332222
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH---
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK--- 1664 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~--- 1664 (1832)
...|+++||||++... ...|+.++..+.+... ...+.+.+.......+..
T Consensus 148 ---------------------~~lqlilmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v 200 (812)
T PRK11664 148 ---------------------DDLKLLIMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAV 200 (812)
T ss_pred ---------------------ccceEEEEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHH
Confidence 4578999999998652 3456666555544322 123555555444444432
Q ss_pred --HHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1665 --KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1665 --~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
.+..++.. ..+.+||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 201 ~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 201 ARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 23344432 467899999999999999999987 578899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCC------------------CHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~------------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||+|++||++++|. |-++|+||+|||||. ..|.|+.|+++.+.
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 999999999988764 346899999999998 69999999997643
No 142
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.5e-32 Score=343.84 Aligned_cols=342 Identities=23% Similarity=0.290 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|++|++.... .|..++|++||++||.|.++.+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------------hCCCEEEEcCCHHHHHHHHHHH
Confidence 565 79999999999988886 99999999999999999964321 2456999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhhcC-CCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDM-GFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~d~-gf~ 897 (1832)
..+...+|+++++++||.+..++.... .++|+||||++| .|+|..+. +.+..+.++||||||.|+-. ...
T Consensus 118 ~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 118 GQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred HHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 999999999999999999876554443 589999999999 88887662 46789999999999987631 111
Q ss_pred HH---------------HHHHHHhCCC-----------------------------CCCCCC------------------
Q psy6409 898 PD---------------VQKILEYMPV-----------------------------TNLKPD------------------ 915 (1832)
Q Consensus 898 ~~---------------i~~Il~~l~~-----------------------------~~~~~~------------------ 915 (1832)
|- ...|...+.. .+....
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 10 0111111110 000000
Q ss_pred ---------------------------CchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHH
Q psy6409 916 ---------------------------TEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 916 ---------------------------~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~ 950 (1832)
....+.+...+..-+. .+.+..+.++|+|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 0000001111100000 0223467788999876666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHH--cCCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~--~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|--+ +.+ -+...+...... -..+.....|...+.+.+. ...+.|+||||+++..++.++..|...|+++
T Consensus 356 E~~~iY~l~-vv~--IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 356 EFEKIYNLE-VVV--VPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred HHHHHhCCC-EEE--eCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 666655433 222 222333222222 1234456667777766553 2467899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcC-------cCEEEEcCCCCCHhHHHHHhcccccCCCCcEE
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~-------v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
..+||. +.+|+..+..|+.+...|+||||+|+||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 889999999999999999999999999999998 55999999999999999999999999999999
Q ss_pred EEEecCCCc
Q psy6409 1101 VSFCTKDDS 1109 (1832)
Q Consensus 1101 i~~~~~~d~ 1109 (1832)
.+|++.+|.
T Consensus 511 ~~~ls~eD~ 519 (745)
T TIGR00963 511 RFFLSLEDN 519 (745)
T ss_pred EEEEeccHH
Confidence 999999874
No 143
>KOG0352|consensus
Probab=100.00 E-value=9.1e-33 Score=313.08 Aligned_cols=333 Identities=23% Similarity=0.294 Sum_probs=255.1
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 738 EILEIIEK-IGYAEP-TPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~p-t~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
.+.++|++ +|+.++ ++.|++|+..+.. ++||.|++|||+||++||.||.|.+ +...||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 45566665 577654 7899999999987 4799999999999999999999852 3489999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHH------HhcCCceeecCHHHHHHH----HHccccccCCceeEE
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR------LRLGCEIVIATPGRLIDV----LENRYLVLNQCTYIV 884 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~------l~~~~~IlV~TP~rL~d~----l~~~~~~l~~~~~lV 884 (1832)
.+|...+.+.+.++ .+.+-.+.+-++-.+.... .+....|++.||+....- +.+....-+.+.|+|
T Consensus 71 iALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~v 146 (641)
T KOG0352|consen 71 IALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEE
Confidence 99999988888876 4445555555554443222 223578999999876422 222333455679999
Q ss_pred EecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH--HHHHhcCCC
Q psy6409 885 LDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 960 (1832)
Q Consensus 885 iDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~--~~~~~l~~p 960 (1832)
+||||++.+|| |+|++..+-+.. +.......+.++||.++.+.. +....+.+|
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LR-----------------------S~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLR-----------------------SVCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHH-----------------------hhCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 99999999998 999887764422 233456789999999888765 344557788
Q ss_pred cEEEEcccCCCCcceEEEEEEcch----hhHHHHHHHHHHcC-------------CCCCEEEEEcccchHHHHHHHHHHc
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILSE----QDKRKKLMEVLNRG-------------VKKPVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~~----~~k~~~L~~~l~~~-------------~~~~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
+.++-...+..+. ++-+.- .+-+..|.++.... ..+-.||||.|++.|+.++-.|...
T Consensus 204 VAiFkTP~FR~NL-----FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 204 VAIFKTPTFRDNL-----FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred HHhccCcchhhhh-----hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc
Confidence 7665433332221 111110 11222333332211 1235899999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
|+++..+|+|+...+|.++.+.|.+|++.|++||..+++|+|-|+|.+|||+++|.+++.|.|..|||||.|....|-++
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHH
Q psy6409 1104 CTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~ 1117 (1832)
|..+|..-++.|.+
T Consensus 359 YsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 359 YSRQDKNALNFLVS 372 (641)
T ss_pred ecccchHHHHHHHh
Confidence 99999877776644
No 144
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=8.9e-32 Score=342.59 Aligned_cols=342 Identities=23% Similarity=0.253 Sum_probs=243.8
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|......+..| .|+.++||+|||++|++|++.... .|+.++|++|+++||.|+++.+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL------------~g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL------------TGKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh------------cCCceEEeCCCHHHHHHHHHHH
Confidence 454 5555555555554444 799999999999999999875542 2556999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCc---hHHHHHHHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhhcCC
Q psy6409 826 NKFGTPLGIRTVLVVGGLS---REEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMIDMG 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~---~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~d~g 895 (1832)
..+...+|+.+.+++++.. ...+......+++|+||||++| .+.|... ...+..+.++|+||||.|+-+.
T Consensus 132 ~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 132 GPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred HHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 9999999999999887622 2223334445899999999999 5655332 2357789999999999985321
Q ss_pred -C---------------hHHHHHHHHhCCCC-----------------------------CCCCCCch------------
Q psy6409 896 -F---------------EPDVQKILEYMPVT-----------------------------NLKPDTED------------ 918 (1832)
Q Consensus 896 -f---------------~~~i~~Il~~l~~~-----------------------------~~~~~~~~------------ 918 (1832)
. ...+..++..+... ++ .+..+
T Consensus 212 artpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l-~~~~~~~~~~~i~~al~ 290 (762)
T TIGR03714 212 AQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNL-YSEEYFELVRHINLALR 290 (762)
T ss_pred CcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCcc-CChhhHHHHHHHHHHHH
Confidence 1 11122222222110 00 00000
Q ss_pred ----------------------------------hHHHHHHHHhhc------------------cccccceEEEEEecCC
Q psy6409 919 ----------------------------------AEDENKLLANYN------------------SKKKYRQTVMFTATMP 946 (1832)
Q Consensus 919 ----------------------------------~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~ 946 (1832)
.+.+...+..-+ -.+.+..+.++|+|..
T Consensus 291 A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 370 (762)
T TIGR03714 291 AHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK 370 (762)
T ss_pred HHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh
Confidence 000110110000 0123456788999976
Q ss_pred hHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc
Q psy6409 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL 1023 (1832)
Q Consensus 947 ~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~ 1023 (1832)
.....|...|-- + +..-+...+...... -..+.....|...+.+.+.. ..+.|+||||+++..++.++..|...
T Consensus 371 ~~~~Ef~~iY~l-~--v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~ 447 (762)
T TIGR03714 371 VAEKEFIETYSL-S--VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE 447 (762)
T ss_pred hHHHHHHHHhCC-C--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC
Confidence 666667655532 2 222233333333322 23556677888888887765 45779999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---------CcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------DVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
|+++..+||.+.+.++..+...++.| .|+||||+++||+||| ++.+||+|++|....+ +||+|||||.
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRq 524 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQ 524 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCC
Confidence 99999999999999998888888777 6999999999999999 9999999999988766 9999999999
Q ss_pred CCCcEEEEEecCCCc
Q psy6409 1095 GKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1095 g~~G~ai~~~~~~d~ 1109 (1832)
|.+|.+++|++.+|.
T Consensus 525 G~~G~s~~~is~eD~ 539 (762)
T TIGR03714 525 GDPGSSQFFVSLEDD 539 (762)
T ss_pred CCceeEEEEEccchh
Confidence 999999999998763
No 145
>KOG0351|consensus
Probab=100.00 E-value=3.2e-32 Score=354.84 Aligned_cols=331 Identities=25% Similarity=0.304 Sum_probs=259.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.-....+|+...+|-|.+||..++.|+|.+|.+|||+||++||.||++. .++..|||.|..+|++
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHHHHH
Confidence 3344568999999999999999999999999999999999999999973 2448999999999998
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhc---CCceeecCHHHHHHHH--HccccccCC---ceeEEEecc
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL---GCEIVIATPGRLIDVL--ENRYLVLNQ---CTYIVLDEA 888 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~---~~~IlV~TP~rL~d~l--~~~~~~l~~---~~~lViDEa 888 (1832)
.+...+.. .+|....+.++....++. ..+.. ..+|++.||+++...- ......|.. +.++|||||
T Consensus 319 DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 319 DQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 87666643 488899999998875443 23333 3799999999986332 222334555 899999999
Q ss_pred hhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC--CCcEEE
Q psy6409 889 DRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPATVY 964 (1832)
Q Consensus 889 H~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~--~p~~v~ 964 (1832)
|++.+|| |+|.+..+...... .....+|++|||.+..+..-+-..|+ +|.. +
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~-----------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~-~ 450 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIR-----------------------FPGVPFIALTATATERVREDVIRSLGLRNPEL-F 450 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhh-----------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcce-e
Confidence 9999998 99999887543311 12267999999998887665544443 4442 2
Q ss_pred EcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
-.....+ ++...+..-. ...-...+..+-..++...+||||.++.+|+.++..|...|+.+..+|+||+..+|..|.
T Consensus 451 ~~sfnR~--NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq 528 (941)
T KOG0351|consen 451 KSSFNRP--NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQ 528 (941)
T ss_pred cccCCCC--CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHH
Confidence 2222222 2322222222 122233333333446778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
..|-.++++|+|||=++++|||.|+|..||||.+|+|++.|+|.+|||||.|....|++|+...|...+..+
T Consensus 529 ~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 529 KAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred HHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985555444
No 146
>KOG0351|consensus
Probab=100.00 E-value=7.4e-32 Score=351.49 Aligned_cols=336 Identities=25% Similarity=0.308 Sum_probs=264.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
+.+..+...+|+..++|-|.+||..++.|+|+++.+|||+||++||.||++. -++.+|||.|..+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHH
Confidence 3444455568999999999999999999999999999999999999999973 2458999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hhhc---CCcEEEeCHHHHHHHH--HccccccCC---ceeEEE
Q psy6409 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RLRL---GCEIVIATPGRLIDVL--ENRYLVLNQ---CTYIVL 1560 (1832)
Q Consensus 1492 La~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~---~~~IiVaTP~rl~~~l--~~~~~~l~~---v~llVi 1560 (1832)
|++.+...+.. .++....+.++....++.. .+.. .++|+..||+++...- ......+.. +.++||
T Consensus 316 Lm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vI 391 (941)
T KOG0351|consen 316 LMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVI 391 (941)
T ss_pred HHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEe
Confidence 99887766644 4788899999888754322 2333 3789999999986432 222234444 899999
Q ss_pred ccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC--CCc
Q psy6409 1561 DEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR--RPA 1636 (1832)
Q Consensus 1561 DEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~--~p~ 1636 (1832)
||||+..+|| |+|.+..+....... ....++.+|||.+..+..-+-..|+ +|.
T Consensus 392 DEAHCVSqWgHdFRp~Yk~l~~l~~~~-----------------------~~vP~iALTATAT~~v~~DIi~~L~l~~~~ 448 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPSYKRLGLLRIRF-----------------------PGVPFIALTATATERVREDVIRSLGLRNPE 448 (941)
T ss_pred cHHHHhhhhcccccHHHHHHHHHHhhC-----------------------CCCCeEEeehhccHHHHHHHHHHhCCCCcc
Confidence 9999999998 999998876544311 1256999999998888765554444 443
Q ss_pred EEEEcccCCCCcceEEEEEEcchhhHHHHHHHHH-HhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 1637 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715 (1832)
Q Consensus 1637 ~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l-~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~ 1715 (1832)
+...+..++ ++...+..-........+...+ ..++..+.||||.++..|+.++..|...++.+..||+||+..+|.
T Consensus 449 -~~~~sfnR~--NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~ 525 (941)
T KOG0351|consen 449 -LFKSSFNRP--NLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERE 525 (941)
T ss_pred -eecccCCCC--CceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHH
Confidence 222233333 3333333333223333333333 345788999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHH
Q psy6409 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1716 ~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1792 (1832)
.|...|..++++|+|||=+++.|||.|+|..||||.+|++++.|.|-+|||||.|....|++|+...|...+..+..
T Consensus 526 ~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 526 TVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred HHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997666555543
No 147
>KOG0354|consensus
Probab=100.00 E-value=1.1e-31 Score=334.05 Aligned_cols=333 Identities=25% Similarity=0.297 Sum_probs=235.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
+.+.......--....++.||.+.+..++ |+|+|+++|||+|||++++..|+.|+...| ..++||+||+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----------~~KiVF~aP~ 115 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----------KGKVVFLAPT 115 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----------cceEEEeeCC
Confidence 34444333333355689999999999999 999999999999999999999999998755 3679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccc-cCCceeEEEccchhhhc
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~-l~~v~llViDEaH~ll~ 1568 (1832)
+.|+.|+...+..++.+ ..+....||..+......+....+|+|+||+.+.+.|.++... ++.+.++||||||+-..
T Consensus 116 ~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k 193 (746)
T KOG0354|consen 116 RPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK 193 (746)
T ss_pred chHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc
Confidence 99999988888888765 5566666665544444456667899999999999988876544 59999999999999876
Q ss_pred CCChHHHH-HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH-----------------
Q psy6409 1569 MGFEPDVQ-KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS----------------- 1630 (1832)
Q Consensus 1569 ~gf~~~l~-~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~----------------- 1630 (1832)
..-+..+. ..+.+-. ...|++++|||+....+.....
T Consensus 194 n~~Y~~Vmr~~l~~k~-------------------------~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~ 248 (746)
T KOG0354|consen 194 NHPYNNIMREYLDLKN-------------------------QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIK 248 (746)
T ss_pred cccHHHHHHHHHHhhh-------------------------ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhh
Confidence 54333332 2222211 1239999999986443321110
Q ss_pred ---------------------------------hcC-----------CCcEEEEc------ccCCCCcceEEE-------
Q psy6409 1631 ---------------------------------YLR-----------RPATVYIG------SVGKPTERIEQI------- 1653 (1832)
Q Consensus 1631 ---------------------------------~l~-----------~p~~v~i~------~~~~~~~~i~q~------- 1653 (1832)
++. +....+-. ....+...-.+.
T Consensus 249 ~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~ 328 (746)
T KOG0354|consen 249 SNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALH 328 (746)
T ss_pred hhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHH
Confidence 000 00000000 000000000000
Q ss_pred -------------EEE---------------c-------------------------------chhhHHHHHHHHHH---
Q psy6409 1654 -------------VYI---------------L-------------------------------SEQDKRKKLMEVLN--- 1671 (1832)
Q Consensus 1654 -------------~~~---------------~-------------------------------~~~~k~~~l~~~l~--- 1671 (1832)
+.. . .+..|+..+.+++.
T Consensus 329 ~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f 408 (746)
T KOG0354|consen 329 LRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQF 408 (746)
T ss_pred HHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHh
Confidence 000 0 01123334444443
Q ss_pred -hCCCCcEEEEECchhHHHHHHHHHHH---cCCcEEEEcC--------CCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1672 -RGVKKPVIIFVNQKKGADVLAKGLEK---LGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1672 -~~~~~~vIVFv~s~~~a~~l~~~L~~---~~~~v~~lHg--------~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
..+..++||||.+|..|..|...|.. .|+....+-| +|++.++.++++.|++|+++|||||+++++|+
T Consensus 409 ~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGL 488 (746)
T KOG0354|consen 409 EQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGL 488 (746)
T ss_pred hcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccC
Confidence 23567899999999999999999873 2334444333 89999999999999999999999999999999
Q ss_pred CCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1740 DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1740 Dip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|||+|++||.||...|+...+||+|| ||+ +.|.++++++..
T Consensus 489 DI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 489 DIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred CcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 99999999999999999999999999 997 578999888854
No 148
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=351.72 Aligned_cols=342 Identities=23% Similarity=0.292 Sum_probs=270.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1411 PTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1411 ~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
...+..++...|...|+++|.+|+..+.+|+|+||+.|||||||.||++||+..+...+ ..++|||.||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtn 125 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTN 125 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechh
Confidence 34457888888999999999999999999999999999999999999999999887643 33799999999
Q ss_pred HHHHHHHHHHHHhcCCCC--CeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccch
Q psy6409 1491 ELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1491 eLa~Qi~~~~~~~~~~~g--~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH 1564 (1832)
+||+.+.+.++++...++ +++..++|+....+......+.++||+++|.+|..++.. +.+.+.++.+||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999987777 788889999988877677788899999999999886543 33567889999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.+ ...|+..+..++.++. ..+.......|+|+.|||+.+..+ ++..+........+...+
T Consensus 206 tY-rGv~GS~vA~llRRL~------------------~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g 265 (851)
T COG1205 206 TY-RGVQGSEVALLLRRLL------------------RRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDG 265 (851)
T ss_pred ec-cccchhHHHHHHHHHH------------------HHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCC
Confidence 54 4457777777766552 222333467899999999988754 555566555444344444
Q ss_pred CCCcceEEEEEEc-----ch---hhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHH----HHHHHcC----CcEEEEc
Q psy6409 1645 KPTERIEQIVYIL-----SE---QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLA----KGLEKLG----YNACTLH 1706 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~-----~~---~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~----~~L~~~~----~~v~~lH 1706 (1832)
.+........... .. ......+..+... ...-++|+|+.++..++.++ ..+...+ ..+..++
T Consensus 266 ~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~ 345 (851)
T COG1205 266 SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYR 345 (851)
T ss_pred CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeecc
Confidence 4444333322211 01 1222222222222 25678999999999999997 4444445 6789999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|++...+|..++..|++|++.++++|++++.||||.+++.||++..|. ++.+++||.|||||.++.+..+..+..+
T Consensus 346 ~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 346 AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999 9999999999999999888887777754
No 149
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.2e-31 Score=336.45 Aligned_cols=340 Identities=23% Similarity=0.253 Sum_probs=238.8
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
+|+|.|++..+..+++.|+.++||+|||++|.+|++.... .++.|+|++|+++||.|.+.++..+...
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL------------~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL------------TGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh------------cCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 4455555555554455799999999999999999875442 2556999999999999999999999999
Q ss_pred CCCeEEEEECCcc---hHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhhcCC------
Q psy6409 1507 LGIRTVLVVGGLS---REEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMIDMG------ 1570 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~---~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll~~g------ 1570 (1832)
+|+++.+++++.. ..........+++|+++||++| .+.+... ...+..+.++|+||||.|+-..
T Consensus 138 LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpli 217 (762)
T TIGR03714 138 LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLV 217 (762)
T ss_pred cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCee
Confidence 9999998877622 1122223335799999999999 5666432 3457789999999999875321
Q ss_pred ----------ChHHHHHHHHhCCCCC-C---------------------------CCCCchhhh----HHHHHhhh--cc
Q psy6409 1571 ----------FEPDVQKILEYMPVTN-L---------------------------KPDTEDAED----ENKLLANY--NS 1606 (1832)
Q Consensus 1571 ----------f~~~l~~Il~~l~~~~-~---------------------------~~~~~~~~~----~~~l~~~~--~~ 1606 (1832)
+...+..++..+.... + ..+...... ...+.+.. ..
T Consensus 218 isg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~ 297 (762)
T TIGR03714 218 ISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKR 297 (762)
T ss_pred eeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhc
Confidence 1112222333332110 0 000000000 00000000 00
Q ss_pred ----------------------------------------------------------ccCcceEEEEEccCChHHHHHH
Q psy6409 1607 ----------------------------------------------------------KKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1607 ----------------------------------------------------------~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
-+.+..+.+||.|......++.
T Consensus 298 d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~ 377 (762)
T TIGR03714 298 NKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI 377 (762)
T ss_pred CCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH
Confidence 0111245567777655555665
Q ss_pred HHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEE
Q psy6409 1629 RSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~l 1705 (1832)
..|--+ +..-+...|...... -..+.....|..+++..+.. ....|+||||+|+..++.++..|...|+++..+
T Consensus 378 ~iY~l~---v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L 454 (762)
T TIGR03714 378 ETYSLS---VVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL 454 (762)
T ss_pred HHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 544322 222333444433322 23455677888888888765 467899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1706 Hg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
||.+.+.++..+...|+.| .|+|||++++||+||| ++.+|++|++|....+ +||+|||||.|++|.++
T Consensus 455 ~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 455 NAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred cCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 9999999998888888777 6999999999999999 9999999999988766 99999999999999999
Q ss_pred EEeeCCCh
Q psy6409 1777 SFCTKDDS 1784 (1832)
Q Consensus 1777 ~~~~~~d~ 1784 (1832)
+|++..|.
T Consensus 532 ~~is~eD~ 539 (762)
T TIGR03714 532 FFVSLEDD 539 (762)
T ss_pred EEEccchh
Confidence 99998764
No 150
>KOG0354|consensus
Probab=100.00 E-value=1.6e-31 Score=332.55 Aligned_cols=324 Identities=25% Similarity=0.300 Sum_probs=232.1
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
-+...++.||.+.+..++ |+|+||++|||+|||++++..++.|+...| +.++||+|||+.|+.|+...+
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p----------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP----------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC----------cceEEEeeCCchHHHHHHHHH
Confidence 456689999999999999 999999999999999999999999986533 478999999999999998889
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cCCceeEEEecchhhhcCCChHHHH-HH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQ-KI 903 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~~~~~lViDEaH~l~d~gf~~~i~-~I 903 (1832)
..++.+ ..+....||.........+....+|+|+||+.|.+.|..+... |+.+.++||||||+-....-...+. ..
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 888766 4556666675544444456668999999999999988776543 5899999999999876433222222 22
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh---------------------------
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY--------------------------- 956 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~--------------------------- 956 (1832)
+..- ....|++++|||+....+......
T Consensus 205 l~~k-------------------------~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~ 259 (746)
T KOG0354|consen 205 LDLK-------------------------NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQ 259 (746)
T ss_pred HHhh-------------------------hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCc
Confidence 2211 112399999999764433221110
Q ss_pred -----------------------cC-----------CCcEEEEc---cc-CCCCcce--EEE--EE--------------
Q psy6409 957 -----------------------LR-----------RPATVYIG---SV-GKPTERI--EQI--VY-------------- 980 (1832)
Q Consensus 957 -----------------------l~-----------~p~~v~~~---~~-~~~~~~i--~q~--~~-------------- 980 (1832)
+. +....+.. .. .....+. .+. +.
T Consensus 260 i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~ 339 (746)
T KOG0354|consen 260 IPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLIS 339 (746)
T ss_pred ccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhh
Confidence 00 00000000 00 0000000 000 00
Q ss_pred ----E----------------------------------------------cchhhHHHHHHHHHHc----CCCCCEEEE
Q psy6409 981 ----I----------------------------------------------LSEQDKRKKLMEVLNR----GVKKPVIIF 1006 (1832)
Q Consensus 981 ----~----------------------------------------------~~~~~k~~~L~~~l~~----~~~~~vIVF 1006 (1832)
. -.+..|+..|.+++.. .+..++|||
T Consensus 340 ~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIF 419 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIF 419 (746)
T ss_pred cchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEE
Confidence 0 0012334444444432 345689999
Q ss_pred EcccchHHHHHHHHHH---cCCcEEEEcC--------CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEc
Q psy6409 1007 VNQKKGADVLAKGLEK---LGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINY 1075 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~---~g~~v~~lhg--------~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~ 1075 (1832)
|.+|..|..|..+|.. .|+....+-| +|+|.++.++++.|++|.++|||||+|+++||||++|++||.|
T Consensus 420 ve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcY 499 (746)
T KOG0354|consen 420 VETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICY 499 (746)
T ss_pred EehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEe
Confidence 9999999999999973 2344444443 8999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1076 DMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1076 d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|...++...+||.|| ||+. .|.++.+++..+.
T Consensus 500 d~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 500 DYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred cCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 999999999999999 9975 5999999995443
No 151
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=3.8e-31 Score=334.50 Aligned_cols=342 Identities=23% Similarity=0.298 Sum_probs=254.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|..+.+.+..|+ |+.++||+|||++|.+|++.... .|..|+|++||.+||.|.+.++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH------------hCCCEEEEcCCHHHHHHHHHHH
Confidence 576 89999999999888876 99999999999999999964332 2556999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCCCh-
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMGFE- 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~gf~- 1572 (1832)
..+...+|+++.+++|+.+...+.... .++|+|+||++| .++++.+. +.+..+.++||||||.|+-...+
T Consensus 118 ~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 118 GQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred HHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 999999999999999999876554433 589999999999 88887763 46789999999999987531100
Q ss_pred ----------H-----HHHHHHHhCCCC----------------------------CCCCCCchh----hhHHHHHhh--
Q psy6409 1573 ----------P-----DVQKILEYMPVT----------------------------NLKPDTEDA----EDENKLLAN-- 1603 (1832)
Q Consensus 1573 ----------~-----~l~~Il~~l~~~----------------------------~~~~~~~~~----~~~~~l~~~-- 1603 (1832)
+ ....|...+... ....+.... .....+.+.
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 0 011111111100 000000000 000000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-+.+..+.+||.|......
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 355 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE 355 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH
Confidence 0 001123356789999877766
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+. + .-+...|....... ..+.....|..++.+.+. +..+.|+||||+|+..++.++..|...|+++
T Consensus 356 E~~~iY~l~v--v-~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~ 432 (745)
T TIGR00963 356 EFEKIYNLEV--V-VVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH 432 (745)
T ss_pred HHHHHhCCCE--E-EeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe
Confidence 6666664432 2 22333443332221 234455667777776553 3467899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCC-------CCEEEEeCCCCCHHHHHHHhcccccCCCccEE
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~-------v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a 1775 (1832)
..+||. +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|++|||||.|.+|.+
T Consensus 433 ~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s 510 (745)
T TIGR00963 433 NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSS 510 (745)
T ss_pred EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcce
Confidence 999998 889999999999999999999999999999998 56999999999999999999999999999999
Q ss_pred EEEeeCCCh
Q psy6409 1776 VSFCTKDDS 1784 (1832)
Q Consensus 1776 i~~~~~~d~ 1784 (1832)
.+|++..|.
T Consensus 511 ~~~ls~eD~ 519 (745)
T TIGR00963 511 RFFLSLEDN 519 (745)
T ss_pred EEEEeccHH
Confidence 999999874
No 152
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.5e-31 Score=355.40 Aligned_cols=296 Identities=23% Similarity=0.339 Sum_probs=212.3
Q ss_pred HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc----hhHHHHHHHHHHHhcCCC
Q psy6409 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT----RELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 757 ~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt----reLa~Qi~~~~~~~~~~~ 832 (1832)
+.+..+..++.+||+|+||||||+ ++|.+..-. .......+++..|. ++||.+++.++.. .+
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~---------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~---~l 146 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL---------GRGVKGLIGHTQPRRLAARTVANRIAEELET---EL 146 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc---------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhh---hh
Confidence 444455566778999999999999 688653311 01122357777885 5777777776654 22
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHH-HHHHHHhCCCC
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQKILEYMPVT 910 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~-i~~Il~~l~~~ 910 (1832)
|-.|++-+...+ ....+++|+|+|||+|++.+.... .|+.+++||||||| ++++.+|... +..++.
T Consensus 147 G~~VGY~vrf~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~----- 214 (1294)
T PRK11131 147 GGCVGYKVRFND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP----- 214 (1294)
T ss_pred cceeceeecCcc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-----
Confidence 333333222211 123479999999999999998765 59999999999999 6888887642 222211
Q ss_pred CCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------
Q psy6409 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------ 984 (1832)
Q Consensus 911 ~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~------ 984 (1832)
..+..|+|+||||++. +.|+..|.+.|. +.+.....+ ++..+..+..
T Consensus 215 ---------------------~rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~ 267 (1294)
T PRK11131 215 ---------------------RRPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTE 267 (1294)
T ss_pred ---------------------cCCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhh
Confidence 1235799999999974 578887777664 444332222 3333333321
Q ss_pred hhHHHHHHHHH---HcCCCCCEEEEEcccchHHHHHHHHHHcCCc---EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 985 QDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYN---ACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 985 ~~k~~~L~~~l---~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~---v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
.+....++..+ .....+.+||||+++.+++.+++.|...+++ +.++||+|++++|..+++. .|..+||||||
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc
Confidence 22333333332 2345678999999999999999999988765 6789999999999999986 58899999999
Q ss_pred cccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++++|||||+|++|||+|. |.|.++|+||+|||||. ..|.||.|+++++
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 9999999999999999873 34678999999999999 4799999999875
No 153
>KOG0352|consensus
Probab=99.98 E-value=8.1e-32 Score=305.40 Aligned_cols=332 Identities=23% Similarity=0.294 Sum_probs=253.7
Q ss_pred HHHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1413 EILEIIEK-IGYAEP-TPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1413 ~ll~~l~~-~g~~~p-tpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
.+-++|++ +|+..+ ++.|.+|+.++..+ .||.+++|||+||++||.||.|.+ +..+||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 34566765 687665 89999999999976 699999999999999999999842 4489999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH---h---hcCCcEEEeCHHHHHHH----HHccccccCCceeEE
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR---L---RLGCEIVIATPGRLIDV----LENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~---l---~~~~~IiVaTP~rl~~~----l~~~~~~l~~v~llV 1559 (1832)
.+|...+.+.+.++ .+.+..+.+-.+..+.... | +....++.-||+....- +.+....-.-+.|+|
T Consensus 71 iALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~v 146 (641)
T KOG0352|consen 71 IALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIV 146 (641)
T ss_pred HHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEE
Confidence 99999999999886 3444455555554433221 1 23467999999875422 223334456689999
Q ss_pred EccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH--HHhcCCC
Q psy6409 1560 LDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYLRRP 1635 (1832)
Q Consensus 1560 iDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~--~~~l~~p 1635 (1832)
+||||+..+|| |+|++-.+-+... .-.....+.+|||.++.+.+-+ ...|.+|
T Consensus 147 VDEAHCVSQWGHDFRPDYL~LG~LRS-----------------------~~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPDYLTLGSLRS-----------------------VCPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred echhhhHhhhccccCcchhhhhhHHh-----------------------hCCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 99999999998 8888776644322 2234568999999998887543 4456677
Q ss_pred cEEEEcccCCCCcceEEEEEEc----chhhHHHHHHHHHHhC-------------CCCcEEEEECchhHHHHHHHHHHHc
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYIL----SEQDKRKKLMEVLNRG-------------VKKPVIIFVNQKKGADVLAKGLEKL 1698 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~----~~~~k~~~l~~~l~~~-------------~~~~vIVFv~s~~~a~~l~~~L~~~ 1698 (1832)
+-++-.+.-+.+. ++-. .-.+-...|.++..+. ..+-.||||.|+..|+.++-.|...
T Consensus 204 VAiFkTP~FR~NL-----FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 204 VAIFKTPTFRDNL-----FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred HHhccCcchhhhh-----hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc
Confidence 6554333222211 1111 0122233444444321 2345899999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1699 ~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
|+++..+|+|+...+|.++.+.|.+|++.|++||..++.|||-|+|.+|||+++|.|++.|.|-.|||||.|....|-+|
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCChhHHHHHH
Q psy6409 1779 CTKDDSHLFYDLK 1791 (1832)
Q Consensus 1779 ~~~~d~~~~~~l~ 1791 (1832)
+...|...+.-|.
T Consensus 359 YsR~D~~~i~FLi 371 (641)
T KOG0352|consen 359 YSRQDKNALNFLV 371 (641)
T ss_pred ecccchHHHHHHH
Confidence 9999876665443
No 154
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=1.1e-30 Score=319.60 Aligned_cols=289 Identities=20% Similarity=0.243 Sum_probs=202.8
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1429 IQRQAIPIGLQNRD--IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1429 iQ~~ai~~il~g~d--vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
+|.++++.+..+.+ ++++||||||||++|++|++. .+.+++|++|+++|+.|+++.++.++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------------GENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------------cCCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 59999999999874 788999999999999999973 1335899999999999999999988633
Q ss_pred ----CCCeEEEEECCcchHHHHH--------------------HhhcCCcEEEeCHHHHHHHHHcccc--------ccCC
Q psy6409 1507 ----LGIRTVLVVGGLSREEQGF--------------------RLRLGCEIVIATPGRLIDVLENRYL--------VLNQ 1554 (1832)
Q Consensus 1507 ----~g~~v~~l~gg~~~~~~~~--------------------~l~~~~~IiVaTP~rl~~~l~~~~~--------~l~~ 1554 (1832)
.+..+..+.|....+.... .....++|+++||+.|..++..+.. .+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 3566777777633221100 0123578999999999877654321 2578
Q ss_pred ceeEEEccchhhhcCCChH-----HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH
Q psy6409 1555 CTYIVLDEADRMIDMGFEP-----DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629 (1832)
Q Consensus 1555 v~llViDEaH~ll~~gf~~-----~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~ 1629 (1832)
+++|||||+|.+..++... ....++... ....+++++|||+++.+...+.
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~i~lSAT~~~~~~~~l~ 200 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFF-------------------------ECRRKFVFLSATPDPALILRLQ 200 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHhh-------------------------hcCCcEEEEecCCCHHHHHHHH
Confidence 9999999999876433111 111111111 1225899999999998777766
Q ss_pred Hh--cCCCcEEEEcc-----------cCCC-------CcceEEEEEEcchhhHHHHH---HHHH----HhCCCCcEEEEE
Q psy6409 1630 SY--LRRPATVYIGS-----------VGKP-------TERIEQIVYILSEQDKRKKL---MEVL----NRGVKKPVIIFV 1682 (1832)
Q Consensus 1630 ~~--l~~p~~v~i~~-----------~~~~-------~~~i~q~~~~~~~~~k~~~l---~~~l----~~~~~~~vIVFv 1682 (1832)
.. +..|.....+. ...+ ...+.+.+.. ....+...+ .+.+ ......++||||
T Consensus 201 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~ 279 (357)
T TIGR03158 201 NAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIIL 279 (357)
T ss_pred hccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 54 34443222222 0000 0234444443 222222222 2222 223567899999
Q ss_pred CchhHHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHH
Q psy6409 1683 NQKKGADVLAKGLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~--~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yi 1760 (1832)
||+..|+.++..|...+ +.+..+||.+++.+|..+ ++.+|||||+++++|||+|.+ +|| ++ |.+.++|+
T Consensus 280 nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yi 350 (357)
T TIGR03158 280 DSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFW 350 (357)
T ss_pred CCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHh
Confidence 99999999999999864 578899999999998754 478999999999999999987 565 55 89999999
Q ss_pred HHhcccc
Q psy6409 1761 HRIGRTG 1767 (1832)
Q Consensus 1761 QRiGRaG 1767 (1832)
||+||+|
T Consensus 351 qR~GR~g 357 (357)
T TIGR03158 351 QRLGRLG 357 (357)
T ss_pred hhcccCC
Confidence 9999997
No 155
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=4.3e-30 Score=347.82 Aligned_cols=321 Identities=26% Similarity=0.320 Sum_probs=238.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+|++||.+++..++.+ |+|+++|||+|||++|++++...+.. .+.++|||+||++|+.|+...++++
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~~~ 81 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFRKF 81 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 47999999999988887 99999999999999999998876521 3578999999999999999999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
+...+..++.++|+.+... ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++.+...... |...+
T Consensus 82 ~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~---i~~~~- 156 (773)
T PRK13766 82 LNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVY---IAERY- 156 (773)
T ss_pred hCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHH---HHHHH-
Confidence 6544567888888887654 344556789999999999888877888899999999999999865432221 22111
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH---HHHHHhc------------------CCCcEEEEcc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE---RLARSYL------------------RRPATVYIGS 1642 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~---~~~~~~l------------------~~p~~v~i~~ 1642 (1832)
......+.+++||||+..... .++..+. ..+....+..
T Consensus 157 ---------------------~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v 215 (773)
T PRK13766 157 ---------------------HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRV 215 (773)
T ss_pred ---------------------HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEe
Confidence 111234578999999743221 1111111 0000000000
Q ss_pred --------------------------cCCC--Cc-------------ceEEE----------------------------
Q psy6409 1643 --------------------------VGKP--TE-------------RIEQI---------------------------- 1653 (1832)
Q Consensus 1643 --------------------------~~~~--~~-------------~i~q~---------------------------- 1653 (1832)
.+.. .. .+.+.
T Consensus 216 ~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (773)
T PRK13766 216 ELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELL 295 (773)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00000
Q ss_pred --------------------------------------------EEEcchhhHHHHHHHHHHh----CCCCcEEEEECch
Q psy6409 1654 --------------------------------------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQK 1685 (1832)
Q Consensus 1654 --------------------------------------------~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv~s~ 1685 (1832)
........|...|.+++.. ....++||||+++
T Consensus 296 ~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~ 375 (773)
T PRK13766 296 ETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYR 375 (773)
T ss_pred HHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcH
Confidence 0000112344455555543 4678999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHH
Q psy6409 1686 KGADVLAKGLEKLGYNACTLHGG--------KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1757 (1832)
Q Consensus 1686 ~~a~~l~~~L~~~~~~v~~lHg~--------ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~ 1757 (1832)
.+|+.|+..|...++.+..+||. |++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..
T Consensus 376 ~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~ 455 (773)
T PRK13766 376 DTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEI 455 (773)
T ss_pred HHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 99999999999999999999886 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1758 DYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
.|+||+||+||.|. |.+++++..+.
T Consensus 456 r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 456 RSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 99999999999864 88888888764
No 156
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=3.9e-30 Score=348.25 Aligned_cols=323 Identities=24% Similarity=0.316 Sum_probs=240.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|++||.+++..++.+ |+|+++|||+|||++|++++...+. ..+.++|||+||++|+.|+...++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-----------~~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-----------KKGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-----------hCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4458999999999998887 9999999999999999999987652 245789999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+++...+..+..++|+.+..+ ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+...+.
T Consensus 80 ~~~~~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~- 157 (773)
T PRK13766 80 KFLNIPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH- 157 (773)
T ss_pred HHhCCCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH-
Confidence 986554567888888877654 334555789999999999888877778899999999999999875332222222111
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH---HHHHHHHhc------------------CCCcEEEE
Q psy6409 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA---VERLARSYL------------------RRPATVYI 965 (1832)
Q Consensus 907 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~---v~~~~~~~l------------------~~p~~v~~ 965 (1832)
.......+++||||.... +..+...+. ..+....+
T Consensus 158 ------------------------~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~ 213 (773)
T PRK13766 158 ------------------------EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV 213 (773)
T ss_pred ------------------------hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE
Confidence 111235789999996322 122222111 00000000
Q ss_pred cc--------------------------cCCC--Cc-------------ceEEE--------------------------
Q psy6409 966 GS--------------------------VGKP--TE-------------RIEQI-------------------------- 978 (1832)
Q Consensus 966 ~~--------------------------~~~~--~~-------------~i~q~-------------------------- 978 (1832)
.. .+.. .. .+.+.
T Consensus 214 ~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (773)
T PRK13766 214 RVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVE 293 (773)
T ss_pred EeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00 00000
Q ss_pred ----------------------------------------------EEEcchhhHHHHHHHHHHc----CCCCCEEEEEc
Q psy6409 979 ----------------------------------------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVN 1008 (1832)
Q Consensus 979 ----------------------------------------------~~~~~~~~k~~~L~~~l~~----~~~~~vIVFv~ 1008 (1832)
........|...|.+++.. ..+.++||||+
T Consensus 294 ~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~ 373 (773)
T PRK13766 294 LLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQ 373 (773)
T ss_pred HHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 0000112345555666543 46679999999
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCC
Q psy6409 1009 QKKGADVLAKGLEKLGYNACTLHGG--------KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g~~v~~lhg~--------~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s 1080 (1832)
++..|+.|++.|...|+.+..+||. |++.+|..+++.|++|.++|||||+++++|+|+|++++||+||+|.+
T Consensus 374 ~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s 453 (773)
T PRK13766 374 YRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPS 453 (773)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCC
Confidence 9999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1081 ~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
...|+||+||+||.|. |.++++++.+.
T Consensus 454 ~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 454 EIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 9999999999999875 89999998764
No 157
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.5e-30 Score=318.46 Aligned_cols=289 Identities=20% Similarity=0.215 Sum_probs=201.2
Q ss_pred HHHHHHHHHHcCCc--EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 754 IQRQAIPIGLQNRD--IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 754 iQ~~ai~~il~grd--vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
+|.++++.+..+.+ ++++||||||||.+|++|++. .+.+++|++|+++|+.|+.+.+..+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------------GENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------------cCCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 59999999999874 788999999999999999973 1346899999999999999999887643
Q ss_pred ----CCCeEEEEEcCCchHHHH--------------------HHHhcCCceeecCHHHHHHHHHccc--------cccCC
Q psy6409 832 ----LGIRTVLVVGGLSREEQG--------------------FRLRLGCEIVIATPGRLIDVLENRY--------LVLNQ 879 (1832)
Q Consensus 832 ----~~i~v~~~~Gg~~~~~~~--------------------~~l~~~~~IlV~TP~rL~d~l~~~~--------~~l~~ 879 (1832)
.++.+..+.|.....-.. ......++|+++||+.|..++.+.. ..+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 356666666652211000 0012368899999999965443211 12578
Q ss_pred ceeEEEecchhhhcCCChH-----HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH
Q psy6409 880 CTYIVLDEADRMIDMGFEP-----DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~-----~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~ 954 (1832)
+++|||||+|.+..++... ....++.. .....+++++|||+|+.+.....
T Consensus 146 ~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~-------------------------~~~~~~~i~lSAT~~~~~~~~l~ 200 (357)
T TIGR03158 146 FSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRF-------------------------FECRRKFVFLSATPDPALILRLQ 200 (357)
T ss_pred CCEEEEecccccCcccchhhhhhhHHHHHHHh-------------------------hhcCCcEEEEecCCCHHHHHHHH
Confidence 9999999999765432111 11111111 11236899999999988777766
Q ss_pred Hh--cCCCcEEEEccc-----------CC-------CCcceEEEEEEcchhhHHHH---HHH----HHHcCCCCCEEEEE
Q psy6409 955 SY--LRRPATVYIGSV-----------GK-------PTERIEQIVYILSEQDKRKK---LME----VLNRGVKKPVIIFV 1007 (1832)
Q Consensus 955 ~~--l~~p~~v~~~~~-----------~~-------~~~~i~q~~~~~~~~~k~~~---L~~----~l~~~~~~~vIVFv 1007 (1832)
.. +..|.....+.. .. ....+.+.+.. ....+... +.+ .+....+.++||||
T Consensus 201 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~ 279 (357)
T TIGR03158 201 NAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIIL 279 (357)
T ss_pred hccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 54 455544333330 00 01234444433 22222222 222 22233567899999
Q ss_pred cccchHHHHHHHHHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHH
Q psy6409 1008 NQKKGADVLAKGLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g--~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yv 1085 (1832)
+++..|+.++..|...+ +.+..+||.+++.+|..+ ++.+|||||+++++|||||.+ +|| ++ |.+..+|+
T Consensus 280 nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yi 350 (357)
T TIGR03158 280 DSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFW 350 (357)
T ss_pred CCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHh
Confidence 99999999999999864 578899999999998764 478999999999999999987 566 55 88999999
Q ss_pred HHhcccc
Q psy6409 1086 HRIGRTG 1092 (1832)
Q Consensus 1086 Qr~GRaG 1092 (1832)
||+||||
T Consensus 351 qR~GR~g 357 (357)
T TIGR03158 351 QRLGRLG 357 (357)
T ss_pred hhcccCC
Confidence 9999997
No 158
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=3.3e-30 Score=344.37 Aligned_cols=310 Identities=21% Similarity=0.295 Sum_probs=218.4
Q ss_pred CCCCCcHHHH---HHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 747 GYAEPTPIQR---QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 747 g~~~pt~iQ~---~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.|....|+.. +.+..+..++.+|++|+||||||+ ++|.+..-. ......+++++.|.|..|..++.
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~---------~~~~~~~I~~tQPRRlAA~svA~ 129 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL---------GRGSHGLIGHTQPRRLAARTVAQ 129 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc---------CCCCCceEecCCccHHHHHHHHH
Confidence 3443444433 334444456778999999999999 678764311 01123478889999998888776
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch-hhhcCCChHH-HH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQ 901 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH-~l~d~gf~~~-i~ 901 (1832)
.+... +|..++..+|+....+. .....+.|+|+|||+|++.+.... .|+.+++||||||| ++++.+|.-. +.
T Consensus 130 RvA~e---lg~~lG~~VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk 203 (1283)
T TIGR01967 130 RIAEE---LGTPLGEKVGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLK 203 (1283)
T ss_pred HHHHH---hCCCcceEEeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHH
Confidence 66543 34444445554222111 123478999999999999987765 58999999999999 5888776543 33
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 981 (1832)
Q Consensus 902 ~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~ 981 (1832)
.++.. .+..++|+||||++ ...|+..|...|.. .+.....+ +...+..
T Consensus 204 ~il~~--------------------------rpdLKlIlmSATld--~~~fa~~F~~apvI-~V~Gr~~P---Vev~Y~~ 251 (1283)
T TIGR01967 204 QLLPR--------------------------RPDLKIIITSATID--PERFSRHFNNAPII-EVSGRTYP---VEVRYRP 251 (1283)
T ss_pred HHHhh--------------------------CCCCeEEEEeCCcC--HHHHHHHhcCCCEE-EECCCccc---ceeEEec
Confidence 33322 23578999999997 46788887766653 33322222 2222222
Q ss_pred cch------hhHHHHHHHHHH---cCCCCCEEEEEcccchHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHHhCC
Q psy6409 982 LSE------QDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGG 1049 (1832)
Q Consensus 982 ~~~------~~k~~~L~~~l~---~~~~~~vIVFv~s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~il~~F~~G 1049 (1832)
... .+....+...+. ....+.+|||++++.+++.+++.|...+ +.+.++||+|++++|..++..+ +
T Consensus 252 ~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~ 329 (1283)
T TIGR01967 252 LVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--S 329 (1283)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--C
Confidence 211 123333333322 2355789999999999999999998775 4588999999999999997764 3
Q ss_pred CCcEEEecccccccCCCcCcCEEEEcCCC------------------CCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1050 SKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1050 ~~~VLVaTdv~~rGlDip~v~~VI~~d~p------------------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
..+||||||++++|||||+|.+||+++++ .|.++|+||.|||||.| .|.||.|++.++
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 47999999999999999999999999954 36789999999999998 799999999875
No 159
>KOG0353|consensus
Probab=99.97 E-value=8.4e-30 Score=283.93 Aligned_cols=397 Identities=22% Similarity=0.267 Sum_probs=285.5
Q ss_pred cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 732 EASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+++.+....+.|++ +..++.+|.|..+|.+.+.|.|++++.|||.||++||.||+|. ....+||
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------------adg~alv 139 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------------ADGFALV 139 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------------cCCceEe
Confidence 34455577777765 5778899999999999999999999999999999999999983 2456999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HH-h--cCCceeecCHHHHHHH---HH--ccccccCC
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-R--LGCEIVIATPGRLIDV---LE--NRYLVLNQ 879 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l-~--~~~~IlV~TP~rL~d~---l~--~~~~~l~~ 879 (1832)
++|...|+..+.-.++.+ ||....+....+.++... .+ . ....+++.||+++... +. .+.+....
T Consensus 140 i~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred echhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999998887777775 666555655555433221 11 1 2357899999988532 21 23446677
Q ss_pred ceeEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 880 CTYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
+.+|-+||+|+-.+|| |+|++..+--. ....+...+++++||.++.+..-++..+
T Consensus 216 ~~~iaidevhccsqwghdfr~dy~~l~il-----------------------krqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 216 FKLIAIDEVHCCSQWGHDFRPDYKALGIL-----------------------KRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred eEEEeecceeehhhhCcccCcchHHHHHH-----------------------HHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 8999999999999998 88887764211 1112346799999999888777666665
Q ss_pred CCCcEEEE-cccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 958 RRPATVYI-GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035 (1832)
Q Consensus 958 ~~p~~v~~-~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~ 1035 (1832)
.-...+.+ .....++..++-.-..-++++-.+.+..+++.. .+...||||-+++.|+.++..|+.+|+.+..+|+.|.
T Consensus 273 ~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 273 CIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred hHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 43322222 223333322221112224455566666666643 4556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHH-----------------------------
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH----------------------------- 1086 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQ----------------------------- 1086 (1832)
+.++.-+-+.+-.|++.|+|||-.+++|||-|+|.+|||..+|+|++.|.|
T Consensus 353 p~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilev 432 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEV 432 (695)
T ss_pred ccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhh
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred --------------HhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCCcccccccccccccccccCCchhHHHHHHh
Q psy6409 1087 --------------RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1152 (1832)
Q Consensus 1087 --------------r~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 1152 (1832)
..|||||.+.+..||+++.-.|......+.++-+..+ .+..+.+.++..........+.+-
T Consensus 433 ctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~-----q~ly~mv~y~~d~s~crrv~laeh 507 (695)
T KOG0353|consen 433 CTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQMENTGI-----QKLYEMVRYAADISKCRRVKLAEH 507 (695)
T ss_pred hccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHHHHhhhH-----HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8899999999999999999888666666555433221 122333444332222222233332
Q ss_pred hhcCCCCCCchhhcCCCcccCCCCcc
Q psy6409 1153 MISSPVSTCPPELLNHPDAQHKPGTV 1178 (1832)
Q Consensus 1153 l~~~~~~~~~~~l~~~~~~~~~~~~~ 1178 (1832)
..+. -.|....++|+.|.+-..+
T Consensus 508 fde~---w~~~~c~k~cd~c~~~n~f 530 (695)
T KOG0353|consen 508 FDEA---WEPEACNKMCDNCCKDNAF 530 (695)
T ss_pred HHhh---cCHHHHHHHhhhhccCccc
Confidence 2221 2355566777777665443
No 160
>KOG0353|consensus
Probab=99.97 E-value=2.1e-29 Score=280.81 Aligned_cols=335 Identities=23% Similarity=0.318 Sum_probs=260.1
Q ss_pred CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1408 ASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
++.+......|++ +....++|.|.++|.+.+.|.+++++.|||.||++||.+|+|. ....+|||
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------------adg~alvi 140 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------------ADGFALVI 140 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------------cCCceEee
Confidence 4566777777775 5678899999999999999999999999999999999999984 35679999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hh---hcCCcEEEeCHHHHHHH---HHc--cccccCCc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL---RLGCEIVIATPGRLIDV---LEN--RYLVLNQC 1555 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l---~~~~~IiVaTP~rl~~~---l~~--~~~~l~~v 1555 (1832)
+|...|+..+.-.++.+ |+....+....+.++... .+ .....++..||+++... +.. ..+....+
T Consensus 141 ~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred chhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888888876 555555655555443211 11 12357899999998632 211 23556778
Q ss_pred eeEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcC
Q psy6409 1556 TYIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633 (1832)
Q Consensus 1556 ~llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~ 1633 (1832)
.+|-+||+|+..+|| |++.+..+-- +...-+...+++++||..+.+..-++..+.
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~i-----------------------lkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGI-----------------------LKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHH-----------------------HHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 999999999999998 7777665421 111224467999999999888776666654
Q ss_pred CCcEEE-EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 1634 RPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1711 (1832)
Q Consensus 1634 ~p~~v~-i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~ 1711 (1832)
-...+. .....+++...+-.-.+.++.+-...+..+++.. .+...||||-|++.|+.++..|..+|+.+..+|+.|.+
T Consensus 274 ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep 353 (695)
T KOG0353|consen 274 IEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEP 353 (695)
T ss_pred HHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCc
Confidence 322222 2223333322222223344555666677777644 55678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH------------------------------
Q psy6409 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH------------------------------ 1761 (1832)
Q Consensus 1712 ~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ------------------------------ 1761 (1832)
.++..+-+.|..|+++|+|||-.++.|||-|+|.+|||..+|.|+++|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevc 433 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVC 433 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred -------------HhcccccCCCccEEEEEeeCCCh
Q psy6409 1762 -------------RIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1762 -------------RiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
..|||||.|.++.|++|+.=.|.
T Consensus 434 tnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 434 TNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred ccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 78999999999999999886553
No 161
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=7.9e-29 Score=316.16 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=219.6
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~-g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
..++|||.+|+..++. | +..++++|||+|||++.+..+.. + +..+|||||+.+|+.|+.+.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 3789999999999884 3 47899999999999998765542 1 345999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc--------cccccCCceeEEEccchhhhcCCCh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--------RYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~--------~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
.+++......+..++|+.... ......|+|+|.+.+.....+ ..+.-..+++||+||||++..
T Consensus 319 ~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---- 389 (732)
T TIGR00603 319 KMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---- 389 (732)
T ss_pred HHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----
Confidence 998654445566666653221 122468999999877533221 112235789999999998853
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH-HHhcCCCcEEEEcccCCC-Cc--
Q psy6409 1573 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSVGKP-TE-- 1648 (1832)
Q Consensus 1573 ~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~-~~~l~~p~~v~i~~~~~~-~~-- 1648 (1832)
+.+..++..+. ....+++|||+........ -.++..|..+...-.... ..
T Consensus 390 ~~fr~il~~l~--------------------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~L 443 (732)
T TIGR00603 390 AMFRRVLTIVQ--------------------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFI 443 (732)
T ss_pred HHHHHHHHhcC--------------------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCcc
Confidence 44555555443 1246999999864322111 112223333222111000 00
Q ss_pred -ceE--EEEEE---------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1649 -RIE--QIVYI---------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1649 -~i~--q~~~~---------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.+. ..... .....|...+..++..+ ...++||||++..++..++..| ++
T Consensus 444 A~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~ 518 (732)
T TIGR00603 444 ANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GK 518 (732)
T ss_pred ccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CC
Confidence 000 00111 12233455555566544 6679999999999999998877 35
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC-CCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCCccEE-----
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLA----- 1775 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g-~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~~G~a----- 1775 (1832)
..+||.+++.+|..+++.|++| .+++||+|+++.+|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 519 ~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 519 PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccc
Confidence 6799999999999999999875 88999999999999999999999999998 5999999999999998766554
Q ss_pred --EEEeeCCChhHHHHHH
Q psy6409 1776 --VSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1776 --i~~~~~~d~~~~~~l~ 1791 (1832)
++|++.+..+.++.-+
T Consensus 599 ~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 599 FFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred eEEEEecCCchHHHHHHH
Confidence 8899998766655443
No 162
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=8e-29 Score=316.11 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHHc-C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~-g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..++|||.+|+..++. | +..|+++|||+|||++++..+.. + +..+|||||+.+|+.|+.+.|
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 4689999999999884 3 47899999999999998765431 1 345999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--------ccccCCceeEEEecchhhhcCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--------~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.++.......+..++|+.... ......|+|+|++++.....+. .+.-..+++||+||||++..
T Consensus 319 ~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---- 389 (732)
T TIGR00603 319 KMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---- 389 (732)
T ss_pred HHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----
Confidence 998654455666777654321 1224789999999875322211 12235789999999998853
Q ss_pred HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHhcCCCcEEEEccc-----C-C
Q psy6409 898 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSV-----G-K 970 (1832)
Q Consensus 898 ~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~l~~p~~v~~~~~-----~-~ 970 (1832)
+.+..++..+. ....+++|||+...-.... -.++-.|..+...-. + .
T Consensus 390 ~~fr~il~~l~--------------------------a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~L 443 (732)
T TIGR00603 390 AMFRRVLTIVQ--------------------------AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFI 443 (732)
T ss_pred HHHHHHHHhcC--------------------------cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCcc
Confidence 44444554442 1246999999853211110 011222322221110 0 0
Q ss_pred CCcceEEE---------------------EEEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 971 PTERIEQI---------------------VYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 971 ~~~~i~q~---------------------~~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
....+... ........|+..+..++..+ .+.++||||++...+..++..| ++
T Consensus 444 A~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~ 518 (732)
T TIGR00603 444 ANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GK 518 (732)
T ss_pred ccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CC
Confidence 00000000 00112234555555566543 6679999999999988888877 25
Q ss_pred EEEcCCCCHHHHHHHHHHHhCC-CCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCCCcEE-----
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGKEGLA----- 1100 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G-~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~~G~a----- 1100 (1832)
..+||++++.+|..+++.|+.| .+++||+|+++++|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 519 ~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A 598 (732)
T TIGR00603 519 PFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNA 598 (732)
T ss_pred ceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccc
Confidence 6799999999999999999875 88999999999999999999999999998 5999999999999999877765
Q ss_pred --EEEecCCCchHHH
Q psy6409 1101 --VSFCTKDDSHLFY 1113 (1832)
Q Consensus 1101 --i~~~~~~d~~~~~ 1113 (1832)
++|++.+......
T Consensus 599 ~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 599 FFYSLVSKDTQEMYY 613 (732)
T ss_pred eEEEEecCCchHHHH
Confidence 8999988655443
No 163
>KOG0922|consensus
Probab=99.96 E-value=9.5e-29 Score=299.81 Aligned_cols=308 Identities=18% Similarity=0.221 Sum_probs=247.0
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCCCC
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 834 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~~i 834 (1832)
.+.+..+.+++-+||+|+||||||+ .+|-+. .+. .....| ++.|..|+|..|..++++.. +++..+|-
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL--~ea------G~~~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYL--AEA------GFASSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHH--Hhc------ccccCC-cEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 3555666677889999999999999 666543 221 112233 49999999999998777654 44445555
Q ss_pred eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914 (1832)
Q Consensus 835 ~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~ 914 (1832)
.|++.+--.+.. ...+.|.++|.|+|++.+.... .|+++++||||||| .
T Consensus 126 ~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAH------------------------E 174 (674)
T KOG0922|consen 126 EVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAH------------------------E 174 (674)
T ss_pred eeeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechh------------------------h
Confidence 555544433322 2368899999999999888766 69999999999999 5
Q ss_pred CCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHH
Q psy6409 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 994 (1832)
Q Consensus 915 ~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~ 994 (1832)
++.+++.+.++++.....+....+|++|||+. .+.|..+|...|+....|...+....+.+......-.+.+..++++
T Consensus 175 Rsl~TDiLlGlLKki~~~R~~LklIimSATld--a~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~I 252 (674)
T KOG0922|consen 175 RSLHTDILLGLLKKILKKRPDLKLIIMSATLD--AEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQI 252 (674)
T ss_pred hhhHHHHHHHHHHHHHhcCCCceEEEEeeeec--HHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHH
Confidence 66788999999999999999999999999995 7788888888788777776655444333333334456677888888
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEKL----GY----NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~~----g~----~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
+...+++.+|||.+++++++.+++.|.+. +- -+.++||.|+.+++..+++....|..+|++||++++..|.|
T Consensus 253 h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 253 HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEe
Confidence 88888899999999999999999999765 11 25789999999999999999999999999999999999999
Q ss_pred cCcCEEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1067 KDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1067 p~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|+|.+||+-++ |.|.++..||.|||||.|. |+|+.+|+.++
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p-GkcyRLYte~~ 391 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP-GKCYRLYTESA 391 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC-ceEEEeeeHHH
Confidence 99999997666 5689999999999999985 99999999886
No 164
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=2.5e-28 Score=324.97 Aligned_cols=297 Identities=23% Similarity=0.356 Sum_probs=210.9
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC----cHHHHHHHHHHHHH-hcCC
Q psy6409 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP----TRELAQQIEEETNK-FGTP 1506 (1832)
Q Consensus 1432 ~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP----treLa~Qi~~~~~~-~~~~ 1506 (1832)
+.+..+..+..+|++|+||||||. .+|.+.+-.. ......+++..| +++||.++..++.. ++..
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g---------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG---------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC---------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 344455566678888999999999 5785432110 011224556667 67899999888875 4444
Q ss_pred CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHHHHHHHHhCCCC
Q psy6409 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPDVQKILEYMPVT 1585 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~l~~Il~~l~~~ 1585 (1832)
.|+.+ ..+.+ ...+++|+|+|||+|++.+.... .++++++||||||| ++++.+|... .+...++
T Consensus 150 VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~-- 214 (1294)
T PRK11131 150 VGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILG--YLKELLP-- 214 (1294)
T ss_pred eceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHH--HHHHhhh--
Confidence 34322 11111 23468999999999999988654 49999999999999 6888887643 1222222
Q ss_pred CCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------
Q psy6409 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------ 1659 (1832)
Q Consensus 1586 ~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~------ 1659 (1832)
..+..|+|+||||++. +.+...+.+.| .+.+..... .+...+.....
T Consensus 215 ---------------------~rpdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~ 267 (1294)
T PRK11131 215 ---------------------RRPDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTE 267 (1294)
T ss_pred ---------------------cCCCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCccc---cceEEEeecccccchhh
Confidence 1134689999999975 45666555555 344443222 24444444422
Q ss_pred hhHHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHHHcCCc---EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1660 QDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYN---ACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1660 ~~k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~---v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
.+....++..+. ....+.+||||++...++.++..|...+++ +..+||+|++.+|..+++. .|..+|||||+
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN 345 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN 345 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc
Confidence 122333333322 235678999999999999999999988765 6789999999999999886 58899999999
Q ss_pred cccccCCCCCCCEEEEeCC---------------C---CCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIKDVSMVINYDM---------------A---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~---------------P---~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
++++|||||+|.+||++++ | .|.++|+||+|||||. ..|.|+.|+++.+.
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 9999999999999999863 3 4668999999999999 68999999998654
No 165
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=3.1e-27 Score=309.65 Aligned_cols=320 Identities=21% Similarity=0.244 Sum_probs=221.0
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.||++|.+++..+..+ +++++.|+||||||.+|+.++...+. .|.++|||+||++|+.|+.+.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999974 78999999999999999988876542 36789999999999999999998
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHH---HHh-cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCC-hH--H
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGF---RLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF-EP--D 899 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~---~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf-~~--~ 899 (1832)
+. +|..+..++|+.+..+... .+. ..++|+|+||+.+. ..+.++++|||||+|...-... .+ .
T Consensus 212 ~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 212 AR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 75 3678999999988655433 233 34799999998873 4578899999999996542210 00 1
Q ss_pred HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 900 i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~ 979 (1832)
...+ ..........+++++|||.+......+.. .....+.+...........-.+
T Consensus 282 ~r~v-----------------------a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~ 336 (679)
T PRK05580 282 ARDL-----------------------AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEI 336 (679)
T ss_pred HHHH-----------------------HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEE
Confidence 1111 11112234579999999976444333221 1111122211110000011111
Q ss_pred EEcchhhH-------HHHHHHHHHc--CCCCCEEEEEcccc---------------------------------------
Q psy6409 980 YILSEQDK-------RKKLMEVLNR--GVKKPVIIFVNQKK--------------------------------------- 1011 (1832)
Q Consensus 980 ~~~~~~~k-------~~~L~~~l~~--~~~~~vIVFv~s~~--------------------------------------- 1011 (1832)
.......+ -..+++.+.. ..+.++|||+|++.
T Consensus 337 id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 416 (679)
T PRK05580 337 IDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGY 416 (679)
T ss_pred EechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcC
Confidence 11111000 0223333322 24557999988531
Q ss_pred ---------------------hHHHHHHHHHHc--CCcEEEEcCCCCH--HHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 1012 ---------------------GADVLAKGLEKL--GYNACTLHGGKGQ--EQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 1012 ---------------------~~~~l~~~L~~~--g~~v~~lhg~~~~--~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
.++.+++.|... +.++..+|+++.+ .+++.+++.|++|+++|||+|+++++|+|+
T Consensus 417 ~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 417 QEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCC
Confidence 466788888876 7889999999874 679999999999999999999999999999
Q ss_pred cCcCEEEEc--CCCCC----------HhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1067 KDVSMVINY--DMAKS----------IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1067 p~v~~VI~~--d~p~s----------~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
|+|++|+.+ |.+.+ ...|+|++|||||.+..|.+++.....+...+..+.
T Consensus 497 p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~ 558 (679)
T PRK05580 497 PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALL 558 (679)
T ss_pred CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 999999644 44432 367999999999999999999888777655555543
No 166
>KOG0947|consensus
Probab=99.95 E-value=2.8e-27 Score=291.11 Aligned_cols=330 Identities=21% Similarity=0.289 Sum_probs=251.5
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1418 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1418 l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
...++| .|-++|.+||-.+..|..|++.|+|.+|||+++..+|... ...+.+++|.+|-++|-+|-+
T Consensus 291 a~~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala------------q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 291 ALIYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA------------QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HhhCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH------------HhhccceEecchhhhhccchH
Confidence 345677 7999999999999999999999999999999998887632 235788999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
+.|+.-+...| .++|++.... .+.++|+|.+.|-++|.++.-.+.++.+|||||+|.+.+...+-.++.
T Consensus 358 RDFk~tF~Dvg----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 358 RDFKETFGDVG----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred HHHHHhccccc----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccccee
Confidence 99988665444 7899887543 578999999999999999888899999999999999999888888998
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 1657 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~ 1657 (1832)
++-.+| ...++|++|||.|+..+..-|-.-.+...+++.+....+-.++++++.-
T Consensus 427 ViIMlP-------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 427 VIIMLP-------------------------RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred eeeecc-------------------------ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 888777 5679999999999987754443333333444443322222233222110
Q ss_pred ch---------------------------------------------------------------hhHH--HHHHHHHHh
Q psy6409 1658 SE---------------------------------------------------------------QDKR--KKLMEVLNR 1672 (1832)
Q Consensus 1658 ~~---------------------------------------------------------------~~k~--~~l~~~l~~ 1672 (1832)
.+ ..+. ....+++++
T Consensus 482 ~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~ 561 (1248)
T KOG0947|consen 482 KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINH 561 (1248)
T ss_pred cceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHH
Confidence 00 0011 123344433
Q ss_pred ---CCCCcEEEEECchhHHHHHHHHHHHc---------------------------------------CCcEEEEcCCCC
Q psy6409 1673 ---GVKKPVIIFVNQKKGADVLAKGLEKL---------------------------------------GYNACTLHGGKG 1710 (1832)
Q Consensus 1673 ---~~~~~vIVFv~s~~~a~~l~~~L~~~---------------------------------------~~~v~~lHg~ls 1710 (1832)
..--|+||||=|++.|+..+..|... ..++++||||+-
T Consensus 562 L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlL 641 (1248)
T KOG0947|consen 562 LRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLL 641 (1248)
T ss_pred HhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccch
Confidence 34458999999999999999998642 246889999999
Q ss_pred HHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eCC----CCCHHHHHHHhcccccCC--CccEEEEEee
Q psy6409 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAG--KEGLAVSFCT 1780 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d~----P~s~~~yiQRiGRaGR~g--~~G~ai~~~~ 1780 (1832)
+--++-|+..|..|-++||+||.+++.|||.|+-.+|+. .|- --.+-+|+||+|||||.| ..|.+++++.
T Consensus 642 PivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 642 PIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred HHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 999999999999999999999999999999998777774 111 014689999999999987 5688888887
Q ss_pred CCChhHHHHHHHHhhcC
Q psy6409 1781 KDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1781 ~~d~~~~~~l~~~l~~~ 1797 (1832)
.. ..-...+..+++..
T Consensus 722 ~~-vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 722 DS-VPSAATLKRLIMGG 737 (1248)
T ss_pred CC-CCCHHHHhhHhcCC
Confidence 76 23344455555444
No 167
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=6.8e-26 Score=297.09 Aligned_cols=311 Identities=21% Similarity=0.241 Sum_probs=213.9
Q ss_pred CCcHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g---~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
.++++|.+++..+..+ +++++.|+||||||.+|+.++...+. .|..+|||+||++|+.|+++.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~------------~g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA------------QGKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999974 78999999999999999988776553 26789999999999999999998
Q ss_pred HhcCCCCCeEEEEECCcchHHHH---HHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC---hHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQG---FRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF---EPD 1574 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~---~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf---~~~ 1574 (1832)
+.+ |..++.++|+.+..+.. ..+. ..++|||+|++.+. ..+.++++|||||+|...-... ...
T Consensus 212 ~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 212 ARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 853 67789999998875443 2233 34799999998763 4578999999999996542211 001
Q ss_pred HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEccc--CCCCcceEE
Q psy6409 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV--GKPTERIEQ 1652 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~--~~~~~~i~q 1652 (1832)
...+.. ........+++++|||++......+.. .....+..... +.....+ .
T Consensus 282 ~r~va~-----------------------~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v-~ 335 (679)
T PRK05580 282 ARDLAV-----------------------VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV-E 335 (679)
T ss_pred HHHHHH-----------------------HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE-E
Confidence 111110 111224578999999987554333221 11111111111 0111111 1
Q ss_pred EEEEcchhh------HHHHHHHHHHhC--CCCcEEEEECchh--------------------------------------
Q psy6409 1653 IVYILSEQD------KRKKLMEVLNRG--VKKPVIIFVNQKK-------------------------------------- 1686 (1832)
Q Consensus 1653 ~~~~~~~~~------k~~~l~~~l~~~--~~~~vIVFv~s~~-------------------------------------- 1686 (1832)
.+....... --..+.+.+... .+.++|||+|++.
T Consensus 336 ~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 415 (679)
T PRK05580 336 IIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCG 415 (679)
T ss_pred EEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCc
Confidence 111100000 012233333322 3568999988631
Q ss_pred ----------------------HHHHHHHHHHHc--CCcEEEEcCCCCH--HHHHHHHHHhhCCCCcEEEEcccccccCC
Q psy6409 1687 ----------------------GADVLAKGLEKL--GYNACTLHGGKGQ--EQRELALNSLKGGSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1687 ----------------------~a~~l~~~L~~~--~~~v~~lHg~ls~--~~R~~il~~F~~g~~~VLVATdvl~~GID 1740 (1832)
.++.+++.|... +.++..+|+++++ .+++.+++.|++|+++|||+|+++++|+|
T Consensus 416 ~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d 495 (679)
T PRK05580 416 YQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHD 495 (679)
T ss_pred CCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCC
Confidence 456777777776 7889999999874 67899999999999999999999999999
Q ss_pred CCCCCEEEEe--CCCCC----------HHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1741 IKDVSMVINY--DMAKS----------IEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1741 ip~v~~VI~~--d~P~s----------~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|+|++|+.+ |.+.+ ...|+|++|||||.+..|.+++.....+
T Consensus 496 ~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 496 FPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred CCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999655 44432 3679999999999999999998766544
No 168
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=2.2e-27 Score=269.60 Aligned_cols=190 Identities=51% Similarity=0.828 Sum_probs=174.7
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||..|++.|++||+.++.|+|++++||||+|||++|++|++..+.... ...+|.+|||+||++|+.|+.
T Consensus 14 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~viii~p~~~L~~q~~ 86 (203)
T cd00268 14 IYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQALILAPTRELALQIA 86 (203)
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEEEEcCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998876532 135789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
..++.+....++...+++||.+.......+..+++|+|+||++|.+++.++...+.+++++|+||||.|.++||...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~ 166 (203)
T cd00268 87 EVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIRE 166 (203)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHH
Confidence 99999998889999999999999888888888999999999999999999888999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
++..++. .
T Consensus 167 ~~~~l~~------------------------------------------------------------------------~ 174 (203)
T cd00268 167 ILKLLPK------------------------------------------------------------------------D 174 (203)
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9887751 3
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEE
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVY 270 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1832)
+|+|+||||+|+.+..++..|+++|+.|+
T Consensus 175 ~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 203 (203)
T cd00268 175 RQTLLFSATMPKEVRDLARKFLRNPVRIL 203 (203)
T ss_pred cEEEEEeccCCHHHHHHHHHHCCCCEEeC
Confidence 89999999999999999999999999873
No 169
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=9.2e-26 Score=277.36 Aligned_cols=330 Identities=23% Similarity=0.325 Sum_probs=244.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.+.+.+..+.| ++|..|.+++.-|... .+=++++..|||||++++++|+..+. .|..+..+
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------------~G~Q~ALM 317 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------------AGYQAALM 317 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------------cCCeeEEe
Confidence 44566678899 8999999999999854 35699999999999999999998763 48899999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
|||--||.|.+..+.+++.++|++|..++|........ ..+.+| .+|||+|- .|....+.++++.++|+||
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDE 392 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDE 392 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEec
Confidence 99999999999999999999999999999987755433 344555 89999994 4555667899999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccC-cceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
-|+..- .=+..+. .... .+.+++||||+-|....+.. +.+-..-.+.
T Consensus 393 QHRFGV-----~QR~~L~-------------------------~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~Id 440 (677)
T COG1200 393 QHRFGV-----HQRLALR-------------------------EKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIID 440 (677)
T ss_pred cccccH-----HHHHHHH-------------------------HhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhc
Confidence 998631 1111111 1112 46799999998766544332 2222211111
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchh--------HHHHHHHHHHHc--CCcEEEEcCCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKK--------GADVLAKGLEKL--GYNACTLHGGK 1709 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~--------~a~~l~~~L~~~--~~~v~~lHg~l 1709 (1832)
........|...+.. ..+...+++.+... .+.++.+.|+-++ .|..++..|... ++.++.+||.|
T Consensus 441 ElP~GRkpI~T~~i~---~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm 517 (677)
T COG1200 441 ELPPGRKPITTVVIP---HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRM 517 (677)
T ss_pred cCCCCCCceEEEEec---cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCC
Confidence 111111223322222 23344444444332 5678999998754 456677777753 56799999999
Q ss_pred CHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
+++++..+++.|++|+++|||||+|.+.|||+|+.++.|.+|.-. -.++..|-.||+||.+..+.|++++.+.....-+
T Consensus 518 ~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~ 597 (677)
T COG1200 518 KPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAK 597 (677)
T ss_pred ChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHH
Confidence 999999999999999999999999999999999999999888643 6889999999999999999999999887644433
Q ss_pred HHHHHhh
Q psy6409 1789 DLKQMMI 1795 (1832)
Q Consensus 1789 ~l~~~l~ 1795 (1832)
.=...+.
T Consensus 598 ~RL~im~ 604 (677)
T COG1200 598 QRLKIMR 604 (677)
T ss_pred HHHHHHH
Confidence 3333333
No 170
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.1e-25 Score=276.51 Aligned_cols=318 Identities=24% Similarity=0.335 Sum_probs=241.1
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+.+.+..+.| +||..|.+++..|... -+=+++|..|||||+++++.++..+ ..|.++..+|
T Consensus 252 ~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai------------~~G~Q~ALMA 318 (677)
T COG1200 252 LAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI------------EAGYQAALMA 318 (677)
T ss_pred HHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH------------HcCCeeEEec
Confidence 3445577888 7999999999999853 3569999999999999999999766 3588999999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH---HHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE---QGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~---~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||--||.|.+..+.+++.++|++|..++|...... ....+..| .+|||||- .|-...+.++++.++|+||-
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEecc
Confidence 99999999999999999999999999999876443 33445556 99999994 44455668899999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccc-cceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
||.. -.=+..+. .+.. +..+++||||.=|. .++-..+.+-..-.+..
T Consensus 394 HRFG-----V~QR~~L~-------------------------~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdE 441 (677)
T COG1200 394 HRFG-----VHQRLALR-------------------------EKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDE 441 (677)
T ss_pred cccc-----HHHHHHHH-------------------------HhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhcc
Confidence 9743 22222221 1122 46789999996443 34444444433333333
Q ss_pred cCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch--------HHHHHHHHHHc--CCcEEEEcCCCC
Q psy6409 968 VGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG--------ADVLAKGLEKL--GYNACTLHGGKG 1035 (1832)
Q Consensus 968 ~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~--------~~~l~~~L~~~--g~~v~~lhg~~~ 1035 (1832)
.......|...+... .+...+++.+.. ..+.++.+.|+-.++ |..+++.|... +++++.+||.|+
T Consensus 442 lP~GRkpI~T~~i~~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 442 LPPGRKPITTVVIPH---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred CCCCCCceEEEEecc---ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 333333444443332 222233333222 256789999987654 55667777644 567999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
.+++..+++.|++|+++|||||.|.+.|||+|+.++.|.++.-+ ..++..|-.||+||.+..+.|++++.+..+
T Consensus 519 ~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 519 PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999988755 889999999999999999999999998863
No 171
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=4.4e-26 Score=258.97 Aligned_cols=202 Identities=50% Similarity=0.817 Sum_probs=182.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEE
Q psy6409 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809 (1832)
Q Consensus 730 f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~L 809 (1832)
|+++++++.+++.+.+.||..|+++|.++++.+++|+|++++||||+|||++|++|++..+.... ...+++++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 78899999999999999999999999999999999999999999999999999999998775421 13578999
Q ss_pred EEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecch
Q psy6409 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 810 ilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH 889 (1832)
|++||++|+.|+...+..+....++.+..++|+....+....+..+++|+|+||+.|.+++.+....+.+++++|+||||
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 99999999999999999998888999999999998777666666689999999999999998888888999999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
++.+.+|...+..++..++ ...|++++|||+++.+..++..++.+|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLP-------------------------KDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCC-------------------------cccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999888774 257999999999999999999999988765
No 172
>KOG0948|consensus
Probab=99.94 E-value=4.2e-27 Score=282.89 Aligned_cols=312 Identities=20% Similarity=0.275 Sum_probs=241.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+.| .+-|+|.+||.++-++..|++.|-|.+|||+++..+|...++. ..+|+|..|-++|-+|-|++
T Consensus 125 ~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------------kQRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 125 TYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------------KQRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred CCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------------cCeEEeeChhhhhcchhHHH
Confidence 3455 6889999999999999999999999999999999998876654 67899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+..-++. |..++|+++.+. .+..+|+|.+.|-.++.++.-.+..+.+|||||+|.|-|...+-.++.-+
T Consensus 192 l~~EF~D----VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 192 LLEEFKD----VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred HHHHhcc----cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 9875544 667899988653 57899999999999999998889999999999999998887776666655
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH--hcCCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS--YLRRPATVYIGSVGKPTERIEQIVYI- 1656 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~--~l~~p~~v~i~~~~~~~~~i~q~~~~- 1656 (1832)
-.+| .+.+.+++|||+|++.+..-|- .-..|..+... +..+..++|++++
T Consensus 261 IllP-------------------------~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYT--dyRPTPLQHyifP~ 313 (1041)
T KOG0948|consen 261 ILLP-------------------------DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYT--DYRPTPLQHYIFPA 313 (1041)
T ss_pred Eecc-------------------------ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEee--cCCCCcceeeeecC
Confidence 5555 4578999999999997643332 23455554332 2223334444332
Q ss_pred --------cchh-----hHHH--------------------------------------HHHHHHHhCCCCcEEEEECch
Q psy6409 1657 --------LSEQ-----DKRK--------------------------------------KLMEVLNRGVKKPVIIFVNQK 1685 (1832)
Q Consensus 1657 --------~~~~-----~k~~--------------------------------------~l~~~l~~~~~~~vIVFv~s~ 1685 (1832)
+++. ++.. .+...+-.....|+|||+=|+
T Consensus 314 ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSk 393 (1041)
T KOG0948|consen 314 GGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSK 393 (1041)
T ss_pred CCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecH
Confidence 1111 1122 222222223345899999999
Q ss_pred hHHHHHHHHHHHc---------------------------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1686 KGADVLAKGLEKL---------------------------------------GYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1686 ~~a~~l~~~L~~~---------------------------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
+.|+.+|..+..+ ..++++||||+-+--++.|.-.|.+|-+
T Consensus 394 keCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLv 473 (1041)
T KOG0948|consen 394 KECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLV 473 (1041)
T ss_pred hHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHH
Confidence 9999999887543 2368899999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEE----eCCCC----CHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVIN----YDMAK----SIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~----~d~P~----s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
+||+||.+++.|+|.|+-++|+- ||--. |--+|+||.|||||.|. .|.+|++++..
T Consensus 474 KvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 474 KVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 99999999999999998777763 33221 56789999999999874 58888888764
No 173
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.1e-26 Score=295.73 Aligned_cols=306 Identities=22% Similarity=0.281 Sum_probs=231.4
Q ss_pred HHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH-hcCCCCCeE
Q psy6409 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRT 836 (1832)
Q Consensus 758 ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~-~~~~~~i~v 836 (1832)
.+.++.++.-+|++||||||||+ .+|.+.+ .. ....+.++.++.|.|--|..+++.+.. ++...|-.|
T Consensus 58 i~~ai~~~~vvii~getGsGKTT--qlP~~ll--e~-------g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTT--QLPQFLL--EE-------GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHH--HHHHHHH--hh-------hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 33344455669999999999999 5555422 11 113466899999999888887776654 444445445
Q ss_pred EEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCC
Q psy6409 837 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 916 (1832)
Q Consensus 837 ~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~ 916 (1832)
++-+-..+ .....+.|-|+|.|.|+..+.... .|+.+++|||||||. ++
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHE------------------------RS 175 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHE------------------------RS 175 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhh------------------------hh
Confidence 54444333 223468999999999999998876 599999999999993 34
Q ss_pred chhHHHHHHHHhhccccc-cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHH
Q psy6409 917 EDAEDENKLLANYNSKKK-YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEV 994 (1832)
Q Consensus 917 ~~~~~~~~ll~~~~~~~~-~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~ 994 (1832)
.+++...+++..+..... +..+|++|||+. .++|...|.+.|+....+..+.....+........ -...+...+.+
T Consensus 176 l~tDilLgllk~~~~~rr~DLKiIimSATld--~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~ 253 (845)
T COG1643 176 LNTDILLGLLKDLLARRRDDLKLIIMSATLD--AERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDI 253 (845)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEecccC--HHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHH
Confidence 566677777777555554 699999999995 67788777777776666655443322211111111 23444555555
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEK----LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~ 1070 (1832)
+.....+.+|||.+...+++.+++.|.. ..+.++++||.|+.+++..+|+.-..|..+|++||++|+.+|.||+|.
T Consensus 254 ~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 254 HLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred hccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 5556788999999999999999999997 347899999999999999999999999889999999999999999999
Q ss_pred EEEEcCC------------------CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1071 MVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1071 ~VI~~d~------------------p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+||+-+. |.|.++..||.|||||.+. |.|+.+++.++
T Consensus 334 ~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p-GicyRLyse~~ 388 (845)
T COG1643 334 YVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP-GICYRLYSEED 388 (845)
T ss_pred EEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC-ceEEEecCHHH
Confidence 9997665 5588999999999999985 99999999864
No 174
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.6e-25 Score=284.99 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=240.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..|+ |+.++||+|||++|++|++..+. .|..++||+||++||.|.++.+
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al------------~G~~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAI------------SGRGVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHh------------cCCCEEEEcCCHHHHHHHHHHH
Confidence 454 67888877766666665 99999999999999999996542 2456999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-ccc-----CCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LVL-----NQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-~~l-----~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++||.+...+...+ .++|+||||++| .|+|..+. +.+ ..+.++||||||.|+ |..
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 999999999999999999877664443 699999999999 89987763 333 589999999999875 211
Q ss_pred -------------ChHHHHHHHHhCCCC--------C-C--CC----CCch-hHHHHHHH--------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT--------N-L--KP----DTED-AEDENKLL-------------------- 926 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~--------~-~--~~----~~~~-~~~~~~ll-------------------- 926 (1832)
....+..++..+... . . .. -++. ......++
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 111122222222110 0 0 00 0000 00000000
Q ss_pred --------Hhhccc-------------------------------------------------------------cccce
Q psy6409 927 --------ANYNSK-------------------------------------------------------------KKYRQ 937 (1832)
Q Consensus 927 --------~~~~~~-------------------------------------------------------------~~~~q 937 (1832)
+..... +-+..
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 000000 01113
Q ss_pred EEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHH
Q psy6409 938 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGAD 1014 (1832)
Q Consensus 938 ~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~ 1014 (1832)
+.++|+|.......|...|--+ +..-+...|...... -..+.....|...+.+.+.. ..+.|+||||+|+..++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 3344555444444444444221 222222333322221 23445567777777766533 46779999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcC--------------------------
Q psy6409 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD-------------------------- 1068 (1832)
Q Consensus 1015 ~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~-------------------------- 1068 (1832)
.++..|...|+++.++||.+.+.++..+.+.|+.|. |+||||+|+||+||.=
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 9999999999999851
Q ss_pred ------------cCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1069 ------------VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1069 ------------v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
==+||--..+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12788777788888889999999999999999999998873
No 175
>KOG0947|consensus
Probab=99.94 E-value=5.3e-26 Score=279.93 Aligned_cols=323 Identities=21% Similarity=0.284 Sum_probs=245.2
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++| +|-.+|++||-.+..|..|+|.|+|.+|||+++-.+|... ...+.+++|.+|-++|-+|-++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala------------q~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA------------QKHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH------------HhhccceEecchhhhhccchHHH
Confidence 3456 6889999999999999999999999999999987766432 23578999999999999998888
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
|+.-....| .++|+... ...+.++|+|.+.|-.+|-++.-.+.++.+|||||+|.+.|..++-+++.++
T Consensus 360 Fk~tF~Dvg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 360 FKETFGDVG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred HHHhccccc----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeee
Confidence 887644433 78888774 3468899999999999998888889999999999999999999999999998
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEEEEcc
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIGSVGKPTERIEQIVYILS 983 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-~~p~~v~~~~~~~~~~~i~q~~~~~~ 983 (1832)
-.+| ...++|++|||.|+..+ |+.... .....+++.+....+..++++++.-.
T Consensus 429 IMlP-------------------------~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~ 482 (1248)
T KOG0947|consen 429 IMLP-------------------------RHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKK 482 (1248)
T ss_pred eecc-------------------------ccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEecc
Confidence 8887 34799999999999776 554432 22333444444333333443332110
Q ss_pred h---------------------------------------------------------------hhH-----HHHHHHHH
Q psy6409 984 E---------------------------------------------------------------QDK-----RKKLMEVL 995 (1832)
Q Consensus 984 ~---------------------------------------------------------------~~k-----~~~L~~~l 995 (1832)
+ .++ ...++..|
T Consensus 483 ~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L 562 (1248)
T KOG0947|consen 483 SLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHL 562 (1248)
T ss_pred ceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHH
Confidence 0 000 11222233
Q ss_pred HcCCCCCEEEEEcccchHHHHHHHHHHc---------------------------------------CCcEEEEcCCCCH
Q psy6409 996 NRGVKKPVIIFVNQKKGADVLAKGLEKL---------------------------------------GYNACTLHGGKGQ 1036 (1832)
Q Consensus 996 ~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------------------------------------g~~v~~lhg~~~~ 1036 (1832)
....--|+||||-+++.|+..++.|... .-++++||||+-+
T Consensus 563 ~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLP 642 (1248)
T KOG0947|consen 563 RKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLP 642 (1248)
T ss_pred hhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchH
Confidence 3334458999999999999999999432 1247899999999
Q ss_pred HHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CCCHhHHHHHhcccccCCCC--cEEEEEecC
Q psy6409 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAGKE--GLAVSFCTK 1106 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~ 1106 (1832)
--.+-+.-.|..|-++||+||.++++|||.|+-++|+.-=. --.+-.|+|++|||||-|-+ |++|+++..
T Consensus 643 ivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 643 IVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 99999999999999999999999999999999888873211 12678999999999998855 888887776
Q ss_pred CCchHHHHHHHH
Q psy6409 1107 DDSHLFYDLKQM 1118 (1832)
Q Consensus 1107 ~d~~~~~~l~~~ 1118 (1832)
. ..-...+..+
T Consensus 723 ~-vp~~a~l~~l 733 (1248)
T KOG0947|consen 723 S-VPSAATLKRL 733 (1248)
T ss_pred C-CCCHHHHhhH
Confidence 5 2333444443
No 176
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=2.8e-25 Score=283.35 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=130.6
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 731 KEASLPTEILEIIE-----KIGYAEP---TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 731 ~~~~L~~~l~~~l~-----~~g~~~p---t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+.+++...+...+. ..||..| +|+|.+++|.++.++++|+.|+||+|||++|+||++..+..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 35668888887776 6899999 99999999999999999999999999999999999976532
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccccccC---
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRYLVLN--- 878 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~~~l~--- 878 (1832)
+..++||+||++||.|+++.+..+...+|+++++++||.+..++...+ +++|+||||++| .|++..+.+.++
T Consensus 135 --g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~ 210 (970)
T PRK12899 135 --GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEE 210 (970)
T ss_pred --cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHH
Confidence 223899999999999999999999999999999999999988876554 699999999999 999988766555
Q ss_pred ----CceeEEEecchhhhc
Q psy6409 879 ----QCTYIVLDEADRMID 893 (1832)
Q Consensus 879 ----~~~~lViDEaH~l~d 893 (1832)
.+.++||||||.|+-
T Consensus 211 ~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 211 QVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hhcccccEEEEechhhhhh
Confidence 458999999999763
No 177
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.1e-26 Score=293.44 Aligned_cols=321 Identities=22% Similarity=0.284 Sum_probs=243.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
.....++| .|-++|.+|+.++-.|.+|+++||||||||+++..++...+. ++.+++|.+|.++|.+|
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------------~~qrviYTsPIKALsNQ 177 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------------DGQRVIYTSPIKALSNQ 177 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH------------cCCceEeccchhhhhhh
Confidence 34456788 799999999999999999999999999999999998876553 36669999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
.+..+...+....--+..++|+.+.+. ++.++|+|.+.|-+++..+...+..+..|||||+|.|.+...+..+
T Consensus 178 Kyrdl~~~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 178 KYRDLLAKFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred HHHHHHHHhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhH
Confidence 999987654332222567889888653 6889999999999999998888999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIGSVGKPTERIEQIV 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-~~p~~v~i~~~~~~~~~i~q~~ 1654 (1832)
+.++-.+| ...++++||||+|+..+.-.|... .......+....++.+ +.+++
T Consensus 251 EE~Ii~lP-------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP-L~~~~ 304 (1041)
T COG4581 251 EEVIILLP-------------------------DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP-LEHFV 304 (1041)
T ss_pred HHHHHhcC-------------------------CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC-eEEEE
Confidence 99998887 456899999999998664333322 1222222223333332 22222
Q ss_pred EE-------cchhhH-----------------------------------------------HHHHHHHHHhCCCCcEEE
Q psy6409 1655 YI-------LSEQDK-----------------------------------------------RKKLMEVLNRGVKKPVII 1680 (1832)
Q Consensus 1655 ~~-------~~~~~k-----------------------------------------------~~~l~~~l~~~~~~~vIV 1680 (1832)
+. +.+..+ ...+...+......|+|+
T Consensus 305 ~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~ 384 (1041)
T COG4581 305 YVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIV 384 (1041)
T ss_pred ecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEE
Confidence 11 111110 011222233334468999
Q ss_pred EECchhHHHHHHHHHHHc-----------------------------------------CCcEEEEcCCCCHHHHHHHHH
Q psy6409 1681 FVNQKKGADVLAKGLEKL-----------------------------------------GYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1681 Fv~s~~~a~~l~~~L~~~-----------------------------------------~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
||=|++.|+..+..+..+ ..++++||+||-+..+..+..
T Consensus 385 F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~ 464 (1041)
T COG4581 385 FSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEE 464 (1041)
T ss_pred EEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHH
Confidence 999999999888766421 124678999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEE----eC----CCCCHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD----MAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d----~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
.|..|-++||+||.+++.|+|.|.=++|+- +| ..-+...|+|+.|||||.|- .|.+++...+.
T Consensus 465 Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 465 LFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred HHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999999999997666652 22 13368999999999999885 48888775554
No 178
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=8.8e-26 Score=302.21 Aligned_cols=299 Identities=21% Similarity=0.292 Sum_probs=207.5
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 1512 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~ 1512 (1832)
.+..+..+..+|++|+||||||. .+|.+.+-.. ......+++..|.|--|..++..+.+. +|..+.
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~---------~~~~~~I~~tQPRRlAA~svA~RvA~e---lg~~lG 140 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTT--QLPKICLELG---------RGSHGLIGHTQPRRLAARTVAQRIAEE---LGTPLG 140 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC---------CCCCceEecCCccHHHHHHHHHHHHHH---hCCCcc
Confidence 44444456678999999999999 5676532110 112346777889887777666555442 233333
Q ss_pred EEECCc-chHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch-hhhcCCChHH-HHHHHHhCCCCCCCC
Q psy6409 1513 LVVGGL-SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD-RMIDMGFEPD-VQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1513 ~l~gg~-~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH-~ll~~gf~~~-l~~Il~~l~~~~~~~ 1589 (1832)
..+|.. ..+.+ ...+..|+|+|+|.|+..+.... .+..+++||||||| ++++.+|.-. +..++...
T Consensus 141 ~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r------- 209 (1283)
T TIGR01967 141 EKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR------- 209 (1283)
T ss_pred eEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-------
Confidence 344432 11111 23467899999999999887654 48999999999999 6888776543 34443322
Q ss_pred CCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch------hhHH
Q psy6409 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE------QDKR 1663 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~------~~k~ 1663 (1832)
...++|+||||+.. ..+...+...| .+.+.....+ +...+..... ....
T Consensus 210 -------------------pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~ 264 (1283)
T TIGR01967 210 -------------------PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRTYP---VEVRYRPLVEEQEDDDLDQL 264 (1283)
T ss_pred -------------------CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCccc---ceeEEecccccccchhhhHH
Confidence 24689999999974 45666555545 3444332222 3333333221 1233
Q ss_pred HHHHHHHHh---CCCCcEEEEECchhHHHHHHHHHHHcC---CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1664 KKLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLG---YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1664 ~~l~~~l~~---~~~~~vIVFv~s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..++..+.. ...+.+|||+++...++.++..|...+ +.+..+||+|++++|..++..+ +..+|||||+++++
T Consensus 265 ~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEt 342 (1283)
T TIGR01967 265 EAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAET 342 (1283)
T ss_pred HHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHh
Confidence 333333322 245789999999999999999998764 4588899999999999986654 34689999999999
Q ss_pred cCCCCCCCEEEEeCCC------------------CCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1738 GIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P------------------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||+|.+||+++++ .|.++|+||+|||||.| .|.|+.|+++.+.
T Consensus 343 SLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 343 SLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 9999999999998854 36789999999999997 9999999997654
No 179
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.5e-25 Score=281.96 Aligned_cols=300 Identities=20% Similarity=0.273 Sum_probs=199.1
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH
Q psy6409 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848 (1832)
Q Consensus 769 Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~ 848 (1832)
++.||||||||.+|+..+...+ ..|.++|||+|+++|+.|+.+.|++. ++..+..++|+.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l------------~~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL------------ALGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH------------HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHH
Confidence 4689999999999977665433 13678999999999999999999875 36678889998876543
Q ss_pred ---HHHHhc-CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCC-hH--HHHHHHHhCCCCCCCCCCchhHH
Q psy6409 849 ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF-EP--DVQKILEYMPVTNLKPDTEDAED 921 (1832)
Q Consensus 849 ---~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf-~~--~i~~Il~~l~~~~~~~~~~~~~~ 921 (1832)
+..+.. .++|||||+..+. ..+.++++|||||+|...-++. .+ ....+
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~------------------ 120 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV------------------ 120 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHH------------------
Confidence 333333 4799999998772 3578899999999997653221 01 11111
Q ss_pred HHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhH----HHHHHHHHHc
Q psy6409 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK----RKKLMEVLNR 997 (1832)
Q Consensus 922 ~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k----~~~L~~~l~~ 997 (1832)
..+.......+++++|||.+. +.+....-.....+...............+.......+ -..|++.+..
T Consensus 121 -----a~~ra~~~~~~vil~SATPsl--es~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 121 -----AVYRAKKFNCPVVLGSATPSL--ESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred -----HHHHHHhcCCCEEEEeCCCCH--HHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 111122245789999999553 33332211111111111111000111111111111110 1223333322
Q ss_pred --CCCCCEEEEEcccch------------------------------------------------------------HHH
Q psy6409 998 --GVKKPVIIFVNQKKG------------------------------------------------------------ADV 1015 (1832)
Q Consensus 998 --~~~~~vIVFv~s~~~------------------------------------------------------------~~~ 1015 (1832)
..+.++|||+|++.- ++.
T Consensus 194 ~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~ 273 (505)
T TIGR00595 194 TLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQ 273 (505)
T ss_pred HHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHH
Confidence 145689999887642 578
Q ss_pred HHHHHHHc--CCcEEEEcCCCCHHHH--HHHHHHHhCCCCcEEEecccccccCCCcCcCEEE--EcCC----CC------
Q psy6409 1016 LAKGLEKL--GYNACTLHGGKGQEQR--ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI--NYDM----AK------ 1079 (1832)
Q Consensus 1016 l~~~L~~~--g~~v~~lhg~~~~~~R--~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI--~~d~----p~------ 1079 (1832)
+.+.|... +.++..+|+++++..+ +.+++.|++|+++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 88888877 7889999999987766 8999999999999999999999999999999886 5554 31
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
....|+|++|||||.+..|.+++.+...+...+..+
T Consensus 354 ~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHH
Confidence 356799999999999999999977655554444443
No 180
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3.9e-25 Score=283.67 Aligned_cols=342 Identities=23% Similarity=0.291 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-..-++..|+ |+.+.||+|||++|.+|++.... .|..+-|++||..||.|.++.+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL------------TGKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH------------cCCCEEEEecCHHHHHHHHHHH
Confidence 465 78999998887777775 99999999999999999963321 2445779999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|+++++++|+++..++...+ .++|+|+||++| .|+|.... ..+..+.++||||||.|+ |..
T Consensus 143 ~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 143 GPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 999999999999999999987776554 599999999999 89987664 247789999999999865 211
Q ss_pred -------------ChHHHHHHHHhCCCC-----------------------------CCCC-------------------
Q psy6409 896 -------------FEPDVQKILEYMPVT-----------------------------NLKP------------------- 914 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~-----------------------------~~~~------------------- 914 (1832)
....+..++..+... ++..
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 112222333332110 0000
Q ss_pred --------------------------CCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHH
Q psy6409 915 --------------------------DTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 915 --------------------------~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~ 950 (1832)
.....+.+...+..-+. .+.+..+.++|.|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 00000001111100000 0223467788999876666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v 1027 (1832)
.|...|--+ +..-+...+...... -..+.....|...+.+.+.. ..+.|+||||+|+..++.++..|...|+++
T Consensus 381 E~~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 381 EFREIYNLD---VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHhCCC---EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 666665432 222223333333332 23445677888888888855 567799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc--------------------------------------
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------- 1069 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------------------------- 1069 (1832)
..+||. +.+|+..+..|+.|...|+||||+|+||+||+=-
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999995 8899999999999999999999999999999642
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1070 ~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
=+||-...|.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2888888899999999999999999999999999998874
No 181
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=5.6e-25 Score=289.07 Aligned_cols=311 Identities=19% Similarity=0.219 Sum_probs=201.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...|+|+|..+......+..+|+.||||+|||.++++++...+.. .....++|..||+++++|++..+.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~----------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ----------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 348999999886554445678999999999999988776643321 2346899999999999999999876
Q ss_pred hcCCC--CCeEEEEECCcchHH-----------------------HHHH-hhc---CCcEEEeCHHHHHHHH-Hcccccc
Q psy6409 1503 FGTPL--GIRTVLVVGGLSREE-----------------------QGFR-LRL---GCEIVIATPGRLIDVL-ENRYLVL 1552 (1832)
Q Consensus 1503 ~~~~~--g~~v~~l~gg~~~~~-----------------------~~~~-l~~---~~~IiVaTP~rl~~~l-~~~~~~l 1552 (1832)
+.... ...+..++|...... +++. .++ -.+|+|||+..++..+ ..+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 32211 245666666543211 1111 001 2689999998877443 3333333
Q ss_pred CCc----eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH
Q psy6409 1553 NQC----TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628 (1832)
Q Consensus 1553 ~~v----~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~ 1628 (1832)
..+ ++|||||+|.+ +.-....+..++.++.. ....+|++|||+|......+
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~------------------------~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ------------------------AGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 333 48999999954 32223334444444321 12458999999998876433
Q ss_pred -HHhcCC-C--------cEEEEcc--------cCCCC-cceEEEE--EEc--ch-hhHHHHHHHHHHh-CCCCcEEEEEC
Q psy6409 1629 -RSYLRR-P--------ATVYIGS--------VGKPT-ERIEQIV--YIL--SE-QDKRKKLMEVLNR-GVKKPVIIFVN 1683 (1832)
Q Consensus 1629 -~~~l~~-p--------~~v~i~~--------~~~~~-~~i~q~~--~~~--~~-~~k~~~l~~~l~~-~~~~~vIVFv~ 1683 (1832)
..|-.. + ....... ..... ......+ ... .. ......+..++.. ..++++|||||
T Consensus 489 ~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~N 568 (878)
T PRK09694 489 LDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICN 568 (878)
T ss_pred HHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEEC
Confidence 323111 0 0000000 00000 0001111 111 11 1111222222222 24678999999
Q ss_pred chhHHHHHHHHHHHcC---CcEEEEcCCCCHHHH----HHHHHHh-hCCC---CcEEEEcccccccCCCCCCCEEEEeCC
Q psy6409 1684 QKKGADVLAKGLEKLG---YNACTLHGGKGQEQR----ELALNSL-KGGS---KDILVATDVAGRGIDIKDVSMVINYDM 1752 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~---~~v~~lHg~ls~~~R----~~il~~F-~~g~---~~VLVATdvl~~GIDip~v~~VI~~d~ 1752 (1832)
|++.|..++..|...+ ..+..+||.++..+| ..+++.| ++|+ ..|||||+++++|||| +++++|....
T Consensus 569 TV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 569 LVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred CHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC
Confidence 9999999999999764 679999999999999 4577888 6776 4799999999999999 5899999988
Q ss_pred CCCHHHHHHHhcccccCCC
Q psy6409 1753 AKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1753 P~s~~~yiQRiGRaGR~g~ 1771 (1832)
| ++.|+||+||+||.+.
T Consensus 648 P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 648 P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred C--HHHHHHHHhccCCCCC
Confidence 8 8899999999999875
No 182
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=1.3e-24 Score=287.27 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHH-HHcCCcEEEEcCCCCHHHHHHHHHHhhCC--CCcEEEEcccccc
Q psy6409 1661 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATDVAGR 1737 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L-~~~~~~v~~lHg~ls~~~R~~il~~F~~g--~~~VLVATdvl~~ 1737 (1832)
.|...|.++++.....++||||+++.++..|+..| ...|+.+..+||+|++.+|..+++.|+++ .++|||||+++++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 46667888888777889999999999999999999 46799999999999999999999999984 6999999999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|+|++.+++|||||+|+|+..|+||+||+||.|+.+.+.+++.......-..+.++
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988777765543333333333
No 183
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.2e-24 Score=278.81 Aligned_cols=342 Identities=20% Similarity=0.248 Sum_probs=242.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--++..| -|+.++||+|||++|.+|++..... |..|+||+||++||.|.+.++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m 143 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWM 143 (896)
T ss_pred cCC-CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHH
Confidence 465 6788887766555555 4999999999999999999965432 456999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-ccc-----CCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LVL-----NQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-~~l-----~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|+++.+++||.+...+.... .++|+|+||++| .++|+.+. +.+ ..+.++||||||.|+=+.
T Consensus 144 ~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArt 221 (896)
T PRK13104 144 KPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEART 221 (896)
T ss_pred HHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCC
Confidence 999999999999999998877664443 689999999999 89998763 333 589999999999865211
Q ss_pred -------------ChHHHHHHHHhCCCC-------CC------CCC--Cch-hhhHHH----------------------
Q psy6409 1571 -------------FEPDVQKILEYMPVT-------NL------KPD--TED-AEDENK---------------------- 1599 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~-------~~------~~~--~~~-~~~~~~---------------------- 1599 (1832)
....+..++..+... -+ +.. ++. ......
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~ 301 (896)
T PRK13104 222 PLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIML 301 (896)
T ss_pred ceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhH
Confidence 111222222222111 00 000 000 000000
Q ss_pred -------HHhhh--ccc----------------------------------------------------------cCcce
Q psy6409 1600 -------LLANY--NSK----------------------------------------------------------KKYRQ 1612 (1832)
Q Consensus 1600 -------l~~~~--~~~----------------------------------------------------------~~~~q 1612 (1832)
+.+.. ... +.+..
T Consensus 302 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~k 381 (896)
T PRK13104 302 MHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNK 381 (896)
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcch
Confidence 00000 000 00112
Q ss_pred EEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHH
Q psy6409 1613 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGAD 1689 (1832)
Q Consensus 1613 ~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~ 1689 (1832)
+.+||.|......++..-|--+ +...+...|...... -..+.....|..++.+.+.. ..+.|+||||+|+..++
T Consensus 382 LsGMTGTa~te~~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 382 LSGMTGTADTEAYEFQQIYNLE---VVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hccCCCCChhHHHHHHHHhCCC---EEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 3356666555555555544322 222233444433322 23445667777777776633 47789999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------------------------
Q psy6409 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK--------------------------- 1742 (1832)
Q Consensus 1690 ~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip--------------------------- 1742 (1832)
.++..|...|+++.++||.+.+.++..+.+.|+.|. |+|||++++||+||.
T Consensus 459 ~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~ 536 (896)
T PRK13104 459 FLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKE 536 (896)
T ss_pred HHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999995 999999999999985
Q ss_pred -----------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 -----------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 -----------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.=-+||-...+.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 537 ~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 537 WQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 123788888888888889999999999999999999997764
No 184
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=2.4e-25 Score=279.15 Aligned_cols=291 Identities=22% Similarity=0.230 Sum_probs=203.2
Q ss_pred CCCcHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~----g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..|+|+|.+|+..+.. ++..++++|||+|||++++..+-.. +..+|||||+.+|+.|+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------------cCCEEEEECcHHHHHHHHHH
Confidence 3799999999999998 8899999999999999987766432 22399999999999999877
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.++.... ..+..+.|+.... .. ..|+|+|.+.+...-....+....+++||||||||+....| ..+.
T Consensus 100 ~~~~~~~~-~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~ 167 (442)
T COG1061 100 LKKFLLLN-DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY----RRIL 167 (442)
T ss_pred HHHhcCCc-cccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH----HHHH
Confidence 77764322 1233333333221 11 46999999988764211223344799999999999875544 3343
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcce-EEEEEccCChHHHHHHHH--hcCCCcEEEEcccCCCC----cceEE
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVERLARS--YLRRPATVYIGSVGKPT----ERIEQ 1652 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q-~v~~SATl~~~~~~~~~~--~l~~p~~v~i~~~~~~~----~~i~q 1652 (1832)
..+. ... .+++|||++......... .+..|..+.+....... .....
T Consensus 168 ~~~~--------------------------~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~ 221 (442)
T COG1061 168 ELLS--------------------------AAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKY 221 (442)
T ss_pred Hhhh--------------------------cccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEE
Confidence 3332 112 799999976332111111 11112222222110000 00000
Q ss_pred --EEE------------------------------------EcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHH
Q psy6409 1653 --IVY------------------------------------ILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAK 1693 (1832)
Q Consensus 1653 --~~~------------------------------------~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~ 1693 (1832)
... ......+...+..++..+ ...+++|||.+..++..++.
T Consensus 222 ~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~ 301 (442)
T COG1061 222 VEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAK 301 (442)
T ss_pred EEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHH
Confidence 000 001112223333444434 36799999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhccccc
Q psy6409 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768 (1832)
Q Consensus 1694 ~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR 1768 (1832)
.|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|
T Consensus 302 ~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 302 LFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9988877 8899999999999999999999999999999999999999999999999999999999999999999
No 185
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=5.1e-25 Score=289.47 Aligned_cols=311 Identities=19% Similarity=0.221 Sum_probs=200.4
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
...|+|+|..+......+..+|+.||||+|||.++++.+...+. ......++|..||+++++|++.++.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~----------~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID----------QGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH----------hCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 45899999988655445667999999999999998887664321 12346899999999999999999886
Q ss_pred hcCCC--CCeEEEEEcCCchHHH-----------------------HHH-Hhc---CCceeecCHHHHHHHHH-cccccc
Q psy6409 828 FGTPL--GIRTVLVVGGLSREEQ-----------------------GFR-LRL---GCEIVIATPGRLIDVLE-NRYLVL 877 (1832)
Q Consensus 828 ~~~~~--~i~v~~~~Gg~~~~~~-----------------------~~~-l~~---~~~IlV~TP~rL~d~l~-~~~~~l 877 (1832)
+.... ...+...+|....... +.. ..+ -.+|+|||+..++..+. .+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 43221 3456677776542211 110 001 27999999987764443 222222
Q ss_pred CCc----eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH-H
Q psy6409 878 NQC----TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER-L 952 (1832)
Q Consensus 878 ~~~----~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~-~ 952 (1832)
..+ ++|||||+|-+ +.-....+..++..+. . ....+|++|||+|..... +
T Consensus 434 R~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~----------------------~--~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQA----------------------Q--AGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHH----------------------h--cCCcEEEEeCCCCHHHHHHH
Confidence 322 58999999943 3222223333333221 1 124699999999987754 3
Q ss_pred HHHhcCC---------CcEEEEccc--------CCCC-cceEEEEE--Ec--ch-hhHHHHHHHHHHc-CCCCCEEEEEc
Q psy6409 953 ARSYLRR---------PATVYIGSV--------GKPT-ERIEQIVY--IL--SE-QDKRKKLMEVLNR-GVKKPVIIFVN 1008 (1832)
Q Consensus 953 ~~~~l~~---------p~~v~~~~~--------~~~~-~~i~q~~~--~~--~~-~~k~~~L~~~l~~-~~~~~vIVFv~ 1008 (1832)
...|-.. |........ .... ......+. .. .. ......+..++.. ..++++|||||
T Consensus 489 ~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~N 568 (878)
T PRK09694 489 LDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICN 568 (878)
T ss_pred HHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEEC
Confidence 3333211 110000000 0000 00111111 11 11 1111222222222 24678999999
Q ss_pred ccchHHHHHHHHHHcC---CcEEEEcCCCCHHHH----HHHHHHH-hCCC---CcEEEecccccccCCCcCcCEEEEcCC
Q psy6409 1009 QKKGADVLAKGLEKLG---YNACTLHGGKGQEQR----ELALNSL-KGGS---KDILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1009 s~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R----~~il~~F-~~G~---~~VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
|++.|..+++.|...+ ..+..+||.++..+| +.+++.| ++|+ ..|||||+++++|||| +++++|...+
T Consensus 569 TV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 569 LVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred CHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC
Confidence 9999999999999765 679999999999999 4577888 7776 4799999999999999 5899999888
Q ss_pred CCCHhHHHHHhcccccCCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~ 1096 (1832)
| ++.|+||+||+||.+.
T Consensus 648 P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 648 P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred C--HHHHHHHHhccCCCCC
Confidence 8 6899999999999875
No 186
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=4.7e-25 Score=281.91 Aligned_cols=341 Identities=21% Similarity=0.304 Sum_probs=248.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|++.|.-+.-++..|+ |+.+.||+|||+++.+|++.... .|..+-|++||--||.|-+..+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------------~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------------TGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------------cCCCeEEEeccHHHHHhhHHHH
Confidence 464 79999998887777776 99999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCC--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~g-- 895 (1832)
..+...+|++|++++|+.+..+.... ..++|+++|..-+- |.|.... .....+.+.||||||.|+ |..
T Consensus 142 ~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 142 GELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 99999999999999998876655433 36899999987764 3443321 234567899999999754 211
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------------------CCCCCCch----
Q psy6409 896 -------------FEPDVQKILEYMPVT----------------------------------------NLKPDTED---- 918 (1832)
Q Consensus 896 -------------f~~~i~~Il~~l~~~----------------------------------------~~~~~~~~---- 918 (1832)
+...+..++..+... +.. +...
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~-~~~~~~~~ 298 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLY-DSENTALA 298 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCcccc-CchhhhHH
Confidence 111111222211100 000 0000
Q ss_pred h------------------------------------------HHHHHHHHhhc------------------cccccceE
Q psy6409 919 A------------------------------------------EDENKLLANYN------------------SKKKYRQT 938 (1832)
Q Consensus 919 ~------------------------------------------~~~~~ll~~~~------------------~~~~~~q~ 938 (1832)
. +.+...+..-+ -.+.+..+
T Consensus 299 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl 378 (796)
T PRK12906 299 HHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKL 378 (796)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchh
Confidence 0 00000110000 01224467
Q ss_pred EEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHH
Q psy6409 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADV 1015 (1832)
Q Consensus 939 v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~ 1015 (1832)
.++|.|.......|...|--+ +. .-+...+...... -..+.....|...+.+.+.. ..+.|+||||+|+..++.
T Consensus 379 ~GmTGTa~~e~~Ef~~iY~l~-vv--~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ 455 (796)
T PRK12906 379 SGMTGTAKTEEEEFREIYNME-VI--TIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSER 455 (796)
T ss_pred hccCCCCHHHHHHHHHHhCCC-EE--EcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 788999876666665555332 22 2222333322222 23445667788888887754 367899999999999999
Q ss_pred HHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCC---cCcC-----EEEEcCCCCCHhHHHHH
Q psy6409 1016 LAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDI---KDVS-----MVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1016 l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi---p~v~-----~VI~~d~p~s~~~yvQr 1087 (1832)
++..|...|+++..+||.+.+.++..+...++.|. |+|||++|+||+|| ++|. +||+++.|.|...|.|+
T Consensus 456 ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql 533 (796)
T PRK12906 456 LSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQL 533 (796)
T ss_pred HHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHH
Confidence 99999999999999999999888888888888887 99999999999999 4899 99999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCc
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||.|.+|.+.+|++.+|.
T Consensus 534 ~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 534 RGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999873
No 187
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=1.9e-24 Score=285.67 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHH-HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEecccccc
Q psy6409 986 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATDVAGR 1062 (1832)
Q Consensus 986 ~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L-~~~g~~v~~lhg~~~~~~R~~il~~F~~G--~~~VLVaTdv~~r 1062 (1832)
.|...|.+++......++||||+++..+..+++.| ...|+.+..+||+|++.+|..+++.|+++ .++|||||+++++
T Consensus 479 ~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 479 PRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 46677888888777889999999999999999999 46799999999999999999999999984 6999999999999
Q ss_pred cCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1063 GlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
|+|++.+++|||||+|.++..|.||+||+||.|+.|.+.+++...+......+.+++..
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987777766655555556555443
No 188
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=6e-25 Score=275.57 Aligned_cols=292 Identities=22% Similarity=0.226 Sum_probs=203.5
Q ss_pred CCCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
...|+++|.+|+..+.. ++..++++|||+|||.+++..+-.. +..+||||||++|+.|+.+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------------~~~~Lvlv~~~~L~~Qw~~ 98 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------------KRSTLVLVPTKELLDQWAE 98 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------------cCCEEEEECcHHHHHHHHH
Confidence 35799999999999998 8889999999999999988766421 2239999999999999987
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
.+.+..... ..++.+.|+.... . ...|.|+|.+.+........+....+.+||||||||+....|.. +
T Consensus 99 ~~~~~~~~~-~~~g~~~~~~~~~------~-~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~ 166 (442)
T COG1061 99 ALKKFLLLN-DEIGIYGGGEKEL------E-PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----I 166 (442)
T ss_pred HHHHhcCCc-cccceecCceecc------C-CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----H
Confidence 777664321 2234444443311 1 14699999998866421122334479999999999988644433 3
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccce-EEEEEecCChHHHH---HHHHhcCCCcEEEEcccC------CCCc
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ-TVMFTATMPPAVER---LARSYLRRPATVYIGSVG------KPTE 973 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q-~v~~SATl~~~v~~---~~~~~l~~p~~v~~~~~~------~~~~ 973 (1832)
...+. ... .+++|||++..-.. ....++ .|....+.... ..+.
T Consensus 167 ~~~~~--------------------------~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~ 219 (442)
T COG1061 167 LELLS--------------------------AAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPY 219 (442)
T ss_pred HHhhh--------------------------cccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccce
Confidence 32221 122 79999997532201 111111 12222221100 0000
Q ss_pred ceEEEEE------------------------------------EcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHH
Q psy6409 974 RIEQIVY------------------------------------ILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVL 1016 (1832)
Q Consensus 974 ~i~q~~~------------------------------------~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l 1016 (1832)
.+..... ......+...+..++..+ ...++||||.+..++..+
T Consensus 220 ~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i 299 (442)
T COG1061 220 KYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEI 299 (442)
T ss_pred EEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHH
Confidence 0000000 011122333444444433 467899999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1017 AKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1017 ~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
+..|...++ +..+.|..+..+|..+++.|+.|.+++||++.++.+|+|+|+++++|....+.|...|+||+||.-|.
T Consensus 300 ~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 300 AKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999988887 88999999999999999999999999999999999999999999999999999999999999999993
No 189
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.1e-25 Score=283.62 Aligned_cols=319 Identities=23% Similarity=0.311 Sum_probs=240.9
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
....+|| .|-++|++|+-.+..|..|+||||||||||.++-.++...+ ..+.+++|++|.++|.+|.
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al------------~~~qrviYTsPIKALsNQK 178 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL------------RDGQRVIYTSPIKALSNQK 178 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH------------HcCCceEeccchhhhhhhH
Confidence 3345677 68899999999999999999999999999999888776543 2355699999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHH
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 901 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~ 901 (1832)
+..|........-.++.++|+.+. ..++.++|+|.+.|-.++-++...+..+..|||||+|.|.|...+..++
T Consensus 179 yrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 179 YRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 988876533322235778888774 3468999999999988888888889999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc---CCCcEEEEcccCCCCcceEEE
Q psy6409 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 902 ~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l---~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
.++-.+| ...++++||||+|+..+ |+..+- ..|..+... ...+.+ +.++
T Consensus 252 E~Ii~lP-------------------------~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t-~~RpvP-L~~~ 303 (1041)
T COG4581 252 EVIILLP-------------------------DHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVST-EHRPVP-LEHF 303 (1041)
T ss_pred HHHHhcC-------------------------CCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEee-cCCCCC-eEEE
Confidence 9999887 23689999999998654 544432 234333332 222222 2222
Q ss_pred EEE-------cchhhH-----------------------------------------------HHHHHHHHHcCCCCCEE
Q psy6409 979 VYI-------LSEQDK-----------------------------------------------RKKLMEVLNRGVKKPVI 1004 (1832)
Q Consensus 979 ~~~-------~~~~~k-----------------------------------------------~~~L~~~l~~~~~~~vI 1004 (1832)
++. +.+..+ ...+...+.....-|+|
T Consensus 304 ~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I 383 (1041)
T COG4581 304 VYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAI 383 (1041)
T ss_pred EecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceE
Confidence 221 111110 01122222223345899
Q ss_pred EEEcccchHHHHHHHHHHc----------------------------CC-------------cEEEEcCCCCHHHHHHHH
Q psy6409 1005 IFVNQKKGADVLAKGLEKL----------------------------GY-------------NACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 1005 VFv~s~~~~~~l~~~L~~~----------------------------g~-------------~v~~lhg~~~~~~R~~il 1043 (1832)
+|+-++..|+..+..+... ++ ++++||+||-+..+..+.
T Consensus 384 ~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE 463 (1041)
T COG4581 384 VFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVE 463 (1041)
T ss_pred EEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHH
Confidence 9999999999988777311 12 356899999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEE----EcCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----NYDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI----~~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
..|..|-++||+||.+++.|+|.|.=++|+ .+|- .-+...|+|+.|||||.|-+ |.+|++-.+..
T Consensus 464 ~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~ 538 (1041)
T COG4581 464 ELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFE 538 (1041)
T ss_pred HHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCC
Confidence 999999999999999999999999888777 2332 34789999999999999876 88888766554
No 190
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.2e-24 Score=275.32 Aligned_cols=342 Identities=23% Similarity=0.275 Sum_probs=253.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-++..|+ |+.+.||+|||++|.+|++.... .|..|-|++||..||.|.+.++
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL------------~G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL------------TGKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH------------cCCCEEEEecCHHHHHHHHHHH
Confidence 566 78999988877776664 99999999999999999963322 2445779999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~g--- 1570 (1832)
..++..+|+++.+++|+.+...+.... .++|+++||++| .++|+.+. ..+..+.++||||||.|+=..
T Consensus 143 ~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArt 220 (830)
T PRK12904 143 GPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEART 220 (830)
T ss_pred HHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCC
Confidence 999999999999999999887765553 489999999999 89998765 346789999999999864211
Q ss_pred -------------ChHHHHHHHHhCCCCC----------------------------CCCCCchh----hhHHHHHhh--
Q psy6409 1571 -------------FEPDVQKILEYMPVTN----------------------------LKPDTEDA----EDENKLLAN-- 1603 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~~----------------------------~~~~~~~~----~~~~~l~~~-- 1603 (1832)
....+..+...+.... ...+.... .....+.+.
T Consensus 221 pLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l 300 (830)
T PRK12904 221 PLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHEL 300 (830)
T ss_pred ceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHH
Confidence 1122223333331100 00000000 000000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-..+..+.+||.|......
T Consensus 301 ~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~ 380 (830)
T PRK12904 301 FKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE 380 (830)
T ss_pred HhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH
Confidence 0 001123356789999987767
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+. ..-+...|...... -..+.....|..++...+.. ....|+||||+|+..++.++..|...|+++
T Consensus 381 E~~~iY~l~v---v~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 381 EFREIYNLDV---VVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHhCCCE---EEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 7766664332 22233444433332 23445677888888888855 567899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC--------------------------------------
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------- 1744 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------------------------- 1744 (1832)
..+||. +.+|+..+..|+.+...|+|||++++||+||+==
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999995 7899999999999999999999999999999732
Q ss_pred CEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1745 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1745 ~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
-+||-...|.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 3788888899999999999999999999999999998764
No 191
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=3.7e-24 Score=273.77 Aligned_cols=342 Identities=22% Similarity=0.297 Sum_probs=248.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-+.-++..|+ |..+.||+|||+++.+|++.... .|..|-+++|+--||.|-+.++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al------------~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNAL------------TGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHH------------cCCCeEEEeccHHHHHhhHHHH
Confidence 576 79999998877777776 99999999999999999986553 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcC-C--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDM-G-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~-g-- 1570 (1832)
..+...+|++|.+++|+.+....... ..+||+.+|...|- +.|+.+. .....+.+.||||+|.++=. .
T Consensus 142 ~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeart 219 (796)
T PRK12906 142 GELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEART 219 (796)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCC
Confidence 99999999999999998877655333 36899999987763 4454432 23457899999999975311 0
Q ss_pred -------------ChHHHHHHHHhCCCC---------------------------------------CCCCCCch----h
Q psy6409 1571 -------------FEPDVQKILEYMPVT---------------------------------------NLKPDTED----A 1594 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~---------------------------------------~~~~~~~~----~ 1594 (1832)
+...+..++..+... ........ .
T Consensus 220 PLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~ 299 (796)
T PRK12906 220 PLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAH 299 (796)
T ss_pred ceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHH
Confidence 111112222211100 00000000 0
Q ss_pred hhHHHHHhh---------------------------------------------h---------------ccccCcceEE
Q psy6409 1595 EDENKLLAN---------------------------------------------Y---------------NSKKKYRQTV 1614 (1832)
Q Consensus 1595 ~~~~~l~~~---------------------------------------------~---------------~~~~~~~q~v 1614 (1832)
.....+.+. + +.-+.+..+.
T Consensus 300 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~ 379 (796)
T PRK12906 300 HIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLS 379 (796)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhh
Confidence 000000000 0 0011234567
Q ss_pred EEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHH
Q psy6409 1615 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVL 1691 (1832)
Q Consensus 1615 ~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l 1691 (1832)
+||.|......++...|--+ .+ ..+...|...... -..+.....|..++.+.+.. ....|+||||+|+..++.+
T Consensus 380 GmTGTa~~e~~Ef~~iY~l~--vv-~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~l 456 (796)
T PRK12906 380 GMTGTAKTEEEEFREIYNME--VI-TIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERL 456 (796)
T ss_pred ccCCCCHHHHHHHHHHhCCC--EE-EcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 89999877666666655433 22 2233444332222 23445567788888888843 3778999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---CCC-----EEEEeCCCCCHHHHHHHh
Q psy6409 1692 AKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRI 1763 (1832)
Q Consensus 1692 ~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---~v~-----~VI~~d~P~s~~~yiQRi 1763 (1832)
+..|...|+++..+||.+.+.++..+...++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++
T Consensus 457 s~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~ 534 (796)
T PRK12906 457 SHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLR 534 (796)
T ss_pred HHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHh
Confidence 9999999999999999999888888888888887 999999999999994 899 999999999999999999
Q ss_pred cccccCCCccEEEEEeeCCCh
Q psy6409 1764 GRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1764 GRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||.|.+|.+.+|++.+|.
T Consensus 535 GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 535 GRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred hhhccCCCCcceEEEEeccch
Confidence 999999999999999998864
No 192
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=5.8e-24 Score=269.57 Aligned_cols=291 Identities=21% Similarity=0.283 Sum_probs=193.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
++.||||||||.+|+..+...+. .+..+|||+|+++|+.|+++.+++.+ +..++.++|+.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEK 65 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHH
Confidence 46899999999999766654432 36789999999999999999998753 5678888998876543
Q ss_pred ---HHHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC---hHHHHHHHHhCCCCCCCCCCchhhh
Q psy6409 1524 ---GFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF---EPDVQKILEYMPVTNLKPDTEDAED 1596 (1832)
Q Consensus 1524 ---~~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf---~~~l~~Il~~l~~~~~~~~~~~~~~ 1596 (1832)
+..+.. .++|||+|+..+. ..+.++++|||||+|...-++. ......+..
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~---------------- 122 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV---------------- 122 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH----------------
Confidence 333333 4799999998663 3578999999999997643221 101111110
Q ss_pred HHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc-c-CCCCcceEEEEEEcchh---hHHHHHHHHHH
Q psy6409 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS-V-GKPTERIEQIVYILSEQ---DKRKKLMEVLN 1671 (1832)
Q Consensus 1597 ~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~-~-~~~~~~i~q~~~~~~~~---~k~~~l~~~l~ 1671 (1832)
+.......+++++|||++......+.. .....+.... . +.....+ +.+...... .--..+.+.+.
T Consensus 123 -------~ra~~~~~~vil~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v-~vid~~~~~~~~~ls~~l~~~i~ 192 (505)
T TIGR00595 123 -------YRAKKFNCPVVLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEV-KLIDMRKEPRQSFLSPELITAIE 192 (505)
T ss_pred -------HHHHhcCCCEEEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeE-EEEecccccccCCccHHHHHHHH
Confidence 111123568999999976543322211 1111111110 0 1111111 111111110 00123344443
Q ss_pred hC--CCCcEEEEECchhH------------------------------------------------------------HH
Q psy6409 1672 RG--VKKPVIIFVNQKKG------------------------------------------------------------AD 1689 (1832)
Q Consensus 1672 ~~--~~~~vIVFv~s~~~------------------------------------------------------------a~ 1689 (1832)
.. .+.++|||+|++.. ++
T Consensus 193 ~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte 272 (505)
T TIGR00595 193 QTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTE 272 (505)
T ss_pred HHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHH
Confidence 32 45789999887643 47
Q ss_pred HHHHHHHHc--CCcEEEEcCCCCHHHH--HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEE--EeCC----CC-----
Q psy6409 1690 VLAKGLEKL--GYNACTLHGGKGQEQR--ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI--NYDM----AK----- 1754 (1832)
Q Consensus 1690 ~l~~~L~~~--~~~v~~lHg~ls~~~R--~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI--~~d~----P~----- 1754 (1832)
.+.+.|... +.++..+|++++...+ +.+++.|++|+++|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 273 ~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E 352 (505)
T TIGR00595 273 QVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAE 352 (505)
T ss_pred HHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHH
Confidence 778888776 7789999999987765 8999999999999999999999999999999886 4553 32
Q ss_pred -CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1755 -SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1755 -s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
....|+|++|||||.++.|.+++.....
T Consensus 353 ~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 2567999999999999999998655433
No 193
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=8.9e-24 Score=269.72 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=128.8
Q ss_pred cCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1407 EASLPTEILEIIE-----KIGYAEP---TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1407 e~~L~~~ll~~l~-----~~g~~~p---tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
.+.+.+.+...+. ..||..| +|+|.|+++.++.++++|+.|+||+|||++|++|++..+..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~----------- 134 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT----------- 134 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----------
Confidence 3467777777766 5799999 99999999999999999999999999999999999976532
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccccccC----
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRYLVLN---- 1553 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~~~l~---- 1553 (1832)
+..++||+||++||.|++.++..++..+|+++.+++||.+...+...+ +++|+||||++| .++++.+.+.++
T Consensus 135 -g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~ 211 (970)
T PRK12899 135 -GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQ 211 (970)
T ss_pred -cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHh
Confidence 223899999999999999999999999999999999999988876554 599999999999 999998766555
Q ss_pred ---CceeEEEccchhhhc
Q psy6409 1554 ---QCTYIVLDEADRMID 1568 (1832)
Q Consensus 1554 ---~v~llViDEaH~ll~ 1568 (1832)
.+.++||||||.|+-
T Consensus 212 vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 212 VGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hcccccEEEEechhhhhh
Confidence 458999999998763
No 194
>KOG0950|consensus
Probab=99.93 E-value=1.1e-24 Score=271.89 Aligned_cols=351 Identities=20% Similarity=0.261 Sum_probs=255.9
Q ss_pred CCHHHH-HHHHHcCCCCCcHHHHHHH--HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1410 LPTEIL-EIIEKIGYAEPTPIQRQAI--PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1410 L~~~ll-~~l~~~g~~~ptpiQ~~ai--~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
+++.+. -..+..|...++.+|.+++ |.++.++|+|..+||+.|||+++.+-|+..+.. ....++.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-----------~rr~~lli 275 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-----------RRRNVLLI 275 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-----------HhhceeEe
Confidence 444444 3445678999999999987 678899999999999999999999999876543 35569999
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--ccccCCceeEEEccch
Q psy6409 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--~~~l~~v~llViDEaH 1564 (1832)
.|....+++-...+..++..+|+.+-+.+|..++... .+.-++.|||.++-..++.+- .-.+..+++||+||.|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 9999999999999999999999999988887776532 335689999999887666542 2246678999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1565 ~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~ 1644 (1832)
.+.+.+.+..++.++..+-..+ .....|+|++|||+|+.- ++..|+.......-....
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~~--------------------~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~fRPv 409 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYEN--------------------LETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRFRPV 409 (1008)
T ss_pred eeeccccchHHHHHHHHHHHhc--------------------cccceeEeeeecccCChH--HHHHHhhhhheecccCcc
Confidence 9999999999999887653222 112278999999999852 334444321111100000
Q ss_pred CCCcce--EEEEEEcchh----------------hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHH-------
Q psy6409 1645 KPTERI--EQIVYILSEQ----------------DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK------- 1697 (1832)
Q Consensus 1645 ~~~~~i--~q~~~~~~~~----------------~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~------- 1697 (1832)
.-...+ -...+..+.. ...+.++.++... .+.++||||+++..|+.++..+..
T Consensus 410 ~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~ 489 (1008)
T KOG0950|consen 410 PLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIK 489 (1008)
T ss_pred cchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhh
Confidence 000000 0001111000 0112233333322 234699999999999998865532
Q ss_pred -------------------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE
Q psy6409 1698 -------------------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746 (1832)
Q Consensus 1698 -------------------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~ 1746 (1832)
..+++++||+|++.++|+.+...|++|-+.|++||+++++|++.|...+
T Consensus 490 ~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRV 569 (1008)
T KOG0950|consen 490 SEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRV 569 (1008)
T ss_pred hhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCccee
Confidence 1468999999999999999999999999999999999999999999888
Q ss_pred EEEeCC----CCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcC
Q psy6409 1747 VINYDM----AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISS 1797 (1832)
Q Consensus 1747 VI~~d~----P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1797 (1832)
+|-.-+ +.+..+|.||+|||||+| ..|.+++++...+...+.++.....+-
T Consensus 570 IiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 570 IIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKP 626 (1008)
T ss_pred EEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccc
Confidence 876432 347889999999999987 459999999999988777776654433
No 195
>KOG0948|consensus
Probab=99.92 E-value=4.3e-25 Score=265.82 Aligned_cols=307 Identities=21% Similarity=0.285 Sum_probs=237.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
++-|+|..||-.+-.+..|+|.|-|.+|||.++-.+|-..+. ..-+++|..|-++|-+|-++++..-.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr------------~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR------------EKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH------------hcCeEEeeChhhhhcchhHHHHHHHh
Confidence 578999999999999999999999999999998888876653 35689999999999999988887644
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
.. |+..+|+.+. ...+..+|+|.+.|-.+|-++.-.+..+..||+||+|.|-|..++-.++.-+-.+|
T Consensus 197 ~D----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP- 264 (1041)
T KOG0948|consen 197 KD----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP- 264 (1041)
T ss_pred cc----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc-
Confidence 43 5668888774 34578899999999999989888899999999999999999888877776555554
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHH---hcCCCcEEEEcccCCCCcceEEEEEE-----
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS---YLRRPATVYIGSVGKPTERIEQIVYI----- 981 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~---~l~~p~~v~~~~~~~~~~~i~q~~~~----- 981 (1832)
...+.+++|||+|+..+ |+.. .-..|..+...+... ..++|+++.
T Consensus 265 ------------------------~~vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdyRP--TPLQHyifP~ggdG 317 (1041)
T KOG0948|consen 265 ------------------------DNVRFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDYRP--TPLQHYIFPAGGDG 317 (1041)
T ss_pred ------------------------ccceEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecCCC--CcceeeeecCCCCe
Confidence 34789999999998665 5544 345566555443322 223443221
Q ss_pred ----cch-----hhHHHHHHHHH--------------------------------------HcCCCCCEEEEEcccchHH
Q psy6409 982 ----LSE-----QDKRKKLMEVL--------------------------------------NRGVKKPVIIFVNQKKGAD 1014 (1832)
Q Consensus 982 ----~~~-----~~k~~~L~~~l--------------------------------------~~~~~~~vIVFv~s~~~~~ 1014 (1832)
+.+ ++.+...+..| ......|+|||+-++++|+
T Consensus 318 lylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE 397 (1041)
T KOG0948|consen 318 LYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECE 397 (1041)
T ss_pred eEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHH
Confidence 111 12223333333 2223347999999999999
Q ss_pred HHHHHHHHcC---------------------------------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEE
Q psy6409 1015 VLAKGLEKLG---------------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILV 1055 (1832)
Q Consensus 1015 ~l~~~L~~~g---------------------------------------~~v~~lhg~~~~~~R~~il~~F~~G~~~VLV 1055 (1832)
.+|-.+.++. -++++||||+.+--.+.|.=.|.+|-++||+
T Consensus 398 ~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLF 477 (1041)
T KOG0948|consen 398 AYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLF 477 (1041)
T ss_pred HHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHH
Confidence 9998874431 2478999999999999999999999999999
Q ss_pred ecccccccCCCcCcCEEE----EcCCC----CCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1056 ATDVAGRGIDIKDVSMVI----NYDMA----KSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1056 aTdv~~rGlDip~v~~VI----~~d~p----~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
||.+++.|||.|+-++|+ -||-- .|--.|+|+.|||||-|.+ |.||+++...
T Consensus 478 ATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 478 ATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999999999988887 23322 1667899999999999876 8888887765
No 196
>KOG0950|consensus
Probab=99.92 E-value=1.8e-24 Score=270.12 Aligned_cols=339 Identities=21% Similarity=0.281 Sum_probs=251.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 734 SLPTEILEIIEKIGYAEPTPIQRQAI--PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 734 ~L~~~l~~~l~~~g~~~pt~iQ~~ai--~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
+++....-..+..|....+.+|.+++ |.++.++|+|..+||+.|||+++-+-++..+.. ....++.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-----------~rr~~lli 275 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-----------RRRNVLLI 275 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH-----------HhhceeEe
Confidence 33434444556689999999999997 678889999999999999999999999876542 35579999
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--ccccCCceeEEEecch
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEAD 889 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--~~~l~~~~~lViDEaH 889 (1832)
.|....++.-...+..++.++|+.+-+.+|....... ....+|.|||-++-..++++- .-.+..+.+||+||-|
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 9999999998889999999999999988877664332 335789999999886555432 1256788999999999
Q ss_pred hhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccC
Q psy6409 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969 (1832)
Q Consensus 890 ~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~ 969 (1832)
.+.|.+++..++.++..+-.. ......|+|++|||+|+. . +...+++.. ++....
T Consensus 352 mi~d~~rg~~lE~~l~k~~y~--------------------~~~~~~~iIGMSATi~N~-~-lL~~~L~A~--~y~t~f- 406 (1008)
T KOG0950|consen 352 MIGDKGRGAILELLLAKILYE--------------------NLETSVQIIGMSATIPNN-S-LLQDWLDAF--VYTTRF- 406 (1008)
T ss_pred eeeccccchHHHHHHHHHHHh--------------------ccccceeEeeeecccCCh-H-HHHHHhhhh--heeccc-
Confidence 999999999999998876321 111227899999999973 3 344455422 222211
Q ss_pred CCCcceE-----EEEEEcchhhHHHHHHHHH-------------------Hc--CCCCCEEEEEcccchHHHHHHHHHH-
Q psy6409 970 KPTERIE-----QIVYILSEQDKRKKLMEVL-------------------NR--GVKKPVIIFVNQKKGADVLAKGLEK- 1022 (1832)
Q Consensus 970 ~~~~~i~-----q~~~~~~~~~k~~~L~~~l-------------------~~--~~~~~vIVFv~s~~~~~~l~~~L~~- 1022 (1832)
.|....+ ..++.. .+...+.++- .. ..+.++||||++++.|+.++..+..
T Consensus 407 RPv~L~E~ik~G~~i~~~---~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~ 483 (1008)
T KOG0950|consen 407 RPVPLKEYIKPGSLIYES---SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKK 483 (1008)
T ss_pred CcccchhccCCCcccccc---hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHH
Confidence 1111111 111111 1222222221 11 1233599999999999998866521
Q ss_pred -------------------------------------cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 1023 -------------------------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 1023 -------------------------------------~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
..+++.+||+|++.++|+.+...|++|.+.||+||+++++|+|
T Consensus 484 vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVN 563 (1008)
T KOG0950|consen 484 VPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVN 563 (1008)
T ss_pred hhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCc
Confidence 1356899999999999999999999999999999999999999
Q ss_pred CcCcCEEEEcCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCCCchHHHHH
Q psy6409 1066 IKDVSMVINYDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1066 ip~v~~VI~~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d~~~~~~l 1115 (1832)
+|+..++|-.-+ ..+...|.||+|||||+|.+ |.+|+++.+.+...+..+
T Consensus 564 LPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 564 LPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred CCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 999999985433 34788999999999999876 999999999997665543
No 197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=7.7e-23 Score=264.44 Aligned_cols=319 Identities=22% Similarity=0.240 Sum_probs=247.9
Q ss_pred HHHHHH-HHcCCCCCcHHHHHHHHHHHc----C--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 738 EILEII-EKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 738 ~l~~~l-~~~g~~~pt~iQ~~ai~~il~----g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
.....+ ..++| .-||-|..||..+.. + -|=++||-.|-|||.+++-+++..+ ..|++|.|
T Consensus 582 ~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------------~~GKQVAv 648 (1139)
T COG1197 582 EWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------------MDGKQVAV 648 (1139)
T ss_pred HHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh------------cCCCeEEE
Confidence 333444 45777 579999999999985 3 4789999999999999999998654 35899999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh---cC-CceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---LG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~---~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
||||.-||+|.++.|++....+++++..+..-.+..++...+. .| .+||||| .-|..+.+.+.++.+||||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEe
Confidence 9999999999999999999999999999998888777655443 33 8999999 4455667789999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|-|+.. ......+..+ +.+.-++-+|||.=|..-.++...+++-..+...
T Consensus 724 EEqRFG-Vk~KEkLK~L-----------------------------r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP 773 (1139)
T COG1197 724 EEQRFG-VKHKEKLKEL-----------------------------RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP 773 (1139)
T ss_pred chhhcC-ccHHHHHHHH-----------------------------hccCcEEEeeCCCCcchHHHHHhcchhhhhccCC
Confidence 999743 1122222222 1346789999998666666777766665444332
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
+... ..+..++...+..--...++.-+. .++++..-+|..+..+.+++.|+.+ ...+++.||.|+..+-+.++.
T Consensus 774 P~~R--~pV~T~V~~~d~~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 774 PEDR--LPVKTFVSEYDDLLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred CCCC--cceEEEEecCChHHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 2221 223333333333322333333332 4678888899999999999999987 578999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.|-+|+++|||||.+.+.|||||+++.+|..+.-. ..++..|..||+||....|.|+.++.+..
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 99999999999999999999999999999766644 88999999999999999999999998764
No 198
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.1e-22 Score=263.14 Aligned_cols=316 Identities=21% Similarity=0.225 Sum_probs=248.9
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhc----C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPIGLQ----N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~il~----g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
+.-..++| .-||-|..||..+.. + .|=++|+-.|-|||-+++-+++..+ .+|+.|.|||||
T Consensus 586 ~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------------~~GKQVAvLVPT 652 (1139)
T COG1197 586 EFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------------MDGKQVAVLVPT 652 (1139)
T ss_pred HHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh------------cCCCeEEEEccc
Confidence 34445777 789999999999884 3 4789999999999999999998655 358999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh---hc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchh
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL---RL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l---~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ 1565 (1832)
.-||+|.++.|++-+..+++++..+.-=.+..++...+ .. ..||||+|- .|.+..+.+.++++|||||=|+
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhh
Confidence 99999999999999999999998887766666554433 33 489999994 3446677899999999999998
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCC
Q psy6409 1566 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645 (1832)
Q Consensus 1566 ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~ 1645 (1832)
..- .....+..+ +...-++-+|||+-|....+....+++-..+...+.++
T Consensus 728 FGV-k~KEkLK~L-----------------------------r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 728 FGV-KHKEKLKEL-----------------------------RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred cCc-cHHHHHHHH-----------------------------hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC
Confidence 631 122222222 23456899999998888888888888766665544433
Q ss_pred CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.. |..++...+..--..++..-+ ..++++...+|.++..+.++..|+.+ ...+++.||.|+..+-+.++..|-+
T Consensus 778 ~p--V~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 778 LP--VKTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred cc--eEEEEecCChHHHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 22 333444333333333333322 25688999999999999999999987 5678999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
|+++|||||++.+.|||||+++.+|..+.-. -.++..|..||+||.+..|.|+.++.+.+
T Consensus 854 g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 854 GEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 9999999999999999999999998765433 58899999999999999999999998764
No 199
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.91 E-value=7.4e-23 Score=276.77 Aligned_cols=304 Identities=18% Similarity=0.222 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.++++|.+|+..+. .| +.+++++|||||||++++..+...+.. ....++|||||+.+|+.|+...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~----------~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA----------KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc----------CccCeEEEEecHHHHHHHHHHH
Confidence 69999999998876 23 679999999999999855444333221 2356899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----ccccCCceeEEEccchhhhcC-----
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDM----- 1569 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----~~~l~~v~llViDEaH~ll~~----- 1569 (1832)
|..+....+.....+++....... .......|+|+|.+++...+... ...+.++++||+||||+-...
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 998743322122112221111111 11235789999999998765321 245788999999999985311
Q ss_pred ----C------ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH-------------
Q psy6409 1570 ----G------FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER------------- 1626 (1832)
Q Consensus 1570 ----g------f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~------------- 1626 (1832)
+ +...+..|+.++. ...++||||+......
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yFd---------------------------A~~IGLTATP~r~t~~~FG~pv~~Ysl~e 613 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYFD---------------------------AVKIGLTATPALHTTEIFGEPVYTYSYRE 613 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhcC---------------------------ccEEEEecCCccchhHHhCCeeEEeeHHH
Confidence 1 1244555555432 2479999998632211
Q ss_pred -HHHHhcCC---CcEEEEcc--cCCC---Cc---ceEE---EE--EEcchh--------h-------HHHH----HHHHH
Q psy6409 1627 -LARSYLRR---PATVYIGS--VGKP---TE---RIEQ---IV--YILSEQ--------D-------KRKK----LMEVL 1670 (1832)
Q Consensus 1627 -~~~~~l~~---p~~v~i~~--~~~~---~~---~i~q---~~--~~~~~~--------~-------k~~~----l~~~l 1670 (1832)
+...|+.+ |..+.... .+.. .. .+.. .+ ....+. . .... +...+
T Consensus 614 AI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l 693 (1123)
T PRK11448 614 AVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL 693 (1123)
T ss_pred HHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122221 22211100 0000 00 0000 00 000000 0 0011 22222
Q ss_pred HhCCCCcEEEEECchhHHHHHHHHHHHc------CC---cEEEEcCCCCHHHHHHHHHHhhCCCC-cEEEEcccccccCC
Q psy6409 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKL------GY---NACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGID 1740 (1832)
Q Consensus 1671 ~~~~~~~vIVFv~s~~~a~~l~~~L~~~------~~---~v~~lHg~ls~~~R~~il~~F~~g~~-~VLVATdvl~~GID 1740 (1832)
.....+++||||.++.+|+.++..|... ++ .+..+||+.+ ++..+++.|+++.. +|||+++++.+|+|
T Consensus 694 ~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~D 771 (1123)
T PRK11448 694 DPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGID 771 (1123)
T ss_pred hccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCC
Confidence 2233478999999999999999887653 22 4566888875 46789999999987 69999999999999
Q ss_pred CCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1741 IKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1741 ip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
+|.|.+||.++.+.|...|+||+||+.|.
T Consensus 772 vP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 772 VPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred cccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 99999999999999999999999999995
No 200
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=4.7e-24 Score=234.77 Aligned_cols=147 Identities=35% Similarity=0.521 Sum_probs=132.2
Q ss_pred ChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCC
Q psy6409 11 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 90 (1832)
Q Consensus 11 ~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~ 90 (1832)
||.|.++|+.+++|+|++++||||||||++|++|++..+... ....+||++||++|+.|+.+.+++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 899999999999999999999999999999999999877542 2348999999999999999999999998
Q ss_pred ccceEEEEeCCcchH-HHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCC
Q psy6409 91 LGIRTVLVVGGLSRE-EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167 (1832)
Q Consensus 91 ~~~~~~~~~gg~~~~-~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~ 167 (1832)
.+++...++||.+.. .+...+..+++|||+||++|.+++..+.+.+..+++||+||+|.+.+++|...+..|++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLK 148 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhc
Confidence 889999999999966 56666677899999999999999998766778899999999999999999999999988763
No 201
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=1.4e-22 Score=274.02 Aligned_cols=303 Identities=18% Similarity=0.215 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHHHHHc-----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ-----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~-----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..|+++|.+||..+.. .+.++++++||||||.+++..+. .+.. .....++|||+|+++|+.|+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~---------~~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLK---------AKRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHh---------cCccCeEEEEecHHHHHHHHHH
Confidence 3589999999988762 36799999999999988554333 3321 1235689999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----ccccCCceeEEEecchhhhc-----
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMID----- 893 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----~~~l~~~~~lViDEaH~l~d----- 893 (1832)
.|..+....+.....+++.....+. .......|+|+|.++|...+... ...+.++++||+||||+-..
T Consensus 482 ~F~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 482 AFKDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHHhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 9998743322222222221111111 11235899999999997765321 13568899999999998531
Q ss_pred ----CCC------hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE-
Q psy6409 894 ----MGF------EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT- 962 (1832)
Q Consensus 894 ----~gf------~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~- 962 (1832)
.+| ...+..++.++. ...|+||||..... ..++..|+.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd---------------------------A~~IGLTATP~r~t----~~~FG~pv~~ 608 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD---------------------------AVKIGLTATPALHT----TEIFGEPVYT 608 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC---------------------------ccEEEEecCCccch----hHHhCCeeEE
Confidence 011 234444544331 34799999974221 122223321
Q ss_pred --------------------EEEc--ccC---CCC---cceEE---EE--EEcch---------------hhHH----HH
Q psy6409 963 --------------------VYIG--SVG---KPT---ERIEQ---IV--YILSE---------------QDKR----KK 990 (1832)
Q Consensus 963 --------------------v~~~--~~~---~~~---~~i~q---~~--~~~~~---------------~~k~----~~ 990 (1832)
+... ..+ ... ..+.. .+ ....+ .... ..
T Consensus 609 Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~ 688 (1123)
T PRK11448 609 YSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEE 688 (1123)
T ss_pred eeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence 1110 000 000 00000 00 00000 0001 11
Q ss_pred HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc------CC---cEEEEcCCCCHHHHHHHHHHHhCCCC-cEEEecccc
Q psy6409 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------GY---NACTLHGGKGQEQRELALNSLKGGSK-DILVATDVA 1060 (1832)
Q Consensus 991 L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------g~---~v~~lhg~~~~~~R~~il~~F~~G~~-~VLVaTdv~ 1060 (1832)
+.+.+....++++||||.++.+|+.+++.|... ++ .+..+||+.+ ++..+++.|++|.. +|||+++++
T Consensus 689 l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 689 LAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred HHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 222232234578999999999999999888653 22 4567899875 46789999999987 699999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
.+|+|+|.|.+||.++++.|...|+|++||+.|.-.
T Consensus 767 ~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 767 TTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999999643
No 202
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=259.10 Aligned_cols=342 Identities=20% Similarity=0.268 Sum_probs=236.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++.+|+ |+.++||.|||++|.+|++...+ .|..|.||+|+..||.|..+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al------------~g~~VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVITVNDYLARRDAENN 143 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 454 67888876666666664 99999999999999999986542 3555999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc-c-----ccCCceeEEEecchhhhcCC-Ch
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-L-----VLNQCTYIVLDEADRMIDMG-FE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~-~-----~l~~~~~lViDEaH~l~d~g-f~ 897 (1832)
..+...+|++|.+++|+.+..+. .-.-.++|+||||+.| .|+|..+. + ....+.++||||||.|+-+. .-
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 99999999999999999886433 2223699999999999 88887652 2 23678999999999876322 11
Q ss_pred ---------------HHHHHHHHhCCCC------------C--CCC------CCc-hhHHHHHHH---------------
Q psy6409 898 ---------------PDVQKILEYMPVT------------N--LKP------DTE-DAEDENKLL--------------- 926 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~~------------~--~~~------~~~-~~~~~~~ll--------------- 926 (1832)
..+..++..+... . ... -++ .......++
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 1111122221100 0 000 000 000011111
Q ss_pred -------------Hhh---ccc----------------------------------------------------------
Q psy6409 927 -------------ANY---NSK---------------------------------------------------------- 932 (1832)
Q Consensus 927 -------------~~~---~~~---------------------------------------------------------- 932 (1832)
... ...
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence 000 000
Q ss_pred cccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcc
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1009 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s 1009 (1832)
+.+..+.++|.|.......|...|--+ +..-+...+......- ..+.....|...+.+-+.. ..+.|+||||+|
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~---Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLD---TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCC---EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 011123345555444334444433221 2222223333222221 2334556777766665543 357799999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc----------------------
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1067 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------------- 1067 (1832)
...++.++..|...|+++..+||.+++.++..+.+.|+.|. |+|||++|+||+||.
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999985
Q ss_pred ---------------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1068 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1068 ---------------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+==+||-...+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 123788888888888889999999999999999999998873
No 203
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.9e-22 Score=253.26 Aligned_cols=342 Identities=20% Similarity=0.271 Sum_probs=239.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--.+..| -|+.++||+|||++|.+|++.... .|..|.||+|+..||.|..+++
T Consensus 79 lgm-~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al------------~g~~VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVITVNDYLARRDAENN 143 (908)
T ss_pred hCC-CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHh------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 565 7888887665555444 599999999999999999986543 2555999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc-cc-----cCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY-LV-----LNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~-~~-----l~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|++|.++.++.+..... -.-+++|+++||+.| .++|+.+. +. ...+.++||||||.|+-..
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArt 221 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEART 221 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCC
Confidence 999999999999999998864332 123689999999999 88888762 22 3778999999999865321
Q ss_pred -------------ChHHHHHHHHhCCCC------------CCCCC--------Cc-hhhhHHHHH---------------
Q psy6409 1571 -------------FEPDVQKILEYMPVT------------NLKPD--------TE-DAEDENKLL--------------- 1601 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~------------~~~~~--------~~-~~~~~~~l~--------------- 1601 (1832)
+...+..++..+... .+..+ +. ........+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~ 301 (908)
T PRK13107 222 PLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSA 301 (908)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCc
Confidence 111111122111100 00000 00 000000000
Q ss_pred --------------hh--hccc----------------------------------------------------------
Q psy6409 1602 --------------AN--YNSK---------------------------------------------------------- 1607 (1832)
Q Consensus 1602 --------------~~--~~~~---------------------------------------------------------- 1607 (1832)
+. +...
T Consensus 302 ~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (908)
T PRK13107 302 ANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYF 381 (908)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHH
Confidence 00 0000
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECc
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1684 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s 1684 (1832)
+.+..+.+||.|......++..-|--+ +...+...|....... ..+.....|..++++-+.. ..+.|+||||+|
T Consensus 382 r~Y~kL~GMTGTa~te~~Ef~~iY~l~---Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 382 RQYEKLAGMTGTADTEAFEFQHIYGLD---TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HhhhHhhcccCCChHHHHHHHHHhCCC---EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 001123356666555544555544322 2222334443333222 2344556777777766653 367899999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC----------------------
Q psy6409 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1742 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------------- 1742 (1832)
+..++.++..|...++++..+|+.+++.++..+.+.|+.|. |+|||++++||+||.
T Consensus 459 v~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~ 536 (908)
T PRK13107 459 IEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAK 536 (908)
T ss_pred HHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999986
Q ss_pred ---------------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 ---------------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.=-+||-...+.|..-=-|-.|||||-|.+|.+..|++=+|.
T Consensus 537 ~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 537 IKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 123788888898888889999999999999999999998764
No 204
>KOG0925|consensus
Probab=99.89 E-value=1.1e-22 Score=235.25 Aligned_cols=332 Identities=18% Similarity=0.206 Sum_probs=239.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+..|...+.++...+.+++..-......+.+-+..+.+++-++++|.||||||. .+|-...-...+ ...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~---------~~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS---------HLT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh---------hcc
Confidence 667888888888888888765444444455555666678889999999999998 455442211111 125
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
.+.+..|.|..|++++.+.. ..+.+..+.-+|.....+. .....+-+-++|.|+|++...... .+..+++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEd--C~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFED--CTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHH---HHhccccchhccccccccc--cCChhHHHHHhcchHHHHHHhhCc-ccccccEEEec
Confidence 68999999999999766544 3456666666666554443 111233455788888887666555 68999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
||| .++..++.+.++++.+...++...+|.+|||+. ..+|-.+|.+.|.....+
T Consensus 167 eah------------------------ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~--a~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 167 EAH------------------------ERTLATDILMGLLKEVVRNRPDLKLVVMSATLD--AEKFQRYFGNAPLLAVPG 220 (699)
T ss_pred hhh------------------------hhhHHHHHHHHHHHHHHhhCCCceEEEeecccc--hHHHHHHhCCCCeeecCC
Confidence 999 445677888999999998889999999999983 566666666666554443
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc---------CCcEEEEcCCCCHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------GYNACTLHGGKGQE 1037 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~ 1037 (1832)
......-+.+...-..-+.....+++++....++.++||....++++..++.+... .+.|.++| +.
T Consensus 221 -~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~ 295 (699)
T KOG0925|consen 221 -THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PA 295 (699)
T ss_pred -CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----ch
Confidence 22211111111112233456677778887778899999999999998888887632 25678888 55
Q ss_pred HHHHHHHHHhC---C--CCcEEEecccccccCCCcCcCEEEEcCC------------------CCCHhHHHHHhcccccC
Q psy6409 1038 QRELALNSLKG---G--SKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1038 ~R~~il~~F~~---G--~~~VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~~~yvQr~GRaGR~ 1094 (1832)
++..+++.... | ..+|+|+|++++..+.|++|.+||+.++ |.|..+..||.|||||.
T Consensus 296 ~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt 375 (699)
T KOG0925|consen 296 QQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 375 (699)
T ss_pred hhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC
Confidence 66666666542 2 3579999999999999999999997776 67899999999999997
Q ss_pred CCCcEEEEEecCC
Q psy6409 1095 GKEGLAVSFCTKD 1107 (1832)
Q Consensus 1095 g~~G~ai~~~~~~ 1107 (1832)
. +|+|+.+|+++
T Consensus 376 ~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 376 R-PGKCFRLYTEE 387 (699)
T ss_pred C-CCceEEeecHH
Confidence 5 69999999976
No 205
>KOG0926|consensus
Probab=99.89 E-value=1.5e-22 Score=245.06 Aligned_cols=322 Identities=19% Similarity=0.212 Sum_probs=216.7
Q ss_pred HHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCe
Q psy6409 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835 (1832)
Q Consensus 756 ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~ 835 (1832)
++...+|..+--+||||.||||||+ .+|.+.|=.- .. . .....+..+-|..|+|..|..++++...-+..+|-.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAG--f~-s-~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~e 335 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAG--FA-S-EQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSE 335 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcc--cC-C-ccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccc
Confidence 3445556666679999999999999 6777654211 10 0 111235589999999999988887766433336666
Q ss_pred EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCC
Q psy6409 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915 (1832)
Q Consensus 836 v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~ 915 (1832)
|.+.+.... .....+.|.++|.|.|+..+.+.. .|..++.|||||||.-.- .-+.+-.++.++-.
T Consensus 336 VsYqIRfd~------ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~------ 400 (1172)
T KOG0926|consen 336 VSYQIRFDG------TIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVP------ 400 (1172)
T ss_pred eeEEEEecc------ccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHH------
Confidence 665443222 122368899999999999998765 689999999999995320 11222222222200
Q ss_pred CchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH--Hhc-CCCcEEEEcccCCCCc-ceEEEEEEcchhhHHHHH
Q psy6409 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR--SYL-RRPATVYIGSVGKPTE-RIEQIVYILSEQDKRKKL 991 (1832)
Q Consensus 916 ~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~--~~l-~~p~~v~~~~~~~~~~-~i~q~~~~~~~~~k~~~L 991 (1832)
+..-...-...-+...+|++|||+- +.+|.. .++ .-|..+.+.....+.. .........+-...+...
T Consensus 401 ------LR~k~~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKt 472 (1172)
T KOG0926|consen 401 ------LRQKYYKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKT 472 (1172)
T ss_pred ------HHHHHhhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHH
Confidence 0000011112234678999999983 555542 122 2233333332222111 011111112334566777
Q ss_pred HHHHHcCCCCCEEEEEcccchHHHHHHHHHHc------------------------------------------------
Q psy6409 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------------------------------------------ 1023 (1832)
Q Consensus 992 ~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------------------------------------------ 1023 (1832)
..+++..+++.+|||+..+.+++.|++.|++.
T Consensus 473 c~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~ 552 (1172)
T KOG0926|consen 473 CKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDI 552 (1172)
T ss_pred HHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhh
Confidence 78888889999999999999999999998331
Q ss_pred ---------------------------------------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 1024 ---------------------------------------------------GYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 1024 ---------------------------------------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+-|.++++-++.+.+..+|+.-..|..=
T Consensus 553 d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RL 632 (1172)
T KOG0926|consen 553 DQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERL 632 (1172)
T ss_pred hhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceE
Confidence 01267888999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCC------------------CHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAK------------------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
++|||+||+..|.||+|.+||+.+.-+ |.++.-||+|||||.|. |+|+.+|+..
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp-GHcYRLYSSA 704 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP-GHCYRLYSSA 704 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC-CceeehhhhH
Confidence 999999999999999999999765522 56677899999999995 9999999864
No 206
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=5.7e-22 Score=218.20 Aligned_cols=167 Identities=35% Similarity=0.529 Sum_probs=142.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
||+|.++++.+.+|+|++++||||+|||++|++|++..+.. ....+++|++|+++|+.|+...+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~----------~~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE----------GKDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT----------TSSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc----------CCCceEEEEeecccccccccccccccccc
Confidence 79999999999999999999999999999999999987643 12348999999999999999999999888
Q ss_pred CCCeEEEEEcCCchH-HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCC
Q psy6409 832 LGIRTVLVVGGLSRE-EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910 (1832)
Q Consensus 832 ~~i~v~~~~Gg~~~~-~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~ 910 (1832)
.++++..++|+.... .....+..+++|+|+||++|.+.+......+.++++|||||+|++.++++...+..|+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~- 149 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR- 149 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-
T ss_pred cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC-
Confidence 889999999999865 344445557999999999999999886557777999999999999998889988888887631
Q ss_pred CCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 911 ~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
....+++++|||+++.+++
T Consensus 150 ----------------------~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 150 ----------------------FKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp ----------------------TTTSEEEEEESSSTHHHHH
T ss_pred ----------------------CCCCcEEEEeeCCChhHhh
Confidence 1147899999999976664
No 207
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=9.7e-21 Score=212.14 Aligned_cols=304 Identities=20% Similarity=0.229 Sum_probs=207.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+++|.|..+-..++ +..++|+.|-||+|||-.. ++.+....+ .|.++.+..|....+.+++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh-----------cCCeEEEecCcccchHHHHHHH
Confidence 78999988777665 5689999999999999863 344443332 5889999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
+.-+. +..+.+++|+.....+ .+++|+|...|+..- +.++++||||+|..- ..--+.+..-+.
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP-~~~d~~L~~Av~ 227 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFP-FSDDQSLQYAVK 227 (441)
T ss_pred HHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEecccccc-ccCCHHHHHHHH
Confidence 98654 4667889998775432 679999998876643 358999999999431 111122222221
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
. ......-++.+|||.++.++.-+...-..+ +.+...-.....+...+.++..-
T Consensus 228 ~------------------------ark~~g~~IylTATp~k~l~r~~~~g~~~~--~klp~RfH~~pLpvPkf~w~~~~ 281 (441)
T COG4098 228 K------------------------ARKKEGATIYLTATPTKKLERKILKGNLRI--LKLPARFHGKPLPVPKFVWIGNW 281 (441)
T ss_pred H------------------------hhcccCceEEEecCChHHHHHHhhhCCeeE--eecchhhcCCCCCCCceEEeccH
Confidence 1 122345689999999988765443321111 11111111111111223333222
Q ss_pred hH------H-HHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHH-cC-CcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1661 DK------R-KKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK-LG-YNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1661 ~k------~-~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~-~~-~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
.| + ..|..+++.+ .+.|++||++++...+.++..|+. .+ ..++..|+. ...|.+..+.|++|++.||
T Consensus 282 ~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 282 NKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred HHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEE
Confidence 22 1 2677777655 568999999999999999999943 33 345677875 3568999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCC--CCHHHHHHHhcccccCC-C-ccEEEEEeeCCChh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMA--KSIEDYTHRIGRTGRAG-K-EGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P--~s~~~yiQRiGRaGR~g-~-~G~ai~~~~~~d~~ 1785 (1832)
|+|++++|||.+|+|+++|.-.-- .+-+.++|.+||+||.- . .|..+.|-..-.+.
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999999999999987753322 46889999999999953 2 46665554443433
No 208
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=6.2e-20 Score=205.77 Aligned_cols=310 Identities=19% Similarity=0.226 Sum_probs=208.8
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+++|.|+.+-..++ +..++||.|-||+|||.. +.+.+.... ..|.++.+..|+...+.+++.+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al-----------~~G~~vciASPRvDVclEl~~R 163 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQAL-----------NQGGRVCIASPRVDVCLELYPR 163 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHH-----------hcCCeEEEecCcccchHHHHHH
Confidence 368999987766555 468999999999999985 333333332 3588999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
++.... ++.+.+++|+..... ..+++|+|.-.|+.. -+.++++||||+|-..
T Consensus 164 lk~aF~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP------------ 215 (441)
T COG4098 164 LKQAFS--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFP------------ 215 (441)
T ss_pred HHHhhc--cCCeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEEecccccc------------
Confidence 988643 567888999877432 278899998777553 3467899999999421
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 984 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~ 984 (1832)
.. . ......+........--+|.+|||.|..+++-+..- +-..+.+.......+...-.+.++..
T Consensus 216 ----~~------~---d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~ 280 (441)
T COG4098 216 ----FS------D---DQSLQYAVKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGN 280 (441)
T ss_pred ----cc------C---CHHHHHHHHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEecc
Confidence 00 0 000011111223345568999999987776543321 11122222222222222222333332
Q ss_pred hhH-H------HHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHH-cC-CcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 985 QDK-R------KKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEK-LG-YNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 985 ~~k-~------~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~-~g-~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
-.| + ..|..+++.+ .+.|++||+++....+.++..|+. .+ ..+..+|+. ...|.+..+.|++|++++
T Consensus 281 ~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 281 WNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITL 358 (441)
T ss_pred HHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEE
Confidence 222 2 2566666654 557999999999999999999944 33 345788875 457899999999999999
Q ss_pred EEecccccccCCCcCcCEEEEc-CC-CCCHhHHHHHhcccccCC--CCcEEEEEecCCCchHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINY-DM-AKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~-d~-p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~~~~~~l 1115 (1832)
||+|.+++||+.+|+|++++.- .- -.+-+..+|..||+||.- ..|..+.|-......+....
T Consensus 359 LiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~ 424 (441)
T COG4098 359 LITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQAR 424 (441)
T ss_pred EEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHH
Confidence 9999999999999999976632 21 137889999999999953 44776666555554444443
No 209
>KOG0920|consensus
Probab=99.86 E-value=9.3e-21 Score=243.43 Aligned_cols=316 Identities=20% Similarity=0.245 Sum_probs=229.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-Hh
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KF 828 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~ 828 (1832)
.-...+.+.+.++.+++.++|+|.||+|||+..--.||..... .+....++|..|+|--|..+++++. +.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---------~~~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---------SGAACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---------cCCCCeEEecCCchHHHHHHHHHHHHHh
Confidence 3355677788888889999999999999999655445543321 1245679999999999988888765 45
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
+...|-.|+.-++..+... ..+.+++||.|.|++.|... ..+..+..||+||+|.-
T Consensus 244 ~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER----------------- 299 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHER----------------- 299 (924)
T ss_pred ccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEc-----------------
Confidence 6677766776666555322 25889999999999999874 47899999999999943
Q ss_pred CCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCc---------------
Q psy6409 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE--------------- 973 (1832)
Q Consensus 909 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~--------------- 973 (1832)
....+.+.-+++......+..++|++|||+. .+.|..+|...|.....+.......
T Consensus 300 -------~i~~DflLi~lk~lL~~~p~LkvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~ 370 (924)
T KOG0920|consen 300 -------SINTDFLLILLKDLLPRNPDLKVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSE 370 (924)
T ss_pred -------cCCcccHHHHHHHHhhhCCCceEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhccccc
Confidence 2233333334444445557799999999996 6777777777776665554332110
Q ss_pred ceEEE------------EEEcchhhH---HHHHHHHH-HcCCCCCEEEEEcccchHHHHHHHHHHc-------CCcEEEE
Q psy6409 974 RIEQI------------VYILSEQDK---RKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYNACTL 1030 (1832)
Q Consensus 974 ~i~q~------------~~~~~~~~k---~~~L~~~l-~~~~~~~vIVFv~s~~~~~~l~~~L~~~-------g~~v~~l 1030 (1832)
...+. ......+-. +..|+..+ .....+.+|||.++..++..+.+.|... .+-+.++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilpl 450 (924)
T KOG0920|consen 371 DDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPL 450 (924)
T ss_pred ccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEec
Confidence 00001 000001111 22222222 2335678999999999999999999653 2567889
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CC----------CHhHHHHHhcccc
Q psy6409 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AK----------SIEDYTHRIGRTG 1092 (1832)
Q Consensus 1031 hg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~----------s~~~yvQr~GRaG 1092 (1832)
|+.|+..++..++.....|..+|++||++|+.+|.||+|.+||+.+. -. |.+...||.||||
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 99999999999999999999999999999999999999999996443 22 5677899999999
Q ss_pred cCCCCcEEEEEecCCC
Q psy6409 1093 RAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1093 R~g~~G~ai~~~~~~d 1108 (1832)
|.- .|.|+.+++...
T Consensus 531 Rv~-~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 531 RVR-PGICYHLYTRSR 545 (924)
T ss_pred Ccc-CCeeEEeechhh
Confidence 985 599999999874
No 210
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.7e-19 Score=231.35 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=115.1
Q ss_pred EcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 981 ILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 981 ~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
+.....|...+.+.+... .+.|+||||+|+..++.|+..|...|+++..+|+ .+.+|+..+..|+.+...|+||||
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 445667888888888543 6789999999999999999999999999999997 688999999999999999999999
Q ss_pred cccccCCCc---CcC-----EEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1059 VAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1059 v~~rGlDip---~v~-----~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|+||+||+ +|. +||++..|.|...|.|++|||||.|.+|.+++|++.+|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 554 459999999999999999999999999999999999873
No 211
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=6.6e-19 Score=228.37 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1660 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..+...|+..+... .+.++||||+++..|+.|+..|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34555666666543 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEeC-----CCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHH
Q psy6409 1738 GIDIKDVSMVINYD-----MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1738 GIDip~v~~VI~~d-----~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1792 (1832)
|+|+|++++||++| +|.+..+|+||+|||||. ..|.+++|++..+..+...+.+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 899999999999999997 6899999999876554444433
No 212
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.83 E-value=2.8e-18 Score=222.54 Aligned_cols=133 Identities=23% Similarity=0.345 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~r 1062 (1832)
..++..|+..+.. ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 3345555555543 35678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCcCEEEEcC-----CCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1063 GIDIKDVSMVINYD-----MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1063 GlDip~v~~VI~~d-----~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|+|+|++++||++| +|.+..+|+||+|||||. ..|.+++|++..+..+...+.+.
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999988 799999999999999998 57999999998887766666553
No 213
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.2e-19 Score=227.70 Aligned_cols=127 Identities=23% Similarity=0.335 Sum_probs=115.0
Q ss_pred EcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1656 ILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1656 ~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
+.....|..++.+.+... .+.|+||||+|+..++.|+..|...|+++.++|+ .+.+|+..+..|+.+...|+|||+
T Consensus 577 y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATN 654 (1025)
T PRK12900 577 YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATN 654 (1025)
T ss_pred ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEecc
Confidence 455667888888888543 6789999999999999999999999999999997 688999999999999999999999
Q ss_pred cccccCCCC---CCC-----EEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIK---DVS-----MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip---~v~-----~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+++||+||+ +|. +||++..|.|...|.|++|||||.|.+|.+++|++..|.
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999999 553 459999999999999999999999999999999999874
No 214
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.4e-18 Score=218.36 Aligned_cols=303 Identities=26% Similarity=0.358 Sum_probs=202.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|| .|...|+-....++.|+..-++||||.|||.--++..+ ++. ..|.+++||+||..|+.|+++.+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a-----------~kgkr~yii~PT~~Lv~Q~~~kl 145 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLA-----------KKGKRVYIIVPTTTLVRQVYERL 145 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHH-----------hcCCeEEEEecCHHHHHHHHHHH
Confidence 355 89999999999999999999999999999974333332 332 25789999999999999999999
Q ss_pred HHhcCCCC-CeEEE-EECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHH
Q psy6409 1501 NKFGTPLG-IRTVL-VVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574 (1832)
Q Consensus 1501 ~~~~~~~g-~~v~~-l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~ 1574 (1832)
.+++...+ ..+.. ++|..+..+.. ..+.+ +.||+|+|.+-|...... +.--++++|++|.+|.++..+ ..
T Consensus 146 ~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lkas--kN 221 (1187)
T COG1110 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKAS--KN 221 (1187)
T ss_pred HHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhcc--cc
Confidence 99975554 33333 45554544322 23333 589999998765544332 111368999999999887654 34
Q ss_pred HHHHHHhCCCCCCC--------------CCCchhhhHHHHHh-----hhccccCcceEEEEEccCChHHH--HHHHHhcC
Q psy6409 1575 VQKILEYMPVTNLK--------------PDTEDAEDENKLLA-----NYNSKKKYRQTVMFTATMPPAVE--RLARSYLR 1633 (1832)
Q Consensus 1575 l~~Il~~l~~~~~~--------------~~~~~~~~~~~l~~-----~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~ 1633 (1832)
+..++..+....-. .............. ......+..+++..|||..+.-. .+.+..++
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 44444443311100 00000111111111 11233456789999999865432 23333333
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECc---hhHHHHHHHHHHHcCCcEEEEcCCCC
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ---KKGADVLAKGLEKLGYNACTLHGGKG 1710 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s---~~~a~~l~~~L~~~~~~v~~lHg~ls 1710 (1832)
+.++.......+|...+... .-...+.++++... .-.||||+. +..++.++++|...|+++..+|+.
T Consensus 302 ----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-- 371 (1187)
T COG1110 302 ----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-- 371 (1187)
T ss_pred ----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc--
Confidence 23344333444555444443 34445555555443 248999999 999999999999999999999984
Q ss_pred HHHHHHHHHHhhCCCCcEEEEc----ccccccCCCCC-CCEEEEeCCC
Q psy6409 1711 QEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMA 1753 (1832)
Q Consensus 1711 ~~~R~~il~~F~~g~~~VLVAT----dvl~~GIDip~-v~~VI~~d~P 1753 (1832)
.+..++.|..|+++|||.+ .++-||||+|+ +..+|.|+.|
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3788999999999999985 57999999996 5688888777
No 215
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=4.8e-19 Score=235.02 Aligned_cols=322 Identities=21% Similarity=0.244 Sum_probs=213.0
Q ss_pred CCcHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN---R-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g---~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+.+.|..++..+.+. . .+++.||||+|||.+++++++..+... ....++++++.|++.++.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 4488999999988753 4 789999999999999999998655331 225789999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHH-----h---------hcCCcEEEeCHHHHHHHHHccc-cc-c--CCceeEEEcc
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFR-----L---------RLGCEIVIATPGRLIDVLENRY-LV-L--NQCTYIVLDE 1562 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~-----l---------~~~~~IiVaTP~rl~~~l~~~~-~~-l--~~v~llViDE 1562 (1832)
+.++...+.....+.|.......... . .....++++||-.+........ .. + --.+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765444332212333222111000 0 0013456666665554222111 11 1 1347899999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
+|.+-+......+..++..+. .....+|++|||+|+.........+.....+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~------------------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~ 402 (733)
T COG1203 347 VHLYADETMLAALLALLEALA------------------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENA 402 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH------------------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccc
Confidence 997655433333333333322 12356999999999999998888877655544321
Q ss_pred cCCC---CcceEEEEEEcchhhHH-HHHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1643 VGKP---TERIEQIVYILSEQDKR-KKLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1643 ~~~~---~~~i~q~~~~~~~~~k~-~~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
...+ ...+.+..... ..... ..+..... -...++++|.|||+..|..++..|+..+..+..+||.++..+|..
T Consensus 403 ~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ 481 (733)
T COG1203 403 KFCPKEDEPGLKRKERVD-VEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREE 481 (733)
T ss_pred cccccccccccccccchh-hhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHH
Confidence 1000 00011110000 00000 01111111 125679999999999999999999998888999999999999988
Q ss_pred HHHHh----hCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCC--CccEEEEEeeCC
Q psy6409 1717 ALNSL----KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKD 1782 (1832)
Q Consensus 1717 il~~F----~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~ 1782 (1832)
.++.+ +.+...|+|||.+.+.|||+ +++++|-==.| +.+.+||+||++|.| ..|.++++....
T Consensus 482 ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 482 KERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 77754 45788899999999999999 58877665445 999999999999998 567777776654
No 216
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.81 E-value=1.5e-18 Score=230.23 Aligned_cols=324 Identities=21% Similarity=0.241 Sum_probs=211.8
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN---R-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g---r-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.+.+.|..++..+..+ . .+++.||||+|||.+++++++..+... .....+++++.|++.++.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 3488899999888863 4 789999999999999999998765321 235789999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHH-----H---------hcCCceeecCHHHHHHHHHcccc-c-c--CCceeEEEec
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFR-----L---------RLGCEIVIATPGRLIDVLENRYL-V-L--NQCTYIVLDE 887 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~-----l---------~~~~~IlV~TP~rL~d~l~~~~~-~-l--~~~~~lViDE 887 (1832)
..+....++......|.....-.... . .....+.++||-.+........- . + =..+++||||
T Consensus 267 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 267 KEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred HhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 98765544433322332221100000 0 01134555665554442221111 1 1 1347899999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
+|.+.+..--..+..++..+. .....+|++|||+|+........++.....+....
T Consensus 347 ~h~~~~~~~~~~l~~~i~~l~------------------------~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~ 402 (733)
T COG1203 347 VHLYADETMLAALLALLEALA------------------------EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENA 402 (733)
T ss_pred HHhhcccchHHHHHHHHHHHH------------------------hCCCCEEEEecCCCHHHHHHHHHHHhcccceeccc
Confidence 997665432222222222221 12356999999999999998888877665554431
Q ss_pred cCCCC---cceEEEEEEcchhhHH-HHHHHHH--HcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 968 VGKPT---ERIEQIVYILSEQDKR-KKLMEVL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 968 ~~~~~---~~i~q~~~~~~~~~k~-~~L~~~l--~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 1041 (1832)
...+. ..+.+... ....... ..+.... ....+.+++|-|||+..|..++..|+..+..++.+||.++..+|..
T Consensus 403 ~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ 481 (733)
T COG1203 403 KFCPKEDEPGLKRKER-VDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREE 481 (733)
T ss_pred cccccccccccccccc-hhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHH
Confidence 11000 00111100 0000110 0111111 1235678999999999999999999998888999999999999988
Q ss_pred HHHHH----hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCC--CCcEEEEEecCCCc
Q psy6409 1042 ALNSL----KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1042 il~~F----~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~ 1109 (1832)
.++.+ +.+...|+|||.+.+.||||. .+++|-= +..+.+.+||+||++|-| ..|.++.+......
T Consensus 482 ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 482 KERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred HHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 87754 457888999999999999994 7766643 456889999999999999 55777777666543
No 217
>KOG0949|consensus
Probab=99.80 E-value=1.8e-18 Score=214.32 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=124.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
+| .|..+|.+.+..+-.+..++++|||.+|||++....|=.+++. .+...||+++||++|+.|+.....
T Consensus 509 dF-~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe----------sD~~VVIyvaPtKaLVnQvsa~Vy 577 (1330)
T KOG0949|consen 509 DF-CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE----------SDSDVVIYVAPTKALVNQVSANVY 577 (1330)
T ss_pred cc-CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh----------cCCCEEEEecchHHHhhhhhHHHH
Confidence 34 6889999999999999999999999999999876666555543 356789999999999999988887
Q ss_pred Hhc-CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc---ccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1502 KFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1502 ~~~-~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~---~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
..+ ...-.+.+.+.|..+.+.+... -+|.|+|+-|+.+..+|... .-...+++++|+||+|.+....-.-..+.
T Consensus 578 aRF~~~t~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eq 655 (1330)
T KOG0949|consen 578 ARFDTKTFLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQ 655 (1330)
T ss_pred HhhccCccccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHH
Confidence 665 3333445566676665544331 25999999999999988773 34678999999999998876554545566
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~ 1624 (1832)
++..+| +.++++|||+.+..
T Consensus 656 ll~li~---------------------------CP~L~LSATigN~~ 675 (1330)
T KOG0949|consen 656 LLLLIP---------------------------CPFLVLSATIGNPN 675 (1330)
T ss_pred HHHhcC---------------------------CCeeEEecccCCHH
Confidence 655554 56899999987653
No 218
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.80 E-value=1.1e-17 Score=222.51 Aligned_cols=315 Identities=21% Similarity=0.261 Sum_probs=205.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+.|||.+++.+++ .|.+.|++-..|.|||+..+. ++.++... ......+|||||. .|..|+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~--------~~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY--------RGITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh--------cCCCCCEEEEeCh-HHHHHHHHHH
Confidence 78999999999886 578899999999999997543 33333221 1123458999996 6778899999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH---HhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
.+++. .++++.++|......... ......+|+|+|.+.+.... ..+.--.+++|||||||++-.. ...+..
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~--~Sklsk 312 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNE--NSLLSK 312 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCH--HHHHHH
Confidence 99874 356677777654322211 11235789999998775432 1223345789999999987432 222333
Q ss_pred HHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHHHHHHh-cCCCcEEE----------------
Q psy6409 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLARSY-LRRPATVY---------------- 1639 (1832)
Q Consensus 1578 Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~~~~~~-l~~p~~v~---------------- 1639 (1832)
++..+. ....+++|+|+-. .+.+++..+ +-.|..+.
T Consensus 313 alr~L~--------------------------a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~ 366 (1033)
T PLN03142 313 TMRLFS--------------------------TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEND 366 (1033)
T ss_pred HHHHhh--------------------------cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccc
Confidence 333332 1123566666421 111111100 00000000
Q ss_pred ------------------Ec--c--cCCCCcceEEEEEE-----------------------------------------
Q psy6409 1640 ------------------IG--S--VGKPTERIEQIVYI----------------------------------------- 1656 (1832)
Q Consensus 1640 ------------------i~--~--~~~~~~~i~q~~~~----------------------------------------- 1656 (1832)
.. . ...|. .....+.+
T Consensus 367 ~~e~i~~L~~~L~pf~LRR~KsdV~~~LPp-K~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~c 445 (1033)
T PLN03142 367 QQEVVQQLHKVLRPFLLRRLKSDVEKGLPP-KKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCC 445 (1033)
T ss_pred hHHHHHHHHHHhhHHHhhhhHHHHhhhCCC-ceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 00 0 00000 00000000
Q ss_pred ---------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1657 ---------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1657 ---------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
+....|...|..++... .+.+||||+......+.|...|...++....+||+++..+
T Consensus 446 nHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~e 525 (1033)
T PLN03142 446 NHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGED 525 (1033)
T ss_pred CCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 01123333444444332 4568999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC---CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCC
Q psy6409 1714 RELALNSLKGG---SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1782 (1832)
Q Consensus 1714 R~~il~~F~~g---~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~ 1782 (1832)
|..+++.|... ..-+|++|.+++.|||+..+++||+||.|+|+..+.|++||+-|.|+... ++.|++.+
T Consensus 526 Rq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 526 RDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred HHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999753 34578999999999999999999999999999999999999999998754 44456665
No 219
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.6e-18 Score=204.50 Aligned_cols=166 Identities=22% Similarity=0.308 Sum_probs=132.9
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~ 1687 (1832)
..|+|++|||+.+.-...... . .+...-+|...+...+...+.......|+.-+.. ..+.++||-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~----vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---N----VVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---c----eeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 359999999987654322211 1 1112223444444555566666666666666554 256899999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeC-----CCCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD-----MAKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d-----~P~s~~~yiQR 1762 (1832)
|+.|..+|..+|+.+.++|++...-+|.+++..++.|.++|||.-++|-+|+|+|+|++|..+| +..|..+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 46799999999
Q ss_pred hcccccCCCccEEEEEeeCCC
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|||+| +-.|.+++|...-.
T Consensus 539 IGRAAR-N~~GkvIlYAD~iT 558 (663)
T COG0556 539 IGRAAR-NVNGKVILYADKIT 558 (663)
T ss_pred HHHHhh-ccCCeEEEEchhhh
Confidence 999999 45799999987643
No 220
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.79 E-value=7.1e-18 Score=212.12 Aligned_cols=306 Identities=26% Similarity=0.370 Sum_probs=202.8
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+++ .|| .|...|.-....++.|+..-++||||.|||.- .+.+-.++ ...|.+++||+||..|+.
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~-----------a~kgkr~yii~PT~~Lv~ 139 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYL-----------AKKGKRVYIIVPTTTLVR 139 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHH-----------HhcCCeEEEEecCHHHHH
Confidence 34444 355 89999999999999999999999999999974 44333333 235789999999999999
Q ss_pred HHHHHHHHhcCCCC-CeEEE-EEcCCchHHHH---HHHhc-CCceeecCHHHHHHHHHccccccC--CceeEEEecchhh
Q psy6409 820 QIEEETNKFGTPLG-IRTVL-VVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEADRM 891 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~-i~v~~-~~Gg~~~~~~~---~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH~l 891 (1832)
|+++.+.+++...+ ..+.. ++|..+..+.. ..+.+ +.+|+|+|.+-|...+. .|. ++++|++|.+|-+
T Consensus 140 Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e----~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 140 QVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH----HhcccCCCEEEEccHHHH
Confidence 99999999976655 44333 44544433322 23333 58999999876644332 344 6899999999987
Q ss_pred hcCCChHHHHHHHHhCCCCCC--------------CCCCchhHHHHHHHHh-----hccccccceEEEEEecCChHHH--
Q psy6409 892 IDMGFEPDVQKILEYMPVTNL--------------KPDTEDAEDENKLLAN-----YNSKKKYRQTVMFTATMPPAVE-- 950 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~--------------~~~~~~~~~~~~ll~~-----~~~~~~~~q~v~~SATl~~~v~-- 950 (1832)
+-.+ ..+..++..+....- .............++. .....+.-+++..|||..+.-.
T Consensus 216 Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~ 293 (1187)
T COG1110 216 LKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRL 293 (1187)
T ss_pred Hhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchH
Confidence 7544 233333333211000 0000111112222111 1234456789999999855432
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcc---cchHHHHHHHHHHcCCcE
Q psy6409 951 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ---KKGADVLAKGLEKLGYNA 1027 (1832)
Q Consensus 951 ~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s---~~~~~~l~~~L~~~g~~v 1027 (1832)
.+.+..++ +.++.......++...+... .....+.++++... .-.||||+. ++.++.++++|+..|+++
T Consensus 294 ~LfReLlg----FevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 294 KLFRELLG----FEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred HHHHHHhC----CccCccchhhhheeeeeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 23333332 34444333344444443333 34445555555432 348999999 899999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCcEEEec----ccccccCCCcC-cCEEEEcCCC
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMA 1078 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~~~VLVaT----dv~~rGlDip~-v~~VI~~d~p 1078 (1832)
..+|++ ....++.|..|+++|||++ .++-||||+|. +.++|.|+.|
T Consensus 366 ~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 366 ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999984 3788999999999999987 58999999997 4588988875
No 221
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.9e-17 Score=211.98 Aligned_cols=326 Identities=22% Similarity=0.310 Sum_probs=217.6
Q ss_pred CCCCcHHHHHHHHHHHcC----CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQN----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~g----rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
...+++-|..|+..+... .-.++.|.||||||.+|+-.|-..+. .|..+|||+|-.+|-.|+..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------------~GkqvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------------QGKQVLVLVPEIALTPQLLA 263 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------------cCCEEEEEeccccchHHHHH
Confidence 357788999999999765 56899999999999999887766552 47899999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHH---HHHHh-cCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQ---GFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 899 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~ 899 (1832)
.|+.. +|.++..++++.+..+. |.... ....|||||-..+ ...+.++.+|||||=|-- .|..+
T Consensus 264 rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~---sYKq~ 330 (730)
T COG1198 264 RFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDS---SYKQE 330 (730)
T ss_pred HHHHH---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccc---cccCC
Confidence 99986 45788899999886554 33333 3489999996655 346889999999999932 11100
Q ss_pred HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE
Q psy6409 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979 (1832)
Q Consensus 900 i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~ 979 (1832)
........-++.+........+|+-|||.. ++.+....-.....+...............+
T Consensus 331 -----------------~~prYhARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~i 391 (730)
T COG1198 331 -----------------DGPRYHARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEI 391 (730)
T ss_pred -----------------cCCCcCHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceE
Confidence 000011112333334445688999999964 6655544222122222222111111111111
Q ss_pred EEcc-hhhHH-----HHHHHHHHc--CCCCCEEEEEcccc----------------------------------------
Q psy6409 980 YILS-EQDKR-----KKLMEVLNR--GVKKPVIIFVNQKK---------------------------------------- 1011 (1832)
Q Consensus 980 ~~~~-~~~k~-----~~L~~~l~~--~~~~~vIVFv~s~~---------------------------------------- 1011 (1832)
..+. +.... ..|++.+.. ..+.++|+|+|.+.
T Consensus 392 iDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~ 471 (730)
T COG1198 392 IDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQ 471 (730)
T ss_pred EeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCC
Confidence 1111 11111 233443322 25667888888765
Q ss_pred --------------------hHHHHHHHHHHc--CCcEEEEcCCCCHHH--HHHHHHHHhCCCCcEEEecccccccCCCc
Q psy6409 1012 --------------------GADVLAKGLEKL--GYNACTLHGGKGQEQ--RELALNSLKGGSKDILVATDVAGRGIDIK 1067 (1832)
Q Consensus 1012 --------------------~~~~l~~~L~~~--g~~v~~lhg~~~~~~--R~~il~~F~~G~~~VLVaTdv~~rGlDip 1067 (1832)
.++.+.+.|... +..+..+.++.+... -+..++.|.+|+.+|||.|.+++.|.|+|
T Consensus 472 ~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp 551 (730)
T COG1198 472 EPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFP 551 (730)
T ss_pred CCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcc
Confidence 244444444443 456666777665543 46789999999999999999999999999
Q ss_pred CcCEEEEcCCCC------------CHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1068 DVSMVINYDMAK------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1068 ~v~~VI~~d~p~------------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
++++|...|.-. ...-++|-.|||||.+..|.+++-+...|-..+..+..
T Consensus 552 ~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 552 NVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred cceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 999888554421 35568999999999999999999888887666666544
No 222
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.78 E-value=2.9e-17 Score=222.74 Aligned_cols=354 Identities=18% Similarity=0.215 Sum_probs=205.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+.+.+.+.+...||+ ++|.|.+.+. .+..++++++.||||+|||++|++|++.+.. .+.+++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi 297 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVI 297 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEE
Confidence 344677788888996 8899998666 4446889999999999999999999986542 2458999
Q ss_pred EccchhHHHHHHH-HHHHhcCCCC--CeEEEEEcCCchH-----HH----------------------------------
Q psy6409 811 MAPTRELAQQIEE-ETNKFGTPLG--IRTVLVVGGLSRE-----EQ---------------------------------- 848 (1832)
Q Consensus 811 laPtreLa~Qi~~-~~~~~~~~~~--i~v~~~~Gg~~~~-----~~---------------------------------- 848 (1832)
.+||++|+.|+.. .+..+.+.++ ++++.+.|+...- .+
T Consensus 298 ~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~ 377 (850)
T TIGR01407 298 STNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELN 377 (850)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhcc
Confidence 9999999999865 4555544334 7777777755320 00
Q ss_pred --------HH------------------------HHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-
Q psy6409 849 --------GF------------------------RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG- 895 (1832)
Q Consensus 849 --------~~------------------------~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g- 895 (1832)
+. .....++|||+...-|+..+......+....+|||||||+|.+..
T Consensus 378 ~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 378 LKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 00 001136789998887776664443345667899999999987521
Q ss_pred --Ch-----HHHHHHHHhCCC----------------------CCCCC-CC----------------------c-hhHHH
Q psy6409 896 --FE-----PDVQKILEYMPV----------------------TNLKP-DT----------------------E-DAEDE 922 (1832)
Q Consensus 896 --f~-----~~i~~Il~~l~~----------------------~~~~~-~~----------------------~-~~~~~ 922 (1832)
|+ ..+..++..+.. ..... .. . .....
T Consensus 458 ~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 537 (850)
T TIGR01407 458 NQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQL 537 (850)
T ss_pred HHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 00 011111111000 00000 00 0 00000
Q ss_pred HHHHHh---------------------hc-----------c-------------ccccceEEEEEecCCh--HHHHHHHH
Q psy6409 923 NKLLAN---------------------YN-----------S-------------KKKYRQTVMFTATMPP--AVERLARS 955 (1832)
Q Consensus 923 ~~ll~~---------------------~~-----------~-------------~~~~~q~v~~SATl~~--~v~~~~~~ 955 (1832)
...+.. .. . ......+|++|||+.. ....+...
T Consensus 538 ~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~ 617 (850)
T TIGR01407 538 RKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQL 617 (850)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHh
Confidence 000000 00 0 0112468899999963 12323222
Q ss_pred hc-CCCcEEEE-cccCCCCcceEEE-EEE---c------chhhHHHH----HHHHHHcCCCCCEEEEEcccchHHHHHHH
Q psy6409 956 YL-RRPATVYI-GSVGKPTERIEQI-VYI---L------SEQDKRKK----LMEVLNRGVKKPVIIFVNQKKGADVLAKG 1019 (1832)
Q Consensus 956 ~l-~~p~~v~~-~~~~~~~~~i~q~-~~~---~------~~~~k~~~----L~~~l~~~~~~~vIVFv~s~~~~~~l~~~ 1019 (1832)
+. .+.....+ .+... .-.+. ++. + +...-... +.+++. ..++++|||++|....+.++..
T Consensus 618 lGl~~~~~~~~~~spf~---~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~ 693 (850)
T TIGR01407 618 LGLTDVHFNTIEPTPLN---YAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITSPKILVLFTSYEMLHMVYDM 693 (850)
T ss_pred cCCCccccceecCCCCC---HHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHH
Confidence 21 12111122 11111 01111 111 0 11111222 233333 3457899999999999999999
Q ss_pred HHHcC--CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC--EEEEcCCCC----------------
Q psy6409 1020 LEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS--MVINYDMAK---------------- 1079 (1832)
Q Consensus 1020 L~~~g--~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~--~VI~~d~p~---------------- 1079 (1832)
|.... .....+..+.. ..|..+++.|++|+..||+||+.+.+|||+|+.. +||...+|.
T Consensus 694 L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~ 772 (850)
T TIGR01407 694 LNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLE 772 (850)
T ss_pred HhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHH
Confidence 97521 12223333333 5789999999999999999999999999999987 555566542
Q ss_pred --------------CHhHHHHHhcccccCCCCcEEEEEecC
Q psy6409 1080 --------------SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106 (1832)
Q Consensus 1080 --------------s~~~yvQr~GRaGR~g~~G~ai~~~~~ 1106 (1832)
.+..+.|-+||.=|...+.-+++++..
T Consensus 773 ~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 773 QEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred HhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 123467999999997765334444443
No 223
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.5e-17 Score=213.73 Aligned_cols=303 Identities=22% Similarity=0.327 Sum_probs=205.0
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCe
Q psy6409 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIR 1510 (1832)
Q Consensus 1432 ~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~ 1510 (1832)
+.+.++-...-+|+++|||||||.. +|.+.+ ..+ -..+..+.+.-|.|--|.-++..+.. ++...|-.
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTq--lP~~ll--e~g-------~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQ--LPQFLL--EEG-------LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHH--HHHHHH--hhh-------cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 3344455566789999999999985 444321 111 13456899999998666666666543 44444433
Q ss_pred EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFEPDVQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1511 v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~~~l~~Il~~l~~~~~~~ 1589 (1832)
|+.-+-..+ .......|-+.|.|.|+..+.+... |+.+++|||||||. -++.+| ++..+
T Consensus 126 VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDi------lLgll------- 185 (845)
T COG1643 126 VGYSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDI------LLGLL------- 185 (845)
T ss_pred eeEEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHH------HHHHH-------
Confidence 332221111 1123578999999999999887664 89999999999993 111111 11111
Q ss_pred CCchhhhHHHHHhh-hccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEE-EEcchhh-HHHHH
Q psy6409 1590 DTEDAEDENKLLAN-YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV-YILSEQD-KRKKL 1666 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~-~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~-~~~~~~~-k~~~l 1666 (1832)
.. ....+....+|.+|||+... .+. .|+.+...+.+.....|. +-.| ....... -...+
T Consensus 186 ------------k~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR~fPV---ei~Y~~~~~~d~~l~~ai 247 (845)
T COG1643 186 ------------KDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGRTYPV---EIRYLPEAEADYILLDAI 247 (845)
T ss_pred ------------HHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCCccce---EEEecCCCCcchhHHHHH
Confidence 11 11122347899999999653 344 455555555555444443 2222 1111222 22333
Q ss_pred HHHH---HhCCCCcEEEEECchhHHHHHHHHHHH--c--CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccC
Q psy6409 1667 MEVL---NRGVKKPVIIFVNQKKGADVLAKGLEK--L--GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1739 (1832)
Q Consensus 1667 ~~~l---~~~~~~~vIVFv~s~~~a~~l~~~L~~--~--~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GI 1739 (1832)
...+ .....+.+|||.+.....+.+++.|.. + .+.+..+||.|+.+++..+++---.|+-+|++||++++.+|
T Consensus 248 ~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSL 327 (845)
T COG1643 248 VAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSL 327 (845)
T ss_pred HHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccce
Confidence 3333 334678999999999999999999987 3 47789999999999999998888888777999999999999
Q ss_pred CCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1740 DIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1740 Dip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
-||+|..||.-+. |-|-++..||.|||||-+ +|.|+=+++.++.
T Consensus 328 TI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~ 389 (845)
T COG1643 328 TIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF 389 (845)
T ss_pred eeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH
Confidence 9999999997433 458889999999999975 8999999998543
No 224
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.76 E-value=1.5e-16 Score=208.60 Aligned_cols=130 Identities=23% Similarity=0.345 Sum_probs=113.4
Q ss_pred HHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccC
Q psy6409 987 KRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGI 1064 (1832)
Q Consensus 987 k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGl 1064 (1832)
+...|++.+.. ..+.++||||+++..++.+++.|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 34555555543 2467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcCEEEEcCC-----CCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHH
Q psy6409 1065 DIKDVSMVINYDM-----AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117 (1832)
Q Consensus 1065 Dip~v~~VI~~d~-----p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~ 1117 (1832)
|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+..+...+.+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~ 567 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDE 567 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHH
Confidence 9999999998875 78999999999999996 6799999999766544444433
No 225
>KOG0949|consensus
Probab=99.76 E-value=1.6e-17 Score=206.01 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=116.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|..+|.+.+..+=.+..++++|||.+|||.+---.|=..+. ..+...+|+++||++|+.|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLR----------esD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLR----------ESDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHh----------hcCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999999999999999999999999874444433321 2356689999999999999988887654
Q ss_pred -CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc---ccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 830 -TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 830 -~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~---~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
...-.+...+.|....+-+.. .-.|+|+|+-|+.+-.+|... .-....++++|+||+|.+....-+-.++.++.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 333334445555554332222 126999999999998777663 33677899999999998876554445555555
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 948 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~ 948 (1832)
..| +.++++|||+.+.
T Consensus 659 li~---------------------------CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LIP---------------------------CPFLVLSATIGNP 674 (1330)
T ss_pred hcC---------------------------CCeeEEecccCCH
Confidence 443 5689999998653
No 226
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.76 E-value=1e-16 Score=217.41 Aligned_cols=358 Identities=16% Similarity=0.182 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~----~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
+++...+.+...||. ++|.|.+++. .+..++++++.||||+|||++|++|++.+.. .+.++||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi 297 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVI 297 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEE
Confidence 445677788888995 8999998776 4446889999999999999999999986542 2457999
Q ss_pred EcCcHHHHHHHHH-HHHHhcCCCC--CeEEEEECCcchH-----------------HH----------------------
Q psy6409 1486 MAPTRELAQQIEE-ETNKFGTPLG--IRTVLVVGGLSRE-----------------EQ---------------------- 1523 (1832)
Q Consensus 1486 LaPtreLa~Qi~~-~~~~~~~~~g--~~v~~l~gg~~~~-----------------~~---------------------- 1523 (1832)
.+||++|..|+.. .+..+.+.++ ++++.+.|+...- ..
T Consensus 298 ~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~ 377 (850)
T TIGR01407 298 STNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELN 377 (850)
T ss_pred EeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhcc
Confidence 9999999999754 5555544333 6777777644210 00
Q ss_pred --------H------------------------HHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC-
Q psy6409 1524 --------G------------------------FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG- 1570 (1832)
Q Consensus 1524 --------~------------------------~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g- 1570 (1832)
+ ......++|||+.-.-|..-+......+....+|||||||+|.+..
T Consensus 378 ~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~ 457 (850)
T TIGR01407 378 LKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAE 457 (850)
T ss_pred CCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHH
Confidence 0 0001236888988877766554333334556899999999976421
Q ss_pred ------C-hHHHHHHHHhCCC----------------------CCCCCCC-----------------------c-hhhhH
Q psy6409 1571 ------F-EPDVQKILEYMPV----------------------TNLKPDT-----------------------E-DAEDE 1597 (1832)
Q Consensus 1571 ------f-~~~l~~Il~~l~~----------------------~~~~~~~-----------------------~-~~~~~ 1597 (1832)
+ ...+..++..+.. ....... . .....
T Consensus 458 ~~~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 537 (850)
T TIGR01407 458 NQLQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQL 537 (850)
T ss_pred HHhcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 0 0011111110000 0000000 0 00000
Q ss_pred HHHHhh---------------------hc-----------c-------------ccCcceEEEEEccCChH-HHHHHHHh
Q psy6409 1598 NKLLAN---------------------YN-----------S-------------KKKYRQTVMFTATMPPA-VERLARSY 1631 (1832)
Q Consensus 1598 ~~l~~~---------------------~~-----------~-------------~~~~~q~v~~SATl~~~-~~~~~~~~ 1631 (1832)
...... .. . ......+|++|||++.. -.......
T Consensus 538 ~~~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~ 617 (850)
T TIGR01407 538 RKFDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQL 617 (850)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHh
Confidence 000000 00 0 01224688999999732 11222222
Q ss_pred cC--CCcEEEEcccCCC-CcceEEEEEE--c------chhhHHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHHH
Q psy6409 1632 LR--RPATVYIGSVGKP-TERIEQIVYI--L------SEQDKRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEK 1697 (1832)
Q Consensus 1632 l~--~p~~v~i~~~~~~-~~~i~q~~~~--~------~~~~k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~ 1697 (1832)
+. +.....+.+.... .... ..+.. . +...-...+...+. ....+++|||++|....+.++..|..
T Consensus 618 lGl~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~ 696 (850)
T TIGR01407 618 LGLTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNE 696 (850)
T ss_pred cCCCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence 22 2111222111111 0111 11111 1 11111222322222 23457899999999999999999975
Q ss_pred cC--CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC--EEEEeCCCC-------------------
Q psy6409 1698 LG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS--MVINYDMAK------------------- 1754 (1832)
Q Consensus 1698 ~~--~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~--~VI~~d~P~------------------- 1754 (1832)
.. .+..++..+.. ..|..+++.|++|+..||+||+.+.+|||+|+.. +||...+|.
T Consensus 697 ~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 697 LPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred hccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 21 12223333333 5789999999999999999999999999999876 566666552
Q ss_pred -----------CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1755 -----------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1755 -----------s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
.+..+.|-+||.-|..+.--++++++..
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 2234679999999976543344444443
No 227
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.76 E-value=4e-17 Score=213.88 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccccc
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~G 1738 (1832)
.+...+...+... .+.++||||+++..|+.|+..|...|+.+..+||++++.+|..+++.|+.|++.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3455666655543 46789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEeCC-----CCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1739 IDIKDVSMVINYDM-----AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1739 IDip~v~~VI~~d~-----P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+|+|++++||++|. |.+..+|+||+|||||. ..|.|++|++..+
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~ 558 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKIT 558 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCC
Confidence 99999999999874 78999999999999996 7899999999643
No 228
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.76 E-value=1.3e-16 Score=212.31 Aligned_cols=340 Identities=19% Similarity=0.241 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
++.|||.+++.-++ .|.+.|++-+.|.|||+..+.. +.++... ......+|||||. .|..|+..++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~--------~~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEY--------RGITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHh--------cCCCCCEEEEeCh-HHHHHHHHHH
Confidence 68899999998765 4778999999999999975443 3333211 1123458999996 6678899999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHH---HhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC-------
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFR---LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG------- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~---l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g------- 895 (1832)
.+++. .++++.++|.......... .....+|+|+|++.+.... ..+.--.+.+|||||||++-+..
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~--~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK--TALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH--HHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 99874 3566667775443222111 1235789999999886432 22333467899999999865421
Q ss_pred ------------------ChHHHHHHHHhCCCCCCCCC-------------CchhH---HHHHHHHh---------hccc
Q psy6409 896 ------------------FEPDVQKILEYMPVTNLKPD-------------TEDAE---DENKLLAN---------YNSK 932 (1832)
Q Consensus 896 ------------------f~~~i~~Il~~l~~~~~~~~-------------~~~~~---~~~~ll~~---------~~~~ 932 (1832)
...++-.++..+.... ... ..... .+..++.. +...
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~-f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEI-FSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCc-CCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 0111122222221000 000 00000 01111111 1111
Q ss_pred cccceEEEEEecCChHHHHHHHHh---------------------------cCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSY---------------------------LRRPATVYIGSVGKPTERIEQIVYILSEQ 985 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~---------------------------l~~p~~v~~~~~~~~~~~i~q~~~~~~~~ 985 (1832)
-+......+...|++.-..+...+ ...|..+.-.....+ .......+...
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~---~~~~e~lie~S 470 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP---YTTGEHLVENS 470 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCc---ccchhHHhhhh
Confidence 112222233333433222211111 122221110000000 00000112334
Q ss_pred hHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC---CCcEEEecccc
Q psy6409 986 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG---SKDILVATDVA 1060 (1832)
Q Consensus 986 ~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G---~~~VLVaTdv~ 1060 (1832)
.|+..|..+|.. ..+.++|||+......+.|.++|...|+.++.+||+++..+|..+++.|... .+-+|++|.++
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAG 550 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAG 550 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccc
Confidence 566666666653 3567999999999999999999999999999999999999999999999753 34579999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
+.|||+..+++||+||++.++....|++||+-|.|+.. .++.|++.+
T Consensus 551 GlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 551 GLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred ccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999874 455666665
No 229
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.75 E-value=2e-17 Score=186.03 Aligned_cols=189 Identities=42% Similarity=0.666 Sum_probs=165.2
Q ss_pred ccccCCCCChhhhhhcccccCC-CcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 3 EKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 3 ~~~~~~~~~p~Q~~~ip~~l~g-~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
..+++.+|+|.|.++++.++.+ +.++++++||||||.+++++++..+... ....+||++||++|+.|+.
T Consensus 2 ~~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~~~~ 71 (201)
T smart00487 2 EKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG----------KGKRVLVLVPTRELAEQWA 71 (201)
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc----------CCCcEEEEeCCHHHHHHHH
Confidence 5688999999999999999999 9999999999999999999999766432 1356999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCc-cEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~-~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+.++..........+++|.....+...+..++ +|+++||++|.+.+..+......+.++||||||.+...++...+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 151 (201)
T smart00487 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLE 151 (201)
T ss_pred HHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHH
Confidence 9999988766656777888888777777787777 999999999999999887888899999999999999888999998
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.++..++ +
T Consensus 152 ~~~~~~~------------------------------------------------------------------------~ 159 (201)
T smart00487 152 KLLKLLP------------------------------------------------------------------------K 159 (201)
T ss_pred HHHHhCC------------------------------------------------------------------------c
Confidence 8887662 1
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-.+.+++|||.|..+...+..|+.+++.+..+.
T Consensus 160 ~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 160 NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 267899999999999999999999999998776
No 230
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.9e-16 Score=198.60 Aligned_cols=340 Identities=22% Similarity=0.263 Sum_probs=234.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|+++|.-..-.++.|+ |+.+.||+|||+++.+|++.... .|..+-|++|+--||.|-++.+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------------~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------------QGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------------cCCCeEEEcCCHHHHHHHHHHH
Confidence 465 79999999999988885 78999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHcc------ccccCCceeEEEecchhhhcC-C--
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENR------YLVLNQCTYIVLDEADRMIDM-G-- 895 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~------~~~l~~~~~lViDEaH~l~d~-g-- 895 (1832)
..+...+|++|+++.++.+..+..... .|+|+++|..-+- |.|... ......+.+.||||||.|+=+ .
T Consensus 140 ~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 140 GPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 999999999999999988866544443 6999999987653 333222 224456889999999976521 1
Q ss_pred ------------ChHHHHHHHHhCCCC-----------------------------CCCCCCch-hH-------------
Q psy6409 896 ------------FEPDVQKILEYMPVT-----------------------------NLKPDTED-AE------------- 920 (1832)
Q Consensus 896 ------------f~~~i~~Il~~l~~~-----------------------------~~~~~~~~-~~------------- 920 (1832)
....+..++..+... ++ .+..+ ..
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~l-y~~~~~~~~~~~i~~AL~A~~ 296 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDL-YSEEHVGTTLTQVNVALHAHA 296 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccc-cCcchhHHHHHHHHHHHHHHH
Confidence 111122222222110 00 00000 00
Q ss_pred ---------------------------------HHHHHHHhh------------------ccccccceEEEEEecCChHH
Q psy6409 921 ---------------------------------DENKLLANY------------------NSKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 921 ---------------------------------~~~~ll~~~------------------~~~~~~~q~v~~SATl~~~v 949 (1832)
.+...+..- .-.+.+..+.++|.|.....
T Consensus 297 l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~ 376 (764)
T PRK12326 297 LLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG 376 (764)
T ss_pred HHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH
Confidence 000000000 00123456888999988777
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
+.|...|--+ + + .-+...+...... -..+.....|...+.+-+.. ..+.||||.+.+....+.++..|...|++
T Consensus 377 ~Ef~~iY~l~-V-v-~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 377 EQLRQFYDLG-V-S-VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHHHHHhCCc-E-E-ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 7776666433 2 2 2222333322221 13344566677777665543 36779999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc---------------CcCEEEEcCCCCCHhHHHHHhccc
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------DVSMVINYDMAKSIEDYTHRIGRT 1091 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------~v~~VI~~d~p~s~~~yvQr~GRa 1091 (1832)
..++++.-...+-..|-+.-+.| .|.|||++|+||.||. +==+||-...+.|..-=.|-.|||
T Consensus 454 h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 454 AVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred ceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 99999874443333333333333 5899999999999986 223899888999999999999999
Q ss_pred ccCCCCcEEEEEecCCC
Q psy6409 1092 GRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1092 GR~g~~G~ai~~~~~~d 1108 (1832)
||-|.+|.+-.|++-+|
T Consensus 532 GRQGDpGss~f~lSleD 548 (764)
T PRK12326 532 GRQGDPGSSVFFVSLED 548 (764)
T ss_pred ccCCCCCceeEEEEcch
Confidence 99999999999999887
No 231
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.74 E-value=9.8e-17 Score=189.70 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=127.2
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+|..|||..+.-..... +.-+.-.+.+.+...+. +..-+....+..|+.-+.. ..+.++||-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 46999999997654322211 11222233333333332 2233333344444444332 355789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.|.++|.+.|+++.++|++...-+|.+++..++.|.++|||.-+++-+|||+|.|++|..+|. ..|-.+.+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876 5589999999
Q ss_pred hcccccCCCCcEEEEEecCCCchH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHL 1111 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~ 1111 (1832)
+|||+|. -.|.+|++...-...+
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHH
Confidence 9999995 4599998876544333
No 232
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=7.2e-16 Score=193.52 Aligned_cols=342 Identities=23% Similarity=0.263 Sum_probs=237.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-..-.++.|+ |+.+.||+|||+++.+|++.... .|..|-|++|+--||.|-+.++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL------------~G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL------------QGRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH------------cCCCeEEEcCCHHHHHHHHHHH
Confidence 576 89999999998888875 78999999999999999986543 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcCC---
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDMG--- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~g--- 1570 (1832)
..+...+|++|.++.++.+..+..... .|||+.+|..-+- +.|+.+. .....+.+.||||+|.++=..
T Consensus 140 ~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 140 GPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 999999999999999988866544333 5899999987653 4444332 234568999999999754210
Q ss_pred ------------ChHHHHHHHHhCCCCC----------------------------CCCCCch-hh---h-HHHHHhh--
Q psy6409 1571 ------------FEPDVQKILEYMPVTN----------------------------LKPDTED-AE---D-ENKLLAN-- 1603 (1832)
Q Consensus 1571 ------------f~~~l~~Il~~l~~~~----------------------------~~~~~~~-~~---~-~~~l~~~-- 1603 (1832)
....+..+...+.... ....... .. . ...+.+.
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 1111222222221100 0000000 00 0 0000000
Q ss_pred -------------------------------------------h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1604 -------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1604 -------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
+ +.-+.+..+.++|.|.....+
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~ 377 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGE 377 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHH
Confidence 0 001223457799999988777
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+ +.+.+...|...... -..+.....|..++++-+.. ..+.||||.|.|+...+.|+..|...|++.
T Consensus 378 Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h 454 (764)
T PRK12326 378 QLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPA 454 (764)
T ss_pred HHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcc
Confidence 777666433 223333444432221 13344566677777766543 367899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC---------------CCCEEEEeCCCCCHHHHHHHhcccc
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------DVSMVINYDMAKSIEDYTHRIGRTG 1767 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------~v~~VI~~d~P~s~~~yiQRiGRaG 1767 (1832)
.++++.-...+-..|-+.=+.| .|.|||+.++||.||. .=-+||-...|.|..-=-|-.||||
T Consensus 455 ~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaG 532 (764)
T PRK12326 455 VVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAG 532 (764)
T ss_pred eeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccc
Confidence 9999875544444443333333 4899999999999986 2248999999999999999999999
Q ss_pred cCCCccEEEEEeeCCCh
Q psy6409 1768 RAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1768 R~g~~G~ai~~~~~~d~ 1784 (1832)
|-|.+|.+..|++=+|.
T Consensus 533 RQGDpGss~f~lSleDd 549 (764)
T PRK12326 533 RQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cCCCCCceeEEEEcchh
Confidence 99999999999997763
No 233
>KOG0922|consensus
Probab=99.74 E-value=1.6e-16 Score=194.19 Aligned_cols=304 Identities=18% Similarity=0.247 Sum_probs=204.9
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCC
Q psy6409 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGI 1509 (1832)
Q Consensus 1431 ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~ 1509 (1832)
.+.+..+-+..-+|++++||||||. .+|=+ +.+.. -.....+.+..|.|--|.-+++... +.+..+|-
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG-------~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAG-------FASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcc-------cccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 3455555667789999999999997 34433 22211 1122338999998877776655543 44444554
Q ss_pred eEEEEE--CCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC
Q psy6409 1510 RTVLVV--GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1510 ~v~~l~--gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~ 1587 (1832)
.|+..+ .+.+. ....|.+.|-|.|+.-+.... .++++++||+||||.=.= .-+.+
T Consensus 126 ~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl--~TDiL------------ 182 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSL--HTDIL------------ 182 (674)
T ss_pred eeeeEEEecccCC--------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhh--HHHHH------------
Confidence 443322 12111 146799999999987766544 488999999999992000 01111
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhh----HH
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD----KR 1663 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~----k~ 1663 (1832)
..++..+...+....++++|||+... . ...|+.....+.+.....|. +..+..-+..+ -.
T Consensus 183 ----------lGlLKki~~~R~~LklIimSATlda~--k-fS~yF~~a~i~~i~GR~fPV---ei~y~~~p~~dYv~a~~ 246 (674)
T KOG0922|consen 183 ----------LGLLKKILKKRPDLKLIIMSATLDAE--K-FSEYFNNAPILTIPGRTFPV---EILYLKEPTADYVDAAL 246 (674)
T ss_pred ----------HHHHHHHHhcCCCceEEEEeeeecHH--H-HHHHhcCCceEeecCCCCce---eEEeccCCchhhHHHHH
Confidence 12222333344557899999999643 3 34555554455554444333 22222222211 22
Q ss_pred HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----CC----cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc
Q psy6409 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL----GY----NACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735 (1832)
Q Consensus 1664 ~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~----~~----~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl 1735 (1832)
..+.++....+.+-+|||....+..+.+++.|.+. +- -+..+||.|+.+++..+++.--.|.-+|++||+++
T Consensus 247 ~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIA 326 (674)
T KOG0922|consen 247 ITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIA 326 (674)
T ss_pred HHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEccee
Confidence 23333434456778999999999999999988764 11 24679999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCCChh
Q psy6409 1736 GRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1736 ~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~ 1785 (1832)
+..|-||.+..||.-++ |-|-++-.||.|||||.| +|.|+-+++.++.+
T Consensus 327 ETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 327 ETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred eeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 99999999999997433 568899999999999975 89999999987653
No 234
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=1.1e-16 Score=199.73 Aligned_cols=294 Identities=20% Similarity=0.224 Sum_probs=189.9
Q ss_pred CCCcHHHHHHHHHHh----cCC-cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~-dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
..|+++|..||..+. .|+ -+|+++.||+|||.+++-.|...+ + .....+||||+-+++|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~-r---------~~~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI-K---------SGWVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHH-h---------cchhheeeEEechHHHHHHHHH
Confidence 478999999998765 443 499999999999998644443333 2 3456789999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----ccccCCceeEEEccchhhhcCCChH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
.+..+... +-.+-.+.+-... ..+.|.|+|.+.+...+... .+....+++|||||||+=+ ..
T Consensus 234 af~~~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~ 300 (875)
T COG4096 234 AFEDFLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YS 300 (875)
T ss_pred HHHHhCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----Hh
Confidence 99888543 3333333322111 14789999999999888654 3456679999999999743 34
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHH-------------------hcCC
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS-------------------YLRR 1634 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~-------------------~l~~ 1634 (1832)
..+.|++++.. -++++|||+...++.-.-. ++..
T Consensus 301 ~~~~I~dYFdA---------------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvp 353 (875)
T COG4096 301 EWSSILDYFDA---------------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVP 353 (875)
T ss_pred hhHHHHHHHHH---------------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCC
Confidence 44566666531 1233466665433322222 2322
Q ss_pred CcEEEEcc----cCCCCcce--------------EEEEEEcc------hhhHH----HHHHHHHHh--CC--CCcEEEEE
Q psy6409 1635 PATVYIGS----VGKPTERI--------------EQIVYILS------EQDKR----KKLMEVLNR--GV--KKPVIIFV 1682 (1832)
Q Consensus 1635 p~~v~i~~----~~~~~~~i--------------~q~~~~~~------~~~k~----~~l~~~l~~--~~--~~~vIVFv 1682 (1832)
+..+.+.. .+-..... .+.+.... ..... ..+.+.|.. .. ..++||||
T Consensus 354 y~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa 433 (875)
T COG4096 354 YKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFA 433 (875)
T ss_pred CCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEe
Confidence 22222211 00000000 00000000 01112 233344444 21 46899999
Q ss_pred CchhHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeCCCCC
Q psy6409 1683 NQKKGADVLAKGLEKL-----GYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1755 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~-----~~~v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s 1755 (1832)
.+..||+.+...|.+. +--+..+.|.-.+. ...++.|.. .--+|.|+.+.+..|||+|.|-++|.+..-.|
T Consensus 434 ~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrS 511 (875)
T COG4096 434 KNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRS 511 (875)
T ss_pred eCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhh
Confidence 9999999999999875 23355666654433 334555543 44578999999999999999999999999999
Q ss_pred HHHHHHHhcccccC
Q psy6409 1756 IEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1756 ~~~yiQRiGRaGR~ 1769 (1832)
.+-|.||+||+-|.
T Consensus 512 ktkF~QMvGRGTRl 525 (875)
T COG4096 512 KTKFKQMVGRGTRL 525 (875)
T ss_pred HHHHHHHhcCcccc
Confidence 99999999999993
No 235
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.73 E-value=4.7e-16 Score=204.67 Aligned_cols=308 Identities=19% Similarity=0.155 Sum_probs=184.0
Q ss_pred CCcHHHHHHHHHHh----c------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----Q------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
-|.++|..|+..++ . .+..+++.|||||||++++..+...+. ....+++|||+|+.+|..
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----------~~~~~~vl~lvdR~~L~~ 307 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----------LLKNPKVFFVVDRRELDY 307 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----------hcCCCeEEEEECcHHHHH
Confidence 37889999998764 2 246899999999999987666654332 134688999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCc-eeEEEccchhhhcCC
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQC-TYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v-~llViDEaH~ll~~g 1570 (1832)
|+.+.|..++.. .. .+..+...-...+. ....|+|+|.+++...+.... .....- .+||+||||+....
T Consensus 308 Q~~~~f~~~~~~----~~--~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~- 380 (667)
T TIGR00348 308 QLMKEFQSLQKD----CA--ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG- 380 (667)
T ss_pred HHHHHHHhhCCC----CC--cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-
Confidence 999999998532 11 11112221112222 246899999999986543321 111111 28999999986432
Q ss_pred ChHHHHHHH-HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc----CCCcEEEEcccCC
Q psy6409 1571 FEPDVQKIL-EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL----RRPATVYIGSVGK 1645 (1832)
Q Consensus 1571 f~~~l~~Il-~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l----~~p~~v~i~~~~~ 1645 (1832)
.+..++ ..+| ....++||||+-..........+ ..+...+. -...
T Consensus 381 ---~~~~~l~~~~p--------------------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~-~~~A 430 (667)
T TIGR00348 381 ---ELAKNLKKALK--------------------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYF-ITDA 430 (667)
T ss_pred ---HHHHHHHhhCC--------------------------CCcEEEEeCCCcccccccccccccCCCCCeEEEee-HHHH
Confidence 233333 3443 24689999998532111010111 11111100 0000
Q ss_pred CC-cceEEE-EEE------c--------------------chh-------------------hHHHHHH-HHHHh-----
Q psy6409 1646 PT-ERIEQI-VYI------L--------------------SEQ-------------------DKRKKLM-EVLNR----- 1672 (1832)
Q Consensus 1646 ~~-~~i~q~-~~~------~--------------------~~~-------------------~k~~~l~-~~l~~----- 1672 (1832)
.. +.+..+ +.. + .+. .....+. +++.+
T Consensus 431 I~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~ 510 (667)
T TIGR00348 431 IRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFK 510 (667)
T ss_pred hhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhh
Confidence 00 000000 000 0 000 0001111 11111
Q ss_pred -CCCCcEEEEECchhHHHHHHHHHHHc-----CCcEEEEcCCCCHH---------------------HHHHHHHHhhC-C
Q psy6409 1673 -GVKKPVIIFVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQE---------------------QRELALNSLKG-G 1724 (1832)
Q Consensus 1673 -~~~~~vIVFv~s~~~a~~l~~~L~~~-----~~~v~~lHg~ls~~---------------------~R~~il~~F~~-g 1724 (1832)
....+++|||.++.+|..++..|... +..+..+++..+.. ....+++.|++ +
T Consensus 511 ~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~ 590 (667)
T TIGR00348 511 ELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEE 590 (667)
T ss_pred hcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCC
Confidence 12478999999999999999988664 24455666654332 12478899976 7
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC-C--C-ccEEEEEee
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA-G--K-EGLAVSFCT 1780 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~-g--~-~G~ai~~~~ 1780 (1832)
.++|||+++.+..|+|.|.+++++...+..+ ..++|.+||+.|. + + .|..+-|+.
T Consensus 591 ~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 591 NPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 8999999999999999999998887776565 4689999999993 3 2 255555544
No 236
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=4.3e-16 Score=200.13 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=224.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.| ..|+++|.-.--++..| -|+.+.||+|||+++.+|++.... .|..+-|++|+--||.|-+..+
T Consensus 79 lG-m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al------------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL------------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hC-CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 46 47888888776666666 489999999999999999986542 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCCC-
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMGF- 896 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf- 896 (1832)
..+...+|++|++++++.+..+....+ .++|++||..-+ .|.|.... .....+.|+||||+|.++ |...
T Consensus 144 ~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 144 RPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred HHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 999999999999999988766554443 499999998876 23343321 234788999999999865 2211
Q ss_pred --------------hHHHHHHHHhCCCC------------CC------C--CCCch-hHHHHHH----------------
Q psy6409 897 --------------EPDVQKILEYMPVT------------NL------K--PDTED-AEDENKL---------------- 925 (1832)
Q Consensus 897 --------------~~~i~~Il~~l~~~------------~~------~--~~~~~-~~~~~~l---------------- 925 (1832)
...+..++..+... .. + .-++. ......+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 11122222222100 00 0 00000 0000000
Q ss_pred ------------HHhhccc-------------------------------------------------------------
Q psy6409 926 ------------LANYNSK------------------------------------------------------------- 932 (1832)
Q Consensus 926 ------------l~~~~~~------------------------------------------------------------- 932 (1832)
+......
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 0000000
Q ss_pred cccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcc
Q psy6409 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1009 (1832)
Q Consensus 933 ~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s 1009 (1832)
+.+..+.++|.|.......|...|--+ +..-+...|...... -..+.....|...+.+-+.. ..+.||||-+.|
T Consensus 382 r~Y~kLsGMTGTa~te~~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAFEFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HhcchhccCCCCCHHHHHHHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 111234445566544444444444322 222222333222222 12445666777777665543 367899999999
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCc----------------------
Q psy6409 1010 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1067 (1832)
Q Consensus 1010 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip---------------------- 1067 (1832)
.+..+.|+..|...|++..++++.....+-+.+-+.-+ .-.|.|||++|+||-||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 99999999999999999888888644333333333323 335899999999999994
Q ss_pred ---------------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1068 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1068 ---------------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+==+||--..+.|..-=.|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 223888888888998889999999999999999999998773
No 237
>KOG4150|consensus
Probab=99.72 E-value=9.3e-17 Score=188.30 Aligned_cols=347 Identities=14% Similarity=0.062 Sum_probs=234.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
-+.+..+.-.....+|..++..+-+|+++++.-.|.+||.++|.+.....+.. ......+++.|+++|++
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~----------~~~s~~~~~~~~~~~~~ 345 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL----------CHATNSLLPSEMVEHLR 345 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc----------CcccceecchhHHHHhh
Confidence 34445556677889999999999999999999999999999998888765433 23445789999999987
Q ss_pred HHHHHHHHhc---CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccchhhh
Q psy6409 1495 QIEEETNKFG---TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1495 Qi~~~~~~~~---~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH~ll 1567 (1832)
...+.+.-.. +.+.--++..+.+.+......-.+.+..++++.|..+...... +...+-...+++.||+|.++
T Consensus 346 ~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~ 425 (1034)
T KOG4150|consen 346 NGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL 425 (1034)
T ss_pred ccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee
Confidence 6443322111 1112235666777776666666778899999999988765533 23344456789999999654
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 1647 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~ 1647 (1832)
.. |+..+...+..+. . +...-......|++-.+||+...+......+.-+...+ +...+.|.
T Consensus 426 ~~-~~~~~~~~~R~L~---------------~-L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~L-i~~DGSPs 487 (1034)
T KOG4150|consen 426 FP-TKALAQDQLRALS---------------D-LIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELEL-VTIDGSPS 487 (1034)
T ss_pred cc-hhhHHHHHHHHHH---------------H-HHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEE-EEecCCCC
Confidence 32 3333333322221 0 00011122457899999999887765544333222221 22222222
Q ss_pred cceEEEEEEcc------hh---hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHc----C----CcEEEEcCC
Q psy6409 1648 ERIEQIVYILS------EQ---DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----G----YNACTLHGG 1708 (1832)
Q Consensus 1648 ~~i~q~~~~~~------~~---~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~----~----~~v~~lHg~ 1708 (1832)
.-.+++.+-+ .. .+......++.. ..+-++|.||.+++-|+.+....+.. + -.+..+.||
T Consensus 488 -~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 488 -SEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred -ccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 2234444332 11 122222222221 24578999999999999877655432 1 135568899
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC--ChhH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD--DSHL 1786 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~--d~~~ 1786 (1832)
.+.++|..+...+-.|+..-+|||++++.||||...+.|++.++|.|+.++.|..|||||.++...++.++... |..+
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888777655 4444
Q ss_pred HHHH
Q psy6409 1787 FYDL 1790 (1832)
Q Consensus 1787 ~~~l 1790 (1832)
+...
T Consensus 647 ~~HP 650 (1034)
T KOG4150|consen 647 MSHP 650 (1034)
T ss_pred hcCc
Confidence 4333
No 238
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.71 E-value=1.5e-16 Score=198.44 Aligned_cols=296 Identities=21% Similarity=0.247 Sum_probs=189.5
Q ss_pred CCCCCcHHHHHHHHHHH----cCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGL----QNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il----~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
+-..|+++|..||..+. +|++ +++++.||+|||.+++--|. .|.+ .....++|||+-+++|+.|.
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~-rL~r---------~~~~KRVLFLaDR~~Lv~QA 231 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIID-RLIK---------SGWVKRVLFLADRNALVDQA 231 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHH-HHHh---------cchhheeeEEechHHHHHHH
Confidence 34578999999998765 3543 99999999999998655443 3322 34567899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----ccccCCceeEEEecchhhhcCCC
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----YLVLNQCTYIVLDEADRMIDMGF 896 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----~~~l~~~~~lViDEaH~l~d~gf 896 (1832)
+..|..+... +-.+..+.+-.. ...++|.|+|.+++...+... .+....+++|||||||+=+
T Consensus 232 ~~af~~~~P~-~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---- 298 (875)
T COG4096 232 YGAFEDFLPF-GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---- 298 (875)
T ss_pred HHHHHHhCCC-ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----
Confidence 9999888543 222222222111 015799999999998887654 3456679999999999733
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc-CCCcEE------------
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATV------------ 963 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-~~p~~v------------ 963 (1832)
......|+.++.. -+++++||+...++.-...|+ ..|...
T Consensus 299 ~~~~~~I~dYFdA---------------------------~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfL 351 (875)
T COG4096 299 YSEWSSILDYFDA---------------------------ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFL 351 (875)
T ss_pred HhhhHHHHHHHHH---------------------------HHHhhccCcccccccccccccCCCcceeecHHHHhhcccc
Confidence 3444566666531 123447776544333222333 333222
Q ss_pred ------EEcc----cCCCCcce--------------EEEEEEc----------chhhHHHHHHHHHHcC--C--CCCEEE
Q psy6409 964 ------YIGS----VGKPTERI--------------EQIVYIL----------SEQDKRKKLMEVLNRG--V--KKPVII 1005 (1832)
Q Consensus 964 ------~~~~----~~~~~~~i--------------~q~~~~~----------~~~~k~~~L~~~l~~~--~--~~~vIV 1005 (1832)
.+.. .+...... .+.+... ..+.-...+.+.+... . .+++||
T Consensus 352 vpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIv 431 (875)
T COG4096 352 VPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIV 431 (875)
T ss_pred CCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEE
Confidence 1110 00000000 0000000 0111123344455542 2 458999
Q ss_pred EEcccchHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHh--CCCCcEEEecccccccCCCcCcCEEEEcCCC
Q psy6409 1006 FVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQEQRELALNSLK--GGSKDILVATDVAGRGIDIKDVSMVINYDMA 1078 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~il~~F~--~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p 1078 (1832)
||.+..+|+.+...|... |--+..+.|.-.+. +.. ++.|. +.--+|.|+.+++..|||+|.|.+++.+..-
T Consensus 432 Fa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~-q~~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~V 509 (875)
T COG4096 432 FAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA-QAL-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKV 509 (875)
T ss_pred EeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh-HHH-HHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhh
Confidence 999999999999999765 22355666654433 333 34443 3444688999999999999999999999999
Q ss_pred CCHhHHHHHhcccccC
Q psy6409 1079 KSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1079 ~s~~~yvQr~GRaGR~ 1094 (1832)
.|..-|.|++||+-|.
T Consensus 510 rSktkF~QMvGRGTRl 525 (875)
T COG4096 510 RSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhHHHHHHHhcCcccc
Confidence 9999999999999994
No 239
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.71 E-value=3.9e-16 Score=175.55 Aligned_cols=188 Identities=41% Similarity=0.671 Sum_probs=153.4
Q ss_pred HcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..++.+|+++|.++++.++.+ +++++++|||||||.+++.+++..+.. ....+++|++|++.++.|+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~----------~~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR----------GKGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc----------cCCCcEEEEeCCHHHHHHHHH
Confidence 357889999999999999998 999999999999999999999876532 124679999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCC-ceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~-~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
.+..++...........++.........+..+. +|+++|++.+.+.+.........+++||+||||++....+...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 999887665545666666666555555555565 9999999999999888766778899999999998887677777777
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
++..++ ...+++++|||+++.....+..++..+..+....
T Consensus 153 ~~~~~~-------------------------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 153 LLKLLP-------------------------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHHhCC-------------------------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 776552 2468999999999999999988888766665543
No 240
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.5e-15 Score=195.31 Aligned_cols=342 Identities=19% Similarity=0.220 Sum_probs=226.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--.+.. .-|+-+.||+|||+++.+|++.... .|..|-|++|+--||.|-+.++
T Consensus 79 lGm-~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al------------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNAL------------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hCC-CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 564 788888766555544 4589999999999999999986543 4778999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|++|.+++++.+..+..... .++|+++|..-| .+.|+.+. .....+.++||||+|.++ |..
T Consensus 144 ~~l~~~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 144 RPLYEFLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred HHHhcccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 999999999999999988776554433 389999998876 34444332 234788999999999854 111
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------------------CC------CCCC
Q psy6409 1571 -------------FEPDVQKILEYMPVT----------------------------------------NL------KPDT 1591 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~----------------------------------------~~------~~~~ 1591 (1832)
....+..++..+... .. ....
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 111122222222100 00 0000
Q ss_pred chhhhH----HHHHhhh--ccc----------------------------------------------------------
Q psy6409 1592 EDAEDE----NKLLANY--NSK---------------------------------------------------------- 1607 (1832)
Q Consensus 1592 ~~~~~~----~~l~~~~--~~~---------------------------------------------------------- 1607 (1832)
...... ..+.+.. ...
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 000000 0000000 000
Q ss_pred cCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECc
Q psy6409 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQ 1684 (1832)
Q Consensus 1608 ~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s 1684 (1832)
+.+..+.+||.|......++..-|--+ +...+...|....... ..+.....|..++.+-+.. ..+.||||-+.|
T Consensus 382 r~Y~kLsGMTGTa~te~~Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~S 458 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAFEFRQIYGLD---VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTAT 458 (913)
T ss_pred HhcchhccCCCCCHHHHHHHHHHhCCC---EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 011233356666655555555544332 2222333443322221 3345566777777766653 367899999999
Q ss_pred hhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCC----------------------
Q psy6409 1685 KKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK---------------------- 1742 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip---------------------- 1742 (1832)
+...+.|+..|...+++..++++.....+-+.|-+.-+. -.|.|||+.++||.||.
T Consensus 459 Ve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~ 536 (913)
T PRK13103 459 IETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQ 536 (913)
T ss_pred HHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHH
Confidence 999999999999999998888876554444444433333 35899999999999994
Q ss_pred ---------------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1743 ---------------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1743 ---------------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+=-+||-...|.|..-=-|-.|||||-|.+|.+-.|++-+|.
T Consensus 537 ~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 537 IKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 224788888899988889999999999999999999998764
No 241
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.3e-15 Score=192.93 Aligned_cols=338 Identities=22% Similarity=0.282 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g----~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..+++-|..|+..+... .-.++.+.||||||-+|+-.|-..+. .|..||||+|-.+|..|+...
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~------------~GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA------------QGKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH------------cCCEEEEEeccccchHHHHHH
Confidence 46788999999998765 56899999999999999887776653 488999999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHH---HHHhh-cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQ---GFRLR-LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV 1575 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~---~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l 1575 (1832)
|+..+ |.+++.++++.+..+. |.... ..+.|||+|-..+ ...+.++++|||||=|-- .|.
T Consensus 265 f~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~---sYK--- 328 (730)
T COG1198 265 FKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDS---SYK--- 328 (730)
T ss_pred HHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccc---ccc---
Confidence 98864 5778889999886653 33333 3589999996544 346889999999999932 111
Q ss_pred HHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc-ccCCCCcceEEEE
Q psy6409 1576 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG-SVGKPTERIEQIV 1654 (1832)
Q Consensus 1576 ~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~-~~~~~~~~i~q~~ 1654 (1832)
.....-..+.. .+.+........+|+-|||++-.- ...-.-..-..+... ..+.....-.+.+
T Consensus 329 -------------q~~~prYhARd-vA~~Ra~~~~~pvvLgSATPSLES--~~~~~~g~y~~~~L~~R~~~a~~p~v~ii 392 (730)
T COG1198 329 -------------QEDGPRYHARD-VAVLRAKKENAPVVLGSATPSLES--YANAESGKYKLLRLTNRAGRARLPRVEII 392 (730)
T ss_pred -------------CCcCCCcCHHH-HHHHHHHHhCCCEEEecCCCCHHH--HHhhhcCceEEEEccccccccCCCcceEE
Confidence 00000000000 111222335578999999976433 222211111111111 1111101111222
Q ss_pred EEcchhhHH-----HHHHHHHHhC--CCCcEEEEECchhHHHH-------------------------------------
Q psy6409 1655 YILSEQDKR-----KKLMEVLNRG--VKKPVIIFVNQKKGADV------------------------------------- 1690 (1832)
Q Consensus 1655 ~~~~~~~k~-----~~l~~~l~~~--~~~~vIVFv~s~~~a~~------------------------------------- 1690 (1832)
....+.... ..|++.+... .+.++|+|+|.+.-+-.
T Consensus 393 Dmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~ 472 (730)
T COG1198 393 DMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQE 472 (730)
T ss_pred eccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCC
Confidence 222221111 3444444332 45678888888544321
Q ss_pred -----------------------HHHHHHHc--CCcEEEEcCCCCHH--HHHHHHHHhhCCCCcEEEEcccccccCCCCC
Q psy6409 1691 -----------------------LAKGLEKL--GYNACTLHGGKGQE--QRELALNSLKGGSKDILVATDVAGRGIDIKD 1743 (1832)
Q Consensus 1691 -----------------------l~~~L~~~--~~~v~~lHg~ls~~--~R~~il~~F~~g~~~VLVATdvl~~GIDip~ 1743 (1832)
+.+.|... +..+..+.++.+.. .-+..+..|.+|+++|||.|..++.|.|+|+
T Consensus 473 ~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~ 552 (730)
T COG1198 473 PIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPN 552 (730)
T ss_pred CCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCccc
Confidence 22222221 33455555554433 3467899999999999999999999999999
Q ss_pred CCEEEEeCCCC------------CHHHHHHHhcccccCCCccEEEEEeeCCChhHHHH---------HHHHhhcCCCCCC
Q psy6409 1744 VSMVINYDMAK------------SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD---------LKQMMISSPVSTC 1802 (1832)
Q Consensus 1744 v~~VI~~d~P~------------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~---------l~~~l~~~~~~~~ 1802 (1832)
+.+|...|.-. ....+.|-.|||||++++|.+++-....|-..+.. ..+.|...+.-.+
T Consensus 553 vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~ 632 (730)
T COG1198 553 VTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGL 632 (730)
T ss_pred ceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCC
Confidence 99988655321 35568899999999999999988866655322222 2344444444566
Q ss_pred Chh
Q psy6409 1803 PPE 1805 (1832)
Q Consensus 1803 ~~~ 1805 (1832)
||.
T Consensus 633 PPf 635 (730)
T COG1198 633 PPF 635 (730)
T ss_pred CCh
Confidence 765
No 242
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.69 E-value=1.4e-15 Score=200.33 Aligned_cols=296 Identities=18% Similarity=0.137 Sum_probs=177.3
Q ss_pred CcHHHHHHHHHHHc----------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 751 PTPIQRQAIPIGLQ----------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 751 pt~iQ~~ai~~il~----------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
|.++|..|+..+.. .+..+++.+||||||++++..+...+. ....+++|||+|+.+|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~----------~~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE----------LLKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh----------hcCCCeEEEEECcHHHHHH
Confidence 78889999987642 246999999999999987765543321 1346899999999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc--ccccCCc-eeEEEecchhhhcCCC
Q psy6409 821 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR--YLVLNQC-TYIVLDEADRMIDMGF 896 (1832)
Q Consensus 821 i~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~--~~~l~~~-~~lViDEaH~l~d~gf 896 (1832)
+.+.|..++... ..+..+...-...+. ....|+|+|.+++...+... ......- .+||+||||+....+
T Consensus 309 ~~~~f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~- 381 (667)
T TIGR00348 309 LMKEFQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE- 381 (667)
T ss_pred HHHHHHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH-
Confidence 999999985321 011112221112222 24789999999997644321 1111111 289999999864322
Q ss_pred hHHHHHHH-HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHh---cCCCcEEEEcccCCC
Q psy6409 897 EPDVQKIL-EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSY---LRRPATVYIGSVGKP 971 (1832)
Q Consensus 897 ~~~i~~Il-~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~---l~~p~~v~~~~~~~~ 971 (1832)
+...+ ..+| ....++||||.-.....-. ..| ...+... ..-....
T Consensus 382 ---~~~~l~~~~p--------------------------~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI 431 (667)
T TIGR00348 382 ---LAKNLKKALK--------------------------NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAI 431 (667)
T ss_pred ---HHHHHHhhCC--------------------------CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHh
Confidence 22222 3332 2468999999732111000 111 1111111 1000000
Q ss_pred Cc----ceEEEEE----Ec--------------------chh-------------------hHHHHHHH-HHHc------
Q psy6409 972 TE----RIEQIVY----IL--------------------SEQ-------------------DKRKKLME-VLNR------ 997 (1832)
Q Consensus 972 ~~----~i~q~~~----~~--------------------~~~-------------------~k~~~L~~-~l~~------ 997 (1832)
.. .+..... .+ .+. .....+.. ++..
T Consensus 432 ~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~ 511 (667)
T TIGR00348 432 RDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE 511 (667)
T ss_pred hcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh
Confidence 00 0000000 00 000 00011111 1111
Q ss_pred CCCCCEEEEEcccchHHHHHHHHHHc-----CCcEEEEcCCCCHH---------------------HHHHHHHHHhC-CC
Q psy6409 998 GVKKPVIIFVNQKKGADVLAKGLEKL-----GYNACTLHGGKGQE---------------------QRELALNSLKG-GS 1050 (1832)
Q Consensus 998 ~~~~~vIVFv~s~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~---------------------~R~~il~~F~~-G~ 1050 (1832)
....+++|||.++.+|..+++.|... +..+.++++..... ....+++.|++ +.
T Consensus 512 ~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 512 LFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred cccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 12478999999999999999988665 24455666654332 22468889976 78
Q ss_pred CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1051 ~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
++|||.++.+.+|+|.|.+++++...+-++ ..++|.+||+-|.
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 899999999999999999998887776555 4689999999993
No 243
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.6e-14 Score=183.59 Aligned_cols=341 Identities=22% Similarity=0.272 Sum_probs=229.0
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..|+ |..+.||-|||+++.||++... -.|..|-|+...--||.-=+..+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnA------------L~GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNA------------LTGKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHH------------hcCCceEEEecchhhhhhhHHHH
Confidence 465 78999998887777774 8999999999999999997432 23666888888899998888888
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++..+++..+..... .|+|+++|..-|- |.|.... .....+.|.||||||.++ |...-
T Consensus 140 g~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 140 GKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 888888999999999887766544333 6999999987663 4443322 245678899999999754 21111
Q ss_pred ---------------HHHHHHHHhCCC----------------------------CCCC---------------------
Q psy6409 898 ---------------PDVQKILEYMPV----------------------------TNLK--------------------- 913 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~----------------------------~~~~--------------------- 913 (1832)
..+..++..+.. .++.
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 111112221110 0000
Q ss_pred ------------------------CCCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHHH
Q psy6409 914 ------------------------PDTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 914 ------------------------~~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~~ 951 (1832)
+.....+.+...+..-+. .+-+..+.++|+|.......
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~E 377 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQE 377 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHH
Confidence 000000001111100000 12234677888887666666
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEE
Q psy6409 952 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1028 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~ 1028 (1832)
|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.|+||.|.|.+.++.++..|...|++..
T Consensus 378 f~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~ 454 (925)
T PRK12903 378 FIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHT 454 (925)
T ss_pred HHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCce
Confidence 66555332 2222333333333221 3445666777777665543 3677999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHhCC-CCcEEEecccccccCCCcCcC--------EEEEcCCCCCHhHHHHHhcccccCCCCcE
Q psy6409 1029 TLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDVS--------MVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099 (1832)
Q Consensus 1029 ~lhg~~~~~~R~~il~~F~~G-~~~VLVaTdv~~rGlDip~v~--------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ 1099 (1832)
++++.-. +++.-+-. ..| .-.|.|||++|+||.||.--. |||....|.|..-=.|-.|||||-|.+|.
T Consensus 455 vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGs 531 (925)
T PRK12903 455 VLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGE 531 (925)
T ss_pred eecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCc
Confidence 9998633 34332222 344 346999999999999996322 99999999998888899999999999999
Q ss_pred EEEEecCCCc
Q psy6409 1100 AVSFCTKDDS 1109 (1832)
Q Consensus 1100 ai~~~~~~d~ 1109 (1832)
+-.|++-+|.
T Consensus 532 s~f~lSLeD~ 541 (925)
T PRK12903 532 SRFFISLDDQ 541 (925)
T ss_pred ceEEEecchH
Confidence 9999998873
No 244
>KOG0924|consensus
Probab=99.65 E-value=2.5e-15 Score=180.35 Aligned_cols=306 Identities=19% Similarity=0.250 Sum_probs=198.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-Hhc
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFG 1504 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~ 1504 (1832)
-...+.+.+..+-.++-+++++.||||||.- +|-+ +... .-.....+-+..|.|.-|.-+++... +++
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~Qy--L~ed-------GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQY--LYED-------GYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHH--HHhc-------ccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 3445566666666777799999999999984 3332 2221 11234468888999998888777665 454
Q ss_pred CCCCCeEEEE--ECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1505 TPLGIRTVLV--VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1505 ~~~g~~v~~l--~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
..+|..|..- ..+.+. ...-|-+.|-|.|+.-.... -.|.++++||+||||.=.- --+.+.
T Consensus 426 ~~lG~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERsl--NtDilf------ 488 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSL--NTDILF------ 488 (1042)
T ss_pred CccccccceEEEeeecCC--------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhccc--chHHHH------
Confidence 4555433221 122221 13567789999887543321 2477899999999993110 011111
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhh-
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD- 1661 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~- 1661 (1832)
.++......+....+|..||||.. +.+...|.+-|. +.+.....|.. -.+...+..+
T Consensus 489 ----------------Gllk~~larRrdlKliVtSATm~a--~kf~nfFgn~p~-f~IpGRTyPV~---~~~~k~p~eDY 546 (1042)
T KOG0924|consen 489 ----------------GLLKKVLARRRDLKLIVTSATMDA--QKFSNFFGNCPQ-FTIPGRTYPVE---IMYTKTPVEDY 546 (1042)
T ss_pred ----------------HHHHHHHHhhccceEEEeeccccH--HHHHHHhCCCce-eeecCCccceE---EEeccCchHHH
Confidence 122222223356789999999954 455554544444 44443333332 1121111111
Q ss_pred HHHHHHHHHH---hCCCCcEEEEECchhHHHHHHHHHH----Hc------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1662 KRKKLMEVLN---RGVKKPVIIFVNQKKGADVLAKGLE----KL------GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1662 k~~~l~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~----~~------~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
-..++...+. ..+.+-+|||.......+..+..+. ++ ++.|..+++.|++.-+..+++....|.-++
T Consensus 547 Veaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~ 626 (1042)
T KOG0924|consen 547 VEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKC 626 (1042)
T ss_pred HHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeE
Confidence 1122222222 2356789999988766665555443 32 678899999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
+|||++++..+.||++.+||..++ |-|-++--||.|||||.| +|.|+-+++.+
T Consensus 627 IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 627 IVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred EEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 999999999999999999997443 668888899999999976 89999999975
No 245
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=4.1e-14 Score=179.87 Aligned_cols=340 Identities=23% Similarity=0.287 Sum_probs=229.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-.+..|+ |.-+.||-|||+++.+|++...+ .|..|-|+...--||.-=..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL------------~GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNAL------------TGKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHh------------cCCceEEEecchhhhhhhHHHH
Confidence 576 78899988776666664 89999999999999999974332 3667888888999999888899
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++..+.++...... -.|||+.+|..-| .+.|+.+. .....+.+.||||+|.++ |..
T Consensus 140 g~vy~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 140 GKVFNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred HHHHHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 99888999999999888776654333 2589999998765 35555432 235678999999999743 110
Q ss_pred -------------ChHHHHHHHHhCCC----------------------------CCCCCCCch----------------
Q psy6409 1571 -------------FEPDVQKILEYMPV----------------------------TNLKPDTED---------------- 1593 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~----------------------------~~~~~~~~~---------------- 1593 (1832)
+...+..++..+.. .+ ..+...
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~n-Ly~~~n~~l~h~i~~AL~A~~l 296 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKN-LYDIENSELVHRIQNALRAHKV 296 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCc-ccChhhHHHHHHHHHHHHHHHH
Confidence 11111222221110 00 000000
Q ss_pred ------------------------------hhhHHHHHhh---h---------------ccccCcceEEEEEccCChHHH
Q psy6409 1594 ------------------------------AEDENKLLAN---Y---------------NSKKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1594 ------------------------------~~~~~~l~~~---~---------------~~~~~~~q~v~~SATl~~~~~ 1625 (1832)
....-+.+.. + +.-+.+..+.+||.|....-.
T Consensus 297 f~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~ 376 (925)
T PRK12903 297 MKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQ 376 (925)
T ss_pred HhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0000000000 0 000123356689999877666
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
++...|--+ +...+...|....... ..+.....|..+++.-+.. ..+.||||.|.|+..++.|+..|...|++.
T Consensus 377 Ef~~iY~l~---Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 377 EFIDIYNMR---VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HHHHHhCCC---EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 776655433 2223334444333322 3344566777777765543 367899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhhCC-CCcEEEEcccccccCCCCCC--------CEEEEeCCCCCHHHHHHHhcccccCCCcc
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGG-SKDILVATDVAGRGIDIKDV--------SMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g-~~~VLVATdvl~~GIDip~v--------~~VI~~d~P~s~~~yiQRiGRaGR~g~~G 1773 (1832)
.++++.-...+-..|- ..| .-.|.|||+.++||.||.-- -+||....|.|..-=-|-.|||||-|.+|
T Consensus 454 ~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 9999864433333332 344 34689999999999999622 28999999999888889999999999999
Q ss_pred EEEEEeeCCCh
Q psy6409 1774 LAVSFCTKDDS 1784 (1832)
Q Consensus 1774 ~ai~~~~~~d~ 1784 (1832)
.+..|++-.|.
T Consensus 531 ss~f~lSLeD~ 541 (925)
T PRK12903 531 ESRFFISLDDQ 541 (925)
T ss_pred cceEEEecchH
Confidence 99999987764
No 246
>KOG0923|consensus
Probab=99.64 E-value=8.2e-15 Score=176.26 Aligned_cols=307 Identities=18% Similarity=0.252 Sum_probs=205.3
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH-HHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET-NKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~-~~~ 1503 (1832)
.-+++-.+.+.++-...-+||.+.||||||. .+|-+. .. ..-...|.++-+..|.|--|..++... ..+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL--~E------aGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYL--YE------AGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHH--Hh------cccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 4466677788888888889999999999997 455432 21 112335666889999998888866555 445
Q ss_pred cCCCCCeEEEE--ECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh-hhcCCChHHHHHHHH
Q psy6409 1504 GTPLGIRTVLV--VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-MIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1504 ~~~~g~~v~~l--~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~-ll~~gf~~~l~~Il~ 1580 (1832)
+..+|..|..- +.+.. ....-|=+.|.|.|+.-+... ..|..+++|||||||. -+. -+.+-.++
T Consensus 335 gvkLG~eVGYsIRFEdcT--------SekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~---TDILfgLv- 401 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCT--------SEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLH---TDILFGLV- 401 (902)
T ss_pred CcccccccceEEEecccc--------CcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhh---hhHHHHHH-
Confidence 55554333211 11111 123557789999988766543 3688899999999993 111 11111111
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
..+...++...+++.|||+... .+. .|+.+...+.+...-.|. .-++...++.
T Consensus 402 ---------------------KDIar~RpdLKllIsSAT~DAe--kFS-~fFDdapIF~iPGRRyPV---di~Yt~~PEA 454 (902)
T KOG0923|consen 402 ---------------------KDIARFRPDLKLLISSATMDAE--KFS-AFFDDAPIFRIPGRRYPV---DIFYTKAPEA 454 (902)
T ss_pred ---------------------HHHHhhCCcceEEeeccccCHH--HHH-HhccCCcEEeccCcccce---eeecccCCch
Confidence 1112223456799999999543 343 455554444443332222 2334444444
Q ss_pred hHHHHH-HHHHH---hCCCCcEEEEECchhHHHHHHHHHHH----cC-----CcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1661 DKRKKL-MEVLN---RGVKKPVIIFVNQKKGADVLAKGLEK----LG-----YNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1661 ~k~~~l-~~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~----~~-----~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
+-+.+. ..++. ..+.+-+|||..-....+.....|.. +| +-+..+|+.++++.+..|++---.|.-+
T Consensus 455 dYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 455 DYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred hHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 433332 22332 23567899999988777666666543 23 4577899999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|++||++++..|.|++|..||.-++ |-|-++-.||+|||||.| +|+|+-+++.-
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 9999999999999999999997443 557888999999999986 89999999953
No 247
>KOG4150|consensus
Probab=99.63 E-value=2.8e-15 Score=176.13 Aligned_cols=346 Identities=14% Similarity=0.077 Sum_probs=234.7
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 739 l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
+-+.+..+.-+....+|.++|..+-+|+++++.-.|.|||.+++.+.....+.. ......+++.||++|+
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~----------~~~s~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL----------CHATNSLLPSEMVEHL 344 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc----------CcccceecchhHHHHh
Confidence 344555566677789999999999999999999999999999999888765432 3345578999999999
Q ss_pred HHHHHHHHHhcC---CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc----ccCCceeEEEecchhh
Q psy6409 819 QQIEEETNKFGT---PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRM 891 (1832)
Q Consensus 819 ~Qi~~~~~~~~~---~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~----~l~~~~~lViDEaH~l 891 (1832)
+...+.+.-... .+.--++..+.|.+..+...-.+.+..++++.|.+....+.-+.+ .+-...+++.||+|..
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 876544432211 112234555666666666666677899999999998766654433 2334578999999944
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCC
Q psy6409 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP 971 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~ 971 (1832)
. .-|+..+...++++. .+..-+. .....|++-.|||+...++.....+--+.......+ ..
T Consensus 425 ~-~~~~~~~~~~~R~L~---------------~L~~~F~-~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D--GS 485 (1034)
T KOG4150|consen 425 L-FPTKALAQDQLRALS---------------DLIKGFE-ASINMGVYDGDTPYKDRTRLRSELANLSELELVTID--GS 485 (1034)
T ss_pred e-cchhhHHHHHHHHHH---------------HHHHHHH-hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec--CC
Confidence 3 335555444444331 1111111 123578999999998777655444433333222211 11
Q ss_pred CcceEEEEEEcc---------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHc----C----CcEEEEcC
Q psy6409 972 TERIEQIVYILS---------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKL----G----YNACTLHG 1032 (1832)
Q Consensus 972 ~~~i~q~~~~~~---------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~----g----~~v~~lhg 1032 (1832)
+..-.+.+.+.+ ...++.....++.+ ..+-++|-||.+++.|+.+....++. + -.+..+.|
T Consensus 486 Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG 565 (1034)
T KOG4150|consen 486 PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG 565 (1034)
T ss_pred CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC
Confidence 222233343321 11222222222222 24568999999999998876655432 2 13556889
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC--Cch
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD--DSH 1110 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~--d~~ 1110 (1832)
|-+.++|.++....-.|+..-+|||++++-||||.+.+.|++.++|.|+..+.|.+|||||-.++..++.+.... |..
T Consensus 566 GY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~ 645 (1034)
T KOG4150|consen 566 GYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQY 645 (1034)
T ss_pred ccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhH
Confidence 999999999999999999999999999999999999999999999999999999999999998887666555443 444
Q ss_pred HHH
Q psy6409 1111 LFY 1113 (1832)
Q Consensus 1111 ~~~ 1113 (1832)
++.
T Consensus 646 Y~~ 648 (1034)
T KOG4150|consen 646 YMS 648 (1034)
T ss_pred hhc
Confidence 433
No 248
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.63 E-value=1.1e-13 Score=185.04 Aligned_cols=335 Identities=19% Similarity=0.250 Sum_probs=194.2
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
-|| +++|-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 466 79999999665544 567899999999999999999987532 256799999999999998
Q ss_pred -HHHHHHhcCCCCCeEEEEECCcchHH-----H------------------------------------------HHHh-
Q psy6409 1497 -EEETNKFGTPLGIRTVLVVGGLSREE-----Q------------------------------------------GFRL- 1527 (1832)
Q Consensus 1497 -~~~~~~~~~~~g~~v~~l~gg~~~~~-----~------------------------------------------~~~l- 1527 (1832)
.+.+..+...+++++..+.|+...-. + +..+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 57777777777887777776543100 0 0000
Q ss_pred -----------------------hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC-----C----hHHH
Q psy6409 1528 -----------------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-----F----EPDV 1575 (1832)
Q Consensus 1528 -----------------------~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g-----f----~~~l 1575 (1832)
...++|||+.-.-|...+.... .+...++|||||||++.+.. . ....
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~ 466 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFL 466 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHH
Confidence 1136788888776666553332 25678999999999875421 0 0000
Q ss_pred HHH---H----------------------------------------------------------HhCCCCC---CCCC-
Q psy6409 1576 QKI---L----------------------------------------------------------EYMPVTN---LKPD- 1590 (1832)
Q Consensus 1576 ~~I---l----------------------------------------------------------~~l~~~~---~~~~- 1590 (1832)
..+ + ..+.... +...
T Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~ 546 (820)
T PRK07246 467 QTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESE 546 (820)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 000 0 0000000 0000
Q ss_pred -----C-----chhhhHHHHHhhhccccCcceEEEEEccCC--hHHHHHHHHh-cCCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 1591 -----T-----EDAEDENKLLANYNSKKKYRQTVMFTATMP--PAVERLARSY-LRRPATVYIGSVGKPTERIEQIVYI- 1656 (1832)
Q Consensus 1591 -----~-----~~~~~~~~l~~~~~~~~~~~q~v~~SATl~--~~~~~~~~~~-l~~p~~v~i~~~~~~~~~i~q~~~~- 1656 (1832)
. ........+ ..+ ......+|++|||++ +... +...+ +.......+. ..... .+.+..
T Consensus 547 ~~~~~~~~~l~~~pl~v~~~-~~~--~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~ 618 (820)
T PRK07246 547 KQSEKRVTYLNSASKAFTHF-SQL--LPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVD 618 (820)
T ss_pred CCCCcceeEEEeeeCcHHHH-HHH--HhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeC
Confidence 0 000000000 000 012246889999995 2222 32222 1111111111 11110 111111
Q ss_pred --cc------hhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1657 --LS------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1657 --~~------~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
.+ ...-...+.+.+.. ...++++|+++|.+..+.++..|....+.+ ...|.-. .+..+++.|++++-
T Consensus 619 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 619 QDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 11 11222233332211 356899999999999999999997665555 4444222 25668999999988
Q ss_pred cEEEEcccccccCCCC--CCCEEEEeCCCC------------------------------CHHHHHHHhcccccCCC-cc
Q psy6409 1727 DILVATDVAGRGIDIK--DVSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGK-EG 1773 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip--~v~~VI~~d~P~------------------------------s~~~yiQRiGRaGR~g~-~G 1773 (1832)
.||++|+.+.+|||+| +...||...+|- -+..+.|-+||.=|... .|
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 9999999999999997 355566655541 23456799999999654 56
Q ss_pred EEEEEeeCC
Q psy6409 1774 LAVSFCTKD 1782 (1832)
Q Consensus 1774 ~ai~~~~~~ 1782 (1832)
. ++++++.
T Consensus 776 v-v~ilD~R 783 (820)
T PRK07246 776 A-VLILDRR 783 (820)
T ss_pred E-EEEECCc
Confidence 5 4444443
No 249
>KOG0920|consensus
Probab=99.62 E-value=2.6e-14 Score=184.59 Aligned_cols=312 Identities=21% Similarity=0.280 Sum_probs=210.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hc
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FG 1504 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~ 1504 (1832)
....+.+.+.++.+...++|.+.||+|||.-.---+|..... .+....+++-.|.|-=|.-++++... .+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---------~~~~~~IicTQPRRIsAIsvAeRVa~ER~ 244 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---------SGAACNIICTQPRRISAISVAERVAKERG 244 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---------cCCCCeEEecCCchHHHHHHHHHHHHHhc
Confidence 456677888888888999999999999998543334433211 12456699999988777766665543 35
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh-hcCCCh-HHHHHHHHhC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMGFE-PDVQKILEYM 1582 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l-l~~gf~-~~l~~Il~~l 1582 (1832)
...|-.|+.-++..+.. .....+++||.|.|+..+.. ...+..+..||+||+|.= ++..|- -.+..++
T Consensus 245 ~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL--- 314 (924)
T KOG0920|consen 245 ESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLL--- 314 (924)
T ss_pred cccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHh---
Confidence 55564444433332221 12467999999999999987 556889999999999931 111121 1111111
Q ss_pred CCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce------------
Q psy6409 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI------------ 1650 (1832)
Q Consensus 1583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i------------ 1650 (1832)
...+..++|+||||+.. + ....|+.....+.+.....+....
T Consensus 315 -----------------------~~~p~LkvILMSAT~da--e-~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~ 368 (924)
T KOG0920|consen 315 -----------------------PRNPDLKVILMSATLDA--E-LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYV 368 (924)
T ss_pred -----------------------hhCCCceEEEeeeecch--H-HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhccc
Confidence 12256789999999973 2 334555555555544322221100
Q ss_pred ----EEE------------EEEcchhhHHHHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc-------CCcEE
Q psy6409 1651 ----EQI------------VYILSEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL-------GYNAC 1703 (1832)
Q Consensus 1651 ----~q~------------~~~~~~~~k~~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~-------~~~v~ 1703 (1832)
.+. ............+.+++.. ...+.+|||.+.-.....++..|... .+-+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~il 448 (924)
T KOG0920|consen 369 SEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAIL 448 (924)
T ss_pred ccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEE
Confidence 000 0000111223333333332 34678999999999999999998642 25678
Q ss_pred EEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE--------eCCCC----------CHHHHHHHhcc
Q psy6409 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN--------YDMAK----------SIEDYTHRIGR 1765 (1832)
Q Consensus 1704 ~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~--------~d~P~----------s~~~yiQRiGR 1765 (1832)
.+|+.|+..+++.+...--.|.-+|++||++++..|-|++|-.||. ||.-. |-++-.||.||
T Consensus 449 plHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 449 PLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred eccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 8999999999999999999999999999999999999999999997 44432 45567899999
Q ss_pred cccCCCccEEEEEeeCCC
Q psy6409 1766 TGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1766 aGR~g~~G~ai~~~~~~d 1783 (1832)
|||. ..|.|+-+++...
T Consensus 529 AGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 529 AGRV-RPGICYHLYTRSR 545 (924)
T ss_pred ccCc-cCCeeEEeechhh
Confidence 9997 5899999999764
No 250
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.62 E-value=7.7e-14 Score=186.67 Aligned_cols=334 Identities=18% Similarity=0.225 Sum_probs=194.1
Q ss_pred cCCCCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.|| ++++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 466 68999998554443 467899999999999999999987532 256899999999999999
Q ss_pred -HHHHHHhcCCCCCeEEEEEcCCchH-----HH------------------------------------------HHHH-
Q psy6409 822 -EEETNKFGTPLGIRTVLVVGGLSRE-----EQ------------------------------------------GFRL- 852 (1832)
Q Consensus 822 -~~~~~~~~~~~~i~v~~~~Gg~~~~-----~~------------------------------------------~~~l- 852 (1832)
.+.+..+...+++++..+.|+.+.- ++ +..+
T Consensus 308 ~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~ 387 (820)
T PRK07246 308 MAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhh
Confidence 4677777777888888887765410 00 0000
Q ss_pred -----------------------hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCC--ChHH---HHHHH
Q psy6409 853 -----------------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG--FEPD---VQKIL 904 (1832)
Q Consensus 853 -----------------------~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~g--f~~~---i~~Il 904 (1832)
...++|||+.-..|...+.... .+..+++|||||||++.+.. +... +..++
T Consensus 388 ~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~ 466 (820)
T PRK07246 388 HDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFL 466 (820)
T ss_pred ccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHH
Confidence 0136788888887776554433 36778999999999976421 0000 00000
Q ss_pred HhC------------------------------C-----------------------------------CCC------CC
Q psy6409 905 EYM------------------------------P-----------------------------------VTN------LK 913 (1832)
Q Consensus 905 ~~l------------------------------~-----------------------------------~~~------~~ 913 (1832)
..+ . ... ..
T Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~ 546 (820)
T PRK07246 467 QTIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESE 546 (820)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 000 0 000 00
Q ss_pred C----CC--ch--hHHHHHHHHhhccccccceEEEEEecCC--hHHHHHHHHhc-CCCcEEEEcccCCCCcceEEEEEE-
Q psy6409 914 P----DT--ED--AEDENKLLANYNSKKKYRQTVMFTATMP--PAVERLARSYL-RRPATVYIGSVGKPTERIEQIVYI- 981 (1832)
Q Consensus 914 ~----~~--~~--~~~~~~ll~~~~~~~~~~q~v~~SATl~--~~v~~~~~~~l-~~p~~v~~~~~~~~~~~i~q~~~~- 981 (1832)
. .. .. ...... +..+ ......+|++||||+ +.. .+...+. .......+. .. .. -.+.++.
T Consensus 547 ~~~~~~~~~l~~~pl~v~~-~~~~--~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~--~~-~~-~~~~~~i~ 618 (820)
T PRK07246 547 KQSEKRVTYLNSASKAFTH-FSQL--LPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE--KD-KK-QDQLVVVD 618 (820)
T ss_pred CCCCcceeEEEeeeCcHHH-HHHH--HhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC--CC-hH-HccEEEeC
Confidence 0 00 00 000000 0000 012247899999995 222 2433222 111111111 00 00 0111111
Q ss_pred --cc------hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 982 --LS------EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 982 --~~------~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
+. ...-...+.+.+.. ..+++++||++|.+..+.+++.|....+.+ ...|.-. .+..+++.|+++..
T Consensus 619 ~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~ 695 (820)
T PRK07246 619 QDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ 695 (820)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC
Confidence 01 11222223222211 356789999999999999999997665555 4444222 25668999999988
Q ss_pred cEEEecccccccCCCcC--cCEEEEcCCCC------------------------------CHhHHHHHhcccccCCCC-c
Q psy6409 1052 DILVATDVAGRGIDIKD--VSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGKE-G 1098 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~--v~~VI~~d~p~------------------------------s~~~yvQr~GRaGR~g~~-G 1098 (1832)
.||++|+.+.+|||+|+ ...||...+|. -+..+.|-+||.=|...+ |
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999984 45556555542 133467888998887654 5
Q ss_pred EEEEEecC
Q psy6409 1099 LAVSFCTK 1106 (1832)
Q Consensus 1099 ~ai~~~~~ 1106 (1832)
. +.++..
T Consensus 776 v-v~ilD~ 782 (820)
T PRK07246 776 A-VLILDR 782 (820)
T ss_pred E-EEEECC
Confidence 4 444443
No 251
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=6.3e-15 Score=154.66 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccc
Q psy6409 1660 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~ 1737 (1832)
..|...+..++... ...++||||++...++.++..|...+.++..+||+++..+|..+++.|.+|...||++|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36777888888765 3789999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
|+|+|.+++||.++.|.+...|+|++||+||.|+.|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888764
No 252
>KOG1123|consensus
Probab=99.61 E-value=4.1e-15 Score=173.26 Aligned_cols=313 Identities=17% Similarity=0.230 Sum_probs=206.6
Q ss_pred CCCCcHHHHHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-..++|+|..++..+..+ |.-||+.|.|+|||++-+-++. .-...+||||.+-.-++|+...
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------------tikK~clvLcts~VSVeQWkqQ 364 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------------TIKKSCLVLCTSAVSVEQWKQQ 364 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------------eecccEEEEecCccCHHHHHHH
Confidence 367899999999999863 6789999999999997544332 2356799999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--------ccccCCceeEEEecchhhhcCCC
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGF 896 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--------~~~l~~~~~lViDEaH~l~d~gf 896 (1832)
|..++.--+-.++..+.+... ....++.|+|+|..++..--.+. .+.-..|.++|+||+|.+...-|
T Consensus 365 fk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MF 439 (776)
T KOG1123|consen 365 FKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMF 439 (776)
T ss_pred HHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHH
Confidence 999977666667777766542 23347899999987764221111 12345789999999998877667
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHH-HhcCCCcEE------------
Q psy6409 897 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATV------------ 963 (1832)
Q Consensus 897 ~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~-~~l~~p~~v------------ 963 (1832)
+..+.-+-+++. ++++||+-..-+++.. .|+-.|...
T Consensus 440 RRVlsiv~aHcK------------------------------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGh 489 (776)
T KOG1123|consen 440 RRVLSIVQAHCK------------------------------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGH 489 (776)
T ss_pred HHHHHHHHHHhh------------------------------ccceeEEeeccccccccceeecchhhhccHHHHHhCCc
Confidence 777766665553 4566665221111110 011111100
Q ss_pred --EEcccC-------------CCCcceEEEEEEcchhhHHHH---HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC
Q psy6409 964 --YIGSVG-------------KPTERIEQIVYILSEQDKRKK---LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025 (1832)
Q Consensus 964 --~~~~~~-------------~~~~~i~q~~~~~~~~~k~~~---L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~ 1025 (1832)
.+.... .....-.....++....|+.. |+..+.. .+.++|||..+.-.....|-.|
T Consensus 490 IA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl----- 563 (776)
T KOG1123|consen 490 IAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKL----- 563 (776)
T ss_pred eeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHc-----
Confidence 000000 000000111222233344443 3333332 5678999988865544444333
Q ss_pred cEEEEcCCCCHHHHHHHHHHHh-CCCCcEEEecccccccCCCcCcCEEEEcCCC-CCHhHHHHHhcccccCCC------C
Q psy6409 1026 NACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGK------E 1097 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~-~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p-~s~~~yvQr~GRaGR~g~------~ 1097 (1832)
+--.++|..+|.+|..|++.|+ +..++-++-.-|+...||+|..+++|+...- .|..+=.||.||..|+.+ .
T Consensus 564 ~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fn 643 (776)
T KOG1123|consen 564 GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFN 643 (776)
T ss_pred CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccc
Confidence 2347899999999999999998 4577888889999999999999999965432 377888999999999743 3
Q ss_pred cEEEEEecCCCchHHHHHH
Q psy6409 1098 GLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1098 G~ai~~~~~~d~~~~~~l~ 1116 (1832)
...+++++.+...++++-+
T Consensus 644 afFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 644 AFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred eeeeeeeecchHHHHhhhh
Confidence 5677888888766666544
No 253
>KOG1123|consensus
Probab=99.61 E-value=6.7e-15 Score=171.52 Aligned_cols=314 Identities=16% Similarity=0.201 Sum_probs=212.0
Q ss_pred CCCcHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQ-N--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~-g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
..++|||..++..++- | +.-||+.|+|+|||++-+-++. .-...+||||.+---+.|+...+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~---------------tikK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC---------------TIKKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee---------------eecccEEEEecCccCHHHHHHHH
Confidence 4789999999999883 3 6789999999999998654443 12567999999988899999888
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc--------cccccCCceeEEEccchhhhcCCCh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN--------RYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~--------~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
..+..--.-.++..+++.... ...++.|+|+|...+..--.+ ..+.-..++++|+||+|.+...-|+
T Consensus 366 k~wsti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFR 440 (776)
T KOG1123|consen 366 KQWSTIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFR 440 (776)
T ss_pred HhhcccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHH
Confidence 888654455566666654421 334788999997655322111 1123457899999999988777777
Q ss_pred HHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEcccC-------
Q psy6409 1573 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSVG------- 1644 (1832)
Q Consensus 1573 ~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~~------- 1644 (1832)
..+.-+-.++. +++|||+-...+.+.. .||-.|..+..+=.+
T Consensus 441 RVlsiv~aHcK------------------------------LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhI 490 (776)
T KOG1123|consen 441 RVLSIVQAHCK------------------------------LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHI 490 (776)
T ss_pred HHHHHHHHHhh------------------------------ccceeEEeeccccccccceeecchhhhccHHHHHhCCce
Confidence 77766655553 6777776433222211 111112111000000
Q ss_pred --------------------CCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1645 --------------------KPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1645 --------------------~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.....-......++...|.....-+++.+ .+.++|||..+.-.....|-.|. -
T Consensus 491 A~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----K 565 (776)
T KOG1123|consen 491 AKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----K 565 (776)
T ss_pred eEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----C
Confidence 00000011222333444544444444433 57799999999877777665553 3
Q ss_pred EEEcCCCCHHHHHHHHHHhh-CCCCcEEEEcccccccCCCCCCCEEEEeCCC-CCHHHHHHHhcccccCCC------ccE
Q psy6409 1703 CTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMA-KSIEDYTHRIGRTGRAGK------EGL 1774 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~-~g~~~VLVATdvl~~GIDip~v~~VI~~d~P-~s~~~yiQRiGRaGR~g~------~G~ 1774 (1832)
-++.|..++.+|..|++.|+ +..++-++-+.|....||+|+.+++|+..-- .|-.+=.||.||..|+.+ ...
T Consensus 566 pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnaf 645 (776)
T KOG1123|consen 566 PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAF 645 (776)
T ss_pred ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcccccee
Confidence 46899999999999999998 5678999999999999999999999987653 477888999999999632 356
Q ss_pred EEEEeeCCChhHHHHHHH
Q psy6409 1775 AVSFCTKDDSHLFYDLKQ 1792 (1832)
Q Consensus 1775 ai~~~~~~d~~~~~~l~~ 1792 (1832)
.+++++.+..++++.-+.
T Consensus 646 FYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 646 FYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred eeeeeecchHHHHhhhhh
Confidence 778888887788776654
No 254
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.59 E-value=1.2e-13 Score=177.37 Aligned_cols=299 Identities=20% Similarity=0.233 Sum_probs=189.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|+++|.-..-++..| -|+.+.||.|||+++.+|++... -.|..|-|++++..||.+-++.+
T Consensus 73 lG~-r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~a------------L~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNA------------LTGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHH------------hcCCceEEEeCCHHHHHHHHHHH
Confidence 566 4888888776555444 69999999999999999996432 13777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++.++++..+.... -.++|+++|..-+- |.|.... .....+.+.||||||.++ |...-
T Consensus 138 ~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 138 GQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 99999999999999998887654433 35899999987553 3443222 245668899999999754 21111
Q ss_pred ---------------HHHHHHHHhCCCC-----------------------------CCC--------------------
Q psy6409 898 ---------------PDVQKILEYMPVT-----------------------------NLK-------------------- 913 (1832)
Q Consensus 898 ---------------~~i~~Il~~l~~~-----------------------------~~~-------------------- 913 (1832)
..+..++..+... ++.
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 1111111111100 000
Q ss_pred ------------------------CCCchhHHHHHHHHhhcc------------------ccccceEEEEEecCChHHHH
Q psy6409 914 ------------------------PDTEDAEDENKLLANYNS------------------KKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 914 ------------------------~~~~~~~~~~~ll~~~~~------------------~~~~~q~v~~SATl~~~v~~ 951 (1832)
+.....+.+...+..-+. .+.+..+.++|.|.......
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 000000001111100000 12244678889998765555
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEE
Q psy6409 952 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1028 (1832)
Q Consensus 952 ~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~ 1028 (1832)
|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.||||-|.|.+..+.++..|...|++..
T Consensus 376 f~~iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 376 FEKIYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred HHHHhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 65555332 2222333333333321 3344556666666554332 3677999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHHHHHHHhCCCCcEEEecccccccCCC
Q psy6409 1029 TLHGGKG--QEQRELALNSLKGGSKDILVATDVAGRGIDI 1066 (1832)
Q Consensus 1029 ~lhg~~~--~~~R~~il~~F~~G~~~VLVaTdv~~rGlDi 1066 (1832)
++++.-. ..+-+.|-+.-+. -.|.|||++|+||.||
T Consensus 453 vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI 490 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDI 490 (870)
T ss_pred eeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCe
Confidence 9999642 2333333332233 3589999999999998
No 255
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.59 E-value=1.4e-14 Score=151.92 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccc
Q psy6409 985 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062 (1832)
Q Consensus 985 ~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~r 1062 (1832)
..|...+.+++... .+.++||||++...++.+++.|...+.++..+||+++..+|..+++.|.+|...||+||.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36777888887765 3779999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1063 GlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
|+|+|.+++||.+++|.+...|+|++||+||.|..|.+++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999988887754
No 256
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.56 E-value=7.7e-15 Score=139.49 Aligned_cols=78 Identities=45% Similarity=0.701 Sum_probs=75.7
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCC
Q psy6409 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095 (1832)
Q Consensus 1018 ~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g 1095 (1832)
++|+..++.+..+||++++.+|..+++.|.+|...|||||+++++|||+|++++||+|++|.+...|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 257
>KOG0926|consensus
Probab=99.56 E-value=1e-13 Score=169.56 Aligned_cols=314 Identities=21% Similarity=0.262 Sum_probs=196.7
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCCeE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIRT 1511 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~~v 1511 (1832)
.+.+|..+--+|||+.||||||. .+|-+.|=.- . . ......+..+=|..|.|--|.-+++... .++. +|..|
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAG--f-~-s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTT--QVPQFLYEAG--F-A-SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccc--cchHHHHHcc--c-C-CccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 34444455568999999999997 4555433111 0 0 0111234467788898876666554443 3333 44444
Q ss_pred EE--EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 1512 VL--VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589 (1832)
Q Consensus 1512 ~~--l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~ 1589 (1832)
.. -+.|.- .....|.++|.|.|+.-+.+. +.|..++.||+||||.=. -+.+.+--+++++-.
T Consensus 337 sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS--vnTDILiGmLSRiV~----- 400 (1172)
T KOG0926|consen 337 SYQIRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS--VNTDILIGMLSRIVP----- 400 (1172)
T ss_pred eEEEEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc--chHHHHHHHHHHHHH-----
Confidence 32 222221 224679999999998888764 458899999999999411 123444444544421
Q ss_pred CCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHH--HHhc-CCCcEEEEcccCCCCcceEEEEEE-cch---hhH
Q psy6409 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA--RSYL-RRPATVYIGSVGKPTERIEQIVYI-LSE---QDK 1662 (1832)
Q Consensus 1590 ~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~--~~~l-~~p~~v~i~~~~~~~~~i~q~~~~-~~~---~~k 1662 (1832)
...-+..-.....+..+|+||||+-- .++. +..+ ..|..+.+.....|. .-++.- ... .+.
T Consensus 401 -------LR~k~~ke~~~~kpLKLIIMSATLRV--sDFtenk~LFpi~pPlikVdARQfPV---sIHF~krT~~DYi~eA 468 (1172)
T KOG0926|consen 401 -------LRQKYYKEQCQIKPLKLIIMSATLRV--SDFTENKRLFPIPPPLIKVDARQFPV---SIHFNKRTPDDYIAEA 468 (1172)
T ss_pred -------HHHHHhhhhcccCceeEEEEeeeEEe--cccccCceecCCCCceeeeecccCce---EEEeccCCCchHHHHH
Confidence 11111111234457789999999842 2332 1122 222333333222221 111111 111 233
Q ss_pred HHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--------------------------------------------
Q psy6409 1663 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-------------------------------------------- 1698 (1832)
Q Consensus 1663 ~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-------------------------------------------- 1698 (1832)
....+.+-+..+.+-+|||+.....++.|+..|++.
T Consensus 469 frKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~ 548 (1172)
T KOG0926|consen 469 FRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYES 548 (1172)
T ss_pred HHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccc
Confidence 445566666778899999999999999999988641
Q ss_pred -------------------------------------------------------CCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1699 -------------------------------------------------------GYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1699 -------------------------------------------------------~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.+-|..+++-++.+.+..+++.--.
T Consensus 549 ~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~ 628 (1172)
T KOG0926|consen 549 DEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPK 628 (1172)
T ss_pred hhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCC
Confidence 0125567777888888888888888
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEE--------eCCCC----------CHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVIN--------YDMAK----------SIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~--------~d~P~----------s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
|.--++|||+|++..+.||+|..||. ||--. |-++--||+|||||.| .|+|+-+++..
T Consensus 629 g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 629 GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99889999999999999999999997 44333 3444569999999986 89999988764
No 258
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.56 E-value=9.7e-15 Score=138.80 Aligned_cols=78 Identities=45% Similarity=0.701 Sum_probs=75.5
Q ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCC
Q psy6409 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1693 ~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g 1770 (1832)
+.|+..++.+..+||++++.+|..+++.|.+|..+|||||+++++|||+|++++||++++|.|...|+|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999999986
No 259
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.54 E-value=6.7e-13 Score=170.50 Aligned_cols=300 Identities=22% Similarity=0.220 Sum_probs=191.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|++.|.-..-.+ ..+-|+.+.||.|||+++.+|++.... .|..|-|++++..||.+-+.++
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL------------~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL------------TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh------------cCCceEEEeCCHHHHHHHHHHH
Confidence 576 5888887765444 456799999999999999999964322 3777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++.++.+..+.... -.+||+.+|..-+- +.|+.+. .....+.+.||||||.++ |..
T Consensus 138 ~pvy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 138 GQIYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred HHHHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 99999999999999888887654333 35899999986553 4554432 235668999999999753 110
Q ss_pred -------------ChHHHHHHHHhCCCC----------------------------CCCCCCchhhh---HHHHHhh---
Q psy6409 1571 -------------FEPDVQKILEYMPVT----------------------------NLKPDTEDAED---ENKLLAN--- 1603 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~~----------------------------~~~~~~~~~~~---~~~l~~~--- 1603 (1832)
.......+...+... ...+.....+. ...+.+.
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 011111111111100 00000000000 0000000
Q ss_pred ------------------------------------------h---------------ccccCcceEEEEEccCChHHHH
Q psy6409 1604 ------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAVER 1626 (1832)
Q Consensus 1604 ------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~~~ 1626 (1832)
+ +.-+.+..+.+||.|....-.+
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E 375 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE 375 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH
Confidence 0 0011234577899998776666
Q ss_pred HHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEE
Q psy6409 1627 LARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNAC 1703 (1832)
Q Consensus 1627 ~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~ 1703 (1832)
+...|--+ +..-+...|....... ..+.....|..++++-+.. ..+.||||-|.|+...+.|+..|...|++..
T Consensus 376 f~~iY~l~---vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~ 452 (870)
T CHL00122 376 FEKIYNLE---VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQ 452 (870)
T ss_pred HHHHhCCC---EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccc
Confidence 66655433 2223444444433332 3344555666666655432 3678999999999999999999999999999
Q ss_pred EEcCCCC--HHHHHHHHHHhhCCCCcEEEEcccccccCCCC
Q psy6409 1704 TLHGGKG--QEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1704 ~lHg~ls--~~~R~~il~~F~~g~~~VLVATdvl~~GIDip 1742 (1832)
++++.-. ..+-+.|-+.=+. -.|.|||+.++||.||-
T Consensus 453 vLNAk~~~~~~EA~IIA~AG~~--G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 453 LLNAKPENVRRESEIVAQAGRK--GSITIATNMAGRGTDII 491 (870)
T ss_pred eeeCCCccchhHHHHHHhcCCC--CcEEEeccccCCCcCee
Confidence 9998632 3344433333233 35899999999999974
No 260
>KOG0385|consensus
Probab=99.53 E-value=1.2e-12 Score=160.64 Aligned_cols=339 Identities=23% Similarity=0.291 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+++||.+.+.++. .|-|.|+.-.-|-|||+-. +++|.|+.... ...|| -||+||.-.| ..+..++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-------~~~GP-fLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-------GIPGP-FLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------CCCCC-eEEEeeHhhH-HHHHHHH
Confidence 78999999999886 5778999999999999852 34444443211 12344 7899998776 5588889
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH---HhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~---~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~ 1577 (1832)
++|+. ++++++++|+........ ......+|+|+|.+..+.- ...+.--.+.|+||||||++-... ..+..
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 99875 577899999874332211 1223579999999876533 233344567999999999874431 12222
Q ss_pred HHHhCCCCC----------------------CCCCCchh-----------------hhHH--------HHHhhhc-----
Q psy6409 1578 ILEYMPVTN----------------------LKPDTEDA-----------------EDEN--------KLLANYN----- 1605 (1832)
Q Consensus 1578 Il~~l~~~~----------------------~~~~~~~~-----------------~~~~--------~l~~~~~----- 1605 (1832)
++..+...+ +.|+.... .... .++.+..
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 222221111 01111000 0000 0111100
Q ss_pred cccCcceEEEEEccCChHH--------------------------HH---HHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 1606 SKKKYRQTVMFTATMPPAV--------------------------ER---LARSYLRRPATVYIGSVGKPTERIEQIVYI 1656 (1832)
Q Consensus 1606 ~~~~~~q~v~~SATl~~~~--------------------------~~---~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~ 1656 (1832)
+..+..-+.+ =..|+..- .+ -+++..+.|..+.....+.+....++.+
T Consensus 391 sLppKkE~~i-yvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv-- 467 (971)
T KOG0385|consen 391 SLPPKKELII-YVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLV-- 467 (971)
T ss_pred cCCCcceeeE-eccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHH--
Confidence 0111111111 11111110 01 1233344554443322222222223332
Q ss_pred cchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC---CcEEEE
Q psy6409 1657 LSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS---KDILVA 1731 (1832)
Q Consensus 1657 ~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~---~~VLVA 1731 (1832)
....|...|-.+|.. ..+++||||..-....+.|-.++.-.+|...-+.|+++.++|...++.|.... .-.|++
T Consensus 468 -~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLS 546 (971)
T KOG0385|consen 468 -TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLS 546 (971)
T ss_pred -hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEe
Confidence 233454444444443 35789999999988888888888888999999999999999999999997543 446889
Q ss_pred cccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC
Q psy6409 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD 1783 (1832)
Q Consensus 1732 Tdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d 1783 (1832)
|.+.+.|||+-..++||.||--+++..=+|-+-||-|-|+... ++-|++++.
T Consensus 547 TRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 547 TRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred ccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 9999999999999999999999999999999999999997654 555577763
No 261
>KOG0953|consensus
Probab=99.53 E-value=1.3e-13 Score=163.83 Aligned_cols=277 Identities=23% Similarity=0.264 Sum_probs=179.8
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
++-+|||.||||.-++ +++. .....+|--|.|-||.++++.+... |+.+-.++|......
T Consensus 194 i~H~GPTNSGKTy~AL----qrl~------------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRAL----QRLK------------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred EEEeCCCCCchhHHHH----HHHh------------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 6778999999998654 3321 2445789999999999999999886 566666776544322
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
... ...++.+-+|.++.. .-..+++.||||+..|-|..++-.+..-+--+. +
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------------------A 305 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------------------A 305 (700)
T ss_pred CCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------------------h
Confidence 211 123667778877651 234679999999999988776655444322111 0
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEE
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIF 1006 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p-~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVF 1006 (1832)
....+.+= +.+-.+.+..+... ..+.+..... +..-.-.+.++.-+....++.+||
T Consensus 306 ------dEiHLCGe-----psvldlV~~i~k~TGd~vev~~YeR-----------l~pL~v~~~~~~sl~nlk~GDCvV- 362 (700)
T KOG0953|consen 306 ------DEIHLCGE-----PSVLDLVRKILKMTGDDVEVREYER-----------LSPLVVEETALGSLSNLKPGDCVV- 362 (700)
T ss_pred ------hhhhccCC-----chHHHHHHHHHhhcCCeeEEEeecc-----------cCcceehhhhhhhhccCCCCCeEE-
Confidence 01111111 12333444433211 1111111111 111111113334444445555544
Q ss_pred EcccchHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHhC--CCCcEEEecccccccCCCcCcCEEEEcCCC-----
Q psy6409 1007 VNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMA----- 1078 (1832)
Q Consensus 1007 v~s~~~~~~l~~~L~~~g~~-v~~lhg~~~~~~R~~il~~F~~--G~~~VLVaTdv~~rGlDip~v~~VI~~d~p----- 1078 (1832)
|-+++.+-.+...+.+.|.. +++++|+++++.|..--..|.+ ++++||||||+.++|+|+ +|+-||.|++-
T Consensus 363 ~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 363 AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcc
Confidence 33777888888889888766 9999999999999999999987 999999999999999999 78999988773
Q ss_pred ----CCHhHHHHHhcccccCCCC---cEEEEEecCCCchHHHHHHHHHh
Q psy6409 1079 ----KSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1079 ----~s~~~yvQr~GRaGR~g~~---G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.+..+..|.+|||||.|.. |.+.+|..++ +..|...++
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD----L~~L~~~l~ 486 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED----LKLLKRILK 486 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEeeHhh----HHHHHHHHh
Confidence 4678899999999998753 7777766543 445555444
No 262
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.53 E-value=3.6e-12 Score=163.10 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC----CCCcEEEecccccccC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG----GSKDILVATDVAGRGI 1064 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~----G~~~VLVaTdv~~rGl 1064 (1832)
..+..++. ...+.++|.+.|....+.+++.|...---...+.|..+ .+..+++.|+. |.-.||++|+.+.+||
T Consensus 460 ~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 34444444 34568999999999999999999653222344555443 35667888886 5789999999999999
Q ss_pred CC----------cCcCEEEEcCCCC
Q psy6409 1065 DI----------KDVSMVINYDMAK 1079 (1832)
Q Consensus 1065 Di----------p~v~~VI~~d~p~ 1079 (1832)
|+ +.+++||...+|.
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCC
Confidence 99 3488999877763
No 263
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.51 E-value=1.5e-11 Score=157.53 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHhhC----CCCcEEEEcccccccCC
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKG----GSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il~~F~~----g~~~VLVATdvl~~GID 1740 (1832)
+..++. ...+.++|.+.|....+.++..|... .+. ..+.|..+ .+...++.|+. |.-.||++|+.+.+|||
T Consensus 462 ~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 462 TAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 344444 34568999999999999999998653 333 34455432 35668888887 47899999999999999
Q ss_pred C----------CCCCEEEEeCCCC-------------------------CHHHHHHHhcccccCCC---ccEEEEEeeC
Q psy6409 1741 I----------KDVSMVINYDMAK-------------------------SIEDYTHRIGRTGRAGK---EGLAVSFCTK 1781 (1832)
Q Consensus 1741 i----------p~v~~VI~~d~P~-------------------------s~~~yiQRiGRaGR~g~---~G~ai~~~~~ 1781 (1832)
+ ..+++||...+|- .+..+.|-+||-=|... .|..+++-..
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 9 2488999877662 13346788999999644 4544444333
No 264
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.5e-12 Score=164.60 Aligned_cols=299 Identities=21% Similarity=0.266 Sum_probs=192.2
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|. .|+++|.-.--++..| -|+.+.||-|||+++.+|++... -.|..|-||.++--||..-++.+
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnA------------L~GkgVhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNA------------LTGKGVHVVTVNDYLARRDAEWM 146 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHh------------hcCCCeEEEeCCHHHHHhHHHHH
Confidence 454 6888888777666666 48999999999999999998543 24777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-----HHHHHc--cccccCCceeEEEecchhhh-cCCCh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-----IDVLEN--RYLVLNQCTYIVLDEADRMI-DMGFE 897 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-----~d~l~~--~~~~l~~~~~lViDEaH~l~-d~gf~ 897 (1832)
..+...+|+.|+++.++++..+.. ..-.|+|+++|+..| -|.+.. .......+.|.||||||.++ |...-
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArT 224 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEART 224 (939)
T ss_pred HHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCC
Confidence 999999999999999888765543 334799999999887 333321 12345678999999999754 22111
Q ss_pred H---------------HHHHHHHhCCC------C-----------------------------CCCCCCch---------
Q psy6409 898 P---------------DVQKILEYMPV------T-----------------------------NLKPDTED--------- 918 (1832)
Q Consensus 898 ~---------------~i~~Il~~l~~------~-----------------------------~~~~~~~~--------- 918 (1832)
| ....+...+.. . ++. +..+
T Consensus 225 PLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy-~~~~~~~~~i~~A 303 (939)
T PRK12902 225 PLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLF-DPQDPWAHYIFNA 303 (939)
T ss_pred cccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhc-CcccHHHHHHHHH
Confidence 1 11112211111 0 000 0000
Q ss_pred ------------------------------------hHHHHHHHHhhc------------------cccccceEEEEEec
Q psy6409 919 ------------------------------------AEDENKLLANYN------------------SKKKYRQTVMFTAT 944 (1832)
Q Consensus 919 ------------------------------------~~~~~~ll~~~~------------------~~~~~~q~v~~SAT 944 (1832)
.+.+...+..-+ -.+.+..+.++|+|
T Consensus 304 L~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGT 383 (939)
T PRK12902 304 LKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGT 383 (939)
T ss_pred HHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 000000000000 01234567788889
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
.......|...|--+ +..-+...|......- ..+.....|...+.+-+.. ..+.||||-+.|.+..+.++..|.
T Consensus 384 a~te~~Ef~~iY~l~---Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~ 460 (939)
T PRK12902 384 AKTEEVEFEKTYKLE---VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ 460 (939)
T ss_pred CHHHHHHHHHHhCCc---EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH
Confidence 866666666665432 2222233333322221 2344556777777655443 367899999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHH-HHH-HHHhCCCCcEEEecccccccCCCc
Q psy6409 1022 KLGYNACTLHGGKGQEQRE-LAL-NSLKGGSKDILVATDVAGRGIDIK 1067 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~-~il-~~F~~G~~~VLVaTdv~~rGlDip 1067 (1832)
..|++..++++.-...+++ .|+ +.-+.| .|-|||++|+||-||.
T Consensus 461 ~~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 461 EQGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred HcCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 9999999999963332333 233 322333 5899999999998873
No 265
>KOG0925|consensus
Probab=99.47 E-value=2.5e-12 Score=150.34 Aligned_cols=327 Identities=18% Similarity=0.248 Sum_probs=193.5
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+..|+..+.++...+.|++..--.-..++...+..+.++.-+++++.||||||.- +|-...-...+ ...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~---------~~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELS---------HLT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHh---------hcc
Confidence 5567777788888888776433223334444555556677899999999999963 33322111111 124
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
.|.+..|.|--|.+++..... .+++....-+|..-+.+.... .+.-+-.+|.+.|+.-..+. -.+..+++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVad---EMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~-p~l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVAD---EMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD-PLLGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHHH---HhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC-cccccccEEEec
Confidence 588899999888886655443 223322222222221111000 00001124444443332222 247889999999
Q ss_pred cchhh-hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1562 EADRM-IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1562 EaH~l-l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
|||.= +. .+.+. .++......+....+|.+|||+-. ...+.|+.++..+.+
T Consensus 167 eahERtlA---TDiLm----------------------Gllk~v~~~rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~v 218 (699)
T KOG0925|consen 167 EAHERTLA---TDILM----------------------GLLKEVVRNRPDLKLVVMSATLDA---EKFQRYFGNAPLLAV 218 (699)
T ss_pred hhhhhhHH---HHHHH----------------------HHHHHHHhhCCCceEEEeecccch---HHHHHHhCCCCeeec
Confidence 99931 10 11111 122222223356789999999843 234556666655555
Q ss_pred cccCCCCcceEEEEEEcchhhHH----HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH----c-----CCcEEEEcC
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKR----KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK----L-----GYNACTLHG 1707 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~----~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~----~-----~~~v~~lHg 1707 (1832)
.. .. .++-++..-.+.+.. ..++++......+-+|||....+..+..++.+.. + .+.|..+|
T Consensus 219 pg-~~---PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy- 293 (699)
T KOG0925|consen 219 PG-TH---PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY- 293 (699)
T ss_pred CC-CC---ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC-
Confidence 43 22 223333333333333 3344444444678899999998887777776653 2 35677777
Q ss_pred CCCHHHHHHHHHHhh---CC--CCcEEEEcccccccCCCCCCCEEEEeCC------------------CCCHHHHHHHhc
Q psy6409 1708 GKGQEQRELALNSLK---GG--SKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIEDYTHRIG 1764 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~---~g--~~~VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~~yiQRiG 1764 (1832)
+.++..+++-.- +| .-+|+|+|++++..+-|+.|.+||.-++ |-|-.+-.||.|
T Consensus 294 ---P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~g 370 (699)
T KOG0925|consen 294 ---PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 370 (699)
T ss_pred ---chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhh
Confidence 444444443332 12 2369999999999999999999997443 668889999999
Q ss_pred ccccCCCccEEEEEeeCC
Q psy6409 1765 RTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1765 RaGR~g~~G~ai~~~~~~ 1782 (1832)
||||. ..|.|+-++++.
T Consensus 371 ragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 371 RAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hccCC-CCCceEEeecHH
Confidence 99996 689999999975
No 266
>COG4889 Predicted helicase [General function prediction only]
Probab=99.47 E-value=7.6e-14 Score=171.16 Aligned_cols=313 Identities=19% Similarity=0.184 Sum_probs=183.0
Q ss_pred CCCCCcHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNR----DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~----dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
.-..|+|+|++|+..+++|- --=+++.+|+|||+.++-.+- .+ ...++|+|||+..|..|..
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisE-al-------------a~~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISE-AL-------------AAARILFLVPSISLLSQTL 223 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHH-HH-------------hhhheEeecchHHHHHHHH
Confidence 44689999999999998651 133456789999998754332 11 2367999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHH-------------------H------HHhhcCCcEEEeCHHHHHHHHHcccccc
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQ-------------------G------FRLRLGCEIVIATPGRLIDVLENRYLVL 1552 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~-------------------~------~~l~~~~~IiVaTP~rl~~~l~~~~~~l 1552 (1832)
++|... +.+.++...++++...... . ..-..+--||++|.+.+..+-.....-+
T Consensus 224 rew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 224 REWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 998875 3456666655554321100 0 0011234688899988877766666778
Q ss_pred CCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH-------
Q psy6409 1553 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE------- 1625 (1832)
Q Consensus 1553 ~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~------- 1625 (1832)
..+++||.||||+..+......=..-+.++. + .+.-+....+.+|||+.-.-+
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vH-------s-------------~~niKa~kRlYmTATPkiy~eS~K~kAk 362 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVH-------S-------------DQNIKAAKRLYMTATPKIYSESSKAKAK 362 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeec-------C-------------cchhHHHHhhhcccCchhhchhhhhhhh
Confidence 8999999999998654221100000000000 0 000011123344555321100
Q ss_pred --------------------------HHHHHhcCCCcEEEEcc-cCCCCcceEEEEEE------cchhhHHHHHHHHHH-
Q psy6409 1626 --------------------------RLARSYLRRPATVYIGS-VGKPTERIEQIVYI------LSEQDKRKKLMEVLN- 1671 (1832)
Q Consensus 1626 --------------------------~~~~~~l~~p~~v~i~~-~~~~~~~i~q~~~~------~~~~~k~~~l~~~l~- 1671 (1832)
...+..|.+-..+.... .......+.....- .....+..-...-|.
T Consensus 363 d~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlak 442 (1518)
T COG4889 363 DHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAK 442 (1518)
T ss_pred hccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhh
Confidence 01111222211111100 00000000000000 000011111111111
Q ss_pred hC--------------CCCcEEEEECchhHHHHHHHHHHH-------------cCCcEEE--EcCCCCHHHHHHHHHH--
Q psy6409 1672 RG--------------VKKPVIIFVNQKKGADVLAKGLEK-------------LGYNACT--LHGGKGQEQRELALNS-- 1720 (1832)
Q Consensus 1672 ~~--------------~~~~vIVFv~s~~~a~~l~~~L~~-------------~~~~v~~--lHg~ls~~~R~~il~~-- 1720 (1832)
+. +-.+.|-||.++++...++..|.. .++.+.+ ..|.|...+|...+..
T Consensus 443 r~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 443 RNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred hccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccC
Confidence 00 113579999999998888877643 2444444 4588999888655543
Q ss_pred -hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1721 -LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1721 -F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
|...+++||.....|++|||+|..+.||.+++-.+.-+.+|-+||+.|.
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999993
No 267
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1e-11 Score=159.19 Aligned_cols=300 Identities=22% Similarity=0.262 Sum_probs=192.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-.--++.. .-|+-+.||.|||+++.+|++...+ .|..|-||.++--||..=+.++
T Consensus 82 lG~-r~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL------------~GkgVhVVTvNdYLA~RDae~m 146 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNAL------------TGKGVHVVTVNDYLARRDAEWM 146 (939)
T ss_pred hCC-CcchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhh------------cCCCeEEEeCCHHHHHhHHHHH
Confidence 565 788888776655544 4599999999999999999975432 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cCC--
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG-- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~g-- 1570 (1832)
..+...+|+.|.++.++.++.+.. ..-.|||+++|+..| .+.|+.+ ......+.+.||||||.++ |..
T Consensus 147 ~~vy~~LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArT 224 (939)
T PRK12902 147 GQVHRFLGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEART 224 (939)
T ss_pred HHHHHHhCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCC
Confidence 999999999999998887766543 334699999999887 2333322 2345678999999999753 211
Q ss_pred -------------ChHHHHHHHHhCCC------C-CC---------------------------CCCCch--h-hhHHHH
Q psy6409 1571 -------------FEPDVQKILEYMPV------T-NL---------------------------KPDTED--A-EDENKL 1600 (1832)
Q Consensus 1571 -------------f~~~l~~Il~~l~~------~-~~---------------------------~~~~~~--~-~~~~~l 1600 (1832)
.......+...+.. . .+ ..+... . .....+
T Consensus 225 PLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL 304 (939)
T PRK12902 225 PLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNAL 304 (939)
T ss_pred cccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHH
Confidence 11111112221111 0 00 000000 0 000000
Q ss_pred Hhh---------------------------------------------h---------------ccccCcceEEEEEccC
Q psy6409 1601 LAN---------------------------------------------Y---------------NSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1601 ~~~---------------------------------------------~---------------~~~~~~~q~v~~SATl 1620 (1832)
.+. + +.-+.+..+.+||.|.
T Consensus 305 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa 384 (939)
T PRK12902 305 KAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTA 384 (939)
T ss_pred HHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCC
Confidence 000 0 0011234667899998
Q ss_pred ChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHH
Q psy6409 1621 PPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEK 1697 (1832)
Q Consensus 1621 ~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~ 1697 (1832)
.....++...|--+ +...+...|....... ..+.....|..++++-+.. ..+.||||-|.|+...+.++..|..
T Consensus 385 ~te~~Ef~~iY~l~---Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~ 461 (939)
T PRK12902 385 KTEEVEFEKTYKLE---VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQE 461 (939)
T ss_pred HHHHHHHHHHhCCc---EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHH
Confidence 77666676666433 2222334444333222 3344556777777765543 3678999999999999999999999
Q ss_pred cCCcEEEEcCC-CC-HHHHHHHHHHhhCCCCcEEEEcccccccCCCC
Q psy6409 1698 LGYNACTLHGG-KG-QEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1698 ~~~~v~~lHg~-ls-~~~R~~il~~F~~g~~~VLVATdvl~~GIDip 1742 (1832)
.|++..++++. .. ..+-+.|-+.=+.| .|-|||+.++||-||.
T Consensus 462 ~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 462 QGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred cCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 99999999986 23 33333333333333 4899999999999974
No 268
>KOG0385|consensus
Probab=99.46 E-value=8e-12 Score=153.55 Aligned_cols=339 Identities=22% Similarity=0.295 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.+++||.+.+.-+. .|-|.|+.-+-|-|||+. .|.+|.|+... ....|| -||+||--.|.. +..+|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~-------~~~~GP-fLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGR-------KGIPGP-FLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHh-------cCCCCC-eEEEeeHhhHHH-HHHHH
Confidence 67888888776654 367899999999999986 34444454321 122455 688999887755 78899
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHH---HHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGF---RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~---~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~ 902 (1832)
++|+. ++++++++|+........ ......+|+|+|.++.+.- ...+.--.|+||||||||++-+.. ..+..
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~ 310 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSK 310 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHH
Confidence 99975 578889999864222111 1123589999999988643 333344568999999999965432 11112
Q ss_pred HHHhCCCCC----------------------CCCCC--------------------chhHHHH---------HHHHhhcc
Q psy6409 903 ILEYMPVTN----------------------LKPDT--------------------EDAEDEN---------KLLANYNS 931 (1832)
Q Consensus 903 Il~~l~~~~----------------------~~~~~--------------------~~~~~~~---------~ll~~~~~ 931 (1832)
++..+...+ +.|+- .....+. ++-..+..
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 222211100 01110 0000010 11111111
Q ss_pred ccccceEEEEEecCChHHHHH-----------------------------HHHhcCCCcEEEEcccCCCCcceEEEEEEc
Q psy6409 932 KKKYRQTVMFTATMPPAVERL-----------------------------ARSYLRRPATVYIGSVGKPTERIEQIVYIL 982 (1832)
Q Consensus 932 ~~~~~q~v~~SATl~~~v~~~-----------------------------~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~ 982 (1832)
.-++..-+.+=.+|..--.++ .+...+.|..+.-...+.+...-++ .+
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh---Lv 467 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH---LV 467 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH---HH
Confidence 111111111112221111111 1222334433322111122222222 23
Q ss_pred chhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC---CCcEEEec
Q psy6409 983 SEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG---SKDILVAT 1057 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G---~~~VLVaT 1057 (1832)
....|+..|-.+|.. ..+.+||||..--..-+.|-.+....+|..+-+.|.++.++|...++.|... .+-.|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 334555555555543 3677999999888888888888888999999999999999999999999754 34579999
Q ss_pred ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1058 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1058 dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
-+.+-|||+-..++||.||--.++..=+|-.-||-|-|+. =.++.|+|.+
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999998876 4677888877
No 269
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.46 E-value=1.8e-11 Score=167.23 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=79.4
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCC--CCEEEE
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD--VSMVIN 1749 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~--v~~VI~ 1749 (1832)
..+++|||++|.+..+.++..|..... +..++.-+++...|..+++.|+.++-.||++|..+.+|||+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567899999999999999999875422 1222333444456899999999998899999999999999996 478887
Q ss_pred eCCCC------------------------------CHHHHHHHhcccccCCCc-cEEEEEeeCC
Q psy6409 1750 YDMAK------------------------------SIEDYTHRIGRTGRAGKE-GLAVSFCTKD 1782 (1832)
Q Consensus 1750 ~d~P~------------------------------s~~~yiQRiGRaGR~g~~-G~ai~~~~~~ 1782 (1832)
..+|- -+..+.|-+||.=|..+. |. +++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~-v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT-VFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE-EEEecCc
Confidence 66552 233457889999997543 53 4444443
No 270
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.43 E-value=2.2e-12 Score=136.36 Aligned_cols=121 Identities=43% Similarity=0.647 Sum_probs=97.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+++++.+|||+|||.+++.++...... ....+++|++|++.|+.|+...+...... ++.+..+.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcch
Confidence 468999999999999998888765422 24578999999999999999999988665 6788888888776
Q ss_pred HHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 846 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 846 ~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
...........+|+++|++.+...+.........+++|||||+|.+....+.
T Consensus 70 ~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 70 KQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred hHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchH
Confidence 6655555668999999999998877766555678899999999988765433
No 271
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.42 E-value=1.6e-11 Score=167.81 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc--CEEE
Q psy6409 998 GVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV--SMVI 1073 (1832)
Q Consensus 998 ~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v--~~VI 1073 (1832)
..++++|||++|....+.++..|..... ....+.=+++...|..+++.|+.+.-.||++|..+.+|||+|+- .+||
T Consensus 750 ~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 750 ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 3567899999999999999999975422 12222224444568899999999988999999999999999975 6888
Q ss_pred EcCCCC------------------------------CHhHHHHHhcccccCCCCcEEEEEecC
Q psy6409 1074 NYDMAK------------------------------SIEDYTHRIGRTGRAGKEGLAVSFCTK 1106 (1832)
Q Consensus 1074 ~~d~p~------------------------------s~~~yvQr~GRaGR~g~~G~ai~~~~~ 1106 (1832)
...+|. -+..+.|-+||.=|...+--+++++..
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~ 892 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDR 892 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecC
Confidence 766653 123457888888887654223444433
No 272
>KOG0953|consensus
Probab=99.42 E-value=2.7e-12 Score=152.94 Aligned_cols=267 Identities=22% Similarity=0.251 Sum_probs=171.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
++-++||.||||.-+ |+.+. .....+|--|.|-||.++++.+.+. |+.+-.++|.--...
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~------------~aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLK------------SAKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHh------------hhccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 667899999999865 33332 2445899999999999999999886 566666777543221
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHh
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~ 1602 (1832)
... ...+..+-||.++.. .-..+.+.||||+++|-+...+-.+.+-+--+..
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~A------------------ 305 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAA------------------ 305 (700)
T ss_pred CCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhh------------------
Confidence 110 112556667765331 2345789999999988877666555443322210
Q ss_pred hhccccCcceEEEEEccCChHHHHHHHHhcCCC-cEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEE
Q psy6409 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIF 1681 (1832)
Q Consensus 1603 ~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p-~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVF 1681 (1832)
....+.+ .+.+..+.+..+... ..+.+.. |..+....-...+..-+.....+-+||
T Consensus 306 ------dEiHLCG-----epsvldlV~~i~k~TGd~vev~~-----------YeRl~pL~v~~~~~~sl~nlk~GDCvV- 362 (700)
T KOG0953|consen 306 ------DEIHLCG-----EPSVLDLVRKILKMTGDDVEVRE-----------YERLSPLVVEETALGSLSNLKPGDCVV- 362 (700)
T ss_pred ------hhhhccC-----CchHHHHHHHHHhhcCCeeEEEe-----------ecccCcceehhhhhhhhccCCCCCeEE-
Confidence 0011111 123344444443211 1122111 111111111123333444444444544
Q ss_pred ECchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeCCC-----
Q psy6409 1682 VNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYDMA----- 1753 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~~-v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d~P----- 1753 (1832)
|=|++..-.+...+...|.. +++++|+++++.|..--..|.+ ++++||||||+.+.|+|+ ++.-||.|++-
T Consensus 363 ~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 363 AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcc
Confidence 34667777788888877765 9999999999999999999987 999999999999999999 69999987753
Q ss_pred ----CCHHHHHHHhcccccCCC---ccEEEEEeeC
Q psy6409 1754 ----KSIEDYTHRIGRTGRAGK---EGLAVSFCTK 1781 (1832)
Q Consensus 1754 ----~s~~~yiQRiGRaGR~g~---~G~ai~~~~~ 1781 (1832)
-+..+..|.+|||||+|. .|.+.+|-.+
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 368899999999999874 4777777654
No 273
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.41 E-value=4.5e-12 Score=133.96 Aligned_cols=121 Identities=43% Similarity=0.647 Sum_probs=97.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+++++.+|||+|||.+++.++...... ....+++|++|++.|+.|+...+...... +..+..+.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSI 69 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcch
Confidence 478999999999999998888765432 24578999999999999999999887654 6777778887776
Q ss_pred HHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCCh
Q psy6409 1521 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 1572 (1832)
Q Consensus 1521 ~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~ 1572 (1832)
.........+.+|+++|++.+...+.........+++|||||+|.+....+.
T Consensus 70 ~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 70 KQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred hHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchH
Confidence 6655555668999999999998888766556678899999999988765443
No 274
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=2.4e-12 Score=123.04 Aligned_cols=81 Identities=49% Similarity=0.763 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC
Q psy6409 1690 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1690 ~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~ 1769 (1832)
.++..|...++.+..+||++++.+|..+++.|.+|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy6409 1770 G 1770 (1832)
Q Consensus 1770 g 1770 (1832)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 275
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.35 E-value=3.3e-11 Score=156.62 Aligned_cols=318 Identities=22% Similarity=0.223 Sum_probs=185.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHc--------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEE
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQ--------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~--------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lil 811 (1832)
.+.|.+.--...+.+|-.|+..+.. |--+|-.|.||||||++=+-.|.. +.....|.+..|-
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya----------Lsd~~~g~RfsiA 467 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA----------LRDDKQGARFAIA 467 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH----------hCCCCCCceEEEE
Confidence 3444444444567789999988875 223777899999999975543321 1234567788888
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH------------------------------------------
Q psy6409 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG------------------------------------------ 849 (1832)
Q Consensus 812 aPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~------------------------------------------ 849 (1832)
.-.|.|-.|+-..+++.+.--.-..++++||....+-.
T Consensus 468 LGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l 547 (1110)
T TIGR02562 468 LGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIEL 547 (1110)
T ss_pred ccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhh
Confidence 88888888888888876543344566666664322100
Q ss_pred -HHHh--------cCCceeecCHHHHHHHHH--cc-ccccC----CceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 850 -FRLR--------LGCEIVIATPGRLIDVLE--NR-YLVLN----QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 850 -~~l~--------~~~~IlV~TP~rL~d~l~--~~-~~~l~----~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
..+. -...|+|||+..++-... +. ...+. .-+.|||||+| .|.+....++.++-
T Consensus 548 ~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVH-----aYD~~~~~~L~rlL----- 617 (1110)
T TIGR02562 548 LGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPD-----DYEPEDLPALLRLV----- 617 (1110)
T ss_pred hhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCc-----cCCHHHHHHHHHHH-----
Confidence 0000 026799999998886662 21 11111 12689999999 33333333322220
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH-HHHh----------cCC---CcEE---EEcccCC------
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL-ARSY----------LRR---PATV---YIGSVGK------ 970 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~-~~~~----------l~~---p~~v---~~~~~~~------ 970 (1832)
.++.. -...++++|||||+.+... ...| ... |..+ .++....
T Consensus 618 ----------~w~~~-----lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~ 682 (1110)
T TIGR02562 618 ----------QLAGL-----LGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCN 682 (1110)
T ss_pred ----------HHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhc
Confidence 01111 1256899999999987542 2222 122 2111 1111100
Q ss_pred -----------------------CCcceEEEEEEcchh-----hHHHH--------HHHHHHcC----C--CCC---EEE
Q psy6409 971 -----------------------PTERIEQIVYILSEQ-----DKRKK--------LMEVLNRG----V--KKP---VII 1005 (1832)
Q Consensus 971 -----------------------~~~~i~q~~~~~~~~-----~k~~~--------L~~~l~~~----~--~~~---vIV 1005 (1832)
+..... .+..+... ..... ++.++..+ + +++ .+|
T Consensus 683 ~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a-~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGli 761 (1110)
T TIGR02562 683 QKSEFIQRHQDFLRDRAVQLAKKPVRRLA-ELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLI 761 (1110)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcccceE-EEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEE
Confidence 000011 11111111 11112 22222221 1 112 467
Q ss_pred EEcccchHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHH----------------------hC----CCCcE
Q psy6409 1006 FVNQKKGADVLAKGLEKL------GYNACTLHGGKGQEQRELALNSL----------------------KG----GSKDI 1053 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~------g~~v~~lhg~~~~~~R~~il~~F----------------------~~----G~~~V 1053 (1832)
=+++++.+-.++..|... .+.++++|+..+...|..+++.. .+ +...|
T Consensus 762 R~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i 841 (1110)
T TIGR02562 762 RVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFI 841 (1110)
T ss_pred EEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeE
Confidence 778888888888888654 24578899999888887766543 12 46789
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
+|||.+.+.|+|+ +.+++|- -|.++.+.+|++||+.|.|.
T Consensus 842 ~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 842 VLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 9999999999998 4665543 36789999999999999775
No 276
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=2.7e-12 Score=122.67 Aligned_cols=81 Identities=49% Similarity=0.763 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC
Q psy6409 1015 VLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094 (1832)
Q Consensus 1015 ~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~ 1094 (1832)
.+++.|...++.+..+||+++..+|..+++.|.+|...|||+|+++++|+|+|++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy6409 1095 G 1095 (1832)
Q Consensus 1095 g 1095 (1832)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 277
>COG4889 Predicted helicase [General function prediction only]
Probab=99.33 E-value=4.8e-12 Score=155.72 Aligned_cols=330 Identities=19% Similarity=0.194 Sum_probs=186.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHcCC----cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 741 EIIEKIGYAEPTPIQRQAIPIGLQNR----DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 741 ~~l~~~g~~~pt~iQ~~ai~~il~gr----dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
..|.-..-.+|+|+|++||.+++.|- --=+++..|+|||+..+- |-..+ ...++|+|+|+..
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEal-------------a~~~iL~LvPSIs 217 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEAL-------------AAARILFLVPSIS 217 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHH-------------hhhheEeecchHH
Confidence 33333345789999999999999751 134456679999998654 32222 2378999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH-----------------------H--HHhcCCceeecCHHHHHHHHH
Q psy6409 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-----------------------F--RLRLGCEIVIATPGRLIDVLE 871 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~-----------------------~--~l~~~~~IlV~TP~rL~d~l~ 871 (1832)
|..|..+....- ..+.++...++++....... . .-..+--||++|.+.+...-.
T Consensus 218 LLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 218 LLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 999977776653 34566666666554321100 0 001234588888888866655
Q ss_pred ccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH-
Q psy6409 872 NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE- 950 (1832)
Q Consensus 872 ~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~- 950 (1832)
-....+..+++||-||||+-........=..-+.++. .... -+...-+.++||..-.-+
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vH---------s~~n-----------iKa~kRlYmTATPkiy~eS 356 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVH---------SDQN-----------IKAAKRLYMTATPKIYSES 356 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeec---------Ccch-----------hHHHHhhhcccCchhhchh
Confidence 5556788999999999998542111000000000000 0000 001112333444211100
Q ss_pred --------------------------------HHHHHhcCCCcEEEEcccCC-CCcceEEEEEEcc------hhhHHHHH
Q psy6409 951 --------------------------------RLARSYLRRPATVYIGSVGK-PTERIEQIVYILS------EQDKRKKL 991 (1832)
Q Consensus 951 --------------------------------~~~~~~l~~p~~v~~~~~~~-~~~~i~q~~~~~~------~~~k~~~L 991 (1832)
.+.+..+.+...+...-... ....+........ ...++.-.
T Consensus 357 ~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~ 436 (1518)
T COG4889 357 SKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGC 436 (1518)
T ss_pred hhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhh
Confidence 11112222222111110000 0000000000000 01111111
Q ss_pred HHHHHcC---------------CCCCEEEEEcccchHHHHHHHHHH-------------cCCcEEE--EcCCCCHHHHHH
Q psy6409 992 MEVLNRG---------------VKKPVIIFVNQKKGADVLAKGLEK-------------LGYNACT--LHGGKGQEQREL 1041 (1832)
Q Consensus 992 ~~~l~~~---------------~~~~vIVFv~s~~~~~~l~~~L~~-------------~g~~v~~--lhg~~~~~~R~~ 1041 (1832)
..-|... +-.+.|-||.+.++...+++.+.. .++.+.+ +.|.|...+|..
T Consensus 437 wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~ 516 (1518)
T COG4889 437 WNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLD 516 (1518)
T ss_pred hhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHH
Confidence 1111110 112578999999888777776632 2444554 457899888865
Q ss_pred HHH---HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC--CCC-cEEEEEec
Q psy6409 1042 ALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKE-GLAVSFCT 1105 (1832)
Q Consensus 1042 il~---~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~--g~~-G~ai~~~~ 1105 (1832)
.+. .|...+++||--...+++|||+|..+-||.|++-.++-+.+|-+||.-|- |+. |..|+=+.
T Consensus 517 l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 517 LLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred HHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 544 45778999999999999999999999999999999999999999999994 433 65555443
No 278
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=9e-11 Score=151.79 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=102.4
Q ss_pred EcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc
Q psy6409 981 ILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058 (1832)
Q Consensus 981 ~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd 1058 (1832)
+.....|...+.+-+.. ..+.||||-+.|.+..+.|+..|...|++..++++.....+-+.|-+.-+.| .|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 34556677776665543 3677999999999999999999999999988888875554544444444444 4899999
Q ss_pred cccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1059 VAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
+|+||-||. +==+||--..+.|..--.|-.|||||-|.+|.+-.|++-+|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 999999996 33589988889999999999999999999999999999887
No 279
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.31 E-value=1e-11 Score=138.48 Aligned_cols=152 Identities=24% Similarity=0.229 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQ-------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~-------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
+|+|+|.+|+..+.. .+++++.+|||||||.+++..+..... .+||++|+..|+.|+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 589999999999883 588999999999999998866654431 7999999999999999
Q ss_pred HHHHHhcCCCCCeEEE-----------EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc-----------ccccCCc
Q psy6409 1498 EETNKFGTPLGIRTVL-----------VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----------YLVLNQC 1555 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~-----------l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~-----------~~~l~~v 1555 (1832)
..+..+.......... ..................+++++|.+.|....... .......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997764322110000 00111111122222346789999999998776531 1345577
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~ 1621 (1832)
++||+||||++.... .+..|+. . ....+++||||+.
T Consensus 148 ~~vI~DEaH~~~~~~---~~~~i~~-~--------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDS---SYREIIE-F--------------------------KAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHH---HHHHHHH-S--------------------------SCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHH---HHHHHHc-C--------------------------CCCeEEEEEeCcc
Confidence 999999999875432 1344443 1 2356899999985
No 280
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.30 E-value=9.7e-12 Score=138.61 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQ-------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~-------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
+|+++|.+|+..+.. ++++++.+|||||||.+++..+.... . +++|++|+..|+.|+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------~--~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------R--KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------C--EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------c--ceeEecCHHHHHHHHH
Confidence 578999999999984 58899999999999999886665432 1 8999999999999999
Q ss_pred HHHHHhcCCCCCeEEE-----------EEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-----------ccccCCc
Q psy6409 823 EETNKFGTPLGIRTVL-----------VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-----------YLVLNQC 880 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~-----------~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-----------~~~l~~~ 880 (1832)
..+..+.......... ...................++++|.+.|....... .......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997664432111000 00111111111222346889999999998776431 1245577
Q ss_pred eeEEEecchhhhc
Q psy6409 881 TYIVLDEADRMID 893 (1832)
Q Consensus 881 ~~lViDEaH~l~d 893 (1832)
++||+||||++..
T Consensus 148 ~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 148 DLVIIDEAHHYPS 160 (184)
T ss_dssp SEEEEETGGCTHH
T ss_pred CEEEEehhhhcCC
Confidence 8999999998764
No 281
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.29 E-value=2.8e-10 Score=147.98 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=76.9
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH--
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ-- 848 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~-- 848 (1832)
.+.+|||||.+|+-.+-..+. .|..+|||+|...|+.|+...|+.... +..++.++++.+..+.
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR------------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHH
Confidence 344699999999887765542 477899999999999999999998743 2568889988876543
Q ss_pred -HHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 849 -GFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 849 -~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
+..+..| +.|||||-..+ +..+.++.+|||||-|-
T Consensus 232 ~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred HHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCc
Confidence 3444445 78999997655 45788999999999993
No 282
>KOG0384|consensus
Probab=99.28 E-value=1.5e-10 Score=149.20 Aligned_cols=118 Identities=24% Similarity=0.315 Sum_probs=103.6
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC---CCCcEEEEcccccccCCCCCCCEEEEe
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG---GSKDILVATDVAGRGIDIKDVSMVINY 1750 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~---g~~~VLVATdvl~~GIDip~v~~VI~~ 1750 (1832)
.+++||||..-.+..+.|+++|...+|+..-+.|+...+.|+.+++.|.. .....|.||-+.+.|||+-..+.||+|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 45799999999999999999999999999999999999999999999974 445689999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC--hhHHHHHH
Q psy6409 1751 DMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD--SHLFYDLK 1791 (1832)
Q Consensus 1751 d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d--~~~~~~l~ 1791 (1832)
|--+|+.+=+|-..||-|-|+... ++-||+.+. .+++..-.
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk 822 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAK 822 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHH
Confidence 999999999999999999998754 555688763 34554443
No 283
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.27 E-value=1.9e-10 Score=149.64 Aligned_cols=91 Identities=24% Similarity=0.180 Sum_probs=70.1
Q ss_pred EEEEECchhHHHHHHHHHHHc------CCcEEEEcCCCCHHHHHHHHHHh----------------------hC----CC
Q psy6409 1678 VIIFVNQKKGADVLAKGLEKL------GYNACTLHGGKGQEQRELALNSL----------------------KG----GS 1725 (1832)
Q Consensus 1678 vIVFv~s~~~a~~l~~~L~~~------~~~v~~lHg~ls~~~R~~il~~F----------------------~~----g~ 1725 (1832)
.+|-++++..+-.+|..|... .+.+.+||+......|..+++.+ .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477788888888888877654 24477899999877777665443 12 46
Q ss_pred CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1726 ~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
..|+|||.+.+.|+|+ +++.+|- -|.++.+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 6899999999999999 5777654 36679999999999999764
No 284
>KOG0390|consensus
Probab=99.27 E-value=9.9e-10 Score=140.69 Aligned_cols=349 Identities=16% Similarity=0.188 Sum_probs=201.2
Q ss_pred CCcHHHHHHHHHHhc---C-------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQ---N-------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~---g-------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
.++|+|.+.+.-++. | ...|+.-..|+|||+..+.-|-.++.+.|.... --.++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-----cccccEEEccH-HHHH
Confidence 678999999987763 2 246667788999999866666666766664221 23568999995 6888
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcch--HHHHHHh-----hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSR--EEQGFRL-----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~--~~~~~~l-----~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
-++++|.++.....+....++|.... ......+ .-...|++-+-+.+.+.+. .+....+++||+||.|++-
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCcc
Confidence 89999988865545666777777664 0000001 1124566777776654433 3567789999999999742
Q ss_pred c----------------------CCChHHHHHHHHhC---CCCCC---------------CCCC--chh--hh----HHH
Q psy6409 1568 D----------------------MGFEPDVQKILEYM---PVTNL---------------KPDT--EDA--ED----ENK 1599 (1832)
Q Consensus 1568 ~----------------------~gf~~~l~~Il~~l---~~~~~---------------~~~~--~~~--~~----~~~ 1599 (1832)
. --|...+...++.+ .+..+ .... ... .. ...
T Consensus 390 N~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 390 NSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred chhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 1 11333333333322 11110 0000 000 00 011
Q ss_pred HH---hhhccc-----------cCcceEEEEEccCCh--HHHHH-------------------HHHhcCCCcEEEEcccC
Q psy6409 1600 LL---ANYNSK-----------KKYRQTVMFTATMPP--AVERL-------------------ARSYLRRPATVYIGSVG 1644 (1832)
Q Consensus 1600 l~---~~~~~~-----------~~~~q~v~~SATl~~--~~~~~-------------------~~~~l~~p~~v~i~~~~ 1644 (1832)
+. ..+-.. ...-.+|++-.|.-. .+..+ +....+.|..+......
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11 111000 011134444333211 01111 12222334333211000
Q ss_pred C------C-Ccc-----eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEE----CchhHHHHHHHHHHHcCCcEEEEcCC
Q psy6409 1645 K------P-TER-----IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV----NQKKGADVLAKGLEKLGYNACTLHGG 1708 (1832)
Q Consensus 1645 ~------~-~~~-----i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv----~s~~~a~~l~~~L~~~~~~v~~lHg~ 1708 (1832)
. . ... ......-.....+...|..+|... ...+++|| |.+.+-+.+...+...|+.+..+||.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~-~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVI-REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGK 628 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHH-hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCC
Confidence 0 0 000 001111122345556666665322 23344444 44444455555555569999999999
Q ss_pred CCHHHHHHHHHHhhCCCC--c-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE--eeCC
Q psy6409 1709 KGQEQRELALNSLKGGSK--D-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF--CTKD 1782 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~--~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~--~~~~ 1782 (1832)
|+..+|..+++.|.+... . .|.+|.+.+.||++-+.+.||.||..+|++.=.|-++||-|.|++-.|++| +...
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999986443 3 455678889999999999999999999999999999999999998777666 4443
No 285
>KOG0387|consensus
Probab=99.26 E-value=3.1e-10 Score=140.87 Aligned_cols=335 Identities=20% Similarity=0.208 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHH--HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLA--FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla--~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
.+.|||+..+.+++ ++..-|+.-.-|-|||.- +.|+.|.+- . .-...+|||||. .|+.|+.+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S------~-----k~~~paLIVCP~-Tii~qW~~ 272 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS------G-----KLTKPALIVCPA-TIIHQWMK 272 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc------c-----cccCceEEEccH-HHHHHHHH
Confidence 67899999999987 456789999999999963 223333221 0 122569999996 57789999
Q ss_pred HHHHhcCCCCCeEEEEECCcch---------HHHHHHh----hcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchh
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSR---------EEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~---------~~~~~~l----~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ 1565 (1832)
+|..+..+ ++|.+++|..+. ......+ .....|+|+|-..+. +....+.-..++|+|+||.|+
T Consensus 273 E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 273 EFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHR 348 (923)
T ss_pred HHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCccc
Confidence 99998754 567777765442 0001111 124679999976552 112233445679999999998
Q ss_pred hhcCC----------------------ChHHHH---HHHHhCCCCCCCCCCchh---------------hh--------H
Q psy6409 1566 MIDMG----------------------FEPDVQ---KILEYMPVTNLKPDTEDA---------------ED--------E 1597 (1832)
Q Consensus 1566 ll~~g----------------------f~~~l~---~Il~~l~~~~~~~~~~~~---------------~~--------~ 1597 (1832)
+-... +...+. .++.+..+..+-..+... .+ +
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 64322 222222 233333221111100000 00 0
Q ss_pred H---------HHHhhh-------ccccCcceEEEEEccCChHHHHHHHHh--------------------------cCCC
Q psy6409 1598 N---------KLLANY-------NSKKKYRQTVMFTATMPPAVERLARSY--------------------------LRRP 1635 (1832)
Q Consensus 1598 ~---------~l~~~~-------~~~~~~~q~v~~SATl~~~~~~~~~~~--------------------------l~~p 1635 (1832)
. -++.+. ....+.-++++++-|.- -..+...| .+.|
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~--QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHP 506 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKL--QRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHP 506 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHH--HHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCc
Confidence 0 011111 11123335666665532 11222222 2222
Q ss_pred cEEEEcccCCCCcceEEE--E-EEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHH-HcCCcEEEEcCCC
Q psy6409 1636 ATVYIGSVGKPTERIEQI--V-YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGK 1709 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~--~-~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~-~~~~~v~~lHg~l 1709 (1832)
..+.-... ...+. + -......|...+..++... .+.++|+|..++...+.|-..|. ..++...-+.|..
T Consensus 507 dll~~~~~-----~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT 581 (923)
T KOG0387|consen 507 DLLDRRDE-----DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTT 581 (923)
T ss_pred ccccCccc-----ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 22211100 00000 0 1123345667777766543 55699999999999999999998 5799999999999
Q ss_pred CHHHHHHHHHHhhCCCC-c-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEE--EeeCC
Q psy6409 1710 GQEQRELALNSLKGGSK-D-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS--FCTKD 1782 (1832)
Q Consensus 1710 s~~~R~~il~~F~~g~~-~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~--~~~~~ 1782 (1832)
+...|..+++.|.++.. . .|++|.|.+.|+|+-..+-||.||+-+++..=.|-.-||-|.|++-.+++ |++..
T Consensus 582 ~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 582 PAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred ccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 99999999999997654 3 57789999999999999999999999999999999999999997644443 46655
No 286
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=5.3e-10 Score=144.80 Aligned_cols=127 Identities=22% Similarity=0.333 Sum_probs=103.7
Q ss_pred EcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc
Q psy6409 1656 ILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733 (1832)
Q Consensus 1656 ~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd 1733 (1832)
+.....|..++++-+.. ..+.||||-+.|+...+.|+..|...|++..++++.....+.+.|-+.=+.| .|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEecc
Confidence 34556777777766543 3678999999999999999999999999988888776555555555544444 4899999
Q ss_pred cccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1734 VAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1734 vl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.++||.||. +=-+||-...+.|..---|-.|||||-|.+|.+..|++-.|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999996 335899999999999999999999999999999999987763
No 287
>KOG0390|consensus
Probab=99.23 E-value=8.3e-10 Score=141.39 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHc---CC----c---EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 750 EPTPIQRQAIPIGLQ---NR----D---IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~---gr----d---vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.+.|+|.+.+.-+.. |. + .|+.=..|+|||+..+..|..++.+.|.... .-.++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-----cccccEEEccH-HHHH
Confidence 578999999987764 22 2 4555578999999877666666665543211 23579999996 6888
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh---------cCCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---------LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~---------~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
-+.++|.++.....+....++|+... ++..+. -...|++.+.+.+.+.+.. +.+..+++||+||.|+
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCC
Confidence 89999999977667778888887763 111111 1356888888888655543 4567889999999997
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC-hHHHH-HHHHhcCCCcEEEE---
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-PAVER-LARSYLRRPATVYI--- 965 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~-~~v~~-~~~~~l~~p~~v~~--- 965 (1832)
+-+.. ..+...+..+ .-..-|++|.|+= +++.. |.-.-+.+|..+--
T Consensus 388 lkN~~--s~~~kaL~~l--------------------------~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~s 439 (776)
T KOG0390|consen 388 LKNSD--SLTLKALSSL--------------------------KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISS 439 (776)
T ss_pred ccchh--hHHHHHHHhc--------------------------CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHH
Confidence 64321 1122222222 1235678899961 11211 11111222221100
Q ss_pred ----------------------------------------cccC-----CCCcceEEEEEEcchhhH----HHHHHH---
Q psy6409 966 ----------------------------------------GSVG-----KPTERIEQIVYILSEQDK----RKKLME--- 993 (1832)
Q Consensus 966 ----------------------------------------~~~~-----~~~~~i~q~~~~~~~~~k----~~~L~~--- 993 (1832)
...+ ..+...+ ++.++..... ...++.
T Consensus 440 f~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e-~vv~~n~t~~Q~~~~~~l~~~~~ 518 (776)
T KOG0390|consen 440 FKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYE-YVVFCNPTPIQKELYKKLLDSMK 518 (776)
T ss_pred HHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCcee-EEEEeCCcHHHHHHHHHHHHHHH
Confidence 0000 0111122 2222221100 000110
Q ss_pred -----------H--HHcCCC-----------------------------------------------------CCEEEEE
Q psy6409 994 -----------V--LNRGVK-----------------------------------------------------KPVIIFV 1007 (1832)
Q Consensus 994 -----------~--l~~~~~-----------------------------------------------------~~vIVFv 1007 (1832)
+ |...-. ..+++|+
T Consensus 519 ~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~ 598 (776)
T KOG0390|consen 519 MRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKS 598 (776)
T ss_pred hhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEE
Confidence 0 000000 1244444
Q ss_pred cccch----HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC--c-EEEecccccccCCCcCcCEEEEcCCCCC
Q psy6409 1008 NQKKG----ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK--D-ILVATDVAGRGIDIKDVSMVINYDMAKS 1080 (1832)
Q Consensus 1008 ~s~~~----~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~--~-VLVaTdv~~rGlDip~v~~VI~~d~p~s 1080 (1832)
.-... -+.+.......|+.+..+||.|+..+|+.+++.|.+... . .|.+|-+.+.||++=+.+-||.||...+
T Consensus 599 v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWN 678 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWN 678 (776)
T ss_pred EEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCC
Confidence 43332 222233334459999999999999999999999976433 3 5677889999999999999999999999
Q ss_pred HhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1081 IEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1081 ~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
++.=.|-++||=|.|+.- .++.|++.+
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999999999875 455566665
No 288
>KOG0387|consensus
Probab=99.22 E-value=6.5e-10 Score=138.04 Aligned_cols=339 Identities=19% Similarity=0.247 Sum_probs=209.9
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..+.|+|+..+.-+.. +.--|+--.-|-|||..-+ ..|..| .... .-...+|||||. .|..|+.++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL---~~S~-----k~~~paLIVCP~-Tii~qW~~E 273 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAAL---HHSG-----KLTKPALIVCPA-TIIHQWMKE 273 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHH---hhcc-----cccCceEEEccH-HHHHHHHHH
Confidence 3567999999887763 4457888899999996421 111111 1111 112569999997 466889999
Q ss_pred HHHhcCCCCCeEEEEEcCCch---------HHHHHHH----hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSR---------EEQGFRL----RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~---------~~~~~~l----~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
|..+..+ ++|..++|-.+. ......+ ....+|+|+|...+ .. ....+.-..|.|+|+||.|++
T Consensus 274 ~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~-r~-~~d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 274 FQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF-RI-QGDDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh-cc-cCcccccccccEEEecCcccc
Confidence 9999654 567777664441 0111111 12467999998766 22 222334457899999999985
Q ss_pred hcCC----------------------ChHHHHHH---HHhCC----------------------CCCCCCCCchh-HH--
Q psy6409 892 IDMG----------------------FEPDVQKI---LEYMP----------------------VTNLKPDTEDA-ED-- 921 (1832)
Q Consensus 892 ~d~g----------------------f~~~i~~I---l~~l~----------------------~~~~~~~~~~~-~~-- 921 (1832)
-+.. +...+..+ +.... ..+..+..... ..
T Consensus 350 rNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca 429 (923)
T KOG0387|consen 350 RNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCA 429 (923)
T ss_pred cCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHH
Confidence 4322 11112222 11111 00000000000 00
Q ss_pred -----------HHHHHHhhc---cccccceEEEEEecCChHHHHHHHHhcC--------------------------CCc
Q psy6409 922 -----------ENKLLANYN---SKKKYRQTVMFTATMPPAVERLARSYLR--------------------------RPA 961 (1832)
Q Consensus 922 -----------~~~ll~~~~---~~~~~~q~v~~SATl~~~v~~~~~~~l~--------------------------~p~ 961 (1832)
+.++-..+. ...+.-++++++-|. .-..+...|+. .|.
T Consensus 430 ~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~--~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 430 VALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTK--LQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccH--HHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 111111111 123344666666663 33333333332 121
Q ss_pred EEEEcccCCCCcceEEEE---EEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q psy6409 962 TVYIGSVGKPTERIEQIV---YILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGKG 1035 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~---~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~-~~g~~v~~lhg~~~ 1035 (1832)
.+.-.. ....+.. .......|+..+..++.. ..+.++|+|..++...+.|-.+|. ..||.++-+.|..+
T Consensus 508 ll~~~~-----~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 508 LLDRRD-----EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred cccCcc-----cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 111100 0111111 122344577777777654 345689999999999999999998 68999999999999
Q ss_pred HHHHHHHHHHHhCCCCc--EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1036 QEQRELALNSLKGGSKD--ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1036 ~~~R~~il~~F~~G~~~--VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
...|..+++.|.++..- .|++|-+.+-|+|+-..+-||.||+-.++..=.|-.-||-|.|+. =.++.|++...
T Consensus 583 ~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 583 AALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred cchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99999999999977543 588999999999999999999999999999999999999999876 35667777763
No 289
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=2e-09 Score=144.20 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=79.0
Q ss_pred HHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHhhCCCC-cEEEEcccccccCCCC
Q psy6409 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGIDIK 1742 (1832)
Q Consensus 1665 ~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~-v~~lHg~ls~~~R~~il~~F~~g~~-~VLVATdvl~~GIDip 1742 (1832)
.+..++... ++++|||++|....+.++..|...... ....+|..+ +...++.|+.+.- -++|+|..+++|||+|
T Consensus 470 ~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKAS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 344444433 458999999999999999999876543 344455443 4478888876554 8999999999999999
Q ss_pred C--CCEEEEeCCCC------------------------------CHHHHHHHhcccccCCC-ccEEEEE
Q psy6409 1743 D--VSMVINYDMAK------------------------------SIEDYTHRIGRTGRAGK-EGLAVSF 1778 (1832)
Q Consensus 1743 ~--v~~VI~~d~P~------------------------------s~~~yiQRiGRaGR~g~-~G~ai~~ 1778 (1832)
+ +..||...+|- .+..+.|-+||.-|.-+ .|..+++
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 6 46788766653 35567899999999543 3444433
No 290
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.21 E-value=5.6e-09 Score=138.69 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=74.0
Q ss_pred CCCcEEEEECchhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhh----CCCCcEEEEcccccccCCCCC--CCE
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLK----GGSKDILVATDVAGRGIDIKD--VSM 1746 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~----~g~~~VLVATdvl~~GIDip~--v~~ 1746 (1832)
..+.+|||++|.+..+.++..|.. .+..+ ..+|. ..+..+++.|+ .|+-.||++|..+.+|||+|+ +.+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 344589999999999999998874 34443 34554 24677887776 467789999999999999996 788
Q ss_pred EEEeCCCC----C--------------------------HHHHHHHhcccccCCCc-cEEEEEeeCC
Q psy6409 1747 VINYDMAK----S--------------------------IEDYTHRIGRTGRAGKE-GLAVSFCTKD 1782 (1832)
Q Consensus 1747 VI~~d~P~----s--------------------------~~~yiQRiGRaGR~g~~-G~ai~~~~~~ 1782 (1832)
||...+|- + +..+.|-+||.=|..+. |. ++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~-i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR-VTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE-EEEEccc
Confidence 98877652 1 22356889999996543 53 4444443
No 291
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.21 E-value=3.3e-09 Score=140.84 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=61.4
Q ss_pred HHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHh----CCCCcEEEecccccccCC
Q psy6409 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLK----GGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 991 L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il~~F~----~G~~~VLVaTdv~~rGlD 1065 (1832)
+..++. ..+.+|||++|....+.++..|... +.. ...+|.. .+..+++.|+ .|.-.||++|..+.+|||
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 334444 3445899999999999999998743 333 3445542 4677887776 477789999999999999
Q ss_pred CcC--cCEEEEcCCCC
Q psy6409 1066 IKD--VSMVINYDMAK 1079 (1832)
Q Consensus 1066 ip~--v~~VI~~d~p~ 1079 (1832)
+|+ +++||...+|.
T Consensus 601 ~pGd~l~~vII~kLPF 616 (697)
T PRK11747 601 LPGDYLTQVIITKIPF 616 (697)
T ss_pred CCCCceEEEEEEcCCC
Confidence 987 67888877663
No 292
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=9.5e-09 Score=137.72 Aligned_cols=74 Identities=26% Similarity=0.286 Sum_probs=61.4
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
+.|..++|.|.+.+..+. .|.++++-||||+|||++.+.|+|.+....+ ..++++|.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---------ccccEEEEcccchHHHHH
Confidence 467777999999887665 6789999999999999999999998875422 246799999998888888
Q ss_pred HHHHHHh
Q psy6409 1497 EEETNKF 1503 (1832)
Q Consensus 1497 ~~~~~~~ 1503 (1832)
.+++++.
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 8888884
No 293
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.16 E-value=3.6e-09 Score=141.67 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=77.1
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc-EEEEcCCCCHHHHHHHHHHHhCCCC-cEEEecccccccCCC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN-ACTLHGGKGQEQRELALNSLKGGSK-DILVATDVAGRGIDI 1066 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~-v~~lhg~~~~~~R~~il~~F~~G~~-~VLVaTdv~~rGlDi 1066 (1832)
..+..++.. .++.+|||++|......+++.|...... ....+|..+ +..+++.|+.+.- -++|+|..+++|||+
T Consensus 469 ~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 334444443 4448999999999999999999876553 445555544 4477888876655 899999999999999
Q ss_pred cCc--CEEEEcCCCC------------------------------CHhHHHHHhcccccCCCC
Q psy6409 1067 KDV--SMVINYDMAK------------------------------SIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1067 p~v--~~VI~~d~p~------------------------------s~~~yvQr~GRaGR~g~~ 1097 (1832)
|+- ..||..++|- -+..+.|-+||.=|.-.+
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 976 5777766653 344678999999995444
No 294
>KOG0384|consensus
Probab=99.14 E-value=3.2e-09 Score=137.29 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=100.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC---CCCcEEEecccccccCCCcCcCEEEEc
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG---GSKDILVATDVAGRGIDIKDVSMVINY 1075 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~---G~~~VLVaTdv~~rGlDip~v~~VI~~ 1075 (1832)
.+.+||||..-...-+.|+++|...+|+..-+.|++..+.|+.+++.|.. ..+-.|.||-+.+-|||+-..+.||.|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 45789999999999999999999999999999999999999999999975 355689999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1076 DMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1076 d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
|--.++..=+|-..||-|-|+.- .++.|+|.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999774 578899987
No 295
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.14 E-value=1.5e-08 Score=124.00 Aligned_cols=308 Identities=19% Similarity=0.217 Sum_probs=206.0
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCC-CCe----EEEEEc--------------CCchHHHHHHHh-----------
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR----TVLVVG--------------GLSREEQGFRLR----------- 853 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~----v~~~~G--------------g~~~~~~~~~l~----------- 853 (1832)
..|+||||+|+|..|.++.+.+-.++... .+. -..-+| .....+....+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 46899999999999999988887765431 000 000011 000011111111
Q ss_pred --------------cCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 854 --------------LGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 854 --------------~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
.++|||||+|=-|-..+.. ....|+.+.++|||.||.|+- .--..+..|+..+...
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~Hv~~v~~~lN~~--- 191 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWEHVLHVFEHLNLQ--- 191 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHHHHHHHHHHhccC---
Confidence 1489999999888666653 344799999999999997663 3334566666665332
Q ss_pred CCCc-hhHHHHHHHHhh-ccccccceEEEEEecCChHHHHHHHHhcCCCcE-EEE-------cccCCCCcceEEEEEEcc
Q psy6409 914 PDTE-DAEDENKLLANY-NSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYI-------GSVGKPTERIEQIVYILS 983 (1832)
Q Consensus 914 ~~~~-~~~~~~~ll~~~-~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~-v~~-------~~~~~~~~~i~q~~~~~~ 983 (1832)
|... +.+...--...+ ......+|+|+||+...+.+..+....+.+... +.+ +........+.|.+.-+.
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 3222 222211111222 234567999999999999999888886554322 211 112234455667665432
Q ss_pred -------hhhHHHH----HHHHHH-cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 984 -------EQDKRKK----LMEVLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 984 -------~~~k~~~----L~~~l~-~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
.+.+... ++..+. ....+.+|||+++--+=..+-++|...++..+.+|--.++.+-..+-..|..|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 2233332 333333 4556789999999988889999999999999999999999999999999999999
Q ss_pred cEEEeccc--ccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC------CcEEEEEecCCCchHHHHH
Q psy6409 1052 DILVATDV--AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK------EGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1052 ~VLVaTdv--~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~------~G~ai~~~~~~d~~~~~~l 1115 (1832)
+||+-|.= .=+=..|.+|..||-|++|..+.=|-..++-.+.... .+.|.++++.=|...+..|
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999953 3345678889999999999998888777665544332 4799999998886655554
No 296
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.3e-08 Score=136.35 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=60.3
Q ss_pred cCCCCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
+-|..++|.|.+.+..+. .+.++++.||||+|||++.+.|+|.++... ...++++|.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~---------~~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK---------PEVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc---------cccccEEEEcccchHHHHH
Confidence 457778999998877665 478999999999999999999999876432 1246899999998888888
Q ss_pred HHHHHHh
Q psy6409 822 EEETNKF 828 (1832)
Q Consensus 822 ~~~~~~~ 828 (1832)
.+++++.
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 8888874
No 297
>KOG1000|consensus
Probab=99.11 E-value=9.4e-09 Score=121.36 Aligned_cols=326 Identities=15% Similarity=0.214 Sum_probs=198.9
Q ss_pred CCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+.|+|.+.+..++. |.-+++.-.-|-|||+.++--+-.+.. .. -.||+||.- |-..+.+.+.
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------------Ew-plliVcPAs-vrftWa~al~ 261 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------------EW-PLLIVCPAS-VRFTWAKALN 261 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------------cC-cEEEEecHH-HhHHHHHHHH
Confidence 34567999999988775 667999999999999987654443321 23 378999974 4455777888
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+++....- +..+.++.+.-. .+.....|.|.+.+.+.. + +..+.-..+.+||+||+|+|-+. ...-...++..
T Consensus 262 r~lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~-l-~~~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dl 334 (689)
T KOG1000|consen 262 RFLPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSL-L-HDILKKEKYRVVIFDESHMLKDS-KTKRTKAATDL 334 (689)
T ss_pred Hhcccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHH-H-HHHHhcccceEEEEechhhhhcc-chhhhhhhhhH
Confidence 87554322 445555544211 122235788888887732 2 22334455899999999966542 11112222211
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecC-------------------ChHHHHHHHHhcCC---CcEEE
Q psy6409 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM-------------------PPAVERLARSYLRR---PATVY 964 (1832)
Q Consensus 907 l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl-------------------~~~v~~~~~~~l~~---p~~v~ 964 (1832)
+ . ....+|++|.|. -+.-..|+..|... +..+.
T Consensus 335 l-------------------k------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D 389 (689)
T KOG1000|consen 335 L-------------------K------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD 389 (689)
T ss_pred H-------------------H------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee
Confidence 1 0 113456666663 11222333333321 11111
Q ss_pred Ecc------------------------cCCCCcceEEEEEEcch------------------------------------
Q psy6409 965 IGS------------------------VGKPTERIEQIVYILSE------------------------------------ 984 (1832)
Q Consensus 965 ~~~------------------------~~~~~~~i~q~~~~~~~------------------------------------ 984 (1832)
... ....+..-.+.++.+..
T Consensus 390 ykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~t 469 (689)
T KOG1000|consen 390 YKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLT 469 (689)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHh
Confidence 100 00011111122222110
Q ss_pred -hhHHHHHHHHHHc------CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcE-EE
Q psy6409 985 -QDKRKKLMEVLNR------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LV 1055 (1832)
Q Consensus 985 -~~k~~~L~~~l~~------~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G-~~~V-LV 1055 (1832)
..|...+.+.+.. .++.+.+|||+....-+.+...+.+.+++..-+.|..+..+|....+.|... ++.| ++
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvl 549 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVL 549 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEE
Confidence 0122223333332 2456899999999999999999999999999999999999999999999754 3343 45
Q ss_pred ecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc-E-EEEEecCC--CchHHHHHHHHH
Q psy6409 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-L-AVSFCTKD--DSHLFYDLKQMM 1119 (1832)
Q Consensus 1056 aTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G-~-ai~~~~~~--d~~~~~~l~~~l 1119 (1832)
+..+++.||++.+.++|+...++.++.-.+|-=-|+-|-|+.. . .+.|+.++ |..++..|.+-+
T Consensus 550 sItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 550 SITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 5678999999999999999999999888888888888877653 3 23344443 555666665544
No 298
>KOG0392|consensus
Probab=99.09 E-value=6.5e-09 Score=133.72 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=92.2
Q ss_pred CCcEEEEECchhHHHHHHHHHHHcC-CcEE--EEcCCCCHHHHHHHHHHhhCC-CCcEEE-EcccccccCCCCCCCEEEE
Q psy6409 1675 KKPVIIFVNQKKGADVLAKGLEKLG-YNAC--TLHGGKGQEQRELALNSLKGG-SKDILV-ATDVAGRGIDIKDVSMVIN 1749 (1832)
Q Consensus 1675 ~~~vIVFv~s~~~a~~l~~~L~~~~-~~v~--~lHg~ls~~~R~~il~~F~~g-~~~VLV-ATdvl~~GIDip~v~~VI~ 1749 (1832)
.+++||||.-+...+.+-+.|-+.- .+|. .+.|..++.+|.++.++|.++ .++||+ +|-|.+.|+|+-+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 3579999999999999998886543 3444 578999999999999999998 788876 6789999999999999999
Q ss_pred eCCCCCHHHHHHHhcccccCCCccE--EEEEeeCC
Q psy6409 1750 YDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1782 (1832)
Q Consensus 1750 ~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~ 1782 (1832)
++--+|+-.=+|-+-||-|-|++-+ ++-|++..
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999988888999999999998754 44557766
No 299
>KOG1000|consensus
Probab=99.07 E-value=2.5e-08 Score=117.91 Aligned_cols=323 Identities=16% Similarity=0.244 Sum_probs=192.6
Q ss_pred CCcHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il-~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+.|+|.+.+..++ .|.-+++.-.-|-|||+-++-.+-.|... +| .||+||.- |-..+.+.+.+|
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE------------wp-lliVcPAs-vrftWa~al~r~ 263 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE------------WP-LLIVCPAS-VRFTWAKALNRF 263 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc------------Cc-EEEEecHH-HhHHHHHHHHHh
Confidence 56799999887666 56778999999999999764433333322 22 78999963 445677778877
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
.....- +-.+.++...-. .+.....|.|.+-+.+..+- ..+.-..+.+||+||+|+|-+. -......++..+.
T Consensus 264 lps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 264 LPSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred cccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 543322 333333333211 12223568888877654321 2233445899999999966432 1212222221111
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCC-------------------hHHHHHHHHhcCCC-cEEEEccc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP-------------------PAVERLARSYLRRP-ATVYIGSV 1643 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~-------------------~~~~~~~~~~l~~p-~~v~i~~~ 1643 (1832)
....++++|.|+. +..-++...|...- ..+.....
T Consensus 337 -------------------------~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dyk 391 (689)
T KOG1000|consen 337 -------------------------VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYK 391 (689)
T ss_pred -------------------------HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecC
Confidence 1123444444431 11112222221100 00000000
Q ss_pred C---------------------------CCCcceEEEEEEc-------------------------------------ch
Q psy6409 1644 G---------------------------KPTERIEQIVYIL-------------------------------------SE 1659 (1832)
Q Consensus 1644 ~---------------------------~~~~~i~q~~~~~-------------------------------------~~ 1659 (1832)
+ .|.. -.+.++.+ ..
T Consensus 392 g~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tg 470 (689)
T KOG1000|consen 392 GCTNLEELAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTG 470 (689)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 0 0000 01111111 01
Q ss_pred hhHHHHHHHHHHh------CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC-CCcE-EEE
Q psy6409 1660 QDKRKKLMEVLNR------GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVA 1731 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~------~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g-~~~V-LVA 1731 (1832)
..|...+++.+.. .+..+.+|||....-.+.+-..+...+++..-+.|..++.+|....+.|... ++.| +++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEE
Confidence 1233444555443 2456899999999999999999999999999999999999999999999754 4444 345
Q ss_pred cccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc-EEE-EEeeCC--ChhHHHHHHHHh
Q psy6409 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG-LAV-SFCTKD--DSHLFYDLKQMM 1794 (1832)
Q Consensus 1732 Tdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G-~ai-~~~~~~--d~~~~~~l~~~l 1794 (1832)
-.+++.|+++.+.++||...+++++.-++|---|+-|.|+.. +.+ .|+-.. |...+..+.+.+
T Consensus 551 ItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 551 ITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999988764 333 334443 445555555444
No 300
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.07 E-value=1.6e-08 Score=131.92 Aligned_cols=95 Identities=11% Similarity=0.198 Sum_probs=74.4
Q ss_pred CCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH---HH
Q psy6409 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ---GF 1525 (1832)
Q Consensus 1449 TGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~---~~ 1525 (1832)
+|||||.+|+-.+-..+. .|..+|||+|...|+.|+...++..+. +..++.++++.+..+. +.
T Consensus 169 ~GSGKTevyl~~i~~~l~------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~ 234 (665)
T PRK14873 169 PGEDWARRLAAAAAATLR------------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWL 234 (665)
T ss_pred CCCcHHHHHHHHHHHHHH------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHH
Confidence 599999999877765543 377899999999999999999998753 2568888888886643 33
Q ss_pred HhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccch
Q psy6409 1526 RLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1526 ~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH 1564 (1832)
.+..| +.|||+|-..+ +..+.++++|||||=|
T Consensus 235 ~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEh 267 (665)
T PRK14873 235 AVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDG 267 (665)
T ss_pred HHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCC
Confidence 44444 78999995433 3568999999999999
No 301
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.07 E-value=6.3e-08 Score=118.77 Aligned_cols=259 Identities=17% Similarity=0.210 Sum_probs=179.5
Q ss_pred CCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1530 GCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1530 ~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
++|||||+|=-|-..+.. ..-.|+.+.++|+|.||.|+-.++ +.+..|+..+.......... +........-
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW-~Hv~~v~~~lN~~P~~~~~~-DfsRVR~w~L 208 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNW-EHVLHVFEHLNLQPKKSHDT-DFSRVRPWYL 208 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhH-HHHHHHHHHhccCCCCCCCC-CHHHHHHHHH
Confidence 479999999888776653 334689999999999997775553 45666666665433222221 1111111222
Q ss_pred hccccCcceEEEEEccCChHHHHHHHHhcCCCc-EEEEcc-------cCCCCcceEEEEEEcch-------hhHHHHHHH
Q psy6409 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPA-TVYIGS-------VGKPTERIEQIVYILSE-------QDKRKKLME 1668 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~-~v~i~~-------~~~~~~~i~q~~~~~~~-------~~k~~~l~~ 1668 (1832)
-......+|+|++|+...+.+..+....+.+.. .+.+.. .......+.|.+.-.+. ..+...+..
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 223456789999999999999988887554432 122211 12233455666554321 223333322
Q ss_pred ----HHH-hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc--cccCCC
Q psy6409 1669 ----VLN-RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA--GRGIDI 1741 (1832)
Q Consensus 1669 ----~l~-~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl--~~GIDi 1741 (1832)
.+. ....+.+|||++|--.--.|-++|...++..+.+|--.++.+-..+-..|.+|+.+||+-|.=+ =+=..|
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 223 4456789999999999999999999999999999999999999999999999999999999643 345678
Q ss_pred CCCCEEEEeCCCCCHHHHHHHhcccccCC------CccEEEEEeeCCChhHHHHH
Q psy6409 1742 KDVSMVINYDMAKSIEDYTHRIGRTGRAG------KEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1742 p~v~~VI~~d~P~s~~~yiQRiGRaGR~g------~~G~ai~~~~~~d~~~~~~l 1790 (1832)
.++..||.|.+|..+.=|-..++-.+... ..+.|.++++.-|.-.+..+
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 88999999999999887777775554433 25789999998887666554
No 302
>KOG0389|consensus
Probab=98.98 E-value=1.8e-08 Score=125.39 Aligned_cols=346 Identities=18% Similarity=0.260 Sum_probs=209.7
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
++-+||.-.+.|+. .+-+.|+.-.-|-|||.- +++.|.++.+. ..+|| -|||||.-.| .-|.+++
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~--------g~~gp-HLVVvPsSTl-eNWlrEf 467 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI--------GNPGP-HLVVVPSSTL-ENWLREF 467 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc--------CCCCC-cEEEecchhH-HHHHHHH
Confidence 48899999998875 455779999999999975 45555555442 12344 6888998776 4577888
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHH-Hhh---cCCcEEEeCHHHHHHHH-HccccccCCceeEEEccchhhhcCC-----
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGF-RLR---LGCEIVIATPGRLIDVL-ENRYLVLNQCTYIVLDEADRMIDMG----- 1570 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~-~l~---~~~~IiVaTP~rl~~~l-~~~~~~l~~v~llViDEaH~ll~~g----- 1570 (1832)
.+||.. ++|..++|......+.. .+. .+.+|+|+|......-- .+..+.-.+++++|+||+|.|-+..
T Consensus 468 ~kwCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 468 AKWCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHhCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 888854 57788888775444322 222 25899999976443111 1223455678999999999643321
Q ss_pred -----------------ChHHHHHHHHhC----CCCC------------CCCCC----chh-------hhHHH-----HH
Q psy6409 1571 -----------------FEPDVQKILEYM----PVTN------------LKPDT----EDA-------EDENK-----LL 1601 (1832)
Q Consensus 1571 -----------------f~~~l~~Il~~l----~~~~------------~~~~~----~~~-------~~~~~-----l~ 1601 (1832)
....+..+++.+ |... .+..+ +.. ..+.. ++
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 111122222211 1000 00100 000 00000 11
Q ss_pred hh-----hccccCc---ceEEEEEccCChHHHHHHHHhc-----------------------------------------
Q psy6409 1602 AN-----YNSKKKY---RQTVMFTATMPPAVERLARSYL----------------------------------------- 1632 (1832)
Q Consensus 1602 ~~-----~~~~~~~---~q~v~~SATl~~~~~~~~~~~l----------------------------------------- 1632 (1832)
++ +....+. .+.+.||.+--.....++..+.
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 11 1112222 3344455553333333333331
Q ss_pred -------CCCcEEEEccc------C-------------CC-CcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEEC
Q psy6409 1633 -------RRPATVYIGSV------G-------------KP-TERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVN 1683 (1832)
Q Consensus 1633 -------~~p~~v~i~~~------~-------------~~-~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~ 1683 (1832)
+.|........ . .+ .....-.-.......|...|..+|... .+.+||||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 11111000000 0 00 000000000112345666777777654 4579999999
Q ss_pred chhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC-Cc-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS-KD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1684 s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~-~~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
--...+-|-..|..+++.-.-+.|...-.+|+.+++.|-..+ +. .|.+|-+.+-|||+-..++||.||+..++-+=.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 888888888899999999999999999999999999997544 33 5779999999999999999999999888888888
Q ss_pred HhcccccCCCc--cEEEEEeeCCC
Q psy6409 1762 RIGRTGRAGKE--GLAVSFCTKDD 1783 (1832)
Q Consensus 1762 RiGRaGR~g~~--G~ai~~~~~~d 1783 (1832)
---||-|.|+. =.++.|++.+.
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecCc
Confidence 88888888865 56667788874
No 303
>KOG0921|consensus
Probab=98.96 E-value=3.5e-09 Score=132.04 Aligned_cols=337 Identities=22% Similarity=0.270 Sum_probs=204.6
Q ss_pred HHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH-HhcCCC
Q psy6409 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPL 832 (1832)
Q Consensus 754 iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~-~~~~~~ 832 (1832)
+-+..+.++..++-+++-+.||+|||.-+.--||..+.+.. ......+.+-.|+|--|..+++.+. ..+...
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~ 454 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEV 454 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhh
Confidence 34455666667788999999999999999998988775532 2334568888899998888877664 333333
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCC-
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN- 911 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~- 911 (1832)
+-.|+. ..+... ..-..--.|..+|-|-++.++... +..+.++|+||.|.. +.. ...+..|++-+-.+.
T Consensus 455 g~tvgy----~vRf~S-a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiher-dv~-~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 455 GETCGY----NVRFDS-ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHER-DVD-TDFVLIVLREMISTYR 524 (1282)
T ss_pred cccccc----cccccc-cccccccceeeeccchhhhhhhhc---ccccccccchhhhhh-ccc-hHHHHHHHHhhhccch
Confidence 332222 111111 011123468899999999888774 556788999999943 211 111222222221110
Q ss_pred -----CCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCC------------Ccc
Q psy6409 912 -----LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP------------TER 974 (1832)
Q Consensus 912 -----~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~------------~~~ 974 (1832)
+...+.+++.....++. -.++.+.++|+| +..|...+...+.....+..... ...
T Consensus 525 dl~v~lmsatIdTd~f~~~f~~------~p~~~~~grt~p--vq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~dd 596 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTDLFTNFFSS------IPDVTVHGRTFP--VQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDD 596 (1282)
T ss_pred hhhhhhhhcccchhhhhhhhcc------ccceeecccccc--HHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhh
Confidence 01112222222222222 245677777776 33344443333332222211100 000
Q ss_pred eEE----------------EEEEcchhhHHHHHHHHH-----HcCCCCCEEEEEcccchHHHHHHHHHHc-------CCc
Q psy6409 975 IEQ----------------IVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYN 1026 (1832)
Q Consensus 975 i~q----------------~~~~~~~~~k~~~L~~~l-----~~~~~~~vIVFv~s~~~~~~l~~~L~~~-------g~~ 1026 (1832)
-.. ......+......|.+.+ ...-.+-++||...-...-.|+..|... .+.
T Consensus 597 K~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ 676 (1282)
T KOG0921|consen 597 KGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE 676 (1282)
T ss_pred cccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc
Confidence 000 000011111112222222 2234567999999999988888888544 467
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------------------CCHhHHHHHh
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRI 1088 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------------------~s~~~yvQr~ 1088 (1832)
+...|+.++..++.++++....|..++++.|++++..+.|.++.+||+.+.. .|....+||.
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred cccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 8999999999999999999999999999999999999999998888865542 1566789999
Q ss_pred cccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1089 GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
||+||.- .|.|+.+++.- .+..+.++.
T Consensus 757 gr~grvR-~G~~f~lcs~a---rF~~l~~~~ 783 (1282)
T KOG0921|consen 757 GRAGRVR-PGFCFHLCSRA---RFEALEDHG 783 (1282)
T ss_pred ccCceec-ccccccccHHH---HHHHHHhcC
Confidence 9999964 58888887753 344444443
No 304
>KOG0389|consensus
Probab=98.94 E-value=3.4e-08 Score=122.96 Aligned_cols=124 Identities=25% Similarity=0.307 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC-C-cEEEecccc
Q psy6409 985 QDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS-K-DILVATDVA 1060 (1832)
Q Consensus 985 ~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~-~-~VLVaTdv~ 1060 (1832)
..|...|..+|... .+.+||||..--..-+.|-..|..+++...-+.|...-..|+.+++.|-..+ + -.|.+|-+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 35666666666542 4578999999888888899999999999999999999999999999997543 3 358999999
Q ss_pred cccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKDD 1108 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~d 1108 (1832)
+-|||+-..++||.||+-.++-+=.|---||-|.|+. =+++.|++.+.
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 9999999999999999988888778888888888765 57788888874
No 305
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.93 E-value=6.1e-08 Score=124.09 Aligned_cols=292 Identities=16% Similarity=0.201 Sum_probs=174.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
.++.||.|||||.+..-++-..+. ....++|+|+..+.|+.++...++..+.. |+....-.++.....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG 119 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc
Confidence 578899999999875443322211 24678999999999999999999875321 222111111111110
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHh
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~ 1602 (1832)
...+-+++..+.|..+. ...+.++++|||||+--.+..-|.+.++..-..+ .++.
T Consensus 120 ------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~----------------~~L~ 174 (824)
T PF02399_consen 120 ------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVD----------------NLLK 174 (824)
T ss_pred ------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHH----------------HHHH
Confidence 12466777766665443 2246779999999998766554433333211100 0111
Q ss_pred hhccccCcceEEEEEccCChHHHHHHHHhcCC-CcEEEEcccCCCCcceEEEE---------------------------
Q psy6409 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV--------------------------- 1654 (1832)
Q Consensus 1603 ~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~-p~~v~i~~~~~~~~~i~q~~--------------------------- 1654 (1832)
. -......+|++-|++....-+++..+..+ +..+.++....+.-.-.+-+
T Consensus 175 ~--lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 252 (824)
T PF02399_consen 175 E--LIRNAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTP 252 (824)
T ss_pred H--HHHhCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCc
Confidence 0 01234578999999999988888876543 23333322111100000000
Q ss_pred -----------EEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1655 -----------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1655 -----------~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
.......-...|..-|. .++++-||++|..-++.+++.....+..+..++|.-...+ + +. =
T Consensus 253 ~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W 324 (824)
T PF02399_consen 253 KHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--W 324 (824)
T ss_pred CCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--c
Confidence 00000111112222222 4567889999999999999999888889998888665552 2 22 3
Q ss_pred CCCcEEEEcccccccCCCCCC--CEEEEe--CC--CCCHHHHHHHhcccccCCCccEEEEEeeCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDV--SMVINY--DM--AKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v--~~VI~~--d~--P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~ 1782 (1832)
++++|+|=|+++..|+++.+. +-|+-| .+ ..+..+..|++||+-.- .....++++...
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 678999999999999998654 344444 22 24677899999999444 356666666654
No 306
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.88 E-value=1.4e-07 Score=121.00 Aligned_cols=292 Identities=15% Similarity=0.196 Sum_probs=176.2
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
.+|-||.|||||.+..-++-..+ ..++.++|+|+.++.|+.+....|+..+-. |+....-.++.....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l-----------~~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDAL-----------KNPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG 119 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhc-----------cCCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc
Confidence 78899999999987544433221 135778999999999999999999875321 222221111111110
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHH
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~ 927 (1832)
...+-+++..+.|..+- ...+.++++|||||+-..+..=|.+.++..- ....++.
T Consensus 120 ------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~----------------~v~~~L~ 174 (824)
T PF02399_consen 120 ------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQRE----------------EVDNLLK 174 (824)
T ss_pred ------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHH----------------HHHHHHH
Confidence 12456677766664432 2257789999999999766543333322211 1111222
Q ss_pred hhccccccceEEEEEecCChHHHHHHHHhcCC-CcEEEEcccCCCCcceEE-----------------------------
Q psy6409 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQ----------------------------- 977 (1832)
Q Consensus 928 ~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~-p~~v~~~~~~~~~~~i~q----------------------------- 977 (1832)
.+.. ....+|++-||+....-+|...+..+ ++.+.++....+.-.-.+
T Consensus 175 ~lI~--~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 252 (824)
T PF02399_consen 175 ELIR--NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTP 252 (824)
T ss_pred HHHH--hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCc
Confidence 2221 23578999999999888888886543 333333321110000000
Q ss_pred ---------EEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 978 ---------IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 978 ---------~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
.........-...|..-|. .+..+-||+.|...++.+++.....+..+..++|..+..+- +. =
T Consensus 253 ~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W 324 (824)
T PF02399_consen 253 KHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--W 324 (824)
T ss_pred CCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--c
Confidence 0001111112223333333 45668899999999999999999889999999887666522 22 3
Q ss_pred CCCcEEEecccccccCCCcCcC--EEEEc--CCC--CCHhHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVS--MVINY--DMA--KSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~--~VI~~--d~p--~s~~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
++++|+|=|.+...|+++.... -|.-| ... .+..+..|++||.-.-. ..+.++++...
T Consensus 325 ~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 325 KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 6789999999999999996543 23322 111 26667899999996554 35666665554
No 307
>KOG2340|consensus
Probab=98.85 E-value=3.6e-08 Score=117.60 Aligned_cols=366 Identities=17% Similarity=0.193 Sum_probs=230.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecC-CChH--HHHHHHHHHHHHhhchh-----hhhcc--------------ccCC
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAET-GSGK--TLAFLLPLLVWIQSLPK-----IARME--------------DADQ 804 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apT-GSGK--Tla~llpil~~i~~~~~-----~~~~~--------------~~~~ 804 (1832)
.-..+|+.|.+.+..+.+-+|++..-.| |.|+ +-+|.|-+|+++.+... ..+.. ..-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3467899999999999999997653222 3455 66789999988754211 11100 0113
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCC---------eEEEEEcC----------------------Cc--------h
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGI---------RTVLVVGG----------------------LS--------R 845 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i---------~v~~~~Gg----------------------~~--------~ 845 (1832)
.|+||||||+|+-|..+...+..++....- +...-++| .+ .
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999888876332211 01111222 00 0
Q ss_pred HHHHHHHh---cCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCC
Q psy6409 846 EEQGFRLR---LGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 916 (1832)
Q Consensus 846 ~~~~~~l~---~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~ 916 (1832)
......|. ...+||||+|=-|--++.+ ..-.|+.+.++|||-||-|+..++ ..+..|+..+.. .|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~---~P~k 448 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNL---QPSK 448 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhc---Cccc
Confidence 01111111 2489999999887555542 223688999999999998876544 455666666643 2332
Q ss_pred chhHHHHH--HHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc-------ccCCCCcceEEEEEE--c---
Q psy6409 917 EDAEDENK--LLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG-------SVGKPTERIEQIVYI--L--- 982 (1832)
Q Consensus 917 ~~~~~~~~--ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~-------~~~~~~~~i~q~~~~--~--- 982 (1832)
.+.....+ +...-.+.+-++|+++||+-..+....+...++.+-...... ........+.|.+.- +
T Consensus 449 ~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 449 QHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred ccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 22221111 111222344578999999998888877777776543222111 111111222222211 1
Q ss_pred --chhhHHHHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEe
Q psy6409 983 --SEQDKRKKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056 (1832)
Q Consensus 983 --~~~~k~~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVa 1056 (1832)
..+.++.....-+.- ....-+||++++--.-..+-.++.+.++..+.+|--.++..-..+-+.|-.|...||+-
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred ccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 123344433332221 22335799999998888999999998888888887666666677778899999999999
Q ss_pred ccc--ccccCCCcCcCEEEEcCCCCCHhHH---HHHhcccccCC----CCcEEEEEecCCCchHHHHHH
Q psy6409 1057 TDV--AGRGIDIKDVSMVINYDMAKSIEDY---THRIGRTGRAG----KEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1057 Tdv--~~rGlDip~v~~VI~~d~p~s~~~y---vQr~GRaGR~g----~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
|.= .=+--+|.+|.-||.|.+|..+.=| +.++||+.--| ..-.|.+++++-|..-+..+.
T Consensus 609 TER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 609 TERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred ehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 964 3466889999999999999987654 56777765433 225788999988866665554
No 308
>KOG0392|consensus
Probab=98.83 E-value=1.3e-07 Score=122.11 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHcC----------------CCCCEEEEEcccchHHHHHHHHHHcCC-cEE--EEcCCCCHHHHHHHHH
Q psy6409 984 EQDKRKKLMEVLNRG----------------VKKPVIIFVNQKKGADVLAKGLEKLGY-NAC--TLHGGKGQEQRELALN 1044 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~~----------------~~~~vIVFv~s~~~~~~l~~~L~~~g~-~v~--~lhg~~~~~~R~~il~ 1044 (1832)
...|+.+|.++|..+ .+.++||||.-+...+.+.+.|-+... .+. .+.|..++.+|.++.+
T Consensus 1308 hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~ 1387 (1549)
T KOG0392|consen 1308 HSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVE 1387 (1549)
T ss_pred hchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHH
Confidence 345778888887643 234799999999999999888865533 333 5889999999999999
Q ss_pred HHhCC-CCcEE-EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1045 SLKGG-SKDIL-VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1045 ~F~~G-~~~VL-VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
+|.++ .++|| .+|-|.+-|+|+-+.+.||.++=-.++-.=+|-+-||-|-|++- .++.|++..
T Consensus 1388 ~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1388 RFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 99998 88876 56689999999999999998888888888899999999999863 467777776
No 309
>KOG1002|consensus
Probab=98.81 E-value=4.1e-07 Score=107.41 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=110.4
Q ss_pred hHHHHHHHHHH----cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC-CCcE-EEeccc
Q psy6409 986 DKRKKLMEVLN----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVATDV 1059 (1832)
Q Consensus 986 ~k~~~L~~~l~----~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G-~~~V-LVaTdv 1059 (1832)
.|++.|.+-|. ....-+.|||..--.-.+.+.-.|.+.|+.++-+-|+|+...|..+++.|++. .+.| ||+--+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 45556655432 22334789998888888888888999999999999999999999999999875 4444 566677
Q ss_pred ccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCC--CcEEEEEecCCC--chHHHHHHHHHhcCCcccccccccccc
Q psy6409 1060 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDD--SHLFYDLKQMMISSPVTGRAGKEGLAV 1135 (1832)
Q Consensus 1060 ~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d--~~~~~~l~~~l~~~~~~~~~~~~~~~v 1135 (1832)
.+..+|+-..++|+.+|+-.+++--.|-..|.-|-|+ +=.++.|+-++. ...+.--++ .+..+.++++..++|+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeK--Ka~mihaTi~qde~Ai 777 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEK--KANMIHATIGQDEEAI 777 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHH--HhhhhhhhcCCcHHHH
Confidence 7888999999999999998887766665555555553 357788888763 222222111 2334567777777777
Q ss_pred cccccCC
Q psy6409 1136 SFCTKDD 1142 (1832)
Q Consensus 1136 ~~~~~~~ 1142 (1832)
.-++..|
T Consensus 778 ~kLt~eD 784 (791)
T KOG1002|consen 778 SKLTEED 784 (791)
T ss_pred HhcCHHH
Confidence 6554433
No 310
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.78 E-value=2.5e-08 Score=118.99 Aligned_cols=77 Identities=30% Similarity=0.328 Sum_probs=62.9
Q ss_pred ccCCCCChhhhh----hcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHH
Q psy6409 5 IGYAEPTPIQRQ----AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 80 (1832)
Q Consensus 5 ~~~~~~~p~Q~~----~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi 80 (1832)
|+|. |+|.|.+ ++..+..|..+++.||||+|||+|||+|+|.++...+.. ..+...+|.++|..+..|.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHH
Confidence 8888 5999999 566788999999999999999999999999776543211 1235789999999999998
Q ss_pred HHHHHhcC
Q psy6409 81 EEETNKFG 88 (1832)
Q Consensus 81 ~~~~~~~~ 88 (1832)
..++++..
T Consensus 78 i~~l~~~~ 85 (289)
T smart00488 78 LEELRKLM 85 (289)
T ss_pred HHHHHhcc
Confidence 88887764
No 311
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.78 E-value=2.5e-08 Score=118.99 Aligned_cols=77 Identities=30% Similarity=0.328 Sum_probs=62.9
Q ss_pred ccCCCCChhhhh----hcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHH
Q psy6409 5 IGYAEPTPIQRQ----AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 80 (1832)
Q Consensus 5 ~~~~~~~p~Q~~----~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi 80 (1832)
|+|. |+|.|.+ ++..+..|..+++.||||+|||+|||+|+|.++...+.. ..+...+|.++|..+..|.
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~------~~~~kvi~~t~T~~~~~q~ 77 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER------IQKIKLIYLSRTVSEIEKR 77 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc------ccccceeEEeccHHHHHHH
Confidence 8888 5999999 566788999999999999999999999999776543211 1235789999999999998
Q ss_pred HHHHHhcC
Q psy6409 81 EEETNKFG 88 (1832)
Q Consensus 81 ~~~~~~~~ 88 (1832)
..++++..
T Consensus 78 i~~l~~~~ 85 (289)
T smart00489 78 LEELRKLM 85 (289)
T ss_pred HHHHHhcc
Confidence 88887764
No 312
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.75 E-value=7.6e-08 Score=114.89 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
.|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...+. ...+.+++|.++|..+..|..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHH
Confidence 454 6999999544 45568899999999999999999999987643211 013458999999999999987
Q ss_pred HHHHHh
Q psy6409 823 EETNKF 828 (1832)
Q Consensus 823 ~~~~~~ 828 (1832)
..+++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00488 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 777765
No 313
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.75 E-value=7.6e-08 Score=114.89 Aligned_cols=75 Identities=31% Similarity=0.373 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHH----HHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~----~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
.|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...+. ...+.+++|.++|..+..|..
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i 78 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRL 78 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHH
Confidence 454 6999999544 45568899999999999999999999987643211 013458999999999999987
Q ss_pred HHHHHh
Q psy6409 823 EETNKF 828 (1832)
Q Consensus 823 ~~~~~~ 828 (1832)
..+++.
T Consensus 79 ~~l~~~ 84 (289)
T smart00489 79 EELRKL 84 (289)
T ss_pred HHHHhc
Confidence 777765
No 314
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.73 E-value=1.6e-08 Score=104.37 Aligned_cols=138 Identities=19% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
|+-.++-..+|+|||.-.+--++... ...+.++|||+|||.+|..+.+.++.. ++++....-+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~-----------i~~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREA-----------IKRRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHH-----------HHTT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--
T ss_pred CceeEEecCCCCCCcccccHHHHHHH-----------HHccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-
Confidence 44467889999999986444343321 135789999999999999988887653 33322111100
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHH
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK 924 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ 924 (1832)
....+.-|-|+|.+.+...+.+ ...+.++++||+||||.+ |. ..| ...+
T Consensus 68 ------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp------~sI-----------------A~rg 116 (148)
T PF07652_consen 68 ------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DP------TSI-----------------AARG 116 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SH------HHH-----------------HHHH
T ss_pred ------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CH------HHH-----------------hhhe
Confidence 1123466789999999888777 446789999999999942 21 111 1122
Q ss_pred HHHhhccccccceEEEEEecCChHHH
Q psy6409 925 LLANYNSKKKYRQTVMFTATMPPAVE 950 (1832)
Q Consensus 925 ll~~~~~~~~~~q~v~~SATl~~~v~ 950 (1832)
.+...... ....+|++|||.|....
T Consensus 117 ~l~~~~~~-g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 117 YLRELAES-GEAKVIFMTATPPGSED 141 (148)
T ss_dssp HHHHHHHT-TS-EEEEEESS-TT---
T ss_pred eHHHhhhc-cCeeEEEEeCCCCCCCC
Confidence 23333222 23568999999987654
No 315
>KOG4439|consensus
Probab=98.71 E-value=5.2e-07 Score=111.16 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=82.3
Q ss_pred cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhh--CCCCcEEE-EcccccccCCCCCCCEEEEeCCC
Q psy6409 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK--GGSKDILV-ATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1677 ~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~--~g~~~VLV-ATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
+++|...-......+...|...|+....+||.....+|..+++.|. +|..+|++ +=...+.|+|+-..+|+|..|+-
T Consensus 748 K~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH 827 (901)
T KOG4439|consen 748 KVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH 827 (901)
T ss_pred eeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc
Confidence 4444443344445566778888999999999999999999999995 45566654 55677899999999999999999
Q ss_pred CCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
+++.-=-|-.-|.-|.|++-.++++
T Consensus 828 WNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 828 WNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred cCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999987666554
No 316
>KOG1002|consensus
Probab=98.70 E-value=9e-07 Score=104.62 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=97.0
Q ss_pred hHHHHHHHHHH----hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC-CCcE-EEEccc
Q psy6409 1661 DKRKKLMEVLN----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG-SKDI-LVATDV 1734 (1832)
Q Consensus 1661 ~k~~~l~~~l~----~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g-~~~V-LVATdv 1734 (1832)
.|.++|.+-+. ....-+.|||..--.-.+.+.-.|.+.|+++.-+-|+|++..|...++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 34555554332 22345789998888888888888999999999999999999999999999865 4444 455667
Q ss_pred ccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC--ccEEEEEeeCCC
Q psy6409 1735 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDD 1783 (1832)
Q Consensus 1735 l~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~d 1783 (1832)
.+..+|+-..+.|+++|+=++++--.|-.-|.-|.|+ +=.++.|+-+..
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 7777899999999999998898888888788877764 567888888763
No 317
>KOG2340|consensus
Probab=98.66 E-value=4.8e-07 Score=108.29 Aligned_cols=365 Identities=18% Similarity=0.205 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCC-CchH--HHHHHHHHHHHHhhCch-----hhcc--------------cccCCCc
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAET-GSGK--TLAFLLPLLVWIQSLPK-----IARM--------------EDADQGP 1481 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApT-GSGK--Tla~~lpil~~l~~~p~-----~~~~--------------~~~~~~~ 1481 (1832)
..+|+.|.+.+..+.+-+|++..-.| +.|+ +-+|++-+|+++..... ..+. ...-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999998998654222 3455 56788888887653211 0110 0012358
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCC--CCeEE-------EEECC----------------------cch--------HH
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPL--GIRTV-------LVVGG----------------------LSR--------EE 1522 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~--g~~v~-------~l~gg----------------------~~~--------~~ 1522 (1832)
+||||||+|+-|..+...+..+.... |...+ .-++| ... ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 99999999999999988887762211 11001 01111 000 00
Q ss_pred HHHHh---hcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 1523 QGFRL---RLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 1593 (1832)
Q Consensus 1523 ~~~~l---~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~ 1593 (1832)
....| ....|||||+|=-|--++.+ ..-.++.+.++|||-||.|+..++ ..+..|++.+..........+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCCC
Confidence 00111 22589999999777666652 223588999999999998886654 345566666653332211111
Q ss_pred hhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE-EEEcc------cCCCCcceEEEEE---Ec----ch
Q psy6409 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGS------VGKPTERIEQIVY---IL----SE 1659 (1832)
Q Consensus 1594 ~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~-v~i~~------~~~~~~~i~q~~~---~~----~~ 1659 (1832)
-.....+..-.+.+-.+|+++||+--.+....+...++.+-.. +.... .......+.|.+. .- ..
T Consensus 454 -fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 454 -FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred -hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 0111111112233456799999998888777777666654221 11111 1111111222211 11 12
Q ss_pred hhHHHHHHHHHHhC----CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccc
Q psy6409 1660 QDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735 (1832)
Q Consensus 1660 ~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl 1735 (1832)
..+...+...+--. ...-+||+++|--.--.+-.+|....+.-..+|--.+...-..+-+.|-.|..+||+-|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 33444444433222 23347999999888888889998887776667665556666677788999999999999654
Q ss_pred --cccCCCCCCCEEEEeCCCCCHH---HHHHHhcccccCC----CccEEEEEeeCCChhHHHHH
Q psy6409 1736 --GRGIDIKDVSMVINYDMAKSIE---DYTHRIGRTGRAG----KEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1736 --~~GIDip~v~~VI~~d~P~s~~---~yiQRiGRaGR~g----~~G~ai~~~~~~d~~~~~~l 1790 (1832)
=+-.+|.+|..||.|.+|.++. +++.|+||+.--| ....|.++++.-|.--+..+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 4668999999999999999865 5578888875433 34678888888776554443
No 318
>KOG4439|consensus
Probab=98.66 E-value=3.6e-07 Score=112.49 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHh--CCCCcE-EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcc
Q psy6409 1014 DVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK--GGSKDI-LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090 (1832)
Q Consensus 1014 ~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~--~G~~~V-LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GR 1090 (1832)
..+...|...|+....+||.....+|..+++.|. .|..+| |++-...+.|||+-+.+|+|..|+-.++.-=.|-.-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 4455667778999999999999999999999995 344444 5666788999999999999999999999998999999
Q ss_pred cccCCCCcEEE
Q psy6409 1091 TGRAGKEGLAV 1101 (1832)
Q Consensus 1091 aGR~g~~G~ai 1101 (1832)
.-|.|+.-.++
T Consensus 840 IYR~GQkK~V~ 850 (901)
T KOG4439|consen 840 IYRMGQKKDVF 850 (901)
T ss_pred HHHhcccCceE
Confidence 99998764433
No 319
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.60 E-value=9.6e-07 Score=114.23 Aligned_cols=338 Identities=23% Similarity=0.279 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|..+|.-.- +.-...-|.-+-||=|||+++.+|+...- -.|..+.++...--||.--+.+...+.
T Consensus 80 ~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylna------------L~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNA------------LAGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHh------------cCCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 3444554443 33334468899999999999999996432 235567888888889988888888888
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHcc------ccccCCceeEEEecchhhh-cC-------
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENR------YLVLNQCTYIVLDEADRMI-DM------- 894 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~------~~~l~~~~~lViDEaH~l~-d~------- 894 (1832)
..+|+.+++...+++..+..... .|+|.++|-..|= |.+.-. ........|.|+||+|-++ |.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiI 223 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLII 223 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceee
Confidence 88999999999999876664443 5999999976652 222211 1134467899999999643 11
Q ss_pred -C---C----hHHHHHHHHhCCCCC-C---------------------------CCCCch--------------------
Q psy6409 895 -G---F----EPDVQKILEYMPVTN-L---------------------------KPDTED-------------------- 918 (1832)
Q Consensus 895 -g---f----~~~i~~Il~~l~~~~-~---------------------------~~~~~~-------------------- 918 (1832)
| . ...+..++..+.... . ..+..+
T Consensus 224 SG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D 303 (822)
T COG0653 224 SGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRD 303 (822)
T ss_pred ecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcC
Confidence 1 1 112222222111000 0 000000
Q ss_pred --------------------------hH-HHHHHHHhhc-cccc----------------cceEEEEEecCChHHHHHHH
Q psy6409 919 --------------------------AE-DENKLLANYN-SKKK----------------YRQTVMFTATMPPAVERLAR 954 (1832)
Q Consensus 919 --------------------------~~-~~~~ll~~~~-~~~~----------------~~q~v~~SATl~~~v~~~~~ 954 (1832)
.+ ..+.+.+.-. .-.+ +..+.+++.|.-.....|..
T Consensus 304 ~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~ 383 (822)
T COG0653 304 VDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDV 383 (822)
T ss_pred CeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhh
Confidence 00 0000110000 0011 12334455554444444444
Q ss_pred HhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 955 SYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
.|..+ +.+.+...+...+... ..+.....|...+++-+.. ..+.|+||-+.+.+..+.+++.|.+.|++..++.
T Consensus 384 iY~l~---vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLN 460 (822)
T COG0653 384 IYGLD---VVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLN 460 (822)
T ss_pred ccCCc---eeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeec
Confidence 44332 2222223333222221 2334556677666665543 3678999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC-----------EEEEcCCCCCHhHHHHHhcccccCCCCcEE
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS-----------MVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~-----------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
+.-...+=+.+-..-+.| -|-|||+.|+||-||---. +||--.--.|..-=.|-.||+||-|-+|.+
T Consensus 461 Ak~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 461 AKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh
Confidence 876644444444433344 4789999999999984222 344333233444445999999999988887
Q ss_pred EEEecCCC
Q psy6409 1101 VSFCTKDD 1108 (1832)
Q Consensus 1101 i~~~~~~d 1108 (1832)
-.|++-+|
T Consensus 539 ~F~lSleD 546 (822)
T COG0653 539 RFYLSLED 546 (822)
T ss_pred hhhhhhHH
Confidence 77666554
No 320
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.59 E-value=8.6e-07 Score=114.65 Aligned_cols=341 Identities=22% Similarity=0.274 Sum_probs=205.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|+ .|.. .|.+-.+.-...-|.-+.||-|||+++.+|+.... -.|..|.++.-.-=||.--..++
T Consensus 77 lg~-~~~d--VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylna------------L~gkgVhvVTvNdYLA~RDae~m 141 (822)
T COG0653 77 LGM-RHFD--VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNA------------LAGKGVHVVTVNDYLARRDAEWM 141 (822)
T ss_pred cCC-Chhh--HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHh------------cCCCCcEEeeehHHhhhhCHHHH
Confidence 344 3444 44455555556678999999999999999996322 23666888888888999888899
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhhcC----
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMIDM---- 1569 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll~~---- 1569 (1832)
..+...+|+.+.++..+.++.+..... .|||..+|-..|- +.++.+. .......+.|+||+|-++=.
T Consensus 142 ~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 142 GPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred HHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 999889999999999998877654443 4899999987662 3333221 23446889999999964310
Q ss_pred -----C---C----hHHHHHHHHhCCCCC-CC---------------------------CCCchhh--------------
Q psy6409 1570 -----G---F----EPDVQKILEYMPVTN-LK---------------------------PDTEDAE-------------- 1595 (1832)
Q Consensus 1570 -----g---f----~~~l~~Il~~l~~~~-~~---------------------------~~~~~~~-------------- 1595 (1832)
| . +..+..++..+.... +. ...+...
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 1 1 122222222111100 00 0000000
Q ss_pred --------------------------------h-HHHHHhhhc-c----------------ccCcceEEEEEccCChHHH
Q psy6409 1596 --------------------------------D-ENKLLANYN-S----------------KKKYRQTVMFTATMPPAVE 1625 (1832)
Q Consensus 1596 --------------------------------~-~~~l~~~~~-~----------------~~~~~q~v~~SATl~~~~~ 1625 (1832)
. -+.+.+.-. . .+-+..+.++|.|.-....
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 0 000000000 0 0111223345555555545
Q ss_pred HHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcE
Q psy6409 1626 RLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNA 1702 (1832)
Q Consensus 1626 ~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v 1702 (1832)
.+...|..+.. +.+...+...+... ..+.....|..+++.-+.. ..+.|+||-+.++...+.+...|.+.|++.
T Consensus 380 EF~~iY~l~vv---~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h 456 (822)
T COG0653 380 EFDVIYGLDVV---VIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPH 456 (822)
T ss_pred hhhhccCCcee---eccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCc
Confidence 55544443322 22333333332222 2233455666666555443 367899999999999999999999999998
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC-----------EEEEeCCCCCHHHHHHHhcccccCCC
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS-----------MVINYDMAKSIEDYTHRIGRTGRAGK 1771 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~-----------~VI~~d~P~s~~~yiQRiGRaGR~g~ 1771 (1832)
.++.+.-...+-+.+-+.-+.| -|-|||+.++||-||---. +||-..--.|-.-=-|-.||+||-|.
T Consensus 457 ~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 457 NVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred eeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 8888776655555554444444 3789999999999985222 33333222233333488999999999
Q ss_pred ccEEEEEeeCCC
Q psy6409 1772 EGLAVSFCTKDD 1783 (1832)
Q Consensus 1772 ~G~ai~~~~~~d 1783 (1832)
.|.+..|++-+|
T Consensus 535 pG~S~F~lSleD 546 (822)
T COG0653 535 PGSSRFYLSLED 546 (822)
T ss_pred cchhhhhhhhHH
Confidence 999988877654
No 321
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.59 E-value=4.2e-07 Score=109.92 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=80.1
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1429 IQRQAIPIGL-------------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1429 iQ~~ai~~il-------------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+|.+++.+++ ..+..|++..+|+|||+..+..+. ++.... .......+|||||. .+..|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~ 72 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQ 72 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhh
Confidence 5888887764 235789999999999998765554 332211 01112359999999 88899
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHH---ccccccCCceeEEEccchhhh
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~---~~~~~l~~v~llViDEaH~ll 1567 (1832)
+..++.+++.....++..+.|+..............+|+|+|.+.+..... ...+..-++++||+||+|.+-
T Consensus 73 W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 73 WKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred hhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 999999998655566766666652222222233468999999998871110 011222358999999999883
No 322
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.53 E-value=1e-06 Score=106.44 Aligned_cols=119 Identities=22% Similarity=0.268 Sum_probs=72.3
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+..|++-++|+|||..++..+. ++.... .......+|||||. .|..|+..++.+++.+..+++..+.|+...
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred CCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhhhhhhhcccccccccccccccccccc
Confidence 5689999999999988766554 322111 11112359999999 888999999999986556677766666522
Q ss_pred HHHHHHHhcCCceeecCHHHHHHHH---HccccccCCceeEEEecchhhh
Q psy6409 846 EEQGFRLRLGCEIVIATPGRLIDVL---ENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 846 ~~~~~~l~~~~~IlV~TP~rL~d~l---~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
...........+|+|+|.+.+.... ....+.--.+++||+||+|.+-
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT
T ss_pred ccccccccccceeeeccccccccccccccccccccccceeEEEecccccc
Confidence 2222223346899999999987110 0011222348999999999874
No 323
>KOG0386|consensus
Probab=98.53 E-value=4.9e-07 Score=115.51 Aligned_cols=334 Identities=19% Similarity=0.245 Sum_probs=199.0
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++.+||...+..+.+ +=|-|+.-++|-|||.. .+.++.|+.... ...|| -||+||+-.|.. +..+
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K-------~~~GP-~LvivPlstL~N-W~~E 462 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK-------QMQGP-FLIIVPLSTLVN-WSSE 462 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc-------ccCCC-eEEeccccccCC-chhh
Confidence 3778888888877664 24678888999999986 445555654432 23466 578899988876 5566
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHH---HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc--------
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-------- 893 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~---~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d-------- 893 (1832)
|.+++.. +..+.+. |...... ........+|+++|.+.++. .+..+.--++.|+||||.|+|-+
T Consensus 463 f~kWaPS--v~~i~Yk-Gtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~ 537 (1157)
T KOG0386|consen 463 FPKWAPS--VQKIQYK-GTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDT 537 (1157)
T ss_pred ccccccc--eeeeeee-CCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHH
Confidence 7666543 3333333 3331111 11222458999999987754 22223334678999999999753
Q ss_pred --CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhcc--------ccccceEEE--EEec-----------------
Q psy6409 894 --MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS--------KKKYRQTVM--FTAT----------------- 944 (1832)
Q Consensus 894 --~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~q~v~--~SAT----------------- 944 (1832)
..|....+.|+.-.|..+..|.-.. .+.-++..+.. ...+.+..+ ..+|
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWa--LLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWA--LLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHH--HHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 2344444444443333222111000 00000000000 000001111 0111
Q ss_pred -------------CChHHHHHH------------------------------------------HHhcCCCcEEEEcccC
Q psy6409 945 -------------MPPAVERLA------------------------------------------RSYLRRPATVYIGSVG 969 (1832)
Q Consensus 945 -------------l~~~v~~~~------------------------------------------~~~l~~p~~v~~~~~~ 969 (1832)
+|..++.+. +...+.|..+.
T Consensus 616 FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~----- 690 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA----- 690 (1157)
T ss_pred HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhh-----
Confidence 121111111 11111111110
Q ss_pred CCCcceEEE---EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 970 KPTERIEQI---VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 970 ~~~~~i~q~---~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
.....+.-. ...+....|+..|-.+|-. ..+++++.||.-..--..+..+|.-.++...-+.|....++|-..++
T Consensus 691 ~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~ 770 (1157)
T KOG0386|consen 691 NVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLE 770 (1157)
T ss_pred hhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHH
Confidence 000000000 0112234455555555543 35789999999988889999999999999999999999999999999
Q ss_pred HHhCCCC---cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1045 SLKGGSK---DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1045 ~F~~G~~---~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
.|..... ..|.+|-..+.|+|+-..+.||.||.-.++....|+--||-|-|..-.+-++.
T Consensus 771 ~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 771 IFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred HhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9986544 46889999999999999999999999999999999999999998775444433
No 324
>KOG0386|consensus
Probab=98.50 E-value=1e-06 Score=112.67 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC---cEEEEcccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK---DILVATDVA 1735 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~---~VLVATdvl 1735 (1832)
.|...|-.+|-+ ..++++|.||.-..--..+-.+|.-.++.-.-+.|....++|-..++.|..-.. ..|.+|...
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstrag 789 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAG 789 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeeccc
Confidence 344444444433 257899999999888888888998889999999999999999999999986543 367799999
Q ss_pred cccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1736 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1736 ~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+.|+|+...+.||.||.-+++....|+--||-|.|+.-.+-++..
T Consensus 790 glglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 790 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 999999999999999999999999999999999997765555544
No 325
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.49 E-value=7.7e-07 Score=92.06 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
|.=.++-..+|+|||--.+--++.... ..+.++|||+|||.++..+.+.++.. ++++. +.-..
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i-----------~~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~ 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAI-----------KRRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHH-----------HTT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHH-----------HccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee
Confidence 334578889999999864443432211 24788999999999999998888654 22221 11110
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
. ....+.-|-|+|-..+...+.+ ...+.++++||+||||.+
T Consensus 67 ~-----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 67 R-----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ---------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred c-----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 0 1123456788999988887766 556789999999999953
No 326
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.44 E-value=2.4e-06 Score=99.28 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=98.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
.|+ .|++.|.-++-.+..|+ |+...||=|||++..+|+..+.+ .|..|=|++..-.||..=++.+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------------~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------------QGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------------TSS-EEEEESSHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------------hcCCcEEEeccHHHhhccHHHH
Confidence 454 89999999998887776 99999999999999998875432 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~ 892 (1832)
..+...+|+.+.+++++.+..+..... .++|+++|...+. |.|.... .....+.++||||||.|+
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999998865433332 4789999999886 4443321 135678999999999865
No 327
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.43 E-value=3.3e-06 Score=98.24 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=98.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+ .|++.|.-++-.+..|+ |+...||-|||++..+|++.... .|..|=|++...-||..=+.++
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------------~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------------QGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------------TSS-EEEEESSHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------------hcCCcEEEeccHHHhhccHHHH
Confidence 565 89999999998787766 99999999999999888875443 4777999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHH-HHHHccc------cccCCceeEEEccchhhh
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~-~~l~~~~------~~l~~v~llViDEaH~ll 1567 (1832)
..+...+|+.+.+++++.+........ .++|+.+|...+. +.|+.+. .....+.++||||||.++
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999999988865432222 3789999998875 4554422 235678999999999765
No 328
>KOG0388|consensus
Probab=98.41 E-value=0.00013 Score=90.18 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc-EEEeccccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD-ILVATDVAG 1061 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~-VLVaTdv~~ 1061 (1832)
..|+..|-++|.. ..+.++|+|..--+..+.+-++|...++...-+.|.....+|..++..|....+- .|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 3455555555543 3567899999999999999999999999999999999999999999999876554 588999999
Q ss_pred ccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1062 rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
-|||+-+.+.||.||--.++..-.|-+.||-|-|.. -+++.+++..
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999998889999999998875 4567777765
No 329
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.39 E-value=2.1e-05 Score=107.58 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=167.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcch
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~ 1520 (1832)
+.-+|+=-||||||+.....+-. +... ...|.++||+-.++|-.|+.+.+..++....... ...+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~-l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARL-LLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHH-HHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 45888999999999986554432 3222 4688999999999999999999999864332211 22333
Q ss_pred HHHHHHhhcC-CcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhH
Q psy6409 1521 EEQGFRLRLG-CEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 1597 (1832)
Q Consensus 1521 ~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~ 1597 (1832)
..-...+..+ ..|||+|.++|...+.... ..-.+=-+||+||||+-- ++..-..+-..++
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-------------- 402 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-------------- 402 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc--------------
Confidence 3333334433 4899999999988886641 112223468899999642 2222222222222
Q ss_pred HHHHhhhccccCcceEEEEEccCChHHHHH-HHHhcCCCcEEEE-cccCCCCcceEEEEEEc------------------
Q psy6409 1598 NKLLANYNSKKKYRQTVMFTATMPPAVERL-ARSYLRRPATVYI-GSVGKPTERIEQIVYIL------------------ 1657 (1832)
Q Consensus 1598 ~~l~~~~~~~~~~~q~v~~SATl~~~~~~~-~~~~l~~p~~v~i-~~~~~~~~~i~q~~~~~------------------ 1657 (1832)
....++||+|+-..-... ....+......+. ...-.....+...+...
T Consensus 403 ------------~a~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~ 470 (962)
T COG0610 403 ------------KAIFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELD 470 (962)
T ss_pred ------------cceEEEeeCCccccccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhH
Confidence 256889998863222111 1111221111111 11000000000000000
Q ss_pred ------ch--hhH------------------HH---HHHHHHH--hCCCCcEEEEECchhHHHHHHHHHHHcC-------
Q psy6409 1658 ------SE--QDK------------------RK---KLMEVLN--RGVKKPVIIFVNQKKGADVLAKGLEKLG------- 1699 (1832)
Q Consensus 1658 ------~~--~~k------------------~~---~l~~~l~--~~~~~~vIVFv~s~~~a~~l~~~L~~~~------- 1699 (1832)
.. ..+ .. .+.+.+. .....++++.|+++.-|..+++.+....
T Consensus 471 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~ 550 (962)
T COG0610 471 ERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKE 550 (962)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhh
Confidence 00 000 00 0111111 1244577888888775555555443220
Q ss_pred ------------C----cEEEEcCCCCHHHHHHHHHH--hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1700 ------------Y----NACTLHGGKGQEQRELALNS--LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1700 ------------~----~v~~lHg~ls~~~R~~il~~--F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
+ .....|... ...+...... +.....++||-++.+-.|.|.|.++ ++-+|-|----..+|
T Consensus 551 ~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~Q 628 (962)
T COG0610 551 SLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQ 628 (962)
T ss_pred hhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHH
Confidence 0 000011111 2233344444 3567889999999999999999554 566777877788999
Q ss_pred HhcccccC--C--CccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1762 RIGRTGRA--G--KEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1762 RiGRaGR~--g--~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
-+-|+.|. + ..|..+.|+. -...+.+..+++.
T Consensus 629 AisRtNR~~~~~K~~G~IVDf~g--l~e~l~~Al~~Y~ 664 (962)
T COG0610 629 AISRTNRVFPGKKKFGLIVDFRG--LKEALKKALKLYS 664 (962)
T ss_pred HHHHhccCCCCCCCCcEEEECcc--hHHHHHHHHHHhh
Confidence 99999993 4 2377776666 3334444444333
No 330
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.37 E-value=2.8e-05 Score=108.61 Aligned_cols=123 Identities=22% Similarity=0.307 Sum_probs=103.8
Q ss_pred hHHHHHHHHH-Hh--CCCC--cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC--CCcEEEEcc
Q psy6409 1661 DKRKKLMEVL-NR--GVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATD 1733 (1832)
Q Consensus 1661 ~k~~~l~~~l-~~--~~~~--~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g--~~~VLVATd 1733 (1832)
.|...+.+++ .. .... ++|||++.......+...|...++....++|+++...|...++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666666666 22 2344 899999999999999999999998999999999999999999999986 444667778
Q ss_pred cccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccE--EEEEeeCCC
Q psy6409 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDD 1783 (1832)
Q Consensus 1734 vl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~--ai~~~~~~d 1783 (1832)
+.+.|+|+-..++||+||..+++....|.+.|+-|.|+... ++-|++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999887654 444455553
No 331
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.35 E-value=1.1e-05 Score=112.76 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=104.6
Q ss_pred hHHHHHHHHH-Hc--CCCC--CEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEecc
Q psy6409 986 DKRKKLMEVL-NR--GVKK--PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG--SKDILVATD 1058 (1832)
Q Consensus 986 ~k~~~L~~~l-~~--~~~~--~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G--~~~VLVaTd 1058 (1832)
.|...+.+++ .. ..+. ++|||+......+.+...|...++....++|+++...|..+++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5666666666 22 2344 899999999999999999999998999999999999999999999986 445677788
Q ss_pred cccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCc--EEEEEecCCC
Q psy6409 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKDD 1108 (1832)
Q Consensus 1059 v~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d 1108 (1832)
+++.|+|+-..++||.||...++....|...|+-|.|... .++.|++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999999999999999999999988764 4556666653
No 332
>KOG0388|consensus
Probab=98.25 E-value=3.6e-05 Score=94.75 Aligned_cols=122 Identities=21% Similarity=0.284 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc-EEEEcccccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD-ILVATDVAGR 1737 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~-VLVATdvl~~ 1737 (1832)
.|+..|-.+|.. ..++++|+|..--+..+.+-.+|...++.-.-+.|.....+|..++..|....+- .|.+|.+.+.
T Consensus 1028 gKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1028 GKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGL 1107 (1185)
T ss_pred cceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcc
Confidence 444455555543 3567899999998999999999999999999999999999999999999886654 5779999999
Q ss_pred cCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCcc--EEEEEeeCC
Q psy6409 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1782 (1832)
Q Consensus 1738 GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~ 1782 (1832)
|||+.+.+.||.||--++++-=.|-+-||-|.|+.- .++-+++..
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999998753 455556655
No 333
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.21 E-value=8.3e-05 Score=101.93 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=75.5
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~ 845 (1832)
+..+|.=-||||||++.+-.+- .+.. ....|.++||+-+++|-.|+...|..+........ .-.+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~---------~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~ 339 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLE---------LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAEST 339 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHh---------ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCH
Confidence 3589999999999997554442 2222 14678999999999999999999999865433211 22233
Q ss_pred HHHHHHHhcC-CceeecCHHHHHHHHHcc-c-cccCCceeEEEecchhh
Q psy6409 846 EEQGFRLRLG-CEIVIATPGRLIDVLENR-Y-LVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 846 ~~~~~~l~~~-~~IlV~TP~rL~d~l~~~-~-~~l~~~~~lViDEaH~l 891 (1832)
.+-...+..+ ..|+|+|-+++-..+... . ..-..=-+||+||||+-
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 3333344433 489999999997777554 1 11222347889999963
No 334
>KOG0921|consensus
Probab=98.08 E-value=1.5e-05 Score=100.55 Aligned_cols=326 Identities=22% Similarity=0.247 Sum_probs=182.2
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCeE
Q psy6409 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRT 1511 (1832)
Q Consensus 1433 ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~v 1511 (1832)
.+.++...+-+++-..||.|||.-+.--+|..+.... .....-+++-.|++--+.-+.+.+.+ -+...+-.|
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 3344455566888899999999998888887776532 22334477778888766665555432 222222111
Q ss_pred EEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC--CC
Q psy6409 1512 VLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL--KP 1589 (1832)
Q Consensus 1512 ~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~--~~ 1589 (1832)
|-...-+... .+.-..|..+|.|-++.++.+. +..+.++|+||.|.-.-. .+-+..|+.-|..+.- +.
T Consensus 459 ----gy~vRf~Sa~-prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 459 ----GYNVRFDSAT-PRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred ----cccccccccc-cccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhh
Confidence 1111111111 1112358899999999888874 456788999999942211 1122222222211100 00
Q ss_pred CC-chhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccC------------CCCc------ce
Q psy6409 1590 DT-EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG------------KPTE------RI 1650 (1832)
Q Consensus 1590 ~~-~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~------------~~~~------~i 1650 (1832)
.- +.......+... ....+++.+.++|+|-.. ++...+..+......... .+.. ++
T Consensus 529 ~lmsatIdTd~f~~~---f~~~p~~~~~grt~pvq~--F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~ 603 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNF---FSSIPDVTVHGRTFPVQS--FFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNI 603 (1282)
T ss_pred hhhhcccchhhhhhh---hccccceeeccccccHHH--HHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccc
Confidence 00 000011111111 224457788888887542 222222222111110000 0000 00
Q ss_pred ----------EEEEEEcchhhHHHHHHHHH-----HhCCCCcEEEEECchhHHHHHHHHHHHc-------CCcEEEEcCC
Q psy6409 1651 ----------EQIVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKL-------GYNACTLHGG 1708 (1832)
Q Consensus 1651 ----------~q~~~~~~~~~k~~~l~~~l-----~~~~~~~vIVFv~s~~~a~~l~~~L~~~-------~~~v~~lHg~ 1708 (1832)
........+..-...|.+.+ ...-.+-++||.+--...-.|...|... .+.+...|+.
T Consensus 604 ~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq 683 (1282)
T KOG0921|consen 604 LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQ 683 (1282)
T ss_pred ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhh
Confidence 00000001111111122221 1223456899998887777777776543 4677889999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------------------CCHHHHHHHhcccccCC
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------------------KSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------------------~s~~~yiQRiGRaGR~g 1770 (1832)
+...+...+.+....|..++++.|.+++.-+-|-++..||..+.- .+..+.+||.||+||.
T Consensus 684 ~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv- 762 (1282)
T KOG0921|consen 684 LTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV- 762 (1282)
T ss_pred cccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-
Confidence 998899999999999999999999999999988887777753321 2567889999999995
Q ss_pred CccEEEEEeeC
Q psy6409 1771 KEGLAVSFCTK 1781 (1832)
Q Consensus 1771 ~~G~ai~~~~~ 1781 (1832)
..|.|..++..
T Consensus 763 R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 763 RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccHH
Confidence 57888877765
No 335
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.05 E-value=7.8e-05 Score=94.90 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=60.2
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC--CCccEEEE-----------EeeCCChhHHHHH
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEGLAVS-----------FCTKDDSHLFYDL 1790 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~--g~~G~ai~-----------~~~~~d~~~~~~l 1790 (1832)
...+.+++-.+|-+|.|=|+|=.++-+....|..+=+|.+||+.|- +..|.-++ ++..+..+|...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999993 44554443 5556678888888
Q ss_pred HHHhhcC
Q psy6409 1791 KQMMISS 1797 (1832)
Q Consensus 1791 ~~~l~~~ 1797 (1832)
...+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766544
No 336
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.95 E-value=8.7e-05 Score=98.70 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccC--CCcc-------EEEEE-eeCCChhHHHHHHHHh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEG-------LAVSF-CTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~--g~~G-------~ai~~-~~~~d~~~~~~l~~~l 1794 (1832)
..+.+++-++|.+|.|.|++-.+..+.-..|...-.|.+||..|. ++.| .-+++ ++.+...|...|...+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 678999999999999999999999999889999999999999993 2222 23444 4445567888887776
Q ss_pred hc
Q psy6409 1795 IS 1796 (1832)
Q Consensus 1795 ~~ 1796 (1832)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
No 337
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.93 E-value=0.00011 Score=97.93 Aligned_cols=54 Identities=22% Similarity=0.143 Sum_probs=44.9
Q ss_pred hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 853 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 853 ~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
.....|+++||..|..-|..+.+.++.+..|||||||++.+..-...+..++..
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 345779999999999878888889999999999999999877666666666654
No 338
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.93 E-value=0.00018 Score=96.05 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=42.3
Q ss_pred cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1529 ~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
....|+++||..|..-+..+.+.+..|..|||||||++.+..-..-+-.++.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 3567999999999988888889999999999999999987655544555543
No 339
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.90 E-value=0.00012 Score=97.53 Aligned_cols=117 Identities=19% Similarity=0.153 Sum_probs=71.1
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH---------HhcCCCCCeEE
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN---------KFGTPLGIRTV 837 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~---------~~~~~~~i~v~ 837 (1832)
|+.+.++||+|||.+|+-.|+..... ....+.||+||+.+.-..+...+. .......+...
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~----------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQK----------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHH----------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 68999999999999999988765322 234679999999998877765544 11112224444
Q ss_pred EEEcCC-------chHHHHHHH--hc-----CCceeecCHHHHHHHHH-ccc----------c---ccCCc-eeEEEecc
Q psy6409 838 LVVGGL-------SREEQGFRL--RL-----GCEIVIATPGRLIDVLE-NRY----------L---VLNQC-TYIVLDEA 888 (1832)
Q Consensus 838 ~~~Gg~-------~~~~~~~~l--~~-----~~~IlV~TP~rL~d~l~-~~~----------~---~l~~~-~~lViDEa 888 (1832)
.+.++. +...+.... .. ..+|+|+|-++|..-.. +.. . .+... -+||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 111221111 11 47899999998864221 110 0 11111 37999999
Q ss_pred hhhhc
Q psy6409 889 DRMID 893 (1832)
Q Consensus 889 H~l~d 893 (1832)
|++-.
T Consensus 211 h~~~~ 215 (986)
T PRK15483 211 HRFPR 215 (986)
T ss_pred CCCCc
Confidence 98853
No 340
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.87 E-value=0.00027 Score=90.28 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccC--CCCcEEEE-----------EecCCCchHHHHH
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA--GKEGLAVS-----------FCTKDDSHLFYDL 1115 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~--g~~G~ai~-----------~~~~~d~~~~~~l 1115 (1832)
...+.|.+-.++-+|.|=|+|-.++-.....|..+=.|.+||+.|- ...|.-++ ++..++..|+..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999888999999999999993 33454443 5666677888888
Q ss_pred HHHHhcC
Q psy6409 1116 KQMMISS 1122 (1832)
Q Consensus 1116 ~~~l~~~ 1122 (1832)
.+-++.+
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766554
No 341
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.75 E-value=6e-05 Score=86.70 Aligned_cols=112 Identities=25% Similarity=0.305 Sum_probs=80.7
Q ss_pred CcchhHhhHhHHHHHhhcc-ccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCCccceEE-EEeCCcchHHHhHHhh
Q psy6409 35 SGKTLAFLLPLLVWIQSLP-KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV-LVVGGLSREEQGFRLR 112 (1832)
Q Consensus 35 sGKTlaf~lP~l~~~~~~~-~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~~~~~~~-~~~gg~~~~~q~~~l~ 112 (1832)
+..|+.-|-..|..+-... ...........|.+|||+..--=|.+|.+.++.|... +..++ ++..=.-..+|+..|+
T Consensus 96 ~~r~l~nL~~fLk~~~~~~~~l~~~~~~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~ 174 (252)
T PF14617_consen 96 KPRTLDNLPSFLKQFSPKKKKLSKKPKEKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLK 174 (252)
T ss_pred CCcccchHHHHHHHhccchhhhhhcccCCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHH
Confidence 4556655444444332110 1222223356799999999999999999999999522 12222 3334456899999999
Q ss_pred c-CccEEEcCchhhHHHhhhccccCCcceEEEEccc
Q psy6409 113 L-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 147 (1832)
Q Consensus 113 ~-~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEa 147 (1832)
. .++|.|||||||..++++|.+.++.+++||||=-
T Consensus 175 ~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s 210 (252)
T PF14617_consen 175 KTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWS 210 (252)
T ss_pred hCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCC
Confidence 5 6899999999999999999999999999999854
No 342
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.67 E-value=0.00011 Score=85.19 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
++++-|.+|+..++.... .+|.||.|+|||.+..- ++..+..... ......+.++|+++|+...+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999998 99999999999964333 3333211000 01135678999999999999999998887
No 343
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.59 E-value=0.00018 Score=83.37 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++++.|.+|+..++...+ .+|.+|.|+|||.+..- ++..+...-. ......+.++|+++|+..-++++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368999999999999998 99999999999965333 3322210000 01134678899999999999999998888
No 344
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.50 E-value=0.00053 Score=77.45 Aligned_cols=63 Identities=25% Similarity=0.280 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
++++-|.+|+..++.+. -+++.|+.|+|||.+. -.+...+. ..+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~-----------~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALE-----------AAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHH-----------HTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHH-----------hCCCeEEEECCcHHHHHHHHHh
Confidence 47889999999998654 3778899999999853 33443332 1368899999999988876555
No 345
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.45 E-value=0.00027 Score=77.66 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=73.6
Q ss_pred HHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcc--cccccCCCCC
Q psy6409 1668 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATD--VAGRGIDIKD 1743 (1832)
Q Consensus 1668 ~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~--~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATd--vl~~GIDip~ 1743 (1832)
+++.. .++.+|||++|....+.++..+..... ...++.. +......+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 3 ~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 44443 458899999999999999998876531 1223332 355788999999999999999998 9999999996
Q ss_pred --CCEEEEeCCCC----C--------------------------HHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1744 --VSMVINYDMAK----S--------------------------IEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1744 --v~~VI~~d~P~----s--------------------------~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
+..||...+|. + +....|-+||+-|..++--++++++.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 77899988873 1 12345889999997654333334443
No 346
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.33 E-value=0.0011 Score=74.92 Aligned_cols=112 Identities=23% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++++-|.+|+..++... -+++.+|.|+|||.+. -.+...+.. .+..+++++||...+..+.+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-----------~g~~v~~~apT~~Aa~~L~~~~-- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-----------AGKRVIGLAPTNKAAKELREKT-- 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-----------CCCeEEEECCcHHHHHHHHHhh--
Confidence 36889999999998654 3677799999999753 334444332 3678999999999888765552
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc----ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL----VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~----~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
++.+ .|-.+++........ .+...++||||||-.+. ...+..+
T Consensus 67 -----~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~l 113 (196)
T PF13604_consen 67 -----GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARL 113 (196)
T ss_dssp -----TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHH
T ss_pred -----Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHH
Confidence 1111 222222111111111 15566899999999553 4567777
Q ss_pred HHhCC
Q psy6409 1579 LEYMP 1583 (1832)
Q Consensus 1579 l~~l~ 1583 (1832)
+..++
T Consensus 114 l~~~~ 118 (196)
T PF13604_consen 114 LRLAK 118 (196)
T ss_dssp HHHS-
T ss_pred HHHHH
Confidence 77765
No 347
>KOG1802|consensus
Probab=97.25 E-value=0.001 Score=82.48 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=68.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1417 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1417 ~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+...++..++.-|..|+..++...=.|+++|.|+|||++..-.+++.+.. .+..+||.+|+.--++|+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----------~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----------HAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----------cCCceEEEcccchhHHHH
Confidence 455567889999999999999998889999999999999876555544432 355699999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEC
Q psy6409 1497 EEETNKFGTPLGIRTVLVVG 1516 (1832)
Q Consensus 1497 ~~~~~~~~~~~g~~v~~l~g 1516 (1832)
+..+.+- |++|+-+..
T Consensus 471 aeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 471 AEKIHKT----GLKVVRLCA 486 (935)
T ss_pred HHHHHhc----CceEeeeeh
Confidence 9988874 577776653
No 348
>KOG1802|consensus
Probab=97.24 E-value=0.0013 Score=81.53 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=67.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.+...|+.+++.-|..|+..+++..=.|++||.|+|||.+-.--+++.+ + ..+..+||.+|+...+.|+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~----------~~~~~VLvcApSNiAVDqL 470 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-R----------QHAGPVLVCAPSNIAVDQL 470 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-H----------hcCCceEEEcccchhHHHH
Confidence 5556788999999999999999999999999999999987655444433 2 1356799999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEE
Q psy6409 822 EEETNKFGTPLGIRTVLVV 840 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~ 840 (1832)
++.+.+- |++|+-+.
T Consensus 471 aeKIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 471 AEKIHKT----GLKVVRLC 485 (935)
T ss_pred HHHHHhc----CceEeeee
Confidence 9988875 56666554
No 349
>KOG1803|consensus
Probab=97.22 E-value=0.00049 Score=85.42 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+.+.+-|.+|+..+...++ .++.||.|+|||..-..-|.+.+. .+.++||.+||++-+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4577889999999999877 788899999999986666655442 46899999999999988888644
No 350
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.22 E-value=0.0018 Score=85.78 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+++.|..|+..++.. ..++|.||+|+|||.+..-.+.+.+ ..|.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~------------~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV------------KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH------------HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999986 5688999999999976443333322 1356899999999999999888876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 224 ~ 224 (637)
T TIGR00376 224 C 224 (637)
T ss_pred C
Confidence 3
No 351
>KOG4676|consensus
Probab=97.18 E-value=0.00026 Score=82.22 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=8.3
Q ss_pred eEEEEEccCcHHHH
Q psy6409 243 QTVMFTATMPPAVE 256 (1832)
Q Consensus 243 ~~~~~~~~~~~~~~ 256 (1832)
|.++-+-+|||..-
T Consensus 130 ~ailktP~Lp~~~~ 143 (479)
T KOG4676|consen 130 NAILKTPELPPQAA 143 (479)
T ss_pred cceecCCCCChHhh
Confidence 34555577777653
No 352
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.08 E-value=0.0026 Score=71.48 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
+...|+.|..++.+++...-+++.||.|||||+.++-.++..+.. ....+++|+-|+.+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----------TS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----------CCCcEEEEEecCCCC
Confidence 356788999999999988889999999999999999988877643 345578888887653
No 353
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.08 E-value=0.00094 Score=73.45 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred HHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC--cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecc--cccccCCCcC
Q psy6409 993 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY--NACTLHGGKGQEQRELALNSLKGGSKDILVATD--VAGRGIDIKD 1068 (1832)
Q Consensus 993 ~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~--~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTd--v~~rGlDip~ 1068 (1832)
+++. ..++.+|||++|....+.+.+.+...+. ...++.- ....+..+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 3 ~l~~-~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELIS-AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHH-CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHh-cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 4444 3457899999999999999998876531 1222332 356789999999999999999999 9999999996
Q ss_pred --cCEEEEcCCCC----C--------------------------HhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1069 --VSMVINYDMAK----S--------------------------IEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1069 --v~~VI~~d~p~----s--------------------------~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
+..||..++|. + +....|-+||+=|...+--++.++
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 66899888874 1 123468899999977653333333
No 354
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.08 E-value=0.0058 Score=71.63 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGL----------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il----------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
+.||+.++.. ..++..|.+++-.+. .+...++.-.||.||--...-.|+..+.+
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------- 89 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------- 89 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc----------
Confidence 4677655442 257888988876543 23568999999999986544445544432
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc---cccc--
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVL-- 1552 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~---~~~l-- 1552 (1832)
...++|++..+-.|-....+.|+.++.. .+.+..+.. ..... .......||++|-..|....... ...+
T Consensus 90 -Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~q 163 (303)
T PF13872_consen 90 -GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQ 163 (303)
T ss_pred -CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCc---CCCCCCCccchhHHHHHhHHhccCCccchHHH
Confidence 2446999999999999999999998644 333322221 11110 01123468999988887665321 1111
Q ss_pred ------CC-ceeEEEccchhhhcC
Q psy6409 1553 ------NQ-CTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1553 ------~~-v~llViDEaH~ll~~ 1569 (1832)
.+ =.+|||||||.+-..
T Consensus 164 l~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 164 LVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HHHHHhcCCCceEEeccchhcCCC
Confidence 11 268999999987554
No 355
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.07 E-value=0.0033 Score=83.18 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
..+++.|..|+..++.. ..+++.+|+|+|||.+..-.+...+. .+.++|+++||..-+.++...+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~------------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK------------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH------------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 56889999999999765443333322 356899999999999998888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 224 ~ 224 (637)
T TIGR00376 224 C 224 (637)
T ss_pred C
Confidence 4
No 356
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.00 E-value=0.0021 Score=79.70 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=63.6
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
-+||.|..|||||++++--+.. + .....+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l---------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-L---------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-h---------hccccCCceEEEEecchHHHHHHHHHhhhccc---------------
Confidence 3789999999999976543332 1 11235778999999999999888777664200
Q ss_pred HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 847 ~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
......+..|..++..+.........+++|||||||+|.+
T Consensus 58 -------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 -------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred -------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112234555555444432223567899999999999987
No 357
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.88 E-value=0.011 Score=67.05 Aligned_cols=152 Identities=20% Similarity=0.252 Sum_probs=98.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc---CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ---NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~---grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
++|+....|.+++=-+.. + --.++.|.+....+.+ |.|.+...-.|.|||.+ ++|++..+.. ..
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA----------dg 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA----------DG 69 (229)
T ss_pred CCCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc----------CC
Confidence 468878888888766543 3 3678999999988886 57999999999999987 7888876543 22
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcC-CCCCeEEE--EEcCCchHHH----HH----HHhcCCceeecCHHHHHHHHHcc
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGT-PLGIRTVL--VVGGLSREEQ----GF----RLRLGCEIVIATPGRLIDVLENR 873 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~-~~~i~v~~--~~Gg~~~~~~----~~----~l~~~~~IlV~TP~rL~d~l~~~ 873 (1832)
...+.+++| ++|..|....+..... -++-++.. ..-....+.. .. ......-|+++||+-++.+...+
T Consensus 70 ~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 70 SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 345666666 5799999888875432 23333322 2222222111 11 12235679999999886543221
Q ss_pred -------c-----------cccCCceeEEEecchhhhc
Q psy6409 874 -------Y-----------LVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 874 -------~-----------~~l~~~~~lViDEaH~l~d 893 (1832)
. ..+.....=|+||+|..+.
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 0233445679999998765
No 358
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.84 E-value=0.0036 Score=70.35 Aligned_cols=59 Identities=25% Similarity=0.230 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
...|+.|..++.+++...-+++.+|.|||||+.++-.++..+.. ....+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----------g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----------GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----------TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----------CCCcEEEEEecCCCC
Confidence 35688999999999987889999999999999998888877644 345678888887654
No 359
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.0049 Score=76.07 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=58.1
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH-hcCCCCCeEEEEEcCCchHHH-
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQ- 848 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~-~~~~~~i~v~~~~Gg~~~~~~- 848 (1832)
.+.||||||++.+-.||.+..+ ....-|+.|.......-....|.. +...+=..-...++|....-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 4789999999988777766532 233456666554443333222221 000000011111222111000
Q ss_pred ---HHHHhcCCceeecCHHHHHHHHHccc---c---ccCCceeE-EEecchhhhc
Q psy6409 849 ---GFRLRLGCEIVIATPGRLIDVLENRY---L---VLNQCTYI-VLDEADRMID 893 (1832)
Q Consensus 849 ---~~~l~~~~~IlV~TP~rL~d~l~~~~---~---~l~~~~~l-ViDEaH~l~d 893 (1832)
......+..|..+|.+.|...+.+.. + ++.+..+| +-|||||+-.
T Consensus 72 vn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 72 VNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00123367899999999987765432 2 44455544 4599999863
No 360
>PF13245 AAA_19: Part of AAA domain
Probab=96.80 E-value=0.0041 Score=58.58 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=40.9
Q ss_pred HHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 758 AIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 758 ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
|+..++. +.-++|.||.|||||...+--+...+.. .... +..++|++||+.++..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~-------~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA-------RADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH-------hcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444 3446669999999997655544443311 0112 678999999999999988887
No 361
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.79 E-value=0.0033 Score=77.91 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=62.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
++|.+..|||||++++-.+... .....+..++++++...|...+...+......
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l----------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL----------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh----------hccccCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 6888999999999865444322 11235778999999999999888777664200
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
......+..|..+...+.........+++|||||||+|..
T Consensus 58 ------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112334445444443332234567899999999999987
No 362
>KOG1803|consensus
Probab=96.78 E-value=0.0023 Score=79.75 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
..+.+-|.+|+..++..++ .++.+|.|+|||..-...|.+.+. .+.++||.+||.+-+.-+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk------------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK------------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH------------cCCeEEEEcCchHHHHHHHHHhc
Confidence 3678899999999998866 678899999999987776666554 36889999999998888877543
No 363
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.77 E-value=0.014 Score=66.20 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=96.6
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCC
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ---NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 1479 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~---g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~ 1479 (1832)
.+|+...-|.+++=-+. .++ -.+|.|.++...+.+ |.|.+..+-.|.|||.+ ++|++..+.. ..
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA----------dg 69 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA----------DG 69 (229)
T ss_pred CCCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc----------CC
Confidence 56777777777664443 233 689999999988885 57999999999999998 6888876543 22
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHH-hcCCCCCeEEEEE--CCcchHH----HHH----HhhcCCcEEEeCHHHHHHHHHcc
Q psy6409 1480 GPYAIIMAPTRELAQQIEEETNK-FGTPLGIRTVLVV--GGLSREE----QGF----RLRLGCEIVIATPGRLIDVLENR 1548 (1832)
Q Consensus 1480 ~~~vLiLaPtreLa~Qi~~~~~~-~~~~~g~~v~~l~--gg~~~~~----~~~----~l~~~~~IiVaTP~rl~~~l~~~ 1548 (1832)
...|.+++| ++|..|....+.. ++.-++-++..+. -...... ... .......|+++||+.+..+.-.+
T Consensus 70 ~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~ 148 (229)
T PF12340_consen 70 SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKG 148 (229)
T ss_pred CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHH
Confidence 356777777 5799998888865 4433444443322 1111111 111 12234569999999887553211
Q ss_pred -------c-----------cccCCceeEEEccchhhhc
Q psy6409 1549 -------Y-----------LVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1549 -------~-----------~~l~~v~llViDEaH~ll~ 1568 (1832)
. -.+.....=|+||+|.++.
T Consensus 149 le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 149 LERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1 0133445568999997664
No 364
>PRK10536 hypothetical protein; Provisional
Probab=96.61 E-value=0.0053 Score=70.88 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=45.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.++...+..|...+..+.++..+++.||+|+|||+.+....+..+.. ..-.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----------CCeeEEEEeCCCCC
Confidence 46777889999999999888889999999999999877766654421 12345666667654
No 365
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.60 E-value=0.017 Score=77.71 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=48.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
.++ .+++-|.+|+..+..++-+++.|+.|+|||.+. -.++..+.. ......+++++||-..|..+.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~---------~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEE---------LGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHH---------cCCCceEEEEeCchHHHHHHHH
Confidence 454 799999999999999899999999999999853 223332211 0112568889999888875443
No 366
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.60 E-value=0.002 Score=84.39 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.6
Q ss_pred HHHHHHh
Q psy6409 822 EEETNKF 828 (1832)
Q Consensus 822 ~~~~~~~ 828 (1832)
.+.|..+
T Consensus 313 ~~~f~~~ 319 (509)
T TIGR01642 313 KELLESF 319 (509)
T ss_pred HHHHHhc
Confidence 3333333
No 367
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.55 E-value=0.019 Score=75.27 Aligned_cols=131 Identities=22% Similarity=0.234 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
.+.|+.|+-.++.++-+++.|+.|+|||.+..- ++..+... .......+++++||.-.|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~-------~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQL-------ADGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHh-------cCCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 589999999999999999999999999986322 22222111 0112457899999999999888877665443
Q ss_pred CCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 832 ~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
+++. . . +......-..|--+|+..... .....-.+++||||||- |+| .+.+..++.
T Consensus 226 ~~~~-----~------~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~ 287 (615)
T PRK10875 226 LPLT-----D------E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLID 287 (615)
T ss_pred cccc-----h------h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHH
Confidence 3321 0 0 000111123343333322111 01123356899999999 544 345556666
Q ss_pred hCC
Q psy6409 906 YMP 908 (1832)
Q Consensus 906 ~l~ 908 (1832)
.++
T Consensus 288 al~ 290 (615)
T PRK10875 288 ALP 290 (615)
T ss_pred hcc
Confidence 664
No 368
>KOG2888|consensus
Probab=96.46 E-value=0.0015 Score=74.07 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=13.2
Q ss_pred ccHHHHHHHHHHHHhcCC
Q psy6409 72 PTRELAQQIEEETNKFGT 89 (1832)
Q Consensus 72 PtreLa~qi~~~~~~~~~ 89 (1832)
--.|+.-+|+.+++.+-+
T Consensus 81 tyhevideIyyqVkHvEP 98 (453)
T KOG2888|consen 81 TYHEVIDEIYYQVKHVEP 98 (453)
T ss_pred hHHHHHHHHHHHHhccCc
Confidence 346888888888877643
No 369
>PF13245 AAA_19: Part of AAA domain
Probab=96.45 E-value=0.011 Score=55.87 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=40.8
Q ss_pred HHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1433 AIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1433 ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
|+...+.+.+ +++.+|.|||||...+-.+...+.. .... +..++|++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~-------~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAA-------RADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHH-------hcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 5569999999997655555444321 0112 678999999999999988877
No 370
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.43 E-value=0.027 Score=73.78 Aligned_cols=131 Identities=24% Similarity=0.243 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC
Q psy6409 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 753 ~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~ 832 (1832)
+.|+.|+..++.++-+++.|+.|+|||.+..- ++..+.... ....+.++++++||--.|..+.+.+......+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999986322 322222110 01123679999999998888877776543332
Q ss_pred CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc------cccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~------~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
+.. . .+.....+-..|-.+|+..... ..-..-.+++||||||= |++ .+.+..|+..
T Consensus 221 ~~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~a 282 (586)
T TIGR01447 221 AAA-----------E---ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKA 282 (586)
T ss_pred ccc-----------h---hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHh
Confidence 211 0 0000111223444444322110 01123357999999998 444 3455566666
Q ss_pred CC
Q psy6409 907 MP 908 (1832)
Q Consensus 907 l~ 908 (1832)
++
T Consensus 283 l~ 284 (586)
T TIGR01447 283 LP 284 (586)
T ss_pred cC
Confidence 54
No 371
>KOG4676|consensus
Probab=96.41 E-value=0.0014 Score=76.46 Aligned_cols=12 Identities=25% Similarity=0.135 Sum_probs=6.0
Q ss_pred ccccCCCCCchh
Q psy6409 213 MPVTNLKPDTED 224 (1832)
Q Consensus 213 ~~~~~~~~~~~~ 224 (1832)
+|-..||+-+++
T Consensus 128 ~p~ailktP~Lp 139 (479)
T KOG4676|consen 128 SPNAILKTPELP 139 (479)
T ss_pred CccceecCCCCC
Confidence 455555554444
No 372
>KOG0391|consensus
Probab=96.40 E-value=0.017 Score=75.75 Aligned_cols=119 Identities=26% Similarity=0.364 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEecccc
Q psy6409 985 QDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVA 1060 (1832)
Q Consensus 985 ~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~--~~VLVaTdv~ 1060 (1832)
..|+..|.-+|.. ..+.++|||+.-.+..+.|-.+|..+|+-..-+.|...-++|+..+++|.... +..+++|-..
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 3455555444443 46789999999999999999999999999999999999999999999997543 3467889999
Q ss_pred cccCCCcCcCEEEEcCCCCCH------hHHHHHhcccccCCCCcEEEEEecCC
Q psy6409 1061 GRGIDIKDVSMVINYDMAKSI------EDYTHRIGRTGRAGKEGLAVSFCTKD 1107 (1832)
Q Consensus 1061 ~rGlDip~v~~VI~~d~p~s~------~~yvQr~GRaGR~g~~G~ai~~~~~~ 1107 (1832)
+.|||+-+.+.||.||--.++ .+..||||+| ++=..+.|++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt----RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT----RDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc----cceEEEEeeccc
Confidence 999999999999999987654 4566777776 245677788776
No 373
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.051 Score=67.56 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=58.7
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCC----CeEEEEECCcchH
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSRE 1521 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g----~~v~~l~gg~~~~ 1521 (1832)
.+.||||||++..-.||.++.+ ....-|+.|..-..+.-. ...|..... +.-.+.++|....
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----------gyr~flffvnq~nilekt---~~nftd~~s~kylf~e~i~~~d~~i~ 68 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----------GYRNFLFFVNQANILEKT---KLNFTDSVSSKYLFSENININDENIE 68 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----------chhhEEEEecchhHHHHH---HhhcccchhhhHhhhhhhhcCCceee
Confidence 5789999999877777766533 334567777754444332 222211110 0011111221111
Q ss_pred HH----HHHhhcCCcEEEeCHHHHHHHHHcc---cc---ccCCceeE-EEccchhhhc
Q psy6409 1522 EQ----GFRLRLGCEIVIATPGRLIDVLENR---YL---VLNQCTYI-VLDEADRMID 1568 (1832)
Q Consensus 1522 ~~----~~~l~~~~~IiVaTP~rl~~~l~~~---~~---~l~~v~ll-ViDEaH~ll~ 1568 (1832)
.. ......+..|+++|.+.|...+.+. .+ .+.+..+| +-|||||+-.
T Consensus 69 ikkvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 69 IKKVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred eeeecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00 0012335789999999998777542 22 34455554 5599999854
No 374
>PRK10536 hypothetical protein; Provisional
Probab=96.33 E-value=0.035 Score=64.29 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=44.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.++...+..|...+.++.+...+++.+|+|+|||+.+....+..+.. ....+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----------~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----------KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----------CCeeEEEEeCCCCC
Confidence 34556788999999999888889999999999999877666644422 12345666666654
No 375
>KOG1805|consensus
Probab=96.27 E-value=0.014 Score=76.24 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=89.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+-....+.|.+.+. -+..++.-|++|+-.++..+| .+|.|=.|+|||......|- .+. ..|.+
T Consensus 652 ~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIk-iL~-----------~~gkk 715 (1100)
T KOG1805|consen 652 DALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIK-ILV-----------ALGKK 715 (1100)
T ss_pred cccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHH-HHH-----------HcCCe
Confidence 33344566666664 246789999999999999887 78889999999986433221 111 24889
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH-----------------HHhcCCceeecCHHHHHHHH
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF-----------------RLRLGCEIVIATPGRLIDVL 870 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~-----------------~l~~~~~IlV~TP~rL~d~l 870 (1832)
+|..+-|...+.-+.-.++.+ ++...-+-.+.....+.. .....+.||.+|-=-+
T Consensus 716 VLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi---- 787 (1100)
T KOG1805|consen 716 VLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI---- 787 (1100)
T ss_pred EEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----
Confidence 999999998888877777665 333222222222222211 2223467777773222
Q ss_pred HccccccCCceeEEEecchhhh
Q psy6409 871 ENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 871 ~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
....+...+++|.|||||-.++
T Consensus 788 ~~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 788 NHPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CchhhhccccCEEEEccccccc
Confidence 2223456679999999999765
No 376
>KOG0391|consensus
Probab=96.26 E-value=0.027 Score=74.00 Aligned_cols=122 Identities=23% Similarity=0.296 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCC--CcEEEEccccc
Q psy6409 1661 DKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAG 1736 (1832)
Q Consensus 1661 ~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~--~~VLVATdvl~ 1736 (1832)
.|+..|.-+|.. ..++++|||..-.+..+.|-.+|.-+|+--.-+.|..+-++|...+++|.... ...+.+|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 455555555543 36789999999999999999999999999999999999999999999997543 35677899999
Q ss_pred ccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCC--ccEEEEEeeCC
Q psy6409 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD 1782 (1832)
Q Consensus 1737 ~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~ 1782 (1832)
.|||+-+.+.||.||--+|+..=-|---|+-|.|+ .=..+-|++..
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999999999999998876644443333333333 23444455554
No 377
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.21 E-value=0.041 Score=64.76 Aligned_cols=141 Identities=19% Similarity=0.166 Sum_probs=87.2
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc----------CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ----------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 732 ~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----------grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
.+.||+.+... | .++..|-+++-.+-+ ..-.++--.||.||.-...--|+....
T Consensus 25 ~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l---------- 88 (303)
T PF13872_consen 25 RLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL---------- 88 (303)
T ss_pred ccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH----------
Confidence 34677765542 3 468889888866542 123666668999998765544554432
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc---ccccC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR---YLVLN 878 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~---~~~l~ 878 (1832)
....++|++..+..|-....+.++.++.. .+.+..+..- ... ......-.||.+|...|...-..+ ...++
T Consensus 89 -~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ 162 (303)
T PF13872_consen 89 -RGRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLD 162 (303)
T ss_pred -cCCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCccchHH
Confidence 12447999999999999999999988654 3333333221 100 001124568999998887664321 11111
Q ss_pred ---------CceeEEEecchhhhcC
Q psy6409 879 ---------QCTYIVLDEADRMIDM 894 (1832)
Q Consensus 879 ---------~~~~lViDEaH~l~d~ 894 (1832)
.=.+|||||||.+-+.
T Consensus 163 ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 163 QLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HHHHHHhcCCCceEEeccchhcCCC
Confidence 1248999999987654
No 378
>KOG1805|consensus
Probab=96.16 E-value=0.019 Score=75.01 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=89.8
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+..-....+.|.+.+. -+..++.-|++|+-.++..+| .+|.+-.|+|||......+-..+ ..|
T Consensus 650 f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~------------~~g 713 (1100)
T KOG1805|consen 650 FVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV------------ALG 713 (1100)
T ss_pred hhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH------------HcC
Confidence 3333344566666664 235788999999999998876 68888999999976443332211 147
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH-----------------HHhhcCCcEEEeCHHHHHH
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-----------------FRLRLGCEIVIATPGRLID 1543 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~-----------------~~l~~~~~IiVaTP~rl~~ 1543 (1832)
.+||..+-|..-++-+.-.++.++ +..+-+..+.....+. ......+.||.+|-=-+.
T Consensus 714 kkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~- 788 (1100)
T KOG1805|consen 714 KKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN- 788 (1100)
T ss_pred CeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC-
Confidence 889999999988888877777763 3333333222222111 122234678888732221
Q ss_pred HHHccccccCCceeEEEccchhhh
Q psy6409 1544 VLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1544 ~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
...+...+++|.|||||-.+.
T Consensus 789 ---~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 789 ---HPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ---chhhhccccCEEEEccccccc
Confidence 222445679999999998654
No 379
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.14 E-value=0.043 Score=74.04 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=48.5
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
..++ .+++-|.+|+..+..++-+++.++.|+|||.+. -.++..+... .....+++++||-.-|..+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHHH
Confidence 3454 789999999999998888999999999999854 2333333220 11156888999988776543
No 380
>KOG0151|consensus
Probab=96.13 E-value=0.0035 Score=78.11 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred cccCCCCChhhhhhcccccC---------CCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccH
Q psy6409 4 KIGYAEPTPIQRQAIPIGLQ---------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 74 (1832)
Q Consensus 4 ~~~~~~~~p~Q~~~ip~~l~---------g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~Ptr 74 (1832)
|+||..+-|+=..+|++... +-.+.-.|++|--| .||-. -+......+-+..||++||-
T Consensus 250 K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p~~----~~pn~--------N~e~~~~edv~~i~Vvip~d 317 (877)
T KOG0151|consen 250 KLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGPPK----SLPNQ--------NAELVNTEDVEDILVVIPTD 317 (877)
T ss_pred eeccccccccCCccccCCChhhhccCCCCccCCcccCCCCccc----cCCCc--------cccccCcCCccceeEecCch
Confidence 68999887777777765443 33444445555422 22211 11112224556788999999
Q ss_pred HHHHHHHHHHHhc
Q psy6409 75 ELAQQIEEETNKF 87 (1832)
Q Consensus 75 eLa~qi~~~~~~~ 87 (1832)
+-..++.+.+..|
T Consensus 318 ~~L~~vidrM~~f 330 (877)
T KOG0151|consen 318 RHLLMVIDRMAEF 330 (877)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765555
No 381
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.10 E-value=0.043 Score=75.21 Aligned_cols=64 Identities=20% Similarity=0.053 Sum_probs=47.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
..|+ .+++-|.+|+..++.+++ +++.|+.|+|||.+ +-.+...+. ..|..++.++||--.|..+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e-----------~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE-----------AAGYEVRGAALSGIAAENL 406 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH-----------HcCCeEEEecCcHHHHHHH
Confidence 3454 699999999999998665 78999999999985 333333221 2477899999998766543
No 382
>KOG1132|consensus
Probab=96.08 E-value=0.033 Score=72.45 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=54.0
Q ss_pred CCcHHHHHHHHHHHc----CCcEEEEecCCChHHHHHHHHHHHHHhhch----h----hhh--------c--------cc
Q psy6409 750 EPTPIQRQAIPIGLQ----NRDIIGVAETGSGKTLAFLLPLLVWIQSLP----K----IAR--------M--------ED 801 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~----grdvIv~apTGSGKTla~llpil~~i~~~~----~----~~~--------~--------~~ 801 (1832)
+|+|.|...+..++. ..+.++-.|||+|||++-+-..|.+...+. . ... . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999877766654 578999999999999987766665543221 0 000 0 00
Q ss_pred ------cCCCcEEEEEccchhHHHHHHHHHHHhcCC
Q psy6409 802 ------ADQGPYAIIMAPTRELAQQIEEETNKFGTP 831 (1832)
Q Consensus 802 ------~~~~~~~LilaPtreLa~Qi~~~~~~~~~~ 831 (1832)
...-|++.|-.-|..=..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 012466777777777778888888876443
No 383
>KOG1132|consensus
Probab=96.02 E-value=0.036 Score=72.06 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCc----h-hhcccc-------------------
Q psy6409 1425 EPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLP----K-IARMED------------------- 1476 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p----~-~~~~~~------------------- 1476 (1832)
+|+|.|...+..++ ...+.++-.|||+|||++.+-..|.+...+. . ...+..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 78999998877666 4578999999999999987666665543322 0 000000
Q ss_pred c------CCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1477 A------DQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1477 ~------~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
. ..-|++.|-.-|..=..|+.+++++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 11355666666777778898998887543
No 384
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.97 E-value=0.056 Score=71.05 Aligned_cols=131 Identities=23% Similarity=0.244 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCC
Q psy6409 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506 (1832)
Q Consensus 1427 tpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~ 1506 (1832)
.+.|..|+-..+..+-+++.++.|+|||.+..- ++..+.... ......+++.+||-.-|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~-------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA-------DGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc-------CCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 589999999999999999999999999976322 222222210 112457889999998888877776554332
Q ss_pred CCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1507 ~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
++. +.. +......-..|-.+|+..... ..-+.-.+++||||||- |++ .+.+..++.
T Consensus 226 ~~~---------~~~-----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~ 287 (615)
T PRK10875 226 LPL---------TDE-----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLID 287 (615)
T ss_pred ccc---------chh-----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHH
Confidence 221 000 000111123444444332211 11123356899999999 443 455666777
Q ss_pred hCC
Q psy6409 1581 YMP 1583 (1832)
Q Consensus 1581 ~l~ 1583 (1832)
.++
T Consensus 288 al~ 290 (615)
T PRK10875 288 ALP 290 (615)
T ss_pred hcc
Confidence 665
No 385
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.13 Score=63.95 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE-EEEc-cchhHHHHHHHHHHHhcCCCCCeEEEEEcC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMA-PTRELAQQIEEETNKFGTPLGIRTVLVVGG 842 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~-Lila-PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg 842 (1832)
++.++++||||+|||.+..--+..+... ....+.++ ++-+ +.|.-|..+ ++.++..+|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~--------~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~---- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGIN--------SDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA---- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh--------hccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe----
Confidence 3568999999999998765433322111 00123333 3333 445555543 44444445554322
Q ss_pred CchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 843 ~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+.++..+...+. .+..+++|+||++.++.
T Consensus 239 -----------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 239 -----------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSP 267 (388)
T ss_pred -----------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCc
Confidence 223444434333 24678999999999765
No 386
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.84 E-value=0.082 Score=69.38 Aligned_cols=131 Identities=23% Similarity=0.237 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC
Q psy6409 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 1507 (1832)
Q Consensus 1428 piQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~ 1507 (1832)
+.|..|+..++.++-+++.++.|+|||.+..- ++..+.... ....++++++.+||-.-|..+.+.+......+
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l 220 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVKNL 220 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhccc
Confidence 78999999999999999999999999986322 222222110 01113579999999988888777665543222
Q ss_pred CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc------cccccCCceeEEEccchhhhcCCChHHHHHHHHh
Q psy6409 1508 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN------RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581 (1832)
Q Consensus 1508 g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~------~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~ 1581 (1832)
+.. . . ......+-..|-.+++..... ..-+.-.+++||||||= |++ .+.+..++..
T Consensus 221 ~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~a 282 (586)
T TIGR01447 221 AAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKA 282 (586)
T ss_pred ccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHh
Confidence 210 0 0 000111223454444433211 01123367999999998 443 3456667776
Q ss_pred CC
Q psy6409 1582 MP 1583 (1832)
Q Consensus 1582 l~ 1583 (1832)
++
T Consensus 283 l~ 284 (586)
T TIGR01447 283 LP 284 (586)
T ss_pred cC
Confidence 65
No 387
>PRK06526 transposase; Provisional
Probab=95.84 E-value=0.056 Score=63.52 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.2
Q ss_pred HcCCcEEEEecCCChHHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~ll 784 (1832)
-.+.+++++||+|+|||..+.-
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHH
Confidence 3578999999999999986544
No 388
>KOG1015|consensus
Probab=95.78 E-value=0.024 Score=73.01 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHH
Q psy6409 1661 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL----------------------GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~----------------------~~~v~~lHg~ls~~~R~~ 1716 (1832)
.|...|+++|... -+.++|||..|..+.+.+-.+|... |..-.-+.|..+...|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4555677777643 5678999999999999888888642 334456788899999999
Q ss_pred HHHHhhCCC----CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEE
Q psy6409 1717 ALNSLKGGS----KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778 (1832)
Q Consensus 1717 il~~F~~g~----~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~ 1778 (1832)
..+.|.+-. --.||+|.+.+.|||+-+.+-||.||..+++.-=+|-|=|+-|+|+.--+++|
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999997532 23799999999999999999999999999999999999999999987766665
No 389
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.76 E-value=0.013 Score=67.82 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=46.3
Q ss_pred HHhhccceecCCCCCCcccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHH
Q psy6409 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788 (1832)
Q Consensus 710 ~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~ 788 (1832)
|.+.-+...--.-+|..+.+|+++++|+-+.+.+.. .|. ++|.||||||||.. +-.|+.
T Consensus 88 f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId 147 (353)
T COG2805 88 FKQRGGYALVLRLIPSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMID 147 (353)
T ss_pred hhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHH
Confidence 333333333334689999999999999988886543 465 89999999999976 556777
Q ss_pred HHhh
Q psy6409 789 WIQS 792 (1832)
Q Consensus 789 ~i~~ 792 (1832)
+|.+
T Consensus 148 ~iN~ 151 (353)
T COG2805 148 YINK 151 (353)
T ss_pred HHhc
Confidence 7744
No 390
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.75 E-value=0.052 Score=73.49 Aligned_cols=62 Identities=16% Similarity=0.063 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
..+++-|.+|+..++.+ +-+++.|+.|+|||.+. -.++..+. ..|..+++++||--.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~-----------~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWE-----------AAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHH-----------hCCCeEEEEeCcHHHHHHHH
Confidence 35899999999999874 66899999999999752 22332221 23678999999977666543
No 391
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.70 E-value=0.073 Score=55.65 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=13.6
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-++++||+|+|||.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHH
Confidence 45689999999999986443
No 392
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.66 E-value=0.058 Score=74.01 Aligned_cols=63 Identities=21% Similarity=0.063 Sum_probs=47.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.|+ .+++-|.+|+..++.+.+ +++.++.|+|||.+ +-++...+.. .|..|+.++||---|..+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEecCcHHHHHHH
Confidence 455 799999999999998765 68889999999986 3334433322 477899999997766543
No 393
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.65 E-value=0.024 Score=68.97 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
+|+-|.+++.. ...+++|.|+.|||||.+.+--++..+... ......+|+|++|+..|.++...+...+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--------~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--------GVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--------SSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc--------cCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999887 677899999999999998766665544321 12345699999999999999999888533
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecch
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 889 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH 889 (1832)
..... ......-.........+-|+|-..+...+.+...... .-.+-++|+..
T Consensus 71 ~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21100 0000011112223467889998877765544332222 22567777777
No 394
>KOG2888|consensus
Probab=95.47 E-value=0.011 Score=67.44 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=13.3
Q ss_pred ccCcH-HHHHHHHHHhcCCeEEEE
Q psy6409 249 ATMPP-AVERLARSYLRRPATVYI 271 (1832)
Q Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~~ 271 (1832)
.|-|| ++----|.||-|.-.|++
T Consensus 167 Ytqpp~dLw~WyEpyldDdeeidp 190 (453)
T KOG2888|consen 167 YTQPPADLWDWYEPYLDDDEEIDP 190 (453)
T ss_pred ecCChhHHHHHhhhhccchhhcCC
Confidence 34433 455556667777666666
No 395
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.43 E-value=0.027 Score=65.25 Aligned_cols=87 Identities=25% Similarity=0.289 Sum_probs=67.6
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCC-chHHHHHHHhc-CCceeecCHHHHHHHHHccccccCC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL-SREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~-~~~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
....|.+|||+..=-=|..+.+.++.+.. -+..|+-+..-+ ...+|...+.. .++|.||||+||..++..+.+.++.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34678999999987778888888877631 123444444443 56777777764 5899999999999999999999999
Q ss_pred ceeEEEecch
Q psy6409 880 CTYIVLDEAD 889 (1832)
Q Consensus 880 ~~~lViDEaH 889 (1832)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999766
No 396
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.38 E-value=0.098 Score=70.92 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+++-|.+|+..++.+ +-+++.++.|+|||.+.- +++..+.. .+..+++++||---|..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-----------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-----------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-----------CCCeEEEEeCcHHHHHHH
Confidence 6899999999999875 557899999999997632 23333321 367899999997766554
No 397
>KOG0670|consensus
Probab=95.35 E-value=0.034 Score=68.08 Aligned_cols=10 Identities=30% Similarity=0.182 Sum_probs=6.8
Q ss_pred EEEEecCCCh
Q psy6409 768 IIGVAETGSG 777 (1832)
Q Consensus 768 vIv~apTGSG 777 (1832)
..|+|-||-|
T Consensus 434 Y~V~~~~GkG 443 (752)
T KOG0670|consen 434 YEVQGYTGKG 443 (752)
T ss_pred eEEEeccccc
Confidence 5667777766
No 398
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.29 E-value=0.091 Score=54.95 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLP 1460 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lp 1460 (1832)
++-+++.||+|+|||.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHH
Confidence 456899999999999875443
No 399
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.19 E-value=0.22 Score=68.86 Aligned_cols=72 Identities=19% Similarity=0.046 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
+..+......+ ..+++-|.+|+..+.. ++-++++|+-|+|||.+. -++...+ ...|..++.++||-
T Consensus 369 ~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~-----------e~~G~~V~g~ApTg 435 (1102)
T PRK13826 369 EAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAW-----------EAAGYRVVGGALAG 435 (1102)
T ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHH-----------HHcCCeEEEEcCcH
Confidence 34444433334 4799999999998865 456899999999999853 2333222 12477899999997
Q ss_pred hHHHHH
Q psy6409 816 ELAQQI 821 (1832)
Q Consensus 816 eLa~Qi 821 (1832)
--|..+
T Consensus 436 kAA~~L 441 (1102)
T PRK13826 436 KAAEGL 441 (1102)
T ss_pred HHHHHH
Confidence 776654
No 400
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.04 E-value=0.15 Score=54.38 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=38.6
Q ss_pred EEEcCCCCHHHHHHHHHHhhCCC-CcEEEEcccccccCCCCC--CCEEEEeCCC
Q psy6409 1703 CTLHGGKGQEQRELALNSLKGGS-KDILVATDVAGRGIDIKD--VSMVINYDMA 1753 (1832)
Q Consensus 1703 ~~lHg~ls~~~R~~il~~F~~g~-~~VLVATdvl~~GIDip~--v~~VI~~d~P 1753 (1832)
.++.-+....+...+++.|+... ..||+||.-+++|||+|+ +..||...+|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 34444555556788999998654 379999988999999996 4678887766
No 401
>KOG1015|consensus
Probab=95.03 E-value=0.061 Score=69.56 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc----------------------CCcEEEEcCCCCHHHHHH
Q psy6409 986 DKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL----------------------GYNACTLHGGKGQEQREL 1041 (1832)
Q Consensus 986 ~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~----------------------g~~v~~lhg~~~~~~R~~ 1041 (1832)
.|+..|+++|..+ -+.+.|||..+....+.+-.+|... |....-+.|..+...|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3556677777653 5678999999999999888888542 344567889999999999
Q ss_pred HHHHHhCCC----CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEE
Q psy6409 1042 ALNSLKGGS----KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102 (1832)
Q Consensus 1042 il~~F~~G~----~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~ 1102 (1832)
..+.|.+-. .-.||+|-+.+-|||+-+.+-||.||...++.-=+|-|=|+-|.|+.--|++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyi 1270 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYI 1270 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceee
Confidence 999997642 2379999999999999999999999999999999999999999998754443
No 402
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.02 E-value=0.048 Score=66.33 Aligned_cols=123 Identities=20% Similarity=0.116 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcC
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~ 1505 (1832)
+|+-|.+++.. ...+++|.|+.|||||.+.+--++..+.... .....+|+|++|+..|.++...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999887 6789999999999999987766665554321 2345699999999999999888887532
Q ss_pred CCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccC--CceeEEEccch
Q psy6409 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 1564 (1832)
Q Consensus 1506 ~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~--~v~llViDEaH 1564 (1832)
..... ......-.........+.|+|-..+...+-+...... .-.+-++|+..
T Consensus 71 ~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 21100 0000001111222456889998877654433222221 23566777776
No 403
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=95.01 E-value=0.015 Score=75.02 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.1
Q ss_pred EEEEccchhHHHH
Q psy6409 808 AIIMAPTRELAQQ 820 (1832)
Q Consensus 808 ~LilaPtreLa~Q 820 (1832)
+.|...+.+-|..
T Consensus 231 afV~f~~~e~A~~ 243 (457)
T TIGR01622 231 GFIQFHDAEEAKE 243 (457)
T ss_pred EEEEECCHHHHHH
Confidence 3333444443333
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.51 Score=57.99 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=48.5
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEE-EEc-cchhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI-IMA-PTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~L-ila-PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
+.+.++||||+|||.....-+.... ..+.++. |-+ |-|.-+.++ ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~------------~~GkkVglI~aDt~RiaAvEQ---Lk~yae~lgipv------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH------------GKKKTVGFITTDHSRIGTVQQ---LQDYVKTIGFEV------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH------------HcCCcEEEEecCCcchHHHHH---HHHHhhhcCCcE-------
Confidence 5689999999999987555443221 1244444 444 344333332 223322233322
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+++.+|..+.+.+..-. ...++++|+||-+=+..
T Consensus 300 --------------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 300 --------------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNY 333 (436)
T ss_pred --------------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccC
Confidence 22346766666554311 12258999999987654
No 405
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.83 E-value=0.29 Score=67.84 Aligned_cols=74 Identities=18% Similarity=0.039 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
+++..+......++ .+++-|.+|+..+..+ +=+++.++-|+|||.+. -++...+.. .|..++.++|
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-----------~G~~V~g~Ap 433 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-----------AGYRVVGGAL 433 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-----------cCCeEEEEcC
Confidence 44444444434444 7999999999987653 45888999999999863 333333322 4778999999
Q ss_pred cHHHHHHH
Q psy6409 1489 TRELAQQI 1496 (1832)
Q Consensus 1489 treLa~Qi 1496 (1832)
|---|..+
T Consensus 434 TgkAA~~L 441 (1102)
T PRK13826 434 AGKAAEGL 441 (1102)
T ss_pred cHHHHHHH
Confidence 97766554
No 406
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.78 E-value=0.14 Score=54.73 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCC---cEEEEcCCCCHHHHHHHHHHhhCCCC---cEEEEccc--ccccCCCCC--CCEEEEeCCCC----
Q psy6409 1689 DVLAKGLEKLGY---NACTLHGGKGQEQRELALNSLKGGSK---DILVATDV--AGRGIDIKD--VSMVINYDMAK---- 1754 (1832)
Q Consensus 1689 ~~l~~~L~~~~~---~v~~lHg~ls~~~R~~il~~F~~g~~---~VLVATdv--l~~GIDip~--v~~VI~~d~P~---- 1754 (1832)
+.++..+...+. ...++.-+....+...+++.|++..- .||+|+.- +++|||+|+ +..||...+|-
T Consensus 5 ~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~ 84 (142)
T smart00491 5 EQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPD 84 (142)
T ss_pred HHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCC
Confidence 344444544332 22233333333345778888886543 59998877 999999997 56888877763
Q ss_pred C---------------------------HHHHHHHhcccccCCCccEEEEEee
Q psy6409 1755 S---------------------------IEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1755 s---------------------------~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+ +....|-+||+=|..+.--++++++
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 85 SPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1234688899999654433444443
No 407
>PRK08181 transposase; Validated
Probab=94.68 E-value=0.4 Score=56.85 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=17.0
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.+++++++||+|+|||..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCceEEEEecCCCcHHHHHH
Confidence 57899999999999997543
No 408
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.62 E-value=0.046 Score=68.03 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHH------hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIG------LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~i------l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.+++-|..++..+ .++.++++.+|-|+|||..+- .+..++. ..+..++++|||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~-----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR-----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc-----------cccceEEEecchHHHHHhc
Confidence 3678899998888 577899999999999998642 2222221 2467899999996655443
No 409
>PRK14974 cell division protein FtsY; Provisional
Probab=94.60 E-value=0.15 Score=62.16 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=68.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc--chhHH-HHHHHHHHHhcCCCCCeEEEEEcC
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP--TRELA-QQIEEETNKFGTPLGIRTVLVVGG 842 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP--treLa-~Qi~~~~~~~~~~~~i~v~~~~Gg 842 (1832)
.-++++|++|+|||.+..-.+. ++. ..+.+++++.. .|.-| .|+...... +|+.+.....|
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~-----------~~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLK-----------KNGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHH-----------HcCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCC
Confidence 3488999999999986444332 221 12445555542 23433 444333433 45544322222
Q ss_pred CchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh-cCCChHHHHHHHHhCCCCCCCCCCchhHH
Q psy6409 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI-DMGFEPDVQKILEYMPVTNLKPDTEDAED 921 (1832)
Q Consensus 843 ~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~-d~gf~~~i~~Il~~l~~~~~~~~~~~~~~ 921 (1832)
...... +.+.+... ....+++|+||.|.++. +..+-..+..+...+.
T Consensus 205 ~dp~~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------- 252 (336)
T PRK14974 205 ADPAAV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------- 252 (336)
T ss_pred CCHHHH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC-------------
Confidence 211110 11222211 22457899999999875 2233444444433221
Q ss_pred HHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 922 ~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
+...++.++||........+..|.
T Consensus 253 ------------pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 253 ------------PDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred ------------CceEEEeeccccchhHHHHHHHHH
Confidence 234578889988776666666664
No 410
>KOG0147|consensus
Probab=94.43 E-value=0.084 Score=65.24 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=9.0
Q ss_pred EEEEEcccchHHHHHHHHH
Q psy6409 1003 VIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 1003 vIVFv~s~~~~~~l~~~L~ 1021 (1832)
|-|=|.+...|......|.
T Consensus 493 VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 493 VYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred EEEecCcHHHHHHHHHHHh
Confidence 3333445555555555443
No 411
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.41 E-value=0.24 Score=59.03 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=82.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
-+|+..-+-.|.-|+..++... =|.+.++-|||||+.++-+.+...... ....++||.=|+..+.+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~---------~~y~KiiVtRp~vpvG~d-- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER---------KRYRKIIVTRPTVPVGED-- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH---------hhhceEEEecCCcCcccc--
Confidence 3578778889999999998753 377889999999999888887665442 235568888887665432
Q ss_pred HHHHHhcCCCCCeEEEEECCcchH---------HHHHHhhcCCcEEEeCHHHHHHHHHccccccCCc----------eeE
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSRE---------EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC----------TYI 1558 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~---------~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v----------~ll 1558 (1832)
+..+-|..... +....+.... =++-+.+..++....+.+..+ .+|
T Consensus 292 -------------IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~Fi 355 (436)
T COG1875 292 -------------IGFLPGTEEEKMGPWMQAIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFI 355 (436)
T ss_pred -------------cCcCCCchhhhccchHHHHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceE
Confidence 22233321111 0001111110 123455556655554433222 689
Q ss_pred EEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
|||||..|- ..++..|+++..
T Consensus 356 IIDEaQNLT----pheikTiltR~G 376 (436)
T COG1875 356 IIDEAQNLT----PHELKTILTRAG 376 (436)
T ss_pred EEehhhccC----HHHHHHHHHhcc
Confidence 999999874 667888888775
No 412
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.33 E-value=0.072 Score=55.65 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=16.5
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
+..++++||+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45799999999999986544
No 413
>KOG4368|consensus
Probab=94.31 E-value=0.027 Score=68.95 Aligned_cols=8 Identities=0% Similarity=-0.471 Sum_probs=3.8
Q ss_pred cceEEEEe
Q psy6409 195 RQTVMFTA 202 (1832)
Q Consensus 195 ~~~~~~~~ 202 (1832)
++++.|+.
T Consensus 338 ~P~~p~~~ 345 (757)
T KOG4368|consen 338 PPHCPPWN 345 (757)
T ss_pred CCCCCCCC
Confidence 34454444
No 414
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.26 E-value=1.4 Score=65.77 Aligned_cols=238 Identities=14% Similarity=0.095 Sum_probs=121.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
.+++-|.+|+..++.+ +-.++.|+-|+|||.+ +-.++..+ ...|..+++++||-.-|....+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~-----------~~~G~~V~~lAPTgrAA~~L~e~~g~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLA-----------SEQGYEIQIITAGSLSAQELRQKIPR 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHH-----------HhcCCeEEEEeCCHHHHHHHHHHhcc
Confidence 6899999999999986 4589999999999985 22333222 12477899999998877665543321
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
.+ .. .......+. ...-..|...++ .....+...++||||||-++. ...+..|+...
T Consensus 497 ~A-------~T------i~~~l~~l~--~~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a 553 (1960)
T TIGR02760 497 LA-------ST------FITWVKNLF--NDDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKA 553 (1960)
T ss_pred hh-------hh------HHHHHHhhc--ccccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHH
Confidence 10 00 000000000 011122333332 223345678999999999553 23344444433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec--CCh----HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT--MPP----AVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 981 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT--l~~----~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~ 981 (1832)
.. ...++|++-=+ +|. .+..++... .-|... ..........+ .+..
T Consensus 554 ~~------------------------~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~-l~~i~rq~~~v--~i~~ 605 (1960)
T TIGR02760 554 EQ------------------------HNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYA-WVDTKQQKASV--EISE 605 (1960)
T ss_pred hh------------------------cCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEE-eecccccCcce--eeec
Confidence 21 12445544322 221 233333322 112221 11111111111 1111
Q ss_pred cchhhHHHHHHHHHHc-C-CCCCEEEEEcccchHHHHHHHHHH----cC------CcEEEEc-CCCCHHHHHHHHHHHhC
Q psy6409 982 LSEQDKRKKLMEVLNR-G-VKKPVIIFVNQKKGADVLAKGLEK----LG------YNACTLH-GGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 982 ~~~~~k~~~L~~~l~~-~-~~~~vIVFv~s~~~~~~l~~~L~~----~g------~~v~~lh-g~~~~~~R~~il~~F~~ 1048 (1832)
.....+...+.+.... . ....++||+.+..+...|....+. .| +.+..+. ..|+..++... ..|+.
T Consensus 606 ~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~ 684 (1960)
T TIGR02760 606 AVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQ 684 (1960)
T ss_pred cCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCC
Confidence 2223333344433322 2 233589999998888888777643 22 2233333 36777777744 77877
Q ss_pred CCC
Q psy6409 1049 GSK 1051 (1832)
Q Consensus 1049 G~~ 1051 (1832)
|..
T Consensus 685 Gdv 687 (1960)
T TIGR02760 685 GMV 687 (1960)
T ss_pred CCE
Confidence 753
No 415
>KOG0151|consensus
Probab=94.23 E-value=0.025 Score=70.94 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=8.2
Q ss_pred ChHHHHHHHhhCCcCC
Q psy6409 155 FEPDVQKILEYMPVTN 170 (1832)
Q Consensus 155 f~~~~~~i~~~~~~~~ 170 (1832)
||+++-.||..|...+
T Consensus 513 FEa~L~~Ifd~l~~~y 528 (877)
T KOG0151|consen 513 FEATLEDIFDDLNDLY 528 (877)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
No 416
>KOG0835|consensus
Probab=94.20 E-value=0.096 Score=60.78 Aligned_cols=55 Identities=27% Similarity=0.250 Sum_probs=26.3
Q ss_pred EcccCCcchhhHHHHhhhhchhHH----HHHHHHHhhcccCcEEEEEecccchhHHHhHHH
Q psy6409 271 IGSVGKPTERIEQIVYILSEQDKR----KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327 (1832)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1832)
++..++ ..|+-+-+++-+-=+| ..+++.|=....-.++..-.+++.+.+-+.+|.
T Consensus 210 ~Fd~~k--~eid~ic~~l~~lY~~~~p~~~li~~~vd~~k~~~~da~~k~~~~~ds~~~l~ 268 (367)
T KOG0835|consen 210 AFDTTK--REIDEICYRLIPLYKRAKPDETLIEAFVDRLKRKFSDASGKAKGANDSASLLG 268 (367)
T ss_pred HcCCcH--HHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhHHHHhccCCccchhhHHHhhc
Confidence 444433 4555555555553343 334444433333334445556666666444433
No 417
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.19 E-value=0.26 Score=52.59 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=38.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCC-CcEEEecccccccCCCcCc--CEEEEcCCC
Q psy6409 1028 CTLHGGKGQEQRELALNSLKGGS-KDILVATDVAGRGIDIKDV--SMVINYDMA 1078 (1832)
Q Consensus 1028 ~~lhg~~~~~~R~~il~~F~~G~-~~VLVaTdv~~rGlDip~v--~~VI~~d~p 1078 (1832)
.++.-+....+...+++.|+... ..||+||.-+++|||+|+- ..||..++|
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 33444455556788888898654 3799999889999999984 578877766
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.17 E-value=0.25 Score=52.07 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997433
No 419
>PRK04296 thymidine kinase; Provisional
Probab=94.10 E-value=0.065 Score=60.34 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=24.4
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
-.++.||.|+|||..++--+.... ..+.+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~------------~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYE------------ERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH------------HcCCeEEEEec
Confidence 368899999999987655444322 23667888866
No 420
>PRK06526 transposase; Provisional
Probab=94.06 E-value=0.1 Score=61.46 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHH
Q psy6409 1436 IGLQNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1436 ~il~g~dvii~ApTGSGKTla~~l 1459 (1832)
.+-.+.++++++|+|+|||..+.-
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHH
Confidence 344678999999999999986544
No 421
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.04 E-value=0.32 Score=59.39 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCcEEEEecCCChHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ 782 (1832)
+.++++.||||+|||..+
T Consensus 183 ~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS 200 (329)
T ss_pred CCcEEEECCCCCcHHHHH
Confidence 578999999999999853
No 422
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.95 E-value=0.3 Score=58.26 Aligned_cols=133 Identities=19% Similarity=0.159 Sum_probs=81.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
-.|+..-+..|.-|+..++.-. =|.+.|+-|||||+.++-+.+..... .....+++|.=|+..+...
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e---------~~~y~KiiVtRp~vpvG~d-- 291 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE---------RKRYRKIIVTRPTVPVGED-- 291 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH---------HhhhceEEEecCCcCcccc--
Confidence 3699889999999999999753 37888999999999998888876543 2235568887787655322
Q ss_pred HHHHHhcCCCCCeEEEEEcCCc---------hHHHHHHHhcCCceeecCHHHHHHHHHccccccCC----------ceeE
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLS---------REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQ----------CTYI 883 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~---------~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~----------~~~l 883 (1832)
++++-|... ..+....+.. .-=++.+.+...+.++.+.+.. =.||
T Consensus 292 -------------IGfLPG~eEeKm~PWmq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~Fi 355 (436)
T COG1875 292 -------------IGFLPGTEEEKMGPWMQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFI 355 (436)
T ss_pred -------------cCcCCCchhhhccchHHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceE
Confidence 122222111 0001111111 1112345555555555442221 1589
Q ss_pred EEecchhhhcCCChHHHHHHHHhCC
Q psy6409 884 VLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 884 ViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
|||||..|- ..++..|+.+..
T Consensus 356 IIDEaQNLT----pheikTiltR~G 376 (436)
T COG1875 356 IIDEAQNLT----PHELKTILTRAG 376 (436)
T ss_pred EEehhhccC----HHHHHHHHHhcc
Confidence 999999664 457777877764
No 423
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.89 E-value=0.16 Score=59.18 Aligned_cols=143 Identities=18% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~ 1475 (1832)
.+|..+.+|+++++|+.+.+.+.. .+. ++|.+|||||||.. +-+|+.++.+.....-
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HI-- 157 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHI-- 157 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhccCCcce--
Confidence 578899999999999888774431 122 78889999999976 5567777755221000
Q ss_pred ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeC----HHHHHHHHHccccc
Q psy6409 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT----PGRLIDVLENRYLV 1551 (1832)
Q Consensus 1476 ~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaT----P~rl~~~l~~~~~~ 1551 (1832)
-.-..|.=.+-.+-+.|+.|- +++.. +. .-...-...++..+|||+.- .+.+.-.+ .
T Consensus 158 lTIEDPIE~vh~skkslI~QR-----EvG~d----T~-----sF~~aLraALReDPDVIlvGEmRD~ETi~~AL-----t 218 (353)
T COG2805 158 LTIEDPIEYVHESKKSLINQR-----EVGRD----TL-----SFANALRAALREDPDVILVGEMRDLETIRLAL-----T 218 (353)
T ss_pred EEecCchHhhhcchHhhhhHH-----Hhccc----HH-----HHHHHHHHHhhcCCCEEEEeccccHHHHHHHH-----H
Confidence 001122222233345555551 11110 00 00112234566677776531 22222222 1
Q ss_pred cCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1552 l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
....+.+||==.|.. +--..+.+|++.+|
T Consensus 219 AAETGHLV~~TLHT~---sA~~ti~RiidvFp 247 (353)
T COG2805 219 AAETGHLVFGTLHTN---SAAKTIDRIIDVFP 247 (353)
T ss_pred HHhcCCEEEEecccc---cHHHHHHHHHHhCC
Confidence 233456666666643 33556777777776
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.87 E-value=0.28 Score=51.61 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+..+++.+|+|+|||..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999754
No 425
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.73 E-value=0.18 Score=62.87 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHH------HcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 750 EPTPIQRQAIPIG------LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 750 ~pt~iQ~~ai~~i------l~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
++++-|+.++..+ ..+.++++.|+-|+|||..+- .+..++ ...+..++++|||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~-----------~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYL-----------RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHh-----------ccccceEEEecchHHHHHhc
Confidence 3678899998888 567889999999999998422 122222 12467899999998777665
No 426
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.63 E-value=0.53 Score=55.00 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.1
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..+++.|++|+|||..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997544
No 427
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.63 E-value=0.27 Score=52.47 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCC---cEEEeccc--ccccCCCcC--cCEEEEcCCCC----C--------------------------
Q psy6409 1038 QRELALNSLKGGSK---DILVATDV--AGRGIDIKD--VSMVINYDMAK----S-------------------------- 1080 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~---~VLVaTdv--~~rGlDip~--v~~VI~~d~p~----s-------------------------- 1080 (1832)
+...+++.|++..- .||+|+.- +++|||+|+ +..||..++|- +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677888876543 69998877 999999998 46888777763 1
Q ss_pred -HhHHHHHhcccccCCCCcEEEEEe
Q psy6409 1081 -IEDYTHRIGRTGRAGKEGLAVSFC 1104 (1832)
Q Consensus 1081 -~~~yvQr~GRaGR~g~~G~ai~~~ 1104 (1832)
+....|-+||+=|...+--++.|+
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~ 136 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLL 136 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEE
Confidence 123468889998876553334443
No 428
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.61 E-value=0.14 Score=56.89 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 731 ~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
...+|| ....+..+.|.....++...+..+. .++++++.||+|+|||..+..-+-..+..
T Consensus 9 ~~a~lp--~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~------------ 74 (178)
T PF01695_consen 9 KQAGLP--PDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRK------------ 74 (178)
T ss_dssp ---------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHT------------
T ss_pred cccccc--cccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccC------------
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---------
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--------- 875 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--------- 875 (1832)
+..+++.+...|++.+.....
T Consensus 75 --------------------------------------------------g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~ 104 (178)
T PF01695_consen 75 --------------------------------------------------GYSVLFITASDLLDELKQSRSDGSYEELLK 104 (178)
T ss_dssp --------------------------------------------------T--EEEEEHHHHHHHHHCCHCCTTHCHHHH
T ss_pred --------------------------------------------------CcceeEeecCceeccccccccccchhhhcC
Q ss_pred ccCCceeEEEecc
Q psy6409 876 VLNQCTYIVLDEA 888 (1832)
Q Consensus 876 ~l~~~~~lViDEa 888 (1832)
.+..+++|||||.
T Consensus 105 ~l~~~dlLilDDl 117 (178)
T PF01695_consen 105 RLKRVDLLILDDL 117 (178)
T ss_dssp HHHTSSCEEEETC
T ss_pred ccccccEeccccc
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.50 E-value=1.4 Score=54.84 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEE-EEEcC-cHHHHHHHHHHHHHhcCCCCCeEEEEECC
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA-IIMAP-TRELAQQIEEETNKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~v-LiLaP-treLa~Qi~~~~~~~~~~~g~~v~~l~gg 1517 (1832)
+..+++++|||+|||.+..--+..+... ....+..| |+-+- .|.-+..+ ++.++..+|+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~--------~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~----- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGIN--------SDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVK----- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh--------hccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceE-----
Confidence 3578999999999998764433322111 00123333 33333 34444433 3444433444321
Q ss_pred cchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1518 ~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
++.++..+...+.. +.++++||||++.++.
T Consensus 238 ----------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 238 ----------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSP 267 (388)
T ss_pred ----------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCc
Confidence 12234444444432 4678999999999764
No 430
>PRK06893 DNA replication initiation factor; Validated
Probab=93.46 E-value=0.2 Score=58.28 Aligned_cols=15 Identities=20% Similarity=-0.013 Sum_probs=13.2
Q ss_pred cEEEEecCCChHHHH
Q psy6409 767 DIIGVAETGSGKTLA 781 (1832)
Q Consensus 767 dvIv~apTGSGKTla 781 (1832)
.++++||+|+|||..
T Consensus 41 ~l~l~G~~G~GKThL 55 (229)
T PRK06893 41 FFYIWGGKSSGKSHL 55 (229)
T ss_pred eEEEECCCCCCHHHH
Confidence 479999999999974
No 431
>PRK04296 thymidine kinase; Provisional
Probab=93.31 E-value=0.13 Score=57.87 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=23.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.++.+|+|+|||..++--+.... ..+.+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~------------~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYE------------ERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH------------HcCCeEEEEec
Confidence 57889999999987654444332 13667888866
No 432
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.22 E-value=0.17 Score=55.69 Aligned_cols=103 Identities=21% Similarity=0.125 Sum_probs=41.8
Q ss_pred EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHH
Q psy6409 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848 (1832)
Q Consensus 769 Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~ 848 (1832)
|+.|+-|-|||.+..+.+-..+ ......++|.+|+.+-++.+.+.+..-+..++.+......+.. .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~-----------~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~---~ 66 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALI-----------QKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQ---I 66 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSS-----------S-----EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHH-----------HhcCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccc---c
Confidence 5789999999997666442111 1223579999999998888777666555544443300000000 0
Q ss_pred HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 849 ~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
......+..|-+..|..+.. .....++||||||=.+.
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~-------~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLA-------EKPQADLLIVDEAAAIP 103 (177)
T ss_dssp ------CCC--B--HHHHCC-------T----SCEEECTGGGS-
T ss_pred cccccccceEEEECCHHHHh-------CcCCCCEEEEechhcCC
Confidence 00011246677888876621 22346899999998543
No 433
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.12 E-value=1.3 Score=50.03 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=15.8
Q ss_pred EEEEecCCChHHHHHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil 787 (1832)
++++||||+|||.+..--+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHH
Confidence 78999999999987554443
No 434
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.08 E-value=0.11 Score=58.97 Aligned_cols=40 Identities=30% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCCcccCcccCCCCHHHHH-HHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHH
Q psy6409 723 VPDPVRNWKEASLPTEILE-IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~-~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla 781 (1832)
+...|..|++++||+.+.+ ++.+.|. +|++|+|||||+..
T Consensus 103 I~~~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTt 143 (375)
T COG5008 103 IETKIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTT 143 (375)
T ss_pred hhccCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhh
Confidence 3345668999999988776 5567777 99999999999976
No 435
>PRK08181 transposase; Validated
Probab=93.00 E-value=0.45 Score=56.42 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHH
Q psy6409 1437 GLQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1437 il~g~dvii~ApTGSGKTla~~ 1458 (1832)
+-.+.++++++|+|+|||..+.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH
Confidence 4467899999999999997543
No 436
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.88 E-value=0.28 Score=66.81 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..-=+...|.. .......+|+|+.|+..|.++.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~--------~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSV--------ENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999854 34679999999999999854444333311 1123457999999999999999999887
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDEaH~ 890 (1832)
.... ...+.|+|-..+...+.+... .+. -.+-|+|+.+.
T Consensus 73 ~~~~----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 73 LGTS----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred hccc----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 4210 124568898877654443321 111 13567888774
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.88 E-value=0.096 Score=54.67 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~l 1459 (1832)
+..+++.+|+|+|||.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46789999999999987543
No 438
>KOG0701|consensus
Probab=92.84 E-value=0.079 Score=74.42 Aligned_cols=95 Identities=25% Similarity=0.379 Sum_probs=79.3
Q ss_pred CcEEEEECchhHHHHHHHHHHHcC-CcEEEEcCCCC-----------HHHHHHHHHHhhCCCCcEEEEcccccccCCCCC
Q psy6409 1676 KPVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKG-----------QEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1743 (1832)
Q Consensus 1676 ~~vIVFv~s~~~a~~l~~~L~~~~-~~v~~lHg~ls-----------~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~ 1743 (1832)
-..|+||+.+..+..+++.+.... +.+..+.|.+. +..+..++..|....+++|++|.++.+|+|+|.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 356999999999999988887652 33444555443 224678999999999999999999999999999
Q ss_pred CCEEEEeCCCCCHHHHHHHhcccccCC
Q psy6409 1744 VSMVINYDMAKSIEDYTHRIGRTGRAG 1770 (1832)
Q Consensus 1744 v~~VI~~d~P~s~~~yiQRiGRaGR~g 1770 (1832)
++.|+.++.|.....|+|..||+-+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997653
No 439
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.79 E-value=0.35 Score=64.80 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=53.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..-..+++-|.+|+-. ...+++|.|..|||||.+.+--+...|.. ....+..+|+|+.|+..|..+.+++
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~--------~~~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLAR--------GQAQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHh--------CCCCHHHeEEEeccHHHHHHHHHHH
Confidence 3345799999999853 33568999999999999855444332211 1123558999999999999999888
Q ss_pred HHh
Q psy6409 826 NKF 828 (1832)
Q Consensus 826 ~~~ 828 (1832)
...
T Consensus 262 ~~~ 264 (684)
T PRK11054 262 RER 264 (684)
T ss_pred HHh
Confidence 775
No 440
>PRK14974 cell division protein FtsY; Provisional
Probab=92.75 E-value=0.85 Score=55.75 Aligned_cols=131 Identities=20% Similarity=0.244 Sum_probs=66.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC--c-HHHHHHHHHHHHHhcCCCCCeEEEEECC
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP--T-RELAQQIEEETNKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP--t-reLa~Qi~~~~~~~~~~~g~~v~~l~gg 1517 (1832)
.=+++++|+|+|||.+....+. ++.. .+..++++.. . ..-..|+......+ |+.+.....+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~-----------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g 204 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK-----------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYG 204 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH-----------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCC
Confidence 3478899999999986443332 2222 2445655543 2 33445554444443 4433221111
Q ss_pred cchHHHHHHhhcCCcEEEeCHHH-HHHHHHccccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhh
Q psy6409 1518 LSREEQGFRLRLGCEIVIATPGR-LIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAE 1595 (1832)
Q Consensus 1518 ~~~~~~~~~l~~~~~IiVaTP~r-l~~~l~~~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~ 1595 (1832)
.. |.. +.+.+.. .....+++|+||.+.++.. ..+-..+..+...+.
T Consensus 205 ~d------------------p~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------ 252 (336)
T PRK14974 205 AD------------------PAAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------ 252 (336)
T ss_pred CC------------------HHHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------
Confidence 11 111 1122221 1124568999999997742 223344444443332
Q ss_pred hHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc
Q psy6409 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 1632 (1832)
Q Consensus 1596 ~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l 1632 (1832)
+...++.++||........+..|.
T Consensus 253 -------------pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 253 -------------PDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -------------CceEEEeeccccchhHHHHHHHHH
Confidence 223567788888766555555554
No 441
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.73 E-value=0.33 Score=66.12 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..++|-|.+|+... ...++|.|..|||||.+..-=+...+.. .......+|+|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQV--------ENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998643 4579999999999999754444333211 1123457999999999999999999886
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cC-CceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LN-QCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~-~~~~lViDEaH~ 890 (1832)
.... ...+.|+|--.+..-+.+.... +. .-.+-|+|+.+.
T Consensus 78 ~~~~----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 78 LGTS----------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred hccC----------------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 4210 1235688988776554443211 11 123568888774
No 442
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.73 E-value=0.32 Score=60.83 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~l 783 (1832)
-|-......+..+..++++|++||+|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3455566667777789999999999999998764
No 443
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.71 E-value=0.18 Score=62.10 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.9
Q ss_pred cCCcEEEEecCCChHHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil 787 (1832)
.|..++++||||+|||.....-+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466799999999999997655443
No 444
>KOG0796|consensus
Probab=92.69 E-value=0.06 Score=62.80 Aligned_cols=39 Identities=38% Similarity=0.534 Sum_probs=25.4
Q ss_pred HHhhhccccCCcceEEEEcccc--------hhhcCCChHHHHHHHhhC
Q psy6409 127 DVLENRYLVLNQCTYIVLDEAD--------RMIDMGFEPDVQKILEYM 166 (1832)
Q Consensus 127 ~~~~~~~~~l~~~~~~vlDEad--------~~l~~gf~~~~~~i~~~~ 166 (1832)
|++.+-...|-.|. -|-|+++ +=.++||+-+...+++.+
T Consensus 45 DlF~nTk~dlg~C~-kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~~~ 91 (319)
T KOG0796|consen 45 DLFQNTKMDLGPCP-KVHDEALKADYERASKERDYGYEWDALEILERF 91 (319)
T ss_pred HHhhhhhcccCccc-chhhHHHHHHHhhchHhhhhhhhHHHHHHHHHH
Confidence 34444444555443 6667664 456899999988888876
No 445
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.62 E-value=0.35 Score=56.96 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
++.++++.+|+|+|||..+.......+ . ...-++++++-+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~------------~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K------------AGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H------------cCCeEEEEEHHHHHHHHHHHHhc
Confidence 678999999999999987543333222 2 23355566777888776555443
No 446
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.50 E-value=2.6 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=17.4
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
++.++++||||+|||.+...-+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999998655433
No 447
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.46 E-value=0.44 Score=56.55 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.6
Q ss_pred CcEEEEecCCChHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLP 785 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llp 785 (1832)
.++++.||+|+|||.++-+-
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 46999999999999876543
No 448
>KOG0670|consensus
Probab=92.45 E-value=0.1 Score=64.09 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhcCCCC
Q psy6409 817 LAQQIEEETNKFGTPLG 833 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~ 833 (1832)
|.+...+++++++...|
T Consensus 516 LslNLRevLKKyG~nvG 532 (752)
T KOG0670|consen 516 LSLNLREVLKKYGRNVG 532 (752)
T ss_pred hhchHHHHHHHhCcccc
Confidence 34444444455444433
No 449
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.32 E-value=0.23 Score=58.42 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=33.4
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
++.++++.||+|+|||..+.--. ..+. ....-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~-~~l~------------~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIG-NELL------------KAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHH-HHHH------------HcCCeEEEEEHHHHHHHHHHHHhc
Confidence 56799999999999998644322 2221 123445567788888876655543
No 450
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.29 E-value=0.2 Score=59.76 Aligned_cols=62 Identities=27% Similarity=0.277 Sum_probs=46.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~gr-dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
..|...++-|...+..+..++ |++++|.||||||+ +|-++. .. ....-+++++--|-||-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~---~~--------i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALS---GF--------IDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHH---hc--------CCCcccEEEEeehhhhccC
Confidence 357889999999999999876 99999999999998 232221 10 1123389999999888544
No 451
>PRK05642 DNA replication initiation factor; Validated
Probab=92.26 E-value=0.35 Score=56.33 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=13.9
Q ss_pred CcEEEEecCCChHHHH
Q psy6409 766 RDIIGVAETGSGKTLA 781 (1832)
Q Consensus 766 rdvIv~apTGSGKTla 781 (1832)
..++++||+|+|||-.
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999974
No 452
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.25 E-value=1.1 Score=52.31 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
..+++.+++|+|||..+.
T Consensus 100 ~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997643
No 453
>PHA02533 17 large terminase protein; Provisional
Probab=92.21 E-value=0.52 Score=61.25 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|.|+|...+..+..++-.++..+=..|||.+....++..... ..+..+++++|+..-|..+.+.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 4778898888877666667788888999999877655543321 235689999999999999888887654
Q ss_pred CCCCC--eEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLGI--RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~i--~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++. ... +... ......+.+|..|.+.|-+. +...-.+..++|+||+|.+.
T Consensus 129 e~~P~l~~~~-i~~~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 129 ELLPDFLQPG-IVEW---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred HhCHHHhhcc-eeec---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC
Confidence 43221 111 0100 01112234456665544210 11122356789999999654
No 454
>KOG0733|consensus
Probab=92.20 E-value=1.5 Score=55.68 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.0
Q ss_pred cEEEEecCCChHHHHH
Q psy6409 767 DIIGVAETGSGKTLAF 782 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ 782 (1832)
-+++|||.|+|||+.+
T Consensus 547 GvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLA 562 (802)
T ss_pred ceEEeCCCCccHHHHH
Confidence 3999999999999853
No 455
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.19 E-value=0.5 Score=64.05 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
++|-|.+++.. ...+++|.|..|||||.+.+--+...+.. .......+|+|+.|+..|.++...+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--------~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--------CGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 78899998754 35689999999999999755555443321 012345799999999999999999887642
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccc-cC-CceeEEEecchh
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LN-QCTYIVLDEADR 890 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~-l~-~~~~lViDEaH~ 890 (1832)
.. ....|.|+|-.+|...+.+.... +. .-.+-|+|+.+.
T Consensus 72 ~~---------------------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 72 KG---------------------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred cc---------------------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 10 02356788988887555443211 11 123567888774
No 456
>PRK06921 hypothetical protein; Provisional
Probab=92.19 E-value=0.99 Score=53.64 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCcEEEEecCCChHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ 782 (1832)
+.++++.|+||+|||..+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 567999999999999753
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.15 E-value=1.2 Score=47.90 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=23.9
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
++++||+|+|||......+.... ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~------------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA------------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH------------hcCCEEEEEECCcch
Confidence 68999999999986544332211 135567777655443
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.12 E-value=0.47 Score=56.25 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=53.8
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH-HHhcCCCCCeEEEEEcCCc
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET-NKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~-~~~~~~~~i~v~~~~Gg~~ 844 (1832)
.+++++|+||.|||.+. -.+...+|.... .....-|.+++-+|...=..-.+..+ ..++.+..- .
T Consensus 62 p~lLivG~snnGKT~Ii----~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII----ERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------R- 127 (302)
T ss_pred CceEEecCCCCcHHHHH----HHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------C-
Confidence 47999999999999842 122223333221 11223467777778766554444443 333333211 0
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+...+...+. ..+.--.+++|||||.|.++.....
T Consensus 128 ----------------~~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~ 163 (302)
T PF05621_consen 128 ----------------DRVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYR 163 (302)
T ss_pred ----------------CCHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHH
Confidence 01111111111 1223456799999999999875533
No 459
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.09 E-value=0.38 Score=58.50 Aligned_cols=67 Identities=28% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHH-cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il-~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
+..+.+.|+ +++.|.+.+..+. .+++++++|+||||||. ++-.++..+.. .....+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~---------~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVI---------QDPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhh---------cCCCceEEEEcCCCccc
Confidence 445555666 5677888887655 46899999999999995 34445443311 12345788888888873
No 460
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.09 E-value=0.37 Score=56.73 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=63.4
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCc--------CEEEEcCCCCCHhHHHHHhcccccCCCC-cEEEEEecCC---C
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDV--------SMVINYDMAKSIEDYTHRIGRTGRAGKE-GLAVSFCTKD---D 1108 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v--------~~VI~~d~p~s~~~yvQr~GRaGR~g~~-G~ai~~~~~~---d 1108 (1832)
...+.|.+|+..|+|.|+.++.||.+.+- .+-|...+|.|....+|.+||+-|.|+. .-.+.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 45678999999999999999999988642 3556788999999999999999999874 5556666555 5
Q ss_pred chHHHHHHHHHhc
Q psy6409 1109 SHLFYDLKQMMIS 1121 (1832)
Q Consensus 1109 ~~~~~~l~~~l~~ 1121 (1832)
..+...+.+-|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 5666666665543
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.97 E-value=1.2 Score=48.15 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
+++.+|+|+|||......+.... ..+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~------------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA------------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH------------hcCCEEEEEECCcch
Confidence 68899999999986544333221 135567777664443
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.92 E-value=0.41 Score=49.83 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=13.5
Q ss_pred EEEEecCCChHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFL 783 (1832)
Q Consensus 768 vIv~apTGSGKTla~l 783 (1832)
+++.||.|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999998543
No 463
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.88 E-value=0.45 Score=55.55 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.1
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999997533
No 464
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.86 E-value=0.57 Score=57.19 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
.+.++++.+|||+|||..+. +|...+.. .+..|+|+ +..+|+.++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~-----------~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD-----------RGKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCeEEEE-EHHHHHHHHH
Confidence 35789999999999998543 33333321 24455554 4456655543
No 465
>PRK06893 DNA replication initiation factor; Validated
Probab=91.85 E-value=0.44 Score=55.36 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~ 1457 (1832)
.+++++|+|+|||...
T Consensus 41 ~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 41 FFYIWGGKSSGKSHLL 56 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4799999999999754
No 466
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.76 E-value=5.8 Score=59.57 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
.+++-|.+|+..++... =.++.++.|+|||.+. -.++..+. ..|..+++++||-.-+..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~-----------~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLAS-----------EQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHH-----------hcCCeEEEEeCCHHHHHHHHH
Confidence 68999999999998764 4788899999999753 33333332 247789999999876665544
No 467
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.64 E-value=3.8 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=18.2
Q ss_pred cCCcEEEEecCCChHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpi 786 (1832)
.+..+.+++++|+|||..+.+-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999766544
No 468
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=91.61 E-value=0.32 Score=65.56 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+++-|.+|+.. ....++|+|+.|||||.+.+--+...|.. ......++|+|+.|+..|.++..++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG--------CGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999864 34678999999999999855555443321 01234579999999999999999988763
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccC-CceeEEEecchh
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLN-QCTYIVLDEADR 890 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~-~~~~lViDEaH~ 890 (1832)
... ....+.|+|.-.|...+.+... .+. .-.+-|+|+.+.
T Consensus 72 ~~~---------------------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 72 GRK---------------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred Ccc---------------------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 210 0124668888877644433221 111 124567787763
No 469
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.56 E-value=0.51 Score=57.28 Aligned_cols=65 Identities=22% Similarity=0.171 Sum_probs=43.6
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa 818 (1832)
.+.+.|+ .++.|...|..+.. +.++|++|+||||||.. +-.++..+.. ...+-+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~---------~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVA---------SAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhc---------CCCCceEEEecCCcccc
Confidence 3445555 56788888777665 67999999999999974 3334443321 11245788888888874
No 470
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.54 E-value=2.7 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCChHHHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpi 786 (1832)
.++.++++||||+|||....--+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998655444
No 471
>KOG0701|consensus
Probab=91.44 E-value=0.14 Score=71.98 Aligned_cols=95 Identities=25% Similarity=0.387 Sum_probs=78.7
Q ss_pred CEEEEEcccchHHHHHHHHHHcC-CcEEEEcCCCC-----------HHHHHHHHHHHhCCCCcEEEecccccccCCCcCc
Q psy6409 1002 PVIIFVNQKKGADVLAKGLEKLG-YNACTLHGGKG-----------QEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069 (1832)
Q Consensus 1002 ~vIVFv~s~~~~~~l~~~L~~~g-~~v~~lhg~~~-----------~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v 1069 (1832)
..|+||+.+..+..+++.+.... ..+..+.|.+. ...+..++..|....+++|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 36899999999988888887653 23333444432 2336789999999999999999999999999999
Q ss_pred CEEEEcCCCCCHhHHHHHhcccccCCC
Q psy6409 1070 SMVINYDMAKSIEDYTHRIGRTGRAGK 1096 (1832)
Q Consensus 1070 ~~VI~~d~p~s~~~yvQr~GRaGR~g~ 1096 (1832)
+.|+.++.|.....|+|..||+-+++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchh
Confidence 999999999999999999999977653
No 472
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.36 E-value=0.58 Score=58.67 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~ 1458 (1832)
|-......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777789999999999999998764
No 473
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.27 E-value=4.1 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPL 1461 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpi 1461 (1832)
.+.+++++|||+|||.....-+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3578999999999998754443
No 474
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.21 E-value=2.9 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=17.1
Q ss_pred CcEEEEecCCChHHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil 787 (1832)
.-++++||||+|||....--+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999997665443
No 475
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.20 E-value=0.72 Score=58.82 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
|+-+.++||||+|||++...-.-.+... .+....+|+-+-+ |.-|.++ +..++..+|+.+.......
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---------~G~~kV~LI~~Dt~RigA~EQ---Lr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMR---------HGASKVALLTTDSYRIGGHEQ---LRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHh---------cCCCeEEEEeCCccchhHHHH---HHHHHHHhCCCeeccCCch
Confidence 4558899999999999765544322111 0111233444333 4444443 3333334455554444443
Q ss_pred chHHHHHHHhcCCceeecCHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRL 866 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL 866 (1832)
........+...-.++|-|+|+.
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcC
Confidence 33333444444567889999855
No 476
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=91.16 E-value=0.63 Score=63.50 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..--+...+.. .......+|+|+.|+..|.++...+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~--------~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSV--------ENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999854 34689999999999999865555444422 1123456999999999999999999886
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 73 ~ 73 (715)
T TIGR01075 73 L 73 (715)
T ss_pred h
Confidence 4
No 477
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.15 E-value=0.54 Score=55.77 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=54.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH-HhcCCCCCeEEEEECCcc
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~-~~~~~~g~~v~~l~gg~~ 1519 (1832)
.+++++++||.|||.+.. .+....|.... .....-|.+++-+|...=..-.+..+- .++.+..-+ .
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------~- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------D- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC-------C-
Confidence 589999999999998531 22223333221 122234777888886655544444443 333221110 0
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChH
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+...+..... ..+.--.+.+|||||+|+++......
T Consensus 129 -----------------~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~~ 164 (302)
T PF05621_consen 129 -----------------RVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYRK 164 (302)
T ss_pred -----------------CHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHHH
Confidence 1111111111 12234568999999999998766443
No 478
>PRK08727 hypothetical protein; Validated
Probab=91.05 E-value=0.58 Score=54.53 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=13.4
Q ss_pred cEEEEecCCChHHHH
Q psy6409 767 DIIGVAETGSGKTLA 781 (1832)
Q Consensus 767 dvIv~apTGSGKTla 781 (1832)
-++++||+|+|||-.
T Consensus 43 ~l~l~G~~G~GKThL 57 (233)
T PRK08727 43 WLYLSGPAGTGKTHL 57 (233)
T ss_pred eEEEECCCCCCHHHH
Confidence 499999999999964
No 479
>PRK06921 hypothetical protein; Provisional
Probab=90.92 E-value=1.2 Score=52.94 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+.++++.+++|+|||..+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 578999999999999754
No 480
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.86 E-value=1.4 Score=58.27 Aligned_cols=141 Identities=22% Similarity=0.213 Sum_probs=84.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
-..+.....+.+..-|.+.+..++..+ -+++.|.-|=|||.+.-|.+...... .....++|.+|+.+=
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~----------~~~~~iiVTAP~~~n 273 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL----------AGSVRIIVTAPTPAN 273 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh----------cCCceEEEeCCCHHH
Confidence 344666666777777777888888654 58889999999999988777432211 114579999999988
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEC--CcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCC
Q psy6409 1493 AQQIEEETNKFGTPLGIRTVLVVG--GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570 (1832)
Q Consensus 1493 a~Qi~~~~~~~~~~~g~~v~~l~g--g~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~g 1570 (1832)
++.+..-+.+-...+|.+--.... |.... . -.....|=+-+|... . ...++||||||=-|-
T Consensus 274 v~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~-~---~~~~~~i~y~~P~~a---------~-~~~DllvVDEAAaIp--- 336 (758)
T COG1444 274 VQTLFEFAGKGLEFLGYKRKVAPDALGEIRE-V---SGDGFRIEYVPPDDA---------Q-EEADLLVVDEAAAIP--- 336 (758)
T ss_pred HHHHHHHHHHhHHHhCCccccccccccceee-e---cCCceeEEeeCcchh---------c-ccCCEEEEehhhcCC---
Confidence 877666665544444432111111 10000 0 001122444555532 1 127899999998542
Q ss_pred ChHHHHHHHHhCC
Q psy6409 1571 FEPDVQKILEYMP 1583 (1832)
Q Consensus 1571 f~~~l~~Il~~l~ 1583 (1832)
-+-+..++...+
T Consensus 337 -lplL~~l~~~~~ 348 (758)
T COG1444 337 -LPLLHKLLRRFP 348 (758)
T ss_pred -hHHHHHHHhhcC
Confidence 566666666543
No 481
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=90.81 E-value=0.71 Score=63.00 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. ....++|.|..|||||.+..--+...+.. .......+|+|+-|+..|.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~--------~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQV--------ENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc--------CCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3689999999863 34689999999999998865555544422 1123456999999999999999999886
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 78 ~ 78 (721)
T PRK11773 78 L 78 (721)
T ss_pred h
Confidence 4
No 482
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.78 E-value=0.28 Score=60.62 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHH
Q psy6409 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 790 (1832)
Q Consensus 723 ~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i 790 (1832)
+|..+.+++++++|+.+.+.+.. .+..++++||||||||... -.++.++
T Consensus 110 l~~~~~~l~~l~~~~~~~~~~~~------------------~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 110 IPAEPPKLSKLDLPAAIIDAIAP------------------QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCCCCCHHHcCCCHHHHHHHhc------------------cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 44555567777777655443321 3455999999999999853 3344443
No 483
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.76 E-value=0.68 Score=53.51 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
+..++++||+|+|||. ||..++..+..-
T Consensus 38 ~~~lll~G~~G~GKT~------------------------------------la~~~~~~~~~~---------------- 65 (226)
T TIGR03420 38 DRFLYLWGESGSGKSH------------------------------------LLQAACAAAEER---------------- 65 (226)
T ss_pred CCeEEEECCCCCCHHH------------------------------------HHHHHHHHHHhc----------------
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
+..+++.+-..+......-.-.+...++|||||+|.+... +....+..++..+.
T Consensus 66 ----------~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~--------------- 120 (226)
T TIGR03420 66 ----------GKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVR--------------- 120 (226)
T ss_pred ----------CCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH---------------
Q ss_pred HHHHhhccccccceEEEEEecCCh
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
.....++++++.+.
T Consensus 121 ----------~~~~~iIits~~~~ 134 (226)
T TIGR03420 121 ----------EAGGRLLIAGRAAP 134 (226)
T ss_pred ----------HcCCeEEEECCCCh
No 484
>PRK08727 hypothetical protein; Validated
Probab=90.69 E-value=0.81 Score=53.32 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
..+++.+|+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999654
No 485
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.54 E-value=0.69 Score=56.77 Aligned_cols=89 Identities=28% Similarity=0.373 Sum_probs=52.2
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc-hhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT-RELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt-reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
++.+.++||||.|||+.-+--+..+.. .......+||..-| |-=|..+ ++.++.-+|+.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~---------~~~~~kVaiITtDtYRIGA~EQ---Lk~Ya~im~vp~~------ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM---------LKKKKKVAIITTDTYRIGAVEQ---LKTYADIMGVPLE------ 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh---------hccCcceEEEEeccchhhHHHH---HHHHHHHhCCceE------
Confidence 788999999999999864433333321 11234456666655 4444443 3333333454433
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
+|-+|.-|.+.+. .+.+|++|.+|=|-+
T Consensus 265 ---------------vv~~~~el~~ai~----~l~~~d~ILVDTaGr 292 (407)
T COG1419 265 ---------------VVYSPKELAEAIE----ALRDCDVILVDTAGR 292 (407)
T ss_pred ---------------EecCHHHHHHHHH----HhhcCCEEEEeCCCC
Confidence 3455655555443 577788888887764
No 486
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.42 E-value=0.79 Score=65.97 Aligned_cols=123 Identities=19% Similarity=0.105 Sum_probs=78.9
Q ss_pred CcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcC
Q psy6409 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830 (1832)
Q Consensus 751 pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~ 830 (1832)
.|+-|.+||. ..+.+++|.|.-|||||.+.+--++..+... ..-..+|+|+=|+..|.++..++.+.+.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5889999997 3688999999999999998766666555321 1224699999999999998888876532
Q ss_pred CCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc--eeEEEecchh
Q psy6409 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC--TYIVLDEADR 890 (1832)
Q Consensus 831 ~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~--~~lViDEaH~ 890 (1832)
..--. -........| +..-...-|+|-..+...+.+.....-.+ .+=|+||...
T Consensus 71 ~~~~~---~p~~~~L~~q---~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 KALQQ---EPNSKHLRRQ---LALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHhc---CchhHHHHHH---HhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11000 0000111112 22234567899888876555544332223 5667998875
No 487
>PRK05642 DNA replication initiation factor; Validated
Probab=90.34 E-value=0.78 Score=53.48 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy6409 1441 RDIIGVAETGSGKTLA 1456 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla 1456 (1832)
..+++++|+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999975
No 488
>PRK12377 putative replication protein; Provisional
Probab=90.32 E-value=1.1 Score=52.45 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=27.7
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.++++.||+|+|||..+.. |...+. ..+..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~-----------~~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLL-----------AKGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHH-----------HcCCCe-EEEEHHHHHHHHHHH
Confidence 5799999999999975433 333321 123334 444556776665443
No 489
>PRK08116 hypothetical protein; Validated
Probab=90.27 E-value=2.2 Score=50.71 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=0.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-----------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 730 f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-----------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
+..+++++.+.+.=-+.-. .++-+..++..+. .+..+++.|++|+|||..+. .|.+.+..
T Consensus 70 ~~~s~i~~~~~~~tFdnf~--~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~-aia~~l~~------ 140 (268)
T PRK08116 70 KSNSLLDEKFRNSTFENFL--FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA-CIANELIE------ 140 (268)
T ss_pred HHhcCCCHHHHhcchhccc--CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHH------
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~ 878 (1832)
....++..+..+|...+...+..- +......... .+.
T Consensus 141 ------~~~~v~~~~~~~ll~~i~~~~~~~-------------~~~~~~~~~~------------------------~l~ 177 (268)
T PRK08116 141 ------KGVPVIFVNFPQLLNRIKSTYKSS-------------GKEDENEIIR------------------------SLV 177 (268)
T ss_pred ------cCCeEEEEEHHHHHHHHHHHHhcc-------------ccccHHHHHH------------------------Hhc
Q ss_pred CceeEEEecc--hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH
Q psy6409 879 QCTYIVLDEA--DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951 (1832)
Q Consensus 879 ~~~~lViDEa--H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~ 951 (1832)
.+++||||+. +...++.....+.-|-.+.. ....+|+.|-..|..+..
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~-------------------------~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYR-------------------------KGLPTIVTTNLSLEELKN 227 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHH-------------------------CCCCEEEECCCCHHHHHH
No 490
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.27 E-value=2.6 Score=55.92 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=83.3
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 742 IIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 742 ~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
.+.....+.+..-|.+.+..++.+ +-+++.|.-|=|||.+.-|.+. .+.. . .....++|.+|+.+-++
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~------~---~~~~~iiVTAP~~~nv~ 275 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAAR------L---AGSVRIIVTAPTPANVQ 275 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHH------h---cCCceEEEeCCCHHHHH
Confidence 355555666666666677777764 3588999999999999887773 2211 1 11468999999999888
Q ss_pred HHHHHHHHhcCCCCCeEEEEEc--CCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCCh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVG--GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~G--g~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+..-+.+-+..+|.+-..... |.... .-.....|-+-+|... . ...++||||||=-+. -
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a---------~-~~~DllvVDEAAaIp----l 337 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDALGEIRE----VSGDGFRIEYVPPDDA---------Q-EEADLLVVDEAAAIP----L 337 (758)
T ss_pred HHHHHHHHhHHHhCCccccccccccceee----ecCCceeEEeeCcchh---------c-ccCCEEEEehhhcCC----h
Confidence 8777766655555543221111 11100 0001233556666544 1 126899999998543 3
Q ss_pred HHHHHHHHhC
Q psy6409 898 PDVQKILEYM 907 (1832)
Q Consensus 898 ~~i~~Il~~l 907 (1832)
|.+..++...
T Consensus 338 plL~~l~~~~ 347 (758)
T COG1444 338 PLLHKLLRRF 347 (758)
T ss_pred HHHHHHHhhc
Confidence 4555555443
No 491
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.19 E-value=1 Score=65.40 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
..+++.|.+|+..++.+ +-++|.|..|+|||.+. -.++..+..+ ....+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l-------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL-------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh-------hcccCceEEEECCcHHHHHHH
Confidence 37899999999999985 46999999999999863 2333332211 112456799999998877654
No 492
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.16 E-value=2.6 Score=56.39 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.5
Q ss_pred cE-EEEcCCCchHHHHHHH
Q psy6409 1442 DI-IGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1442 dv-ii~ApTGSGKTla~~l 1459 (1832)
++ +|.++||+|||++.-.
T Consensus 782 nvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS 800 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 44 5999999999998543
No 493
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.16 E-value=2.2 Score=54.15 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=16.8
Q ss_pred CcEEEEecCCChHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpi 786 (1832)
..++++|++|+|||.+..--+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 458899999999998765544
No 494
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.15 E-value=0.18 Score=55.50 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHH
Q psy6409 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523 (1832)
Q Consensus 1444 ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~ 1523 (1832)
++.|+-|-|||.+..+.+...+.. ....++|.+|+.+=++.+.+.+..-...++++............-
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccccccccc
Q ss_pred HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhh
Q psy6409 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603 (1832)
Q Consensus 1524 ~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~ 1603 (1832)
... +..|-+..|+.+ .......++||||||=.+- -+.+..++...+
T Consensus 70 ~~~---~~~i~f~~Pd~l-------~~~~~~~DlliVDEAAaIp----~p~L~~ll~~~~-------------------- 115 (177)
T PF05127_consen 70 RFN---KQRIEFVAPDEL-------LAEKPQADLLIVDEAAAIP----LPLLKQLLRRFP-------------------- 115 (177)
T ss_dssp ------CCC--B--HHHH-------CCT----SCEEECTGGGS-----HHHHHHHHCCSS--------------------
T ss_pred ccc---cceEEEECCHHH-------HhCcCCCCEEEEechhcCC----HHHHHHHHhhCC--------------------
Q ss_pred hccccCcceEEEEEccC
Q psy6409 1604 YNSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1604 ~~~~~~~~q~v~~SATl 1620 (1832)
.++||.|.
T Consensus 116 ---------~vv~stTi 123 (177)
T PF05127_consen 116 ---------RVVFSTTI 123 (177)
T ss_dssp ---------EEEEEEEB
T ss_pred ---------EEEEEeec
No 495
>PHA02533 17 large terminase protein; Provisional
Probab=90.13 E-value=0.71 Score=60.08 Aligned_cols=121 Identities=18% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|.|+|...+..+..++-.++..+=..|||.+....++.+... ..+..+++++|+..-|..+.+.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----------~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----------NKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----------CCCCEEEEEeCCHHHHHHHHHHHHHHH
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccch
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH 1564 (1832)
..+..-.. .+-.........+.+|+.|.+.|.. .+...-.+..++|+||+|
T Consensus 129 e~~P~l~~--~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a 179 (534)
T PHA02533 129 ELLPDFLQ--PGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECA 179 (534)
T ss_pred HhCHHHhh--cceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccc
No 496
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.94 E-value=2.2 Score=52.98 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHcC---CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC
Q psy6409 756 RQAIPIGLQN---RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832 (1832)
Q Consensus 756 ~~ai~~il~g---rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~ 832 (1832)
..++..++.| .|+++.|+||+|||.+.-. +.+.+..-....
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~------------------------------------v~~~l~~~~~~~ 73 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATVKF------------------------------------VMEELEESSANV 73 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHHHH------------------------------------HHHHHHhhhccC
Q ss_pred CCeEEEEEcCCchHHHHHHHhc---CCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 833 GIRTVLVVGGLSREEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 833 ~i~v~~~~Gg~~~~~~~~~l~~---~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
..--+-+....+...-...+.. +..-.-..-..+...+..........-+||+||+|.|.+..- ..+-.|+..
T Consensus 74 ~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 74 EVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred ceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
No 497
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=89.93 E-value=1 Score=50.27 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
+++.||+|+|||...+--+...+.. |..++|+ .+-+-..++.+.+..++-..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~------------g~~v~~~-s~e~~~~~~~~~~~~~g~~~--------------- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR------------GEPGLYV-TLEESPEELIENAESLGWDL--------------- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC------------CCcEEEE-ECCCCHHHHHHHHHHcCCCh---------------
Q ss_pred HHHHHhcCCceeecCHHHHHH----------HHHccccccCCceeEEEecchhhhc---CCChHHHHHHHHhC
Q psy6409 848 QGFRLRLGCEIVIATPGRLID----------VLENRYLVLNQCTYIVLDEADRMID---MGFEPDVQKILEYM 907 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d----------~l~~~~~~l~~~~~lViDEaH~l~d---~gf~~~i~~Il~~l 907 (1832)
..........++=..|..+.. ........-...++|||||...+++ ......+..++..+
T Consensus 54 ~~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ERLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred HHHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
No 498
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.90 E-value=1.2 Score=51.42 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCC
Q psy6409 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509 (1832)
Q Consensus 1430 Q~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~ 1509 (1832)
+.+.+-..-.+.++++.+|+|+|||..+....-.....
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~------------------------------------------ 65 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER------------------------------------------ 65 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc------------------------------------------
Q ss_pred eEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC-CChHHHHHHHHhCCCCCCC
Q psy6409 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLK 1588 (1832)
Q Consensus 1510 ~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~-gf~~~l~~Il~~l~~~~~~ 1588 (1832)
+..+++.+-..+........-.+...++|||||+|.+... .....+..++..+.
T Consensus 66 --------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----- 120 (226)
T TIGR03420 66 --------------------GKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNRVR----- 120 (226)
T ss_pred --------------------CCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHH-----
Q ss_pred CCCchhhhHHHHHhhhccccCcceEEEEEccCCh
Q psy6409 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622 (1832)
Q Consensus 1589 ~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~ 1622 (1832)
.....+++|++.+.
T Consensus 121 --------------------~~~~~iIits~~~~ 134 (226)
T TIGR03420 121 --------------------EAGGRLLIAGRAAP 134 (226)
T ss_pred --------------------HcCCeEEEECCCCh
No 499
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=89.89 E-value=1.2 Score=60.58 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.++|-|.+++.. ...+++|.|..|||||.+.+--+...+.. .......+|+|+.|+..|.++...+.+..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~--------~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQN--------CGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHh--------cCCCHHHeEEEeccHHHHHHHHHHHHHHh
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCce--eEEEccchh
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT--YIVLDEADR 1565 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~--llViDEaH~ 1565 (1832)
...+ ...|.|+|-.+|...+-+.......+. +-|+|+.+.
T Consensus 71 ~~~~---------------------~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 71 GKGE---------------------ARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred Cccc---------------------cCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
No 500
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.89 E-value=0.26 Score=62.09 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred cEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCC
Q psy6409 26 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 89 (1832)
Q Consensus 26 d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~ 89 (1832)
+++++|+||||||.+|++|.|. .-...++|+-|--||........++.|.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--------------~~~~s~vv~D~Kge~~~~t~~~r~~~G~ 50 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--------------TWPGSVVVLDPKGENFELTSEHRRALGR 50 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--------------cCCCCEEEEccchhHHHHHHHHHHHcCC
Done!