Query psy6409
Match_columns 1832
No_of_seqs 1294 out of 6394
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:13:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 8.9E-95 3E-99 1024.6 47.4 1016 735-1823 66-1348(1724)
2 4f92_B U5 small nuclear ribonu 100.0 3.2E-59 1.1E-63 661.8 54.9 482 735-1265 911-1473(1724)
3 2db3_A ATP-dependent RNA helic 100.0 3.3E-58 1.1E-62 581.5 48.9 380 713-1120 41-421 (434)
4 2db3_A ATP-dependent RNA helic 100.0 3.6E-57 1.2E-61 572.0 50.7 392 1388-1808 41-433 (434)
5 2i4i_A ATP-dependent RNA helic 100.0 1.5E-53 5E-58 537.2 45.4 385 716-1121 3-397 (417)
6 2i4i_A ATP-dependent RNA helic 100.0 7.2E-53 2.5E-57 530.9 45.6 402 1390-1813 2-413 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 5.7E-52 1.9E-56 521.7 40.0 370 721-1124 30-400 (410)
8 2j0s_A ATP-dependent RNA helic 100.0 8.2E-51 2.8E-55 511.1 40.1 376 1395-1805 29-405 (410)
9 3eiq_A Eukaryotic initiation f 100.0 2E-50 6.9E-55 507.9 35.6 370 721-1124 33-404 (414)
10 1s2m_A Putative ATP-dependent 100.0 2.1E-49 7.2E-54 496.5 41.5 363 725-1122 18-380 (400)
11 1s2m_A Putative ATP-dependent 100.0 1.3E-48 4.3E-53 489.5 42.0 371 1400-1806 18-388 (400)
12 3eiq_A Eukaryotic initiation f 100.0 2.6E-49 8.8E-54 497.8 35.5 377 1397-1808 34-412 (414)
13 3fht_A ATP-dependent RNA helic 100.0 1.2E-48 4E-53 491.3 40.5 363 724-1123 21-396 (412)
14 3i5x_A ATP-dependent RNA helic 100.0 7.1E-49 2.4E-53 514.0 40.0 373 726-1121 69-463 (563)
15 3sqw_A ATP-dependent RNA helic 100.0 8.4E-49 2.9E-53 513.9 40.2 363 735-1120 28-411 (579)
16 1xti_A Probable ATP-dependent 100.0 2.7E-48 9.3E-53 484.7 41.4 358 728-1119 8-370 (391)
17 3pey_A ATP-dependent RNA helic 100.0 4.6E-48 1.6E-52 482.7 40.1 358 725-1120 2-370 (395)
18 3fmp_B ATP-dependent RNA helic 100.0 3.1E-50 1.1E-54 516.2 20.9 370 716-1122 77-462 (479)
19 1hv8_A Putative ATP-dependent 100.0 1.6E-47 5.3E-52 473.0 43.3 355 728-1123 6-361 (367)
20 1xti_A Probable ATP-dependent 100.0 1.3E-47 4.3E-52 478.7 42.5 369 1403-1806 8-381 (391)
21 1fuu_A Yeast initiation factor 100.0 1.6E-49 5.5E-54 496.1 23.7 365 722-1121 15-380 (394)
22 3pey_A ATP-dependent RNA helic 100.0 3.1E-47 1.1E-51 475.3 41.5 365 1401-1803 3-378 (395)
23 3fht_A ATP-dependent RNA helic 100.0 3.7E-47 1.3E-51 477.7 41.4 360 1400-1796 22-394 (412)
24 1fuu_A Yeast initiation factor 100.0 8.6E-49 2.9E-53 489.6 25.0 376 1398-1809 16-392 (394)
25 3sqw_A ATP-dependent RNA helic 100.0 4.2E-47 1.4E-51 497.8 40.3 362 1410-1794 28-410 (579)
26 3i5x_A ATP-dependent RNA helic 100.0 4.9E-47 1.7E-51 496.6 39.9 363 1409-1794 78-461 (563)
27 1hv8_A Putative ATP-dependent 100.0 3.3E-46 1.1E-50 461.2 44.6 354 1402-1796 5-359 (367)
28 3fmp_B ATP-dependent RNA helic 100.0 1.7E-48 5.9E-53 500.1 21.4 367 1391-1794 77-459 (479)
29 2z0m_A 337AA long hypothetical 100.0 8.9E-46 3E-50 451.9 38.5 334 735-1119 1-334 (337)
30 2v1x_A ATP-dependent DNA helic 100.0 2.4E-45 8.2E-50 476.9 37.0 345 724-1114 15-381 (591)
31 2z0m_A 337AA long hypothetical 100.0 1.3E-44 4.4E-49 441.6 39.6 334 1410-1794 1-334 (337)
32 3fho_A ATP-dependent RNA helic 100.0 2.1E-46 7.1E-51 482.6 21.1 380 705-1122 95-486 (508)
33 1oyw_A RECQ helicase, ATP-depe 100.0 7.5E-45 2.6E-49 467.9 34.2 343 727-1116 1-352 (523)
34 2v1x_A ATP-dependent DNA helic 100.0 3E-44 1E-48 466.5 37.8 346 1399-1790 15-382 (591)
35 1oyw_A RECQ helicase, ATP-depe 100.0 4.4E-44 1.5E-48 460.8 36.4 343 1402-1791 1-352 (523)
36 3fho_A ATP-dependent RNA helic 100.0 2.3E-45 7.8E-50 472.9 21.1 385 1381-1804 96-492 (508)
37 3oiy_A Reverse gyrase helicase 100.0 3.7E-44 1.3E-48 451.2 28.1 337 738-1120 9-376 (414)
38 2va8_A SSO2462, SKI2-type heli 100.0 7.3E-43 2.5E-47 469.1 35.0 333 728-1109 8-410 (715)
39 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-44 5.5E-49 483.6 17.9 461 729-1264 2-537 (702)
40 3oiy_A Reverse gyrase helicase 100.0 5E-43 1.7E-47 440.9 29.5 337 1413-1795 9-376 (414)
41 1tf5_A Preprotein translocase 100.0 1.6E-42 5.4E-47 447.0 33.6 384 696-1109 33-547 (844)
42 2zj8_A DNA helicase, putative 100.0 5.2E-43 1.8E-47 470.3 26.9 332 729-1108 2-388 (720)
43 3l9o_A ATP-dependent RNA helic 100.0 7.2E-43 2.5E-47 480.1 27.0 332 727-1108 161-598 (1108)
44 2va8_A SSO2462, SKI2-type heli 100.0 3.4E-41 1.1E-45 453.0 33.5 369 1403-1820 8-450 (715)
45 1tf5_A Preprotein translocase 100.0 1.2E-40 4.2E-45 429.5 36.0 384 1371-1784 33-547 (844)
46 2zj8_A DNA helicase, putative 100.0 2.1E-41 7.2E-46 454.7 28.8 366 1404-1820 2-428 (720)
47 2p6r_A Afuhel308 helicase; pro 100.0 7.2E-42 2.5E-46 457.9 21.9 369 1404-1821 2-430 (702)
48 2fsf_A Preprotein translocase 100.0 1.7E-41 5.8E-46 435.7 23.5 381 696-1109 24-585 (853)
49 3l9o_A ATP-dependent RNA helic 100.0 4.1E-41 1.4E-45 462.8 28.9 330 1403-1782 162-597 (1108)
50 4ddu_A Reverse gyrase; topoiso 100.0 9E-41 3.1E-45 459.2 29.8 332 745-1120 74-503 (1104)
51 4a2p_A RIG-I, retinoic acid in 100.0 1.2E-40 4E-45 435.6 24.2 334 747-1109 4-510 (556)
52 2ykg_A Probable ATP-dependent 100.0 6.7E-41 2.3E-45 449.8 21.7 348 740-1115 3-524 (696)
53 4ddu_A Reverse gyrase; topoiso 100.0 5.6E-40 1.9E-44 451.3 30.8 332 1420-1795 74-503 (1104)
54 2xgj_A ATP-dependent RNA helic 100.0 2.4E-39 8.2E-44 441.6 36.4 312 744-1107 81-499 (1010)
55 1gku_B Reverse gyrase, TOP-RG; 100.0 4.5E-41 1.5E-45 463.1 19.6 335 741-1121 48-468 (1054)
56 3tbk_A RIG-I helicase domain; 100.0 1.2E-39 4.1E-44 425.7 27.7 338 749-1115 3-515 (555)
57 2xgj_A ATP-dependent RNA helic 100.0 1.1E-38 3.6E-43 435.3 37.9 320 1419-1789 81-507 (1010)
58 4a2p_A RIG-I, retinoic acid in 100.0 7.8E-40 2.7E-44 427.8 25.4 334 1422-1784 4-510 (556)
59 1nkt_A Preprotein translocase 100.0 6.8E-39 2.3E-43 411.2 31.5 343 745-1109 107-619 (922)
60 2fsf_A Preprotein translocase 100.0 1.4E-39 4.8E-44 418.0 24.6 378 1372-1784 25-585 (853)
61 4a2q_A RIG-I, retinoic acid in 100.0 2.6E-39 8.7E-44 438.6 27.0 336 745-1109 243-751 (797)
62 2ykg_A Probable ATP-dependent 100.0 1.6E-39 5.6E-44 436.3 22.8 341 1415-1784 3-518 (696)
63 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-39 3.7E-44 449.4 21.4 332 1419-1796 52-468 (1054)
64 3tbk_A RIG-I helicase domain; 100.0 2.4E-39 8.4E-44 422.8 22.5 335 1425-1788 4-513 (555)
65 4a2q_A RIG-I, retinoic acid in 100.0 2E-38 6.9E-43 429.8 29.2 336 1420-1784 243-751 (797)
66 4a4z_A Antiviral helicase SKI2 100.0 4.2E-38 1.4E-42 429.6 32.3 309 746-1105 36-490 (997)
67 4a4z_A Antiviral helicase SKI2 100.0 1.3E-37 4.5E-42 424.7 33.4 310 1420-1780 35-490 (997)
68 1nkt_A Preprotein translocase 100.0 5.6E-37 1.9E-41 393.6 34.5 343 1420-1784 107-619 (922)
69 4a2w_A RIG-I, retinoic acid in 100.0 3.8E-38 1.3E-42 431.0 24.7 336 745-1109 243-751 (936)
70 1wp9_A ATP-dependent RNA helic 100.0 1.5E-36 5.3E-41 388.6 32.3 318 750-1108 9-476 (494)
71 4a2w_A RIG-I, retinoic acid in 100.0 1.5E-37 5E-42 425.3 23.9 336 1420-1784 243-751 (936)
72 1wp9_A ATP-dependent RNA helic 100.0 2.7E-36 9.3E-41 386.3 33.1 320 1425-1785 9-478 (494)
73 1gm5_A RECG; helicase, replica 100.0 2.4E-37 8.2E-42 409.1 23.4 326 737-1115 356-705 (780)
74 4gl2_A Interferon-induced heli 100.0 1E-37 3.5E-42 419.1 17.6 339 749-1108 6-520 (699)
75 4gl2_A Interferon-induced heli 100.0 4E-37 1.4E-41 413.3 19.1 335 1425-1781 7-517 (699)
76 2whx_A Serine protease/ntpase/ 100.0 4.2E-38 1.4E-42 409.9 8.7 315 733-1119 155-493 (618)
77 1gm5_A RECG; helicase, replica 100.0 1.4E-36 4.8E-41 401.8 22.7 323 1412-1787 356-702 (780)
78 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-36 4.5E-41 405.4 21.4 335 724-1108 68-444 (773)
79 1wrb_A DJVLGB; RNA helicase, D 100.0 1.8E-36 6.3E-41 354.7 20.1 216 2-285 38-253 (253)
80 3fe2_A Probable ATP-dependent 100.0 1.2E-35 4.2E-40 345.3 26.2 238 702-968 3-240 (242)
81 2jlq_A Serine protease subunit 100.0 3.6E-37 1.2E-41 390.2 13.9 289 747-1107 1-311 (451)
82 2eyq_A TRCF, transcription-rep 100.0 5.9E-35 2E-39 404.3 37.1 323 734-1108 587-923 (1151)
83 2eyq_A TRCF, transcription-rep 100.0 3.3E-34 1.1E-38 396.9 36.6 322 1410-1783 588-923 (1151)
84 3fmo_B ATP-dependent RNA helic 100.0 7.9E-36 2.7E-40 357.2 17.1 187 2-272 107-298 (300)
85 3iuy_A Probable ATP-dependent 100.0 1.4E-35 5E-40 341.5 17.6 194 2-271 35-228 (228)
86 2whx_A Serine protease/ntpase/ 100.0 1.5E-36 5.1E-41 395.3 10.4 326 1408-1806 155-504 (618)
87 3o8b_A HCV NS3 protease/helica 100.0 3.9E-36 1.3E-40 386.5 13.7 281 750-1111 217-518 (666)
88 2oca_A DAR protein, ATP-depend 100.0 1.3E-35 4.3E-40 383.8 17.7 311 748-1105 111-453 (510)
89 2wv9_A Flavivirin protease NS2 100.0 6E-37 2E-41 401.2 3.5 306 742-1118 202-547 (673)
90 2jlq_A Serine protease subunit 100.0 1.5E-35 5E-40 375.5 14.2 289 1422-1782 1-311 (451)
91 2oca_A DAR protein, ATP-depend 100.0 3.5E-35 1.2E-39 379.6 18.0 310 1424-1780 112-453 (510)
92 1yks_A Genome polyprotein [con 100.0 1.5E-36 5.2E-41 382.7 4.6 278 762-1118 5-313 (440)
93 3ber_A Probable ATP-dependent 100.0 1.1E-34 3.8E-39 338.4 19.0 191 2-273 58-249 (249)
94 3fe2_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 328.7 26.4 238 1377-1643 3-240 (242)
95 3ly5_A ATP-dependent RNA helic 100.0 1E-34 3.6E-39 341.2 17.5 189 2-267 69-258 (262)
96 1yks_A Genome polyprotein [con 100.0 2.1E-35 7.3E-40 372.2 8.6 292 1436-1807 4-326 (440)
97 2fwr_A DNA repair protein RAD2 100.0 2.1E-34 7E-39 368.8 17.0 293 749-1107 92-454 (472)
98 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-33 5.6E-38 375.6 26.0 335 1400-1784 69-445 (773)
99 3o8b_A HCV NS3 protease/helica 100.0 9.9E-35 3.4E-39 373.5 13.6 280 1426-1786 218-518 (666)
100 2wv9_A Flavivirin protease NS2 100.0 7.5E-36 2.6E-40 390.7 3.1 307 1417-1794 202-548 (673)
101 1wrb_A DJVLGB; RNA helicase, D 100.0 1.9E-33 6.7E-38 329.1 22.6 246 712-978 5-252 (253)
102 3bor_A Human initiation factor 100.0 3.1E-34 1.1E-38 332.3 15.7 191 2-273 45-236 (237)
103 2z83_A Helicase/nucleoside tri 100.0 9.8E-35 3.4E-39 368.4 11.2 272 760-1107 16-313 (459)
104 2pl3_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 327.5 18.8 194 2-273 40-234 (236)
105 2oxc_A Probable ATP-dependent 100.0 8.8E-34 3E-38 327.0 17.4 189 2-272 39-229 (230)
106 1q0u_A Bstdead; DEAD protein, 100.0 4.7E-34 1.6E-38 326.8 14.3 192 2-274 19-214 (219)
107 2fwr_A DNA repair protein RAD2 100.0 9.9E-34 3.4E-38 362.4 17.5 293 1425-1783 93-455 (472)
108 1vec_A ATP-dependent RNA helic 100.0 3.6E-33 1.2E-37 316.1 19.7 187 2-269 18-205 (206)
109 3dkp_A Probable ATP-dependent 100.0 1.7E-33 5.8E-38 327.9 15.2 195 2-275 44-244 (245)
110 3iuy_A Probable ATP-dependent 100.0 2.5E-32 8.4E-37 314.5 23.6 218 719-965 10-228 (228)
111 2z83_A Helicase/nucleoside tri 100.0 1E-33 3.5E-38 359.1 11.7 273 1434-1782 15-313 (459)
112 2v6i_A RNA helicase; membrane, 100.0 7.8E-33 2.7E-37 348.2 19.1 270 764-1104 1-288 (431)
113 2gxq_A Heat resistant RNA depe 100.0 1.1E-32 3.7E-37 312.3 18.4 192 2-273 16-207 (207)
114 1qde_A EIF4A, translation init 100.0 9.9E-33 3.4E-37 316.8 17.0 193 2-276 29-221 (224)
115 3fmo_B ATP-dependent RNA helic 100.0 5.5E-32 1.9E-36 324.0 22.5 216 714-966 75-298 (300)
116 3dkp_A Probable ATP-dependent 100.0 6E-32 2.1E-36 314.8 22.1 230 707-968 4-243 (245)
117 3rc3_A ATP-dependent RNA helic 100.0 3.8E-32 1.3E-36 354.4 21.0 285 759-1115 149-452 (677)
118 3bor_A Human initiation factor 100.0 1.3E-31 4.5E-36 310.3 22.4 214 719-966 21-235 (237)
119 3ber_A Probable ATP-dependent 100.0 2.5E-31 8.6E-36 310.0 23.9 209 724-966 39-248 (249)
120 2v6i_A RNA helicase; membrane, 100.0 8.8E-32 3E-36 338.6 20.3 271 1439-1780 1-289 (431)
121 2oxc_A Probable ATP-dependent 100.0 3.7E-31 1.3E-35 305.0 23.5 212 719-965 15-228 (230)
122 2pl3_A Probable ATP-dependent 100.0 1.1E-30 3.8E-35 302.4 26.8 212 724-966 21-233 (236)
123 1t6n_A Probable ATP-dependent 100.0 5.6E-32 1.9E-36 309.7 15.4 189 2-271 29-220 (220)
124 1q0u_A Bstdead; DEAD protein, 100.0 3.6E-31 1.2E-35 302.8 21.1 208 726-967 2-213 (219)
125 1vec_A ATP-dependent RNA helic 100.0 1.4E-30 4.8E-35 294.7 25.3 202 728-963 3-205 (206)
126 3h1t_A Type I site-specific re 100.0 3.4E-31 1.2E-35 348.1 22.0 305 749-1096 177-545 (590)
127 1qde_A EIF4A, translation init 100.0 1.3E-30 4.3E-35 299.3 23.8 212 721-967 7-218 (224)
128 3h1t_A Type I site-specific re 100.0 2.9E-31 1E-35 348.7 20.8 305 1424-1771 177-545 (590)
129 3ly5_A ATP-dependent RNA helic 100.0 1.4E-30 4.9E-35 306.0 23.7 203 729-961 53-258 (262)
130 3rc3_A ATP-dependent RNA helic 100.0 1.6E-30 5.6E-35 339.0 25.2 286 1434-1791 149-453 (677)
131 2gxq_A Heat resistant RNA depe 100.0 7.1E-30 2.4E-34 289.1 24.5 204 729-965 2-205 (207)
132 3jux_A Protein translocase sub 100.0 3E-29 1E-33 314.9 30.2 342 746-1109 72-589 (822)
133 1t6n_A Probable ATP-dependent 100.0 7E-30 2.4E-34 292.2 22.3 211 720-964 6-219 (220)
134 3jux_A Protein translocase sub 100.0 4.9E-28 1.7E-32 304.1 38.6 342 1421-1784 72-589 (822)
135 3dmq_A RNA polymerase-associat 100.0 1.6E-29 5.5E-34 346.2 22.1 319 1424-1781 152-612 (968)
136 3dmq_A RNA polymerase-associat 100.0 1.6E-29 5.4E-34 346.2 21.2 333 749-1119 152-625 (968)
137 1z63_A Helicase of the SNF2/RA 100.0 9.8E-28 3.3E-32 309.2 23.6 310 1424-1783 36-454 (500)
138 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-27 4.6E-32 323.6 25.4 323 736-1105 250-707 (1038)
139 1z63_A Helicase of the SNF2/RA 100.0 1.4E-27 4.6E-32 307.8 23.2 309 749-1107 36-453 (500)
140 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2E-27 7E-32 321.8 25.8 311 1424-1781 270-708 (1038)
141 2ipc_A Preprotein translocase 99.9 4.2E-25 1.4E-29 282.1 32.9 341 746-1108 76-699 (997)
142 1c4o_A DNA nucleotide excision 99.9 4.1E-25 1.4E-29 290.9 27.9 175 935-1118 380-561 (664)
143 2p6n_A ATP-dependent RNA helic 99.9 2.5E-25 8.6E-30 247.9 19.7 182 1628-1811 8-190 (191)
144 1c4o_A DNA nucleotide excision 99.9 1.3E-24 4.4E-29 286.1 29.0 173 1610-1791 380-559 (664)
145 2ipc_A Preprotein translocase 99.9 2E-23 6.7E-28 266.9 38.4 341 1421-1783 76-699 (997)
146 1z3i_X Similar to RAD54-like; 99.9 5.7E-24 1.9E-28 280.5 32.2 321 1425-1782 55-528 (644)
147 1z3i_X Similar to RAD54-like; 99.9 1.1E-23 3.7E-28 277.9 33.7 322 749-1107 54-528 (644)
148 3mwy_W Chromo domain-containin 99.9 5.1E-24 1.7E-28 287.9 28.1 327 1424-1792 235-696 (800)
149 3mwy_W Chromo domain-containin 99.9 7.7E-24 2.6E-28 286.2 29.8 317 749-1107 235-684 (800)
150 2d7d_A Uvrabc system protein B 99.9 4.5E-24 1.6E-28 280.8 24.7 175 935-1118 386-567 (661)
151 2p6n_A ATP-dependent RNA helic 99.9 3.4E-24 1.2E-28 238.8 18.2 166 953-1119 8-174 (191)
152 2d7d_A Uvrabc system protein B 99.9 3.3E-23 1.1E-27 272.6 28.5 172 1610-1790 386-564 (661)
153 2hjv_A ATP-dependent RNA helic 99.9 1.1E-23 3.7E-28 229.0 19.6 152 971-1122 6-157 (163)
154 2hjv_A ATP-dependent RNA helic 99.9 1.3E-23 4.4E-28 228.4 20.1 151 1645-1795 5-155 (163)
155 2jgn_A DBX, DDX3, ATP-dependen 99.9 9E-24 3.1E-28 234.3 18.8 164 1645-1809 15-179 (185)
156 1fuk_A Eukaryotic initiation f 99.9 1.1E-23 3.9E-28 229.3 17.2 160 1649-1809 3-163 (165)
157 1t5i_A C_terminal domain of A 99.9 1.4E-23 4.8E-28 230.1 17.3 160 1647-1807 3-163 (172)
158 2rb4_A ATP-dependent RNA helic 99.9 2.9E-23 9.8E-28 228.5 18.5 152 971-1122 4-162 (175)
159 2rb4_A ATP-dependent RNA helic 99.9 3.5E-23 1.2E-27 227.8 18.9 150 1646-1795 4-160 (175)
160 1t5i_A C_terminal domain of A 99.9 2.7E-23 9.2E-28 227.8 16.8 150 972-1121 3-153 (172)
161 1fuk_A Eukaryotic initiation f 99.9 4.3E-23 1.5E-27 224.8 17.1 149 974-1122 3-152 (165)
162 3eaq_A Heat resistant RNA depe 99.9 5.2E-23 1.8E-27 233.5 17.4 148 975-1122 6-153 (212)
163 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.5E-23 2.2E-27 227.4 17.7 152 970-1121 15-167 (185)
164 3eaq_A Heat resistant RNA depe 99.9 1.9E-22 6.4E-27 228.9 18.2 146 1650-1795 6-151 (212)
165 3i32_A Heat resistant RNA depe 99.9 2.2E-22 7.4E-27 238.9 16.6 149 974-1122 2-150 (300)
166 3i32_A Heat resistant RNA depe 99.9 7.2E-22 2.5E-26 234.5 16.9 147 1649-1795 2-148 (300)
167 3llm_A ATP-dependent RNA helic 99.9 3.6E-22 1.2E-26 230.6 9.5 165 9-214 61-228 (235)
168 3b6e_A Interferon-induced heli 99.9 4.1E-22 1.4E-26 226.6 9.0 150 5-161 29-185 (216)
169 2yjt_D ATP-dependent RNA helic 99.8 4.7E-23 1.6E-27 225.6 0.0 147 974-1120 3-150 (170)
170 2yjt_D ATP-dependent RNA helic 99.8 5.7E-23 2E-27 224.9 0.0 146 1649-1794 3-149 (170)
171 3b6e_A Interferon-induced heli 99.8 3.2E-20 1.1E-24 210.9 13.0 149 745-900 28-183 (216)
172 3llm_A ATP-dependent RNA helic 99.8 7.2E-20 2.5E-24 211.3 16.0 181 738-961 49-232 (235)
173 2vl7_A XPD; helicase, unknown 99.8 7.3E-20 2.5E-24 236.4 17.3 321 746-1104 4-518 (540)
174 2vl7_A XPD; helicase, unknown 99.8 4.3E-19 1.5E-23 229.2 18.8 323 1421-1781 4-520 (540)
175 1rif_A DAR protein, DNA helica 99.8 1.2E-19 3.9E-24 215.7 11.4 153 9-207 113-265 (282)
176 1rif_A DAR protein, DNA helica 99.8 2.5E-19 8.7E-24 212.8 9.0 158 749-952 112-269 (282)
177 3crv_A XPD/RAD3 related DNA he 99.8 1.1E-16 3.6E-21 207.7 31.7 307 747-1079 1-473 (551)
178 3crv_A XPD/RAD3 related DNA he 99.7 3.5E-16 1.2E-20 202.8 32.3 336 1422-1781 1-530 (551)
179 2fz4_A DNA repair protein RAD2 99.7 1.2E-16 4.2E-21 184.2 11.5 139 8-207 92-231 (237)
180 2fz4_A DNA repair protein RAD2 99.6 7.6E-16 2.6E-20 177.5 15.8 138 749-947 92-230 (237)
181 4a15_A XPD helicase, ATP-depen 99.6 7.2E-15 2.5E-19 191.8 23.8 83 750-843 3-89 (620)
182 4a15_A XPD helicase, ATP-depen 99.6 3.5E-14 1.2E-18 185.4 26.6 82 1425-1517 3-88 (620)
183 1z5z_A Helicase of the SNF2/RA 99.6 4.5E-15 1.5E-19 174.1 11.1 126 982-1107 92-224 (271)
184 1z5z_A Helicase of the SNF2/RA 99.6 5E-15 1.7E-19 173.7 10.4 125 1658-1782 93-224 (271)
185 1w36_D RECD, exodeoxyribonucle 98.9 7.9E-10 2.7E-14 144.3 5.6 136 11-169 151-289 (608)
186 1w36_D RECD, exodeoxyribonucle 98.5 1.8E-07 6.2E-12 122.1 9.2 134 752-908 151-287 (608)
187 4b3f_X DNA-binding protein smu 97.5 0.00012 4E-09 96.7 8.3 68 749-828 188-256 (646)
188 4b3f_X DNA-binding protein smu 97.4 0.00026 8.9E-09 93.3 10.0 68 1424-1503 188-256 (646)
189 2gk6_A Regulator of nonsense t 97.4 0.00057 2E-08 89.6 12.4 70 748-828 178-247 (624)
190 2gk6_A Regulator of nonsense t 97.3 0.00086 2.9E-08 87.9 12.6 70 1423-1503 178-247 (624)
191 2xzl_A ATP-dependent helicase 97.2 0.00091 3.1E-08 89.5 11.2 71 747-828 357-427 (802)
192 3e1s_A Exodeoxyribonuclease V, 97.1 0.0012 4E-08 85.3 11.5 65 749-825 188-252 (574)
193 2xzl_A ATP-dependent helicase 97.1 0.0014 4.7E-08 87.8 12.0 70 1423-1503 358-427 (802)
194 2wjy_A Regulator of nonsense t 97.1 0.0012 3.9E-08 88.5 11.0 71 747-828 353-423 (800)
195 3upu_A ATP-dependent DNA helic 97.0 0.001 3.5E-08 83.9 8.9 69 746-825 21-94 (459)
196 2wjy_A Regulator of nonsense t 97.0 0.0018 6.2E-08 86.5 11.5 70 1423-1503 354-423 (800)
197 3upu_A ATP-dependent DNA helic 97.0 0.0022 7.4E-08 80.9 11.6 69 1421-1500 21-94 (459)
198 3pgw_S U1-70K; protein-RNA com 97.0 0.00041 1.4E-08 86.5 4.7 7 268-274 104-110 (437)
199 3lfu_A DNA helicase II; SF1 he 96.9 0.025 8.4E-07 74.6 22.0 71 749-829 8-78 (647)
200 3e1s_A Exodeoxyribonuclease V, 96.9 0.0019 6.6E-08 83.3 10.7 64 1425-1500 189-252 (574)
201 3lfu_A DNA helicase II; SF1 he 96.5 0.057 1.9E-06 71.1 20.9 71 1424-1504 8-78 (647)
202 2o0j_A Terminase, DNA packagin 96.1 0.032 1.1E-06 67.9 13.4 118 750-892 163-286 (385)
203 2o0j_A Terminase, DNA packagin 95.2 0.084 2.9E-06 64.2 12.5 118 1425-1567 163-286 (385)
204 3cpe_A Terminase, DNA packagin 95.1 0.054 1.8E-06 70.4 10.9 119 750-892 163-286 (592)
205 3cpe_A Terminase, DNA packagin 94.3 0.13 4.5E-06 66.8 11.5 119 1425-1567 163-286 (592)
206 1uaa_A REP helicase, protein ( 94.2 0.065 2.2E-06 70.9 8.7 110 750-890 2-113 (673)
207 3vkw_A Replicase large subunit 93.9 0.071 2.4E-06 65.6 7.5 86 767-894 163-248 (446)
208 1pjr_A PCRA; DNA repair, DNA r 93.9 0.11 3.6E-06 69.3 9.7 110 749-890 10-121 (724)
209 3ec2_A DNA replication protein 93.5 0.4 1.4E-05 51.6 11.9 32 752-783 16-56 (180)
210 2orw_A Thymidine kinase; TMTK, 93.4 0.075 2.6E-06 57.9 5.9 39 765-815 3-41 (184)
211 3hgt_A HDA1 complex subunit 3; 93.4 0.22 7.6E-06 58.5 10.1 120 984-1108 107-238 (328)
212 2zpa_A Uncharacterized protein 93.4 0.22 7.6E-06 64.2 11.0 102 750-906 175-278 (671)
213 3hgt_A HDA1 complex subunit 3; 93.4 0.27 9.4E-06 57.7 10.8 123 1659-1786 107-241 (328)
214 3te6_A Regulatory protein SIR3 93.1 0.69 2.4E-05 54.7 13.9 21 1439-1459 44-64 (318)
215 3ec2_A DNA replication protein 93.0 0.25 8.7E-06 53.2 9.2 32 1427-1458 16-56 (180)
216 1uaa_A REP helicase, protein ( 92.8 0.15 5E-06 67.5 8.3 70 1425-1504 2-71 (673)
217 2b8t_A Thymidine kinase; deoxy 92.8 0.14 4.7E-06 57.5 6.9 90 765-891 12-101 (223)
218 1xx6_A Thymidine kinase; NESG, 92.4 0.12 4E-06 56.7 5.6 39 765-815 8-46 (191)
219 3vkw_A Replicase large subunit 92.2 0.13 4.3E-06 63.4 6.1 84 1443-1568 164-247 (446)
220 3te6_A Regulatory protein SIR3 91.9 0.76 2.6E-05 54.3 12.1 20 765-784 45-64 (318)
221 1xx6_A Thymidine kinase; NESG, 91.7 0.17 5.8E-06 55.4 5.8 39 1440-1490 8-46 (191)
222 2orw_A Thymidine kinase; TMTK, 91.4 0.2 6.7E-06 54.6 5.9 39 1440-1490 3-41 (184)
223 2kjq_A DNAA-related protein; s 91.2 0.11 3.9E-06 54.4 3.6 18 23-40 35-52 (149)
224 2b8t_A Thymidine kinase; deoxy 91.1 0.24 8E-06 55.6 6.3 90 1440-1566 12-101 (223)
225 2zpa_A Uncharacterized protein 90.7 0.33 1.1E-05 62.7 7.8 103 1425-1582 175-279 (671)
226 3syl_A Protein CBBX; photosynt 90.4 0.77 2.6E-05 54.0 10.3 19 765-783 67-85 (309)
227 3kl4_A SRP54, signal recogniti 90.4 1 3.5E-05 55.5 11.5 21 766-786 98-118 (433)
228 3u4q_A ATP-dependent helicase/ 90.3 0.32 1.1E-05 68.7 7.8 126 749-889 9-137 (1232)
229 3h4m_A Proteasome-activating n 90.2 0.32 1.1E-05 56.6 6.6 54 726-782 12-68 (285)
230 4b4t_M 26S protease regulatory 89.9 0.18 6.2E-06 62.1 4.4 56 724-782 174-232 (434)
231 1d2n_A N-ethylmaleimide-sensit 89.9 2.1 7.2E-05 49.3 13.3 18 766-783 65-82 (272)
232 1pjr_A PCRA; DNA repair, DNA r 89.8 0.45 1.5E-05 63.3 8.4 70 1424-1503 10-79 (724)
233 1jbk_A CLPB protein; beta barr 89.6 2 6.8E-05 45.8 12.0 19 765-783 43-61 (195)
234 2kjq_A DNAA-related protein; s 89.5 0.31 1.1E-05 51.0 5.2 19 764-782 35-53 (149)
235 1l8q_A Chromosomal replication 89.0 0.96 3.3E-05 53.7 9.7 18 766-783 38-55 (324)
236 1l8q_A Chromosomal replication 88.6 0.77 2.6E-05 54.5 8.5 19 1440-1458 37-55 (324)
237 2j9r_A Thymidine kinase; TK1, 88.4 0.5 1.7E-05 52.3 6.0 37 768-816 31-67 (214)
238 2v1u_A Cell division control p 88.1 1.7 5.7E-05 52.6 11.3 19 1440-1458 44-62 (387)
239 1d2n_A N-ethylmaleimide-sensit 88.1 2.7 9.2E-05 48.3 12.5 18 1441-1458 65-82 (272)
240 2v1u_A Cell division control p 88.0 1.5 5.2E-05 52.9 10.8 19 765-783 44-62 (387)
241 1a5t_A Delta prime, HOLB; zinc 88.0 1.4 4.8E-05 52.6 10.2 33 752-784 4-43 (334)
242 3bos_A Putative DNA replicatio 87.8 0.33 1.1E-05 54.5 4.3 19 765-783 52-70 (242)
243 4b4t_J 26S protease regulatory 87.7 0.44 1.5E-05 57.9 5.5 54 726-782 143-199 (405)
244 3eie_A Vacuolar protein sortin 87.6 1.5 5E-05 52.1 10.0 52 726-783 13-69 (322)
245 1g5t_A COB(I)alamin adenosyltr 87.5 5 0.00017 43.7 13.1 38 766-815 29-66 (196)
246 4b4t_M 26S protease regulatory 87.5 0.54 1.8E-05 57.9 6.2 55 1400-1457 175-232 (434)
247 4b4t_J 26S protease regulatory 87.2 0.59 2E-05 56.8 6.2 54 1401-1457 143-199 (405)
248 2qz4_A Paraplegin; AAA+, SPG7, 87.1 1.2 4.2E-05 50.7 8.7 19 765-783 39-57 (262)
249 3u4q_A ATP-dependent helicase/ 86.9 0.68 2.3E-05 65.3 7.5 71 1425-1503 10-80 (1232)
250 1xwi_A SKD1 protein; VPS4B, AA 86.8 2.5 8.6E-05 50.1 11.4 52 726-783 7-63 (322)
251 4b4t_L 26S protease subunit RP 86.4 0.36 1.2E-05 59.5 3.8 55 725-782 175-232 (437)
252 3dm5_A SRP54, signal recogniti 86.1 3.1 0.00011 51.3 11.8 57 766-837 101-159 (443)
253 2j9r_A Thymidine kinase; TK1, 85.8 0.78 2.7E-05 50.8 5.7 37 1443-1491 31-67 (214)
254 4b4t_K 26S protease regulatory 85.7 0.8 2.8E-05 56.3 6.4 54 726-782 167-223 (428)
255 4b4t_H 26S protease regulatory 85.5 0.56 1.9E-05 57.8 4.8 52 726-782 204-260 (467)
256 1jbk_A CLPB protein; beta barr 85.0 6 0.00021 41.9 12.5 18 1440-1457 43-60 (195)
257 3syl_A Protein CBBX; photosynt 84.9 1.6 5.3E-05 51.3 8.3 19 1440-1458 67-85 (309)
258 2qgz_A Helicase loader, putati 84.8 2.1 7.3E-05 50.4 9.3 19 765-783 152-170 (308)
259 3e2i_A Thymidine kinase; Zn-bi 84.8 0.56 1.9E-05 51.8 3.9 40 765-816 28-67 (219)
260 2chg_A Replication factor C sm 84.7 5 0.00017 43.7 12.0 17 766-782 39-55 (226)
261 2qby_B CDC6 homolog 3, cell di 84.7 2.3 7.9E-05 51.4 9.9 18 766-783 46-63 (384)
262 1fnn_A CDC6P, cell division co 84.6 4.5 0.00015 48.8 12.5 16 767-782 46-61 (389)
263 2orv_A Thymidine kinase; TP4A 84.5 2.2 7.5E-05 47.7 8.5 40 765-816 19-58 (234)
264 3bos_A Putative DNA replicatio 84.4 0.67 2.3E-05 51.9 4.6 19 1439-1457 51-69 (242)
265 4b4t_I 26S protease regulatory 84.1 0.55 1.9E-05 57.3 3.8 55 725-782 176-233 (437)
266 2qby_A CDC6 homolog 1, cell di 83.9 2.4 8.3E-05 51.0 9.6 19 765-783 45-63 (386)
267 4b4t_K 26S protease regulatory 83.9 5.2 0.00018 49.1 12.4 54 1401-1457 167-223 (428)
268 4b4t_I 26S protease regulatory 83.6 1.9 6.5E-05 52.7 8.2 55 1400-1457 176-233 (437)
269 3kl4_A SRP54, signal recogniti 83.5 3 0.0001 51.4 10.1 19 1441-1459 98-116 (433)
270 3b9p_A CG5977-PA, isoform A; A 83.4 0.92 3.2E-05 53.0 5.3 19 765-783 54-72 (297)
271 2chg_A Replication factor C sm 83.2 5.7 0.00019 43.3 11.5 17 1441-1457 39-55 (226)
272 2z4s_A Chromosomal replication 83.1 3.1 0.00011 51.6 10.2 19 1440-1458 130-148 (440)
273 2qgz_A Helicase loader, putati 82.9 3.2 0.00011 48.9 9.7 19 1440-1458 152-170 (308)
274 3e2i_A Thymidine kinase; Zn-bi 82.8 0.84 2.9E-05 50.5 4.2 40 1440-1491 28-67 (219)
275 1w4r_A Thymidine kinase; type 82.5 1.2 4.3E-05 48.4 5.4 38 765-814 20-57 (195)
276 1sxj_A Activator 1 95 kDa subu 82.1 1.7 5.8E-05 55.2 7.4 18 766-783 78-95 (516)
277 3pfi_A Holliday junction ATP-d 81.9 2.5 8.5E-05 50.3 8.4 18 766-783 56-73 (338)
278 2qby_A CDC6 homolog 1, cell di 81.8 3.4 0.00012 49.7 9.8 19 1440-1458 45-63 (386)
279 4b4t_H 26S protease regulatory 81.7 2.1 7.3E-05 52.7 7.7 54 1401-1457 204-260 (467)
280 2qby_B CDC6 homolog 3, cell di 81.5 2.5 8.4E-05 51.2 8.4 18 1440-1457 45-62 (384)
281 1fnn_A CDC6P, cell division co 81.2 6.2 0.00021 47.6 11.8 16 1442-1457 46-61 (389)
282 2q0z_X Protein Pro2281; SEC63, 81.0 0.17 5.9E-06 60.7 -2.2 118 1203-1320 13-170 (339)
283 3vfd_A Spastin; ATPase, microt 80.7 1.3 4.4E-05 54.1 5.4 19 765-783 148-166 (389)
284 1sxj_A Activator 1 95 kDa subu 80.7 2.1 7.3E-05 54.3 7.6 18 1441-1458 78-95 (516)
285 4b4t_L 26S protease subunit RP 80.6 2 6.8E-05 53.0 7.0 55 1400-1457 175-232 (437)
286 2z4s_A Chromosomal replication 80.1 4.9 0.00017 49.8 10.4 18 24-41 130-147 (440)
287 1g5t_A COB(I)alamin adenosyltr 79.9 15 0.00052 39.9 12.8 37 1441-1489 29-65 (196)
288 3u61_B DNA polymerase accessor 79.8 3 0.0001 49.3 8.1 15 1553-1567 104-118 (324)
289 1a5t_A Delta prime, HOLB; zinc 79.1 4.2 0.00014 48.4 9.1 34 1426-1459 3-43 (334)
290 3d8b_A Fidgetin-like protein 1 78.9 2.6 9E-05 50.7 7.3 19 765-783 117-135 (357)
291 1w4r_A Thymidine kinase; type 78.5 1.7 5.8E-05 47.3 4.8 38 1440-1489 20-57 (195)
292 3vfd_A Spastin; ATPase, microt 78.5 3.3 0.00011 50.5 8.1 19 1440-1458 148-166 (389)
293 2orv_A Thymidine kinase; TP4A 78.4 4.7 0.00016 45.0 8.4 39 1440-1490 19-57 (234)
294 3u61_B DNA polymerase accessor 78.3 2.6 8.9E-05 49.8 6.9 15 878-892 104-118 (324)
295 3im1_A Protein SNU246, PRE-mRN 78.2 0.32 1.1E-05 58.0 -1.1 116 1205-1321 11-167 (328)
296 3hjh_A Transcription-repair-co 78.0 2.5 8.5E-05 53.0 6.8 116 23-157 13-152 (483)
297 2px0_A Flagellar biosynthesis 78.0 15 0.0005 42.9 13.1 22 765-786 105-126 (296)
298 3pfi_A Holliday junction ATP-d 77.9 3 0.0001 49.5 7.4 17 1441-1457 56-72 (338)
299 3t15_A Ribulose bisphosphate c 76.2 1.6 5.4E-05 51.1 4.1 18 766-783 37-54 (293)
300 1iqp_A RFCS; clamp loader, ext 76.2 8.7 0.0003 45.0 10.7 17 767-783 48-64 (327)
301 3t15_A Ribulose bisphosphate c 75.7 1.5 5.1E-05 51.3 3.7 17 1441-1457 37-53 (293)
302 3co5_A Putative two-component 75.2 2 6.7E-05 44.3 4.0 21 762-782 24-44 (143)
303 2w0m_A SSO2452; RECA, SSPF, un 75.0 10 0.00035 41.8 10.3 20 765-784 23-42 (235)
304 1hqc_A RUVB; extended AAA-ATPa 74.8 3.3 0.00011 48.7 6.5 18 1440-1457 38-55 (324)
305 2qp9_X Vacuolar protein sortin 74.7 1.3 4.3E-05 53.5 2.8 18 766-783 85-102 (355)
306 1iqp_A RFCS; clamp loader, ext 74.3 7.4 0.00025 45.6 9.4 17 1442-1458 48-64 (327)
307 1hqc_A RUVB; extended AAA-ATPa 74.3 1.9 6.5E-05 50.9 4.1 19 765-783 38-56 (324)
308 3n70_A Transport activator; si 74.2 2.1 7.1E-05 44.2 3.9 21 763-783 22-42 (145)
309 3hu3_A Transitional endoplasmi 73.8 2.7 9.3E-05 52.8 5.5 19 765-783 238-256 (489)
310 2ce7_A Cell division protein F 73.8 3.3 0.00011 51.7 6.3 18 766-783 50-67 (476)
311 1sxj_E Activator 1 40 kDa subu 73.3 5.4 0.00018 47.6 7.9 17 767-783 38-54 (354)
312 1e9r_A Conjugal transfer prote 72.7 2.2 7.4E-05 53.0 4.3 49 18-78 47-95 (437)
313 3dm5_A SRP54, signal recogniti 72.3 9.5 0.00033 47.0 9.7 19 1441-1459 101-119 (443)
314 3pvs_A Replication-associated 72.2 3.8 0.00013 50.9 6.3 18 766-783 51-68 (447)
315 3cf2_A TER ATPase, transitiona 72.0 1.4 4.6E-05 58.6 2.2 59 722-783 468-529 (806)
316 3cf2_A TER ATPase, transitiona 71.6 6.2 0.00021 52.3 8.3 17 1441-1457 512-528 (806)
317 1jr3_A DNA polymerase III subu 71.0 26 0.00087 41.8 13.3 17 767-783 40-56 (373)
318 3pvs_A Replication-associated 70.5 6 0.00021 49.1 7.6 18 1441-1458 51-68 (447)
319 1sxj_E Activator 1 40 kDa subu 70.3 5.4 0.00019 47.6 7.0 31 136-167 132-162 (354)
320 3hjh_A Transcription-repair-co 69.4 17 0.00057 45.5 11.2 74 1664-1750 372-445 (483)
321 1w5s_A Origin recognition comp 69.3 5.1 0.00017 48.8 6.6 18 1441-1458 51-70 (412)
322 1sxj_C Activator 1 40 kDa subu 68.9 15 0.00052 43.5 10.4 111 1431-1617 35-147 (340)
323 2eyu_A Twitching motility prot 68.8 2.6 9E-05 48.3 3.5 20 763-782 23-42 (261)
324 1w5s_A Origin recognition comp 68.5 11 0.00038 45.8 9.4 18 766-783 51-70 (412)
325 2r6a_A DNAB helicase, replicat 68.4 11 0.00038 46.8 9.4 24 1439-1462 202-225 (454)
326 2gno_A DNA polymerase III, gam 67.6 21 0.00071 41.8 11.0 18 767-784 20-37 (305)
327 2r6a_A DNAB helicase, replicat 67.0 12 0.00042 46.4 9.4 22 765-786 203-224 (454)
328 2z43_A DNA repair and recombin 66.8 11 0.00037 44.6 8.4 58 765-828 107-165 (324)
329 1cr0_A DNA primase/helicase; R 66.3 29 0.001 40.0 12.0 31 862-893 131-161 (296)
330 3n70_A Transport activator; si 65.8 3.9 0.00013 42.1 3.8 21 1438-1458 22-42 (145)
331 1nlf_A Regulatory protein REPA 65.5 21 0.00072 41.0 10.4 24 763-786 28-51 (279)
332 3jvv_A Twitching mobility prot 65.4 4.3 0.00015 48.7 4.6 17 765-781 123-139 (356)
333 3co5_A Putative two-component 65.3 3.9 0.00013 42.0 3.7 21 1437-1457 24-44 (143)
334 2q6t_A DNAB replication FORK h 65.0 12 0.00042 46.3 8.8 114 1440-1568 200-324 (444)
335 1xp8_A RECA protein, recombina 64.3 9.8 0.00033 45.8 7.4 26 23-49 73-98 (366)
336 2q6t_A DNAB replication FORK h 63.1 16 0.00053 45.3 9.2 22 765-786 200-221 (444)
337 2dhr_A FTSH; AAA+ protein, hex 62.8 12 0.00042 46.9 8.2 17 766-782 65-81 (499)
338 2oap_1 GSPE-2, type II secreti 62.3 6.1 0.00021 49.9 5.3 39 741-781 237-276 (511)
339 2z43_A DNA repair and recombin 61.8 15 0.00053 43.3 8.5 59 1439-1503 106-165 (324)
340 3cmu_A Protein RECA, recombina 61.1 14 0.00048 53.6 9.1 43 765-819 1427-1469(2050)
341 3cmu_A Protein RECA, recombina 61.0 6.1 0.00021 57.2 5.4 41 1439-1491 1426-1466(2050)
342 1e9r_A Conjugal transfer prote 61.0 6.6 0.00023 48.5 5.3 43 1440-1494 53-95 (437)
343 2zr9_A Protein RECA, recombina 58.3 7 0.00024 46.8 4.6 23 765-787 61-83 (349)
344 2w58_A DNAI, primosome compone 58.2 15 0.00051 39.7 7.0 18 1441-1458 55-72 (202)
345 2w58_A DNAI, primosome compone 57.4 10 0.00034 41.2 5.4 18 766-783 55-72 (202)
346 1p9r_A General secretion pathw 56.8 7.6 0.00026 47.7 4.7 17 765-781 167-183 (418)
347 3hr8_A Protein RECA; alpha and 56.8 9.9 0.00034 45.5 5.5 91 23-151 60-152 (356)
348 1qvr_A CLPB protein; coiled co 56.6 18 0.00061 48.8 8.7 19 766-784 192-210 (854)
349 4a1f_A DNAB helicase, replicat 56.5 12 0.00042 44.4 6.3 38 1439-1488 45-82 (338)
350 1cr0_A DNA primase/helicase; R 56.2 17 0.00057 42.1 7.4 23 20-42 31-53 (296)
351 2gno_A DNA polymerase III, gam 55.7 44 0.0015 39.0 10.9 17 1442-1458 20-36 (305)
352 2dr3_A UPF0273 protein PH0284; 55.4 13 0.00044 41.5 6.0 52 764-828 22-73 (247)
353 1vma_A Cell division protein F 55.4 35 0.0012 39.9 9.9 20 765-784 104-123 (306)
354 3b85_A Phosphate starvation-in 55.3 10 0.00034 41.8 4.9 35 748-782 5-39 (208)
355 3io5_A Recombination and repai 55.3 14 0.00048 43.3 6.3 43 767-819 30-72 (333)
356 1ypw_A Transitional endoplasmi 55.3 8 0.00027 51.8 4.9 19 1439-1457 510-528 (806)
357 3hws_A ATP-dependent CLP prote 55.1 12 0.00042 44.8 6.1 21 764-784 50-70 (363)
358 2i1q_A DNA repair and recombin 54.9 11 0.00039 44.3 5.7 22 765-786 98-119 (322)
359 3a8t_A Adenylate isopentenyltr 54.4 5.8 0.0002 47.0 2.9 18 766-783 41-58 (339)
360 1kgd_A CASK, peripheral plasma 54.0 6.2 0.00021 42.2 2.9 19 764-782 4-22 (180)
361 3nwn_A Kinesin-like protein KI 53.9 8.1 0.00028 46.3 4.1 25 758-782 96-122 (359)
362 2i1q_A DNA repair and recombin 53.9 21 0.0007 42.0 7.7 19 22-40 96-114 (322)
363 2gza_A Type IV secretion syste 53.9 7.4 0.00025 46.8 3.9 20 762-781 172-191 (361)
364 4ag6_A VIRB4 ATPase, type IV s 53.5 10 0.00035 46.0 5.2 42 764-817 34-75 (392)
365 3foz_A TRNA delta(2)-isopenten 52.9 5.5 0.00019 46.5 2.4 16 768-783 13-28 (316)
366 3hr8_A Protein RECA; alpha and 52.9 10 0.00034 45.5 4.7 41 765-817 61-101 (356)
367 3exa_A TRNA delta(2)-isopenten 52.7 5.6 0.00019 46.6 2.4 17 767-783 5-21 (322)
368 3e70_C DPA, signal recognition 52.4 46 0.0016 39.3 10.3 18 765-782 129-146 (328)
369 3io5_A Recombination and repai 52.4 16 0.00054 42.9 6.0 90 1442-1567 30-124 (333)
370 1ls1_A Signal recognition part 52.2 34 0.0011 39.7 9.0 20 765-784 98-117 (295)
371 3cf0_A Transitional endoplasmi 52.2 4.1 0.00014 47.7 1.2 57 726-783 10-67 (301)
372 2bjv_A PSP operon transcriptio 52.2 8.6 0.0003 43.8 3.9 19 764-782 28-46 (265)
373 2ffh_A Protein (FFH); SRP54, s 51.7 38 0.0013 41.4 9.7 22 765-786 98-119 (425)
374 1v8k_A Kinesin-like protein KI 51.6 9.1 0.00031 46.6 4.1 25 758-782 146-172 (410)
375 3dc4_A Kinesin-like protein NO 51.4 8.4 0.00029 45.8 3.7 25 758-782 86-112 (344)
376 1bg2_A Kinesin; motor protein, 51.3 9.3 0.00032 45.1 4.0 25 758-782 69-95 (325)
377 3trf_A Shikimate kinase, SK; a 51.2 6.3 0.00022 42.0 2.4 20 765-784 5-24 (185)
378 3nbx_X ATPase RAVA; AAA+ ATPas 51.0 14 0.00049 46.3 5.9 30 753-782 29-58 (500)
379 1qvr_A CLPB protein; coiled co 51.0 27 0.00092 47.1 9.1 19 1441-1459 192-210 (854)
380 1t5c_A CENP-E protein, centrom 50.9 8.8 0.0003 45.8 3.8 25 758-782 69-95 (349)
381 4etp_A Kinesin-like protein KA 50.7 9.6 0.00033 46.4 4.1 25 758-782 132-158 (403)
382 2yhs_A FTSY, cell division pro 50.6 32 0.0011 42.8 8.8 19 765-783 293-311 (503)
383 3gbj_A KIF13B protein; kinesin 50.6 8.9 0.00031 45.8 3.8 25 758-782 84-110 (354)
384 4a1f_A DNAB helicase, replicat 50.4 19 0.00066 42.7 6.6 22 765-786 46-67 (338)
385 3b6u_A Kinesin-like protein KI 50.3 10 0.00034 45.7 4.1 24 758-781 93-118 (372)
386 4a74_A DNA repair and recombin 50.3 39 0.0013 36.9 8.9 115 21-152 22-139 (231)
387 3u4q_B ATP-dependent helicase/ 50.0 22 0.00075 49.8 8.2 89 768-890 4-92 (1166)
388 2nr8_A Kinesin-like protein KI 49.7 10 0.00035 45.3 4.1 24 758-781 95-120 (358)
389 2zfi_A Kinesin-like protein KI 49.6 9.2 0.00031 46.0 3.7 25 758-782 81-107 (366)
390 1x88_A Kinesin-like protein KI 49.6 8.9 0.0003 46.0 3.5 24 758-781 80-105 (359)
391 2ehv_A Hypothetical protein PH 49.5 9.9 0.00034 42.5 3.8 116 21-166 27-168 (251)
392 4akg_A Glutathione S-transfera 49.4 17 0.00058 54.6 7.0 49 1410-1459 890-942 (2695)
393 2vvg_A Kinesin-2; motor protei 49.3 10 0.00035 45.2 4.0 25 758-782 81-107 (350)
394 2h58_A Kinesin-like protein KI 49.3 10 0.00035 44.8 4.0 26 757-782 71-98 (330)
395 2eyu_A Twitching motility prot 49.2 7.6 0.00026 44.4 2.8 35 2-41 8-42 (261)
396 2y65_A Kinesin, kinesin heavy 49.2 10 0.00035 45.4 4.0 25 758-782 76-102 (365)
397 1v5w_A DMC1, meiotic recombina 49.1 21 0.0007 42.5 6.7 58 765-828 122-180 (343)
398 2qmh_A HPR kinase/phosphorylas 49.1 6.4 0.00022 42.9 2.0 22 21-42 31-53 (205)
399 2pt7_A CAG-ALFA; ATPase, prote 49.0 8.6 0.00029 45.6 3.3 19 763-781 169-187 (330)
400 4akg_A Glutathione S-transfera 49.0 17 0.00057 54.7 6.9 49 735-784 890-942 (2695)
401 3tau_A Guanylate kinase, GMP k 49.0 8.7 0.0003 42.1 3.2 20 764-783 7-26 (208)
402 3vaa_A Shikimate kinase, SK; s 48.8 8.9 0.0003 41.6 3.2 21 764-784 24-44 (199)
403 3cob_A Kinesin heavy chain-lik 48.5 8.7 0.0003 46.2 3.2 25 758-782 71-97 (369)
404 3t0q_A AGR253WP; kinesin, alph 48.4 9 0.00031 45.7 3.3 25 758-782 77-103 (349)
405 4a14_A Kinesin, kinesin-like p 48.4 11 0.00037 45.0 4.0 25 758-782 75-101 (344)
406 3bh0_A DNAB-like replicative h 48.4 23 0.0008 41.5 6.9 38 1439-1488 67-104 (315)
407 2l8b_A Protein TRAI, DNA helic 48.4 17 0.00058 38.9 5.0 60 751-821 35-96 (189)
408 2ze6_A Isopentenyl transferase 48.3 6.9 0.00024 44.5 2.2 16 768-783 4-19 (253)
409 3bh0_A DNAB-like replicative h 48.2 28 0.00096 40.8 7.6 22 765-786 68-89 (315)
410 1goj_A Kinesin, kinesin heavy 48.0 11 0.00036 45.2 3.8 23 759-781 73-97 (355)
411 1u0j_A DNA replication protein 47.7 26 0.0009 40.0 6.9 43 738-783 74-122 (267)
412 2dr3_A UPF0273 protein PH0284; 47.7 16 0.00054 40.7 5.2 52 1439-1503 22-73 (247)
413 3lre_A Kinesin-like protein KI 47.6 11 0.00037 45.2 3.8 25 758-782 97-123 (355)
414 2wbe_C Bipolar kinesin KRP-130 47.6 9.6 0.00033 45.9 3.4 24 758-781 92-117 (373)
415 1lv7_A FTSH; alpha/beta domain 47.5 19 0.00065 40.6 5.8 54 727-783 8-63 (257)
416 3h4m_A Proteasome-activating n 47.5 7.3 0.00025 44.8 2.3 54 1401-1457 12-68 (285)
417 2r44_A Uncharacterized protein 47.3 9.3 0.00032 45.1 3.3 22 761-782 42-63 (331)
418 1f9v_A Kinesin-like protein KA 47.1 9.3 0.00032 45.6 3.2 25 758-782 76-102 (347)
419 1lvg_A Guanylate kinase, GMP k 47.1 9.9 0.00034 41.3 3.2 20 764-783 3-22 (198)
420 3u06_A Protein claret segregat 47.0 11 0.00039 45.8 4.0 26 757-782 129-156 (412)
421 2p65_A Hypothetical protein PF 46.9 6.2 0.00021 41.7 1.5 19 765-783 43-61 (187)
422 1qhx_A CPT, protein (chloramph 46.8 7.8 0.00027 41.0 2.2 20 765-784 3-22 (178)
423 3iij_A Coilin-interacting nucl 46.7 6.1 0.00021 42.1 1.4 21 764-784 10-30 (180)
424 2heh_A KIF2C protein; kinesin, 46.6 11 0.00038 45.4 3.7 25 758-782 126-152 (387)
425 4ag6_A VIRB4 ATPase, type IV s 46.5 15 0.00052 44.5 5.1 42 1439-1492 34-75 (392)
426 3lw7_A Adenylate kinase relate 46.5 7.8 0.00027 40.5 2.2 17 767-783 3-19 (179)
427 1ofh_A ATP-dependent HSL prote 46.3 26 0.00088 40.5 6.9 19 765-783 50-68 (310)
428 2owm_A Nckin3-434, related to 45.6 11 0.00039 46.3 3.6 25 758-782 128-154 (443)
429 3ney_A 55 kDa erythrocyte memb 45.3 10 0.00035 41.3 2.9 19 764-782 18-36 (197)
430 2qmh_A HPR kinase/phosphorylas 45.3 9.2 0.00031 41.7 2.5 19 765-783 34-52 (205)
431 2oap_1 GSPE-2, type II secreti 45.0 21 0.00071 45.0 6.0 40 1416-1457 237-277 (511)
432 3bfn_A Kinesin-like protein KI 44.9 9.2 0.00031 46.2 2.6 24 759-782 91-116 (388)
433 3crm_A TRNA delta(2)-isopenten 44.8 10 0.00034 44.8 2.9 17 767-783 7-23 (323)
434 1ex7_A Guanylate kinase; subst 44.8 9.9 0.00034 41.1 2.6 16 766-781 2-17 (186)
435 3jvv_A Twitching mobility prot 44.7 16 0.00055 43.7 4.8 19 1439-1457 122-140 (356)
436 1v5w_A DMC1, meiotic recombina 44.4 31 0.0011 40.9 7.3 58 1440-1503 122-180 (343)
437 1ojl_A Transcriptional regulat 44.1 12 0.00041 43.8 3.5 20 764-783 24-43 (304)
438 2j37_W Signal recognition part 43.7 45 0.0015 41.8 8.8 103 1443-1561 104-222 (504)
439 2xxa_A Signal recognition part 43.6 33 0.0011 42.2 7.4 21 766-786 101-121 (433)
440 2xxa_A Signal recognition part 43.5 51 0.0018 40.5 9.1 21 1441-1461 101-121 (433)
441 3cf0_A Transitional endoplasmi 43.5 7.1 0.00024 45.6 1.4 55 1401-1458 10-67 (301)
442 2r44_A Uncharacterized protein 43.4 13 0.00045 43.8 3.8 23 1435-1457 41-63 (331)
443 1u0j_A DNA replication protein 43.2 33 0.0011 39.1 6.8 43 1413-1458 74-122 (267)
444 2qor_A Guanylate kinase; phosp 43.1 11 0.00037 41.1 2.7 21 763-783 10-30 (204)
445 3hws_A ATP-dependent CLP prote 43.0 24 0.00083 42.2 6.0 20 1439-1458 50-69 (363)
446 2j41_A Guanylate kinase; GMP, 42.8 12 0.0004 40.6 2.9 21 763-783 4-24 (207)
447 2rep_A Kinesin-like protein KI 42.7 12 0.0004 45.2 3.1 25 758-782 107-133 (376)
448 1kag_A SKI, shikimate kinase I 42.6 11 0.00038 39.6 2.6 19 765-783 4-22 (173)
449 3d3q_A TRNA delta(2)-isopenten 42.6 11 0.00039 44.6 2.9 17 767-783 9-25 (340)
450 1zp6_A Hypothetical protein AT 42.4 9.3 0.00032 40.9 2.0 19 764-782 8-26 (191)
451 1ixz_A ATP-dependent metallopr 42.1 6.9 0.00024 44.3 1.0 53 725-782 10-66 (254)
452 2x8a_A Nuclear valosin-contain 42.1 4.8 0.00016 46.5 -0.4 54 726-782 5-61 (274)
453 3eph_A TRNA isopentenyltransfe 41.9 10 0.00035 45.9 2.5 16 768-783 5-20 (409)
454 1kht_A Adenylate kinase; phosp 41.7 11 0.00037 40.2 2.4 19 765-783 3-21 (192)
455 1w36_B RECB, exodeoxyribonucle 41.7 25 0.00085 49.3 6.6 62 767-828 18-79 (1180)
456 2ewv_A Twitching motility prot 41.7 11 0.00036 45.6 2.6 19 764-782 135-153 (372)
457 3tr0_A Guanylate kinase, GMP k 41.7 13 0.00045 40.1 3.2 19 764-782 6-24 (205)
458 3a00_A Guanylate kinase, GMP k 41.5 14 0.00048 39.6 3.2 17 766-782 2-18 (186)
459 1j8m_F SRP54, signal recogniti 41.4 63 0.0022 37.4 9.1 20 765-784 98-117 (297)
460 2bjv_A PSP operon transcriptio 41.4 15 0.00052 41.7 3.7 19 1439-1457 28-46 (265)
461 2ffh_A Protein (FFH); SRP54, s 41.2 65 0.0022 39.4 9.5 20 1440-1459 98-117 (425)
462 1y63_A LMAJ004144AAA protein; 41.0 11 0.00039 40.2 2.4 19 765-783 10-28 (184)
463 3nbx_X ATPase RAVA; AAA+ ATPas 40.2 14 0.00049 46.3 3.4 29 1429-1457 30-58 (500)
464 1pzn_A RAD51, DNA repair and r 39.9 64 0.0022 38.4 9.0 19 137-155 230-248 (349)
465 2p65_A Hypothetical protein PF 39.6 10 0.00036 39.9 1.8 19 1440-1458 43-61 (187)
466 1z6g_A Guanylate kinase; struc 39.6 16 0.00055 40.3 3.4 19 764-782 22-40 (218)
467 3vkg_A Dynein heavy chain, cyt 39.6 19 0.00066 54.5 5.1 49 735-784 873-925 (3245)
468 3a8t_A Adenylate isopentenyltr 39.2 14 0.00047 43.8 2.9 19 1441-1459 41-59 (339)
469 1ly1_A Polynucleotide kinase; 39.1 12 0.00041 39.4 2.2 17 767-783 4-20 (181)
470 3uk6_A RUVB-like 2; hexameric 38.9 12 0.00042 44.7 2.5 19 765-783 70-88 (368)
471 1lv7_A FTSH; alpha/beta domain 38.7 30 0.001 38.9 5.6 18 1440-1457 45-62 (257)
472 3kb2_A SPBC2 prophage-derived 38.6 12 0.00042 39.0 2.2 18 767-784 3-20 (173)
473 3vkg_A Dynein heavy chain, cyt 38.5 21 0.00073 54.1 5.3 49 1410-1459 873-925 (3245)
474 1ofh_A ATP-dependent HSL prote 38.4 39 0.0014 38.9 6.8 20 1439-1458 49-68 (310)
475 2zts_A Putative uncharacterize 38.3 24 0.00081 39.3 4.7 22 765-786 30-51 (251)
476 3eie_A Vacuolar protein sortin 38.2 29 0.001 40.7 5.6 51 1401-1457 13-68 (322)
477 1f2t_A RAD50 ABC-ATPase; DNA d 37.7 13 0.00046 38.4 2.2 14 768-781 26-39 (149)
478 4eun_A Thermoresistant glucoki 37.7 14 0.00047 40.1 2.5 20 764-783 28-47 (200)
479 3foz_A TRNA delta(2)-isopenten 37.5 13 0.00045 43.4 2.3 17 1443-1459 13-29 (316)
480 2gza_A Type IV secretion syste 37.5 18 0.00061 43.4 3.6 21 1437-1457 172-192 (361)
481 3exa_A TRNA delta(2)-isopenten 37.2 15 0.00052 42.9 2.8 17 1442-1458 5-21 (322)
482 1kgd_A CASK, peripheral plasma 36.8 17 0.00057 38.8 2.9 19 1439-1457 4-22 (180)
483 1tue_A Replication protein E1; 36.7 36 0.0012 37.2 5.5 67 1374-1457 5-75 (212)
484 1ry6_A Internal kinesin; kines 36.6 20 0.00067 42.9 3.7 19 764-782 82-102 (360)
485 3b85_A Phosphate starvation-in 36.5 25 0.00087 38.5 4.4 32 1426-1457 8-39 (208)
486 1p9r_A General secretion pathw 36.5 25 0.00085 43.1 4.7 28 1430-1457 155-184 (418)
487 1znw_A Guanylate kinase, GMP k 36.2 18 0.00063 39.4 3.2 22 761-782 16-37 (207)
488 4gp7_A Metallophosphoesterase; 36.2 13 0.00044 39.3 1.9 19 765-783 9-27 (171)
489 4fcw_A Chaperone protein CLPB; 36.2 16 0.00055 42.4 2.9 17 767-783 49-65 (311)
490 3nwn_A Kinesin-like protein KI 36.0 20 0.00069 42.9 3.7 25 1433-1457 96-122 (359)
491 3nwj_A ATSK2; P loop, shikimat 36.0 21 0.00071 40.5 3.6 23 762-784 45-67 (250)
492 1knq_A Gluconate kinase; ALFA/ 35.8 13 0.00045 39.1 1.9 19 765-783 8-26 (175)
493 1m7g_A Adenylylsulfate kinase; 35.8 19 0.00066 39.3 3.3 32 752-784 13-44 (211)
494 3cm0_A Adenylate kinase; ATP-b 35.5 12 0.0004 39.9 1.4 20 765-784 4-23 (186)
495 1iy2_A ATP-dependent metallopr 35.5 10 0.00035 43.6 1.0 52 726-782 35-90 (278)
496 1njg_A DNA polymerase III subu 35.5 23 0.0008 38.7 4.0 17 767-783 47-63 (250)
497 3trf_A Shikimate kinase, SK; a 35.3 15 0.00053 38.9 2.3 20 1440-1459 5-24 (185)
498 1um8_A ATP-dependent CLP prote 35.2 16 0.00054 44.1 2.6 19 765-783 72-90 (376)
499 3cmw_A Protein RECA, recombina 35.2 32 0.0011 49.3 6.0 89 765-892 1431-1522(1706)
500 1f9v_A Kinesin-like protein KA 35.1 15 0.00052 43.7 2.4 26 15-40 74-101 (347)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.9e-95 Score=1024.61 Aligned_cols=1016 Identities=18% Similarity=0.202 Sum_probs=717.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
||++...++ .||+.++++|++++|.++. ++|+++|||||||||++|.+||+..|.+..... ......+.++||++|
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~-~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD-GTINVDDFKIIYIAP 142 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT-SSCCTTSCEEEEECS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc-ccccCCCCEEEEECC
Confidence 666655554 3899999999999999985 789999999999999999999999886543221 112346789999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc---ccCCceeEEEecchh
Q psy6409 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL---VLNQCTYIVLDEADR 890 (1832)
Q Consensus 814 treLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~---~l~~~~~lViDEaH~ 890 (1832)
+++||.|+++.|.+.+..+|++|..++||.+...+. ..+++|+|||||+| +.+.++.. .++.+++|||||+|.
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkl-d~llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKW-DIITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHH-HHHTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHH-HHHHcCCccchhhcCcCEEEEecchh
Confidence 999999999999999899999999999998765432 34799999999998 66655432 478999999999996
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC--cEEEEccc
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP--ATVYIGSV 968 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p--~~v~~~~~ 968 (1832)
+.| .+++.++.++.++ +..........|+|++|||+|+ .+.++...-.++ ..+.++..
T Consensus 219 l~d-~RG~~lE~~l~rl------------------~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~ 278 (1724)
T 4f92_B 219 LHD-DRGPVLEALVARA------------------IRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS 278 (1724)
T ss_dssp GGS-TTHHHHHHHHHHH------------------HHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG
T ss_pred cCC-ccHHHHHHHHHHH------------------HHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC
Confidence 654 7999999888765 2233334466899999999997 555665443332 12333333
Q ss_pred CCCCcceEEEEEEcchhh---HHH----HHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc-----------------
Q psy6409 969 GKPTERIEQIVYILSEQD---KRK----KLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL----------------- 1023 (1832)
Q Consensus 969 ~~~~~~i~q~~~~~~~~~---k~~----~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~----------------- 1023 (1832)
..+. .+.+.+..+.... ... .+...+.. ...+++||||++++.|+.+|..|.+.
T Consensus 279 ~RPv-pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~ 357 (1724)
T 4f92_B 279 FRPV-PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAS 357 (1724)
T ss_dssp GCSS-CEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTC
T ss_pred CccC-ccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhH
Confidence 3333 3555444433221 111 12222222 35678999999999999999888532
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cCC--
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YDM-- 1077 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d~-- 1077 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++++||. |+.
T Consensus 358 ~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~ 437 (1724)
T 4f92_B 358 TEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEK 437 (1724)
T ss_dssp SSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTT
T ss_pred HHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcC
Confidence 346899999999999999999999999999999999999999999999995 543
Q ss_pred ----CCCHhHHHHHhcccccCCC--CcEEEEEecCCCc---------------hHHHHHHHHHhcCCccccccccccccc
Q psy6409 1078 ----AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDS---------------HLFYDLKQMMISSPVTGRAGKEGLAVS 1136 (1832)
Q Consensus 1078 ----p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~---------------~~~~~l~~~l~~~~~~~~~~~~~~~v~ 1136 (1832)
|.++.+|+||+|||||+|. .|.+++++++++. .+...+.+++++++++|++.+..+++.
T Consensus 438 ~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~ 517 (1724)
T 4f92_B 438 GRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVN 517 (1724)
T ss_dssp TEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHH
T ss_pred CCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHH
Confidence 5689999999999999985 4999999998753 444556789999999999999999999
Q ss_pred ccccCCchhHHHHHHhhhcCCCC--CCchhhcCCCcc-cCCC-CcccccCCccccCCChhhhccccccccccccccCccc
Q psy6409 1137 FCTKDDSHLFYDLKQMMISSPVS--TCPPELLNHPDA-QHKP-GTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKK 1212 (1832)
Q Consensus 1137 ~~~~~~~~~~~~l~~~l~~~~~~--~~~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1212 (1832)
|+..+...+.......+..-... ..++.+...... +... ......+ ..+.....+....+.+|+..
T Consensus 518 ~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~----------li~~d~~~~~~~~T~lGr~~ 587 (1724)
T 4f92_B 518 WLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN----------LVKYDKKTGNFQVTELGRIA 587 (1724)
T ss_dssp HHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTT----------SEEECTTTCBEEECHHHHHH
T ss_pred HHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCC----------CeeeecCCCccccchHHHHH
Confidence 99765432221111111100000 000000000000 0000 0000000 01111222344567789999
Q ss_pred ccccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHH----------------------hcc
Q psy6409 1213 SPQCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKER----------------------YLG 1268 (1832)
Q Consensus 1213 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~----------------------~~~ 1268 (1832)
+++|..+.+ ..+.-.....++..++|.+++.+.+|..+.+|.+| .+|+.|.+. |++
T Consensus 588 s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~i~ 667 (1724)
T 4f92_B 588 SHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFIS 667 (1724)
T ss_dssp HHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHHHSSSCCCSCCSSHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHhcCCCCcCCCCCChHHHHHHHHHHHHc
Confidence 999998888 33334456677888999999999999999999887 788776544 332
Q ss_pred hhh----------------hhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccchhhhcc---chh
Q psy6409 1269 LVK----------------KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKR---DQS 1329 (1832)
Q Consensus 1269 ~~~----------------~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---~~~ 1329 (1832)
... ..|.++++++.....+|...+..++.++++++.+.|........+++++...-.+ ...
T Consensus 668 ~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~ 747 (1724)
T 4f92_B 668 QLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF 747 (1724)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSC
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCC
Confidence 111 2455566666666778999999999999999999998866667777776442211 001
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHhhhHHh----------------------hhcccCCCCCh----------------
Q psy6409 1330 KFYGEMLEKRRTEAEKEQEKVRLKKVKKREE----------------------KQKWDDRHWTE---------------- 1371 (1832)
Q Consensus 1330 ~f~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----------------------~~~~~~~~~~~---------------- 1371 (1832)
.+.........+..+.-.......+..+... .....+..|.+
T Consensus 748 ~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~ 827 (1724)
T 4f92_B 748 PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDV 827 (1724)
T ss_dssp CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECT
T ss_pred CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEEEEeeccccchhhcCCceeEEEEEEec
Confidence 1110000000000000000000111111100 00011222221
Q ss_pred ------------------------------------hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccC-------
Q psy6409 1372 ------------------------------------KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEA------- 1408 (1832)
Q Consensus 1372 ------------------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~------- 1408 (1832)
..+-...++.|........+.+.+..+|+....++++
T Consensus 828 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp 907 (1724)
T 4f92_B 828 DSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLP 907 (1724)
T ss_dssp TSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCB
T ss_pred CCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCC
Confidence 1111222345666556666667777777655555442
Q ss_pred --CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1409 --SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1409 --~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
.|.+..++.+...+|..|+|+|.++|+.++. +.|++++||||||||++|.+||+..+.+. .+.++||
T Consensus 908 ~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavy 977 (1724)
T 4f92_B 908 VSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVY 977 (1724)
T ss_dssp GGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEE
T ss_pred cccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEE
Confidence 2445677777788999999999999999986 47899999999999999999999888652 3567999
Q ss_pred EcCcHHHHHHHHHHHHH-hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccc--cccCCceeEEEcc
Q psy6409 1486 MAPTRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDE 1562 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~-~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDE 1562 (1832)
|+|+++||.|++..|.+ |+..+|++|+.++|+...+... ..+++|+|||||+|..+++++. ..++++++||+||
T Consensus 978 i~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE 1054 (1724)
T 4f92_B 978 ITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 1054 (1724)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECC
T ss_pred EcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeec
Confidence 99999999999999975 6677899999999998765442 3468999999999988887643 3578999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc-CCCcEEEEc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-RRPATVYIG 1641 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-~~p~~v~i~ 1641 (1832)
+|+|.+ .+++.++.++..+.. .........|+|++|||+++.. +++.+.. .....+.+.
T Consensus 1055 ~H~l~d-~rg~~le~il~rl~~------------------i~~~~~~~~riI~lSATl~N~~-dla~WL~~~~~~~~~~~ 1114 (1724)
T 4f92_B 1055 VHLIGG-ENGPVLEVICSRMRY------------------ISSQIERPIRIVALSSSLSNAK-DVAHWLGCSATSTFNFH 1114 (1724)
T ss_dssp GGGGGS-TTHHHHHHHHHHHHH------------------HHHTTSSCCEEEEEESCBTTHH-HHHHHHTCCSTTEEECC
T ss_pred hhhcCC-CCCccHHHHHHHHHH------------------HHhhcCCCceEEEEeCCCCCHH-HHHHHhCCCCCCeEEeC
Confidence 997765 578888888876531 1122335689999999999864 4444333 233444555
Q ss_pred ccCCCCcceEEEEEEcchhh--------HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH----------------
Q psy6409 1642 SVGKPTERIEQIVYILSEQD--------KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK---------------- 1697 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~--------k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~---------------- 1697 (1832)
...++.. +...+....... .......+......+++||||+|++.|+.++..|..
T Consensus 1115 ~~~RPvp-L~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~ 1193 (1724)
T 4f92_B 1115 PNVRPVP-LELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1193 (1724)
T ss_dssp GGGCSSC-EEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCH
T ss_pred CCCCCCC-eEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccH
Confidence 5555443 333333222111 111222233445778999999999999998877743
Q ss_pred ------------------cCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----e-----
Q psy6409 1698 ------------------LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----Y----- 1750 (1832)
Q Consensus 1698 ------------------~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~----- 1750 (1832)
+..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. |
T Consensus 1194 ~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~ 1273 (1724)
T 4f92_B 1194 KDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIH 1273 (1724)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTT
T ss_pred HHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCccc
Confidence 1357999999999999999999999999999999999999999999999984 3
Q ss_pred -CCCCCHHHHHHHhcccccCCC--ccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCcCCCCcccccc
Q psy6409 1751 -DMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPK 1823 (1832)
Q Consensus 1751 -d~P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~~~~gti~~~~ 1823 (1832)
..|.++.+|+||+|||||+|. .|.|++|+++.+..+|..+.....+.+ |++...|.+|.+++|+.|+|.+++
T Consensus 1274 ~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pve-S~L~~~l~~~l~~eI~~~~i~~~~ 1348 (1724)
T 4f92_B 1274 AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVE-SHLDHCMHDHFNAEIVTKTIENKQ 1348 (1724)
T ss_dssp EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCC-CCGGGSCHHHHHHHHHTTSCCBHH
T ss_pred ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCcee-eecccchHHHHHHHHHhcccCCHH
Confidence 346789999999999999986 699999999999999999988888886 899999999999999999998654
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.2e-59 Score=661.84 Aligned_cols=482 Identities=17% Similarity=0.163 Sum_probs=337.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEcc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaP 813 (1832)
|.....+++...+|..++|+|.++|+.++. +.|++++||||||||++|.+||+..+.+ ..+.++||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~----------~~~~kavyi~P 980 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ----------SSEGRCVYITP 980 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----------CTTCCEEEECS
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----------CCCCEEEEEcC
Confidence 445677888888999999999999999986 5789999999999999999999988753 24668999999
Q ss_pred chhHHHHHHHHHHH-hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc--ccccCCceeEEEecchh
Q psy6409 814 TRELAQQIEEETNK-FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 814 treLa~Qi~~~~~~-~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~--~~~l~~~~~lViDEaH~ 890 (1832)
+++||.|++..+.+ ++..+|++|+.++|+...... ...+++|+|||||+|..++.+. ...++++++||+||+|+
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 99999999999875 667789999999998764433 2346899999999995555432 23578999999999997
Q ss_pred hhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc-EEEEcccC
Q psy6409 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA-TVYIGSVG 969 (1832)
Q Consensus 891 l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~-~v~~~~~~ 969 (1832)
|.+ .+++.++.++.++. ..........|+|++|||+|+ ...++......+. .+.+....
T Consensus 1058 l~d-~rg~~le~il~rl~------------------~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~ 1117 (1724)
T 4f92_B 1058 IGG-ENGPVLEVICSRMR------------------YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNV 1117 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHH------------------HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGG
T ss_pred cCC-CCCccHHHHHHHHH------------------HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCC
Confidence 766 68999888887652 111223356899999999997 5567665544433 33333333
Q ss_pred CCCcceEEEEEEcchhhH---H----HHHHHHH-HcCCCCCEEEEEcccchHHHHHHHHHHc------------------
Q psy6409 970 KPTERIEQIVYILSEQDK---R----KKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKL------------------ 1023 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~~~~k---~----~~L~~~l-~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------------ 1023 (1832)
.+ ..++..+........ . ..+...+ .....+++||||++++.|+.++..|...
T Consensus 1118 RP-vpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l 1196 (1724)
T 4f92_B 1118 RP-VPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDL 1196 (1724)
T ss_dssp CS-SCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHH
T ss_pred CC-CCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHH
Confidence 33 334444433322111 1 1122222 3356789999999999999988776321
Q ss_pred ----------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC------C
Q psy6409 1024 ----------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD------M 1077 (1832)
Q Consensus 1024 ----------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d------~ 1077 (1832)
..++++|||||++.+|..+++.|++|.++|||||+++++|||+|++.+||. || .
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 346999999999999999999999999999999999999999999999993 32 3
Q ss_pred CCCHhHHHHHhcccccCCC--CcEEEEEecCCCchHHH---------------HHHHHHhcCCccccccccccccccccc
Q psy6409 1078 AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFY---------------DLKQMMISSPVTGRAGKEGLAVSFCTK 1140 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~~~~~---------------~l~~~l~~~~~~~~~~~~~~~v~~~~~ 1140 (1832)
|.++.+|+||+|||||+|. .|.|++++.+.+..++. .+.+++++++..+++.+..++++|+..
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 6799999999999999997 59999999887554443 356788899999999999999999876
Q ss_pred CCchhHHHHHHhhhcCCCCCCch-----hhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccc
Q psy6409 1141 DDSHLFYDLKQMMISSPVSTCPP-----ELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQ 1215 (1832)
Q Consensus 1141 ~~~~~~~~l~~~l~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1832)
+..... +..-..-........ .+..+.... .......++... ..........+|+..+.+
T Consensus 1357 Tfl~~r--~~~nP~~y~l~~~~~~~~~~~l~~lv~~~--l~~L~~~~~I~~-----------~~~~~l~~T~lG~i~s~~ 1421 (1724)
T 4f92_B 1357 TFLYRR--MTQNPNYYNLQGISHRHLSDHLSELVEQT--LSDLEQSKCISI-----------EDEMDVAPLNLGMIAAYY 1421 (1724)
T ss_dssp SSHHHH--HHHSGGGTTCSCCSHHHHHHHHHHHHHHH--HHHHHHTTSEEE-----------ETTTEEEECHHHHHHHHT
T ss_pred hHHHHH--HhcCcccccccccchhhHHHHHHHHHHHH--HHHHHHCCCEEE-----------cCCCCEeecHHHHHHHHH
Confidence 543211 111000000000000 000000000 000000000000 000012235578888999
Q ss_pred cccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHH
Q psy6409 1216 CEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKER 1265 (1832)
Q Consensus 1216 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~ 1265 (1832)
|..+.+ ..+...+....+..++|+.++.+.+|+.+.+|-.| ..+..|.+.
T Consensus 1422 yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~ 1473 (1724)
T 4f92_B 1422 YINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK 1473 (1724)
T ss_dssp TCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhh
Confidence 988777 33333445566778899999999999999988766 455556554
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-58 Score=581.48 Aligned_cols=380 Identities=41% Similarity=0.689 Sum_probs=348.3
Q ss_pred hccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhh
Q psy6409 713 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 792 (1832)
Q Consensus 713 ~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~ 792 (1832)
+..+.+.|.++|.|+.+|++++|++.++++|.+.||..|||+|.++||.+++|+|+|++||||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred chhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc
Q psy6409 793 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872 (1832)
Q Consensus 793 ~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~ 872 (1832)
.+.. ....++++|||+|||+||.|+++.+.+++...++++..++||.....+...+..+++|+|+|||+|.+++.+
T Consensus 121 ~~~~----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 121 DPHE----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SCCC----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccc----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh
Confidence 3221 123578999999999999999999999999889999999999999888888888999999999999999999
Q ss_pred cccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 873 ~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
+.+.+.++++|||||||+|+++||.+.+..|+..+.. ...+|+++||||+|+.+..+
T Consensus 197 ~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~-----------------------~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 197 TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM-----------------------RPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS-----------------------CSSCEEEEEESCCCHHHHHH
T ss_pred CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC-----------------------CCCceEEEEeccCCHHHHHH
Confidence 8888999999999999999999999999999987631 23479999999999999999
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcC
Q psy6409 953 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032 (1832)
Q Consensus 953 ~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg 1032 (1832)
+..++.+|..+.++........+.+.+..+....|...|.+++..... ++||||+++..|+.+++.|...|+.+..+||
T Consensus 254 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 254 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp HHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred HHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999888877788899999999999999999999987654 4999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchH
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1111 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~ 1111 (1832)
++++.+|..+++.|++|+.+|||||+++++|||+|+|++|||||+|.++.+|+||+|||||+|+.|.|++|++++ +..+
T Consensus 333 ~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 333 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999954 6566
Q ss_pred HHHHHHHHh
Q psy6409 1112 FYDLKQMMI 1120 (1832)
Q Consensus 1112 ~~~l~~~l~ 1120 (1832)
+..|.+.+.
T Consensus 413 ~~~l~~~l~ 421 (434)
T 2db3_A 413 AADLVKILE 421 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-57 Score=571.95 Aligned_cols=392 Identities=41% Similarity=0.675 Sum_probs=361.4
Q ss_pred cccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh
Q psy6409 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 1467 (1832)
Q Consensus 1388 ~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~ 1467 (1832)
+..+.+.|...|.|+.+|++++|++.++++|..+||..|+|+|.++||.++.|+|++++||||||||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc
Q psy6409 1468 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 1547 (1832)
Q Consensus 1468 ~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~ 1547 (1832)
.+.. ....++++|||+||++||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|.+++.+
T Consensus 121 ~~~~----~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 196 (434)
T 2db3_A 121 DPHE----LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR 196 (434)
T ss_dssp SCCC----CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccc----cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh
Confidence 4321 123578999999999999999999999998889999999999998888888888999999999999999999
Q ss_pred cccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHH
Q psy6409 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627 (1832)
Q Consensus 1548 ~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~ 1627 (1832)
+.+.+.++++|||||||+|++++|.+.+..|+..+.. ...+|+++||||+|..+..+
T Consensus 197 ~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~-----------------------~~~~q~l~~SAT~~~~~~~~ 253 (434)
T 2db3_A 197 TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM-----------------------RPEHQTLMFSATFPEEIQRM 253 (434)
T ss_dssp TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS-----------------------CSSCEEEEEESCCCHHHHHH
T ss_pred CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC-----------------------CCCceEEEEeccCCHHHHHH
Confidence 8888999999999999999999999999999987631 14579999999999999999
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcC
Q psy6409 1628 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707 (1832)
Q Consensus 1628 ~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg 1707 (1832)
+..++.++..+.++..+.....+.+.+..+....|...|.+++.....+ +||||++++.|+.++..|...++.+..+||
T Consensus 254 ~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg 332 (434)
T 2db3_A 254 AGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHG 332 (434)
T ss_dssp HHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred HHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999988887777788999999999999999999999876544 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeC-CChhH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK-DDSHL 1786 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~-~d~~~ 1786 (1832)
++++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||+|+.|.|++|+++ .+...
T Consensus 333 ~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~ 412 (434)
T 2db3_A 333 DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412 (434)
T ss_dssp TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995 57889
Q ss_pred HHHHHHHhhcCCCCCCChhhcC
Q psy6409 1787 FYDLKQMMISSPVSTCPPELLN 1808 (1832)
Q Consensus 1787 ~~~l~~~l~~~~~~~~~~~L~~ 1808 (1832)
..++.+.+.... +.+|++|.+
T Consensus 413 ~~~l~~~l~~~~-~~vp~~l~~ 433 (434)
T 2db3_A 413 AADLVKILEGSG-QTVPDFLRT 433 (434)
T ss_dssp HHHHHHHHHHTT-CCCCGGGC-
T ss_pred HHHHHHHHHHcC-CCCCHHHHh
Confidence 999999998885 899999865
No 5
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-53 Score=537.20 Aligned_cols=385 Identities=42% Similarity=0.685 Sum_probs=342.0
Q ss_pred ceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchh
Q psy6409 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK 795 (1832)
Q Consensus 716 i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~ 795 (1832)
+.+.|.++|.|+.+|++++|++.++++|...||..|||+|.++||.++.|+|+|++||||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999988754221
Q ss_pred h---------hhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH
Q psy6409 796 I---------ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866 (1832)
Q Consensus 796 ~---------~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL 866 (1832)
. ........++++|||+||++||.|+++.+.+++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0 0001122457899999999999999999999998889999999999998888888888999999999999
Q ss_pred HHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC
Q psy6409 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946 (1832)
Q Consensus 867 ~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~ 946 (1832)
.+++..+.+.+..+++|||||||++++++|.+.+..++..... ......|++++|||+|
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~---------------------~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM---------------------PPKGVRHTMMFSATFP 221 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC---------------------CCBTTBEEEEEESCCC
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC---------------------CCcCCcEEEEEEEeCC
Confidence 9999988888999999999999999999999999999875421 1123579999999999
Q ss_pred hHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCC
Q psy6409 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGY 1025 (1832)
Q Consensus 947 ~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~ 1025 (1832)
+.+..++..++.+|..+.+.........+.+.+..+....+...+.+++... ...++||||+++..++.+++.|...++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (417)
T 2i4i_A 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY 301 (417)
T ss_dssp HHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC
Confidence 9999999999999988888777777778888888888889999999998875 567899999999999999999999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1026 ~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|++
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 302 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred CeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhc
Q psy6409 1106 KDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1106 ~~d~~~~~~l~~~l~~ 1121 (1832)
+.+...+..+.+.+..
T Consensus 382 ~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 382 ERNINITKDLLDLLVE 397 (417)
T ss_dssp GGGGGGHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9998888888877643
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.2e-53 Score=530.88 Aligned_cols=402 Identities=41% Similarity=0.660 Sum_probs=354.3
Q ss_pred cceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCc
Q psy6409 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469 (1832)
Q Consensus 1390 ~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p 1469 (1832)
.+.+.|..+|.++.+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+...+
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~ 81 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG 81 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999998775422
Q ss_pred hh---------hcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHH
Q psy6409 1470 KI---------ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540 (1832)
Q Consensus 1470 ~~---------~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~r 1540 (1832)
.. ........++++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 82 PGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161 (417)
T ss_dssp CCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHH
T ss_pred ccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHH
Confidence 10 000112235789999999999999999999998888999999999999888877788889999999999
Q ss_pred HHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccC
Q psy6409 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 1620 (1832)
Q Consensus 1541 l~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl 1620 (1832)
|.+++..+.+.+.++++|||||||++++++|.+.+..++...... .....|++++|||+
T Consensus 162 l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~i~~SAT~ 220 (417)
T 2i4i_A 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP---------------------PKGVRHTMMFSATF 220 (417)
T ss_dssp HHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC---------------------CBTTBEEEEEESCC
T ss_pred HHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC---------------------CcCCcEEEEEEEeC
Confidence 999999888889999999999999999999999999998754210 11357899999999
Q ss_pred ChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcC
Q psy6409 1621 PPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1699 (1832)
Q Consensus 1621 ~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~ 1699 (1832)
+..+..+...++..+..+.+.........+.+.+..+....+...+.+++... ...++||||+++.+++.++..|...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 221 PKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp CHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 99999999999999988887776667778888888888889999999999876 56789999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEe
Q psy6409 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779 (1832)
Q Consensus 1700 ~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~ 1779 (1832)
+.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHhhcCCCCCCChhhcCCCCCc
Q psy6409 1780 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQ 1813 (1832)
Q Consensus 1780 ~~~d~~~~~~l~~~l~~~~~~~~~~~L~~h~~a~ 1813 (1832)
++.|...+..+.+.+.... ..+|.+|.+.....
T Consensus 381 ~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 413 (417)
T 2i4i_A 381 NERNINITKDLLDLLVEAK-QEVPSWLENMAYEH 413 (417)
T ss_dssp CGGGGGGHHHHHHHHHHTT-CCCCHHHHHHHTCS
T ss_pred ccccHHHHHHHHHHHHHhc-CcCCHHHHHHHHhh
Confidence 9999999999999998875 78898876554433
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.7e-52 Score=521.67 Aligned_cols=370 Identities=29% Similarity=0.526 Sum_probs=336.1
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...+.+..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~--------- 100 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD--------- 100 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC---------
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHh---------
Confidence 34456778999999999999999999999999999999999999999999999999999999999987542
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
....++++|||+||++||.|+.+.+.+++...++.+..++||.....+...+..+++|+|+||++|.+++.++.+.+..+
T Consensus 101 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~ 180 (410)
T 2j0s_A 101 IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAI 180 (410)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhe
Confidence 12356799999999999999999999999999999999999999888888888899999999999999999888889999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
++|||||||++++++|...+..++..++ ...|++++|||+|+.+..+...++.+|
T Consensus 181 ~~vViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 235 (410)
T 2j0s_A 181 KMLVLDEADEMLNKGFKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDP 235 (410)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHTTSC-------------------------TTCEEEEEESCCCHHHHTTGGGTCSSC
T ss_pred eEEEEccHHHHHhhhhHHHHHHHHHhCc-------------------------cCceEEEEEcCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999887764 247999999999999988888999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 961 ATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039 (1832)
Q Consensus 961 ~~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 1039 (1832)
..+.+.........+.+.+..+.. ..+...+..++......++||||++++.++.+++.|...|+.+..+||++++.+|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (410)
T 2j0s_A 236 IRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER 315 (410)
T ss_dssp EEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred EEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHH
Confidence 888776666666677777766654 4488888888887777899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1040 ~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
..+++.|++|..+|||||+++++|||+|++++||+||+|.+...|+||+|||||.|+.|.|++|+++++...+..+.+++
T Consensus 316 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 316 ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp HHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCc
Q psy6409 1120 ISSPV 1124 (1832)
Q Consensus 1120 ~~~~~ 1124 (1832)
..++.
T Consensus 396 ~~~~~ 400 (410)
T 2j0s_A 396 STQID 400 (410)
T ss_dssp TCCCE
T ss_pred CCCce
Confidence 65543
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.2e-51 Score=511.11 Aligned_cols=376 Identities=29% Similarity=0.531 Sum_probs=337.4
Q ss_pred CCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcc
Q psy6409 1395 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 1474 (1832)
Q Consensus 1395 ~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~ 1474 (1832)
....+++..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~------- 101 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI------- 101 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-------
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-------
Confidence 3344566778999999999999999999999999999999999999999999999999999999999875421
Q ss_pred cccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCC
Q psy6409 1475 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQ 1554 (1832)
Q Consensus 1475 ~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~ 1554 (1832)
...++++|||+||++|+.|+++.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+.+
T Consensus 102 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 102 --QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp --TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred --ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 235678999999999999999999999988999999999999988887777788999999999999999988888999
Q ss_pred ceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1555 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1555 v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
+++|||||||++++++|...+..++..++ ...|++++|||++..+..+...++.+
T Consensus 180 ~~~vViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 234 (410)
T 2j0s_A 180 IKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTD 234 (410)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHTTSC-------------------------TTCEEEEEESCCCHHHHTTGGGTCSS
T ss_pred eeEEEEccHHHHHhhhhHHHHHHHHHhCc-------------------------cCceEEEEEcCCCHHHHHHHHHHcCC
Confidence 99999999999999999999988887764 34689999999999988888889999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
|..+.+.........+.+.+..+.. ..+...+..++......++||||+++..++.++..|...++.+..+||++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 235 PIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKE 314 (410)
T ss_dssp CEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred CEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHH
Confidence 8887766666666677777666554 448888888888777789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1793 (1832)
|..+++.|++|+++|||||+++++|||+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++.|...+..+.++
T Consensus 315 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~ 394 (410)
T 2j0s_A 315 RESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 394 (410)
T ss_dssp HHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCCCCCCChh
Q psy6409 1794 MISSPVSTCPPE 1805 (1832)
Q Consensus 1794 l~~~~~~~~~~~ 1805 (1832)
+... ...+|..
T Consensus 395 ~~~~-~~~~~~~ 405 (410)
T 2j0s_A 395 YSTQ-IDEMPMN 405 (410)
T ss_dssp TTCC-CEECCSC
T ss_pred hCCC-ceecccc
Confidence 7654 3455543
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-50 Score=507.89 Aligned_cols=370 Identities=30% Similarity=0.539 Sum_probs=320.5
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...+..+.+|+++++++.+++.|.++||..|+|+|.++|+.++.|+|+|++||||||||++|++|++..+..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~-------- 104 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------- 104 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT--------
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh--------
Confidence 344667789999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHccccccCC
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQ 879 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~~~~l~~ 879 (1832)
...++++||++||++||.|+.+.+.+++...++.+..++||.....+...+. .+++|+|+||++|.+.+.++.+.+..
T Consensus 105 -~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 105 -DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred -cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 2356789999999999999999999999888999999999998877766665 67899999999999999998888999
Q ss_pred ceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 880 ~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+++|||||||++.+++|...+..++..++ ...|++++|||+|+.+..+...++.+
T Consensus 184 ~~~vViDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 238 (414)
T 3eiq_A 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRD 238 (414)
T ss_dssp CCEEEECSHHHHHHTTTHHHHHHHHTTSC-------------------------TTCEEEEECSCCCHHHHHHHTTTCSS
T ss_pred CcEEEEECHHHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHcCC
Confidence 99999999999999999999999987774 24799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 1038 (1832)
|..+.+.........+.+.+..+. ...+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~ 318 (414)
T 3eiq_A 239 PIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKE 318 (414)
T ss_dssp CEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHH
T ss_pred CEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHH
Confidence 988877666666666777666554 4458888999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1039 R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
|..+++.|++|..+|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|+++++...+..+.++
T Consensus 319 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3eiq_A 319 RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398 (414)
T ss_dssp HHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhcCCc
Q psy6409 1119 MISSPV 1124 (1832)
Q Consensus 1119 l~~~~~ 1124 (1832)
++.+..
T Consensus 399 ~~~~~~ 404 (414)
T 3eiq_A 399 YNTSIE 404 (414)
T ss_dssp TTCCCE
T ss_pred HcCCcc
Confidence 765544
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.1e-49 Score=496.50 Aligned_cols=363 Identities=32% Similarity=0.552 Sum_probs=325.3
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCC
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 804 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~ 804 (1832)
.+..+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.. ...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---------~~~ 88 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---------KLN 88 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------ccC
Confidence 34568999999999999999999999999999999999999999999999999999999999976521 234
Q ss_pred CcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEE
Q psy6409 805 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884 (1832)
Q Consensus 805 ~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lV 884 (1832)
++++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 67899999999999999999999999889999999999988777777777899999999999999988888899999999
Q ss_pred EecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 885 iDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
|||||++.+.+|...+..++..++ ...|++++|||+|..+..+...++..|..+.
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLP-------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSC-------------------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EeCchHhhhhchHHHHHHHHHhCC-------------------------cCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 999999998888888888877664 2468999999999999999998988887654
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1044 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~ 1044 (1832)
+... .....+.+.+..+....+...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++
T Consensus 224 ~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 224 LMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp CCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred eccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Confidence 4322 334557777778888889899999988887889999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1045 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1045 ~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|++++|...+..+.+.+..+
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888766443
No 11
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-48 Score=489.48 Aligned_cols=371 Identities=31% Similarity=0.554 Sum_probs=328.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCC
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 1479 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~ 1479 (1832)
....+|++++|++.++++|..+||..|+|+|.++++.++.|++++++||||||||++|++|++..+.. ...
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---------~~~ 88 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---------KLN 88 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------TSC
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---------ccC
Confidence 34567999999999999999999999999999999999999999999999999999999999876532 224
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEE
Q psy6409 1480 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559 (1832)
Q Consensus 1480 ~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llV 1559 (1832)
++++||++|+++|+.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 67899999999999999999999998889999999999988777677777899999999999999988888899999999
Q ss_pred EccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1560 iDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
|||||++.+.+|...+..++..++ ...|++++|||++..+......++..|..+.
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLP-------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSC-------------------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EeCchHhhhhchHHHHHHHHHhCC-------------------------cCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 999999998888888888876664 3468999999999999988888888886654
Q ss_pred EcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHH
Q psy6409 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719 (1832)
Q Consensus 1640 i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~ 1719 (1832)
+.. ......+.+.+..+....+...+..++.....+++||||+++..++.++..|...++.+..+||++++.+|..+++
T Consensus 224 ~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 302 (400)
T 1s2m_A 224 LME-ELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFH 302 (400)
T ss_dssp CCS-SCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHH
T ss_pred ecc-ccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHH
Confidence 432 2334567777778888888889999998888889999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCC
Q psy6409 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1799 (1832)
Q Consensus 1720 ~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~ 1799 (1832)
.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+.+... .
T Consensus 303 ~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~-~ 381 (400)
T 1s2m_A 303 EFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE-I 381 (400)
T ss_dssp HHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC-C
T ss_pred HHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876433 3
Q ss_pred CCCChhh
Q psy6409 1800 STCPPEL 1806 (1832)
Q Consensus 1800 ~~~~~~L 1806 (1832)
..+|..+
T Consensus 382 ~~~~~~~ 388 (400)
T 1s2m_A 382 AAIPATI 388 (400)
T ss_dssp EECCSSC
T ss_pred ccccccc
Confidence 4555443
No 12
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-49 Score=497.85 Aligned_cols=377 Identities=30% Similarity=0.540 Sum_probs=321.6
Q ss_pred CCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccc
Q psy6409 1397 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476 (1832)
Q Consensus 1397 ~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~ 1476 (1832)
..+....+|+++++++.+++.|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 34 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~--------- 104 (414)
T 3eiq_A 34 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL--------- 104 (414)
T ss_dssp CCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---------
T ss_pred CccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---------
Confidence 34566788999999999999999999999999999999999999999999999999999999999976532
Q ss_pred cCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccccccCCc
Q psy6409 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRYLVLNQC 1555 (1832)
Q Consensus 1477 ~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~~~l~~v 1555 (1832)
...+.++|||+||++|+.|+++.+.+++...+..+..++|+.....+...+. .+++|+|+||++|.+.+....+.+..+
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 2246789999999999999999999999888999999999988877766655 678999999999999999888889999
Q ss_pred eeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1556 ~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
++|||||||++.+++|...+..++..++ ...|++++|||++..+..+...++.+|
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 239 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDP 239 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSC-------------------------TTCEEEEECSCCCHHHHHHHTTTCSSC
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 9999999999999999999998887764 347899999999999999999999999
Q ss_pred cEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHH
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R 1714 (1832)
..+.+.........+.+.+..+.. ..+...+..++......++||||+++..++.++..|...++.+..+||++++.+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r 319 (414)
T 3eiq_A 240 IRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKER 319 (414)
T ss_dssp EEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHH
T ss_pred EEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHH
Confidence 887776666666666676665544 4588889999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1715 ~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
..+++.|++|+++|||||+++++|||+|++++||+|++|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+++
T Consensus 320 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 320 DVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp HHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCCChhhcC
Q psy6409 1795 ISSPVSTCPPELLN 1808 (1832)
Q Consensus 1795 ~~~~~~~~~~~L~~ 1808 (1832)
... ...+|..+.+
T Consensus 400 ~~~-~~~~~~~~~~ 412 (414)
T 3eiq_A 400 NTS-IEEMPLNVAD 412 (414)
T ss_dssp TCC-CEECCC----
T ss_pred cCC-ccccChhhhh
Confidence 665 4666666543
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.2e-48 Score=491.34 Aligned_cols=363 Identities=29% Similarity=0.490 Sum_probs=319.0
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
+.++.+|++++|++.++++|.+.||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+..
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------- 91 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 91 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------
Confidence 456789999999999999999999999999999999999997 999999999999999999999976522
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCC
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQ 879 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~ 879 (1832)
...++++|||+||++||.|+.+.+.+++..+ ++.+...+|+....... ..+++|+|+||++|.+.+.+ +.+.+.+
T Consensus 92 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 92 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 2356789999999999999999999997764 67888888887654332 34689999999999999865 5667899
Q ss_pred ceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC
Q psy6409 880 CTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958 (1832)
Q Consensus 880 ~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~ 958 (1832)
+++|||||||++++ .+|...+..++..++ ...|++++|||+++.+..++..++.
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~ 223 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVP 223 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------CCceEEEEEeecCHHHHHHHHHhcC
Confidence 99999999999987 678888888877664 2479999999999999999999999
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 959 RPATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037 (1832)
Q Consensus 959 ~p~~v~~~~~~~~~~~i~q~~~~~~-~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~ 1037 (1832)
+|..+.+.........+.+.+..+. ...+...+..++......++||||+++..|+.++..|...++.+..+||+|++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 303 (412)
T 3fht_A 224 DPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVE 303 (412)
T ss_dssp SCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHH
T ss_pred CCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHH
Confidence 9988887776666777777766654 466788888888877788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEEEEEecCCC-ch
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SH 1110 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~ 1110 (1832)
+|..+++.|++|+++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|..|.|++|+++.+ ..
T Consensus 304 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 383 (412)
T 3fht_A 304 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 383 (412)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHH
Confidence 99999999999999999999999999999999999999999 578999999999999999999999999764 67
Q ss_pred HHHHHHHHHhcCC
Q psy6409 1111 LFYDLKQMMISSP 1123 (1832)
Q Consensus 1111 ~~~~l~~~l~~~~ 1123 (1832)
.+..+.+.++...
T Consensus 384 ~~~~i~~~~~~~~ 396 (412)
T 3fht_A 384 ILNRIQEHFNKKI 396 (412)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcc
Confidence 7888888776543
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.1e-49 Score=514.03 Aligned_cols=373 Identities=32% Similarity=0.487 Sum_probs=309.1
Q ss_pred cccCcccCC-CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 726 PVRNWKEAS-LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 726 p~~~f~~~~-L~~~l~~~l~~~g~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
++..|.+.+ |+++++++|.++||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+..... ..
T Consensus 69 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~ 143 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DS 143 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cc
Confidence 334443333 99999999999999999999999999999 67899999999999999999999998864321 12
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcC----CCCCeEEEEEcCCchHHHHHHH-hcCCceeecCHHHHHHHHHcc-ccc
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENR-YLV 876 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~----~~~i~v~~~~Gg~~~~~~~~~l-~~~~~IlV~TP~rL~d~l~~~-~~~ 876 (1832)
..++++|||+||++||.|+++.+.++.. ..++.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...
T Consensus 144 ~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 3467899999999999999999998643 2246788899999887776666 447999999999999998765 346
Q ss_pred cCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 877 l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
+..+++|||||||+|++++|.+.+..|+..++.. ........|+++||||+|+.+..++..+
T Consensus 224 ~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 285 (563)
T 3i5x_A 224 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEK------------------NSKSADNIKTLLFSATLDDKVQKLANNI 285 (563)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH------------------CSSCTTCCEEEEEESSCCTHHHHHTTTT
T ss_pred cccceEEEEeCHHHHhccchHHHHHHHHHhhhhc------------------cccCccCceEEEEEccCCHHHHHHHHHh
Confidence 8899999999999999999999999998776311 1112245799999999999999999999
Q ss_pred cCCCcEEEEcccC----CCCcceEEEEEEcch-hhH----HHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc---
Q psy6409 957 LRRPATVYIGSVG----KPTERIEQIVYILSE-QDK----RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL--- 1023 (1832)
Q Consensus 957 l~~p~~v~~~~~~----~~~~~i~q~~~~~~~-~~k----~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~--- 1023 (1832)
+..|..+.+.... .....+.+.+..... ..+ ...+...+.. ....++||||+++..|+.++..|...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~ 365 (563)
T 3i5x_A 286 MNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK 365 (563)
T ss_dssp CCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC
Confidence 9988777664432 223445555544432 222 2233333332 46679999999999999999999987
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEE
Q psy6409 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103 (1832)
Q Consensus 1024 g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~ 1103 (1832)
++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|..|.|++|
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCchHHHHHHHHHhc
Q psy6409 1104 CTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1104 ~~~~d~~~~~~l~~~l~~ 1121 (1832)
++++|..++..|.+....
T Consensus 446 ~~~~e~~~~~~l~~~~~~ 463 (563)
T 3i5x_A 446 ICKDELPFVRELEDAKNI 463 (563)
T ss_dssp EEGGGHHHHHHHHHHHCC
T ss_pred EchhHHHHHHHHHHHhCC
Confidence 999999998888876543
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.4e-49 Score=513.87 Aligned_cols=363 Identities=33% Similarity=0.497 Sum_probs=306.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
|+++++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|++..+..... ....++++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78999999999999999999999988754221 123467999999
Q ss_pred cchhHHHHHHHHHHHhcC----CCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc-ccccCCceeEEEe
Q psy6409 813 PTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 886 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~----~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~lViD 886 (1832)
||++||.|+...+.+++. ...+.+..++||.....+...+. .+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 999999999999998752 23567889999998887776664 47999999999999999775 4578899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||+|++++|.+.+..|+..++.. ........|+++||||+|+.+..++..++..|..+.+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~------------------~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEK------------------NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHH------------------CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhh------------------hcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 999999999999999998776411 11122357999999999999999999999988777665
Q ss_pred ccC----CCCcceEEEEEEcch-hhH----HHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHHHc---CCcEEEEcCC
Q psy6409 967 SVG----KPTERIEQIVYILSE-QDK----RKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHGG 1033 (1832)
Q Consensus 967 ~~~----~~~~~i~q~~~~~~~-~~k----~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~~~---g~~v~~lhg~ 1033 (1832)
... .....+.+.+..... ..+ ...+...+.. ....++||||+++..|+.++..|... ++.+..+||+
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~ 324 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred ecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 432 223445555554433 222 2333333333 45678999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHH
Q psy6409 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113 (1832)
Q Consensus 1034 ~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~ 1113 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++..|+||+|||||+|..|.|++|+++.|..++.
T Consensus 325 ~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~ 404 (579)
T 3sqw_A 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404 (579)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHh
Q psy6409 1114 DLKQMMI 1120 (1832)
Q Consensus 1114 ~l~~~l~ 1120 (1832)
.+.+...
T Consensus 405 ~l~~~~~ 411 (579)
T 3sqw_A 405 ELEDAKN 411 (579)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 8887643
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.7e-48 Score=484.67 Aligned_cols=358 Identities=30% Similarity=0.545 Sum_probs=318.2
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 57999999999999999999999999999999999999999999999999999999999876422 234678
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+||++||++|+.|+.+.+.++.... ++++..++||.....+...+..+ ++|+|+||++|.+++.+....+..+++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 9999999999999999999998776 79999999999877776666544 799999999999999888888999999999
Q ss_pred ecchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE
Q psy6409 886 DEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964 (1832)
Q Consensus 886 DEaH~l~d~-gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~ 964 (1832)
||||++.++ +|...+..++..++ ...|++++|||+++.+..++..++.+|..+.
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred eCHHHHhhccchHHHHHHHHhhCC-------------------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 999999874 67777777776553 3479999999999999999999999998877
Q ss_pred EcccCC-CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 965 IGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 965 ~~~~~~-~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il 1043 (1832)
+..... ....+.+.+..+....+...+..++.....+++||||++++.++.+++.|...|+.+..+||++++.+|..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 214 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp CCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 655432 3355677777788888999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHH
Q psy6409 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMM 1119 (1832)
Q Consensus 1044 ~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l 1119 (1832)
+.|++|+.+|||||+++++|||+|++++||+|++|.+...|+||+||+||.|+.|.|++|++++ +..++..+.+.+
T Consensus 294 ~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (391)
T 1xti_A 294 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRF 370 (391)
T ss_dssp HHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999976 445666776654
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.6e-48 Score=482.74 Aligned_cols=358 Identities=32% Similarity=0.547 Sum_probs=314.5
Q ss_pred CcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+...+|++++|++.++++|.+.||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+.. .
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~ 72 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------E 72 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------T
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------C
Confidence 34679999999999999999999999999999999999998 999999999999999999999876522 2
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCcee
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
..++++||++||++|+.|+.+.+.+++...++.+..++|+...... ..+++|+|+||++|.+.+.+....+.++++
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 148 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKI 148 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCE
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCE
Confidence 3577899999999999999999999998889998888887653322 236899999999999999888888999999
Q ss_pred EEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 883 IVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 883 lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
|||||||++.+ .++...+..+...++ ...|++++|||+++.+..+...++.++.
T Consensus 149 iIiDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 203 (395)
T 3pey_A 149 FVLDEADNMLDQQGLGDQCIRVKRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNAN 203 (395)
T ss_dssp EEEETHHHHHHSTTHHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSCSCE
T ss_pred EEEEChhhhcCccccHHHHHHHHHhCC-------------------------CCcEEEEEEecCCHHHHHHHHHhCCCCe
Confidence 99999999988 678888887777664 3479999999999999999999999888
Q ss_pred EEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+...........+.+.+..+ ....+...+..++.....+++||||+++..|+.+++.|...++.+..+||++++.+|.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 283 (395)
T 3pey_A 204 TLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERD 283 (395)
T ss_dssp EECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHH
T ss_pred EEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 877766666666677766665 4566777788888777788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC------CHhHHHHHhcccccCCCCcEEEEEecCCC-chHHH
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFY 1113 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~------s~~~yvQr~GRaGR~g~~G~ai~~~~~~d-~~~~~ 1113 (1832)
.+++.|++|+++|||||+++++|||+|++++||+||+|. +..+|+||+|||||.|..|.|++|+++.+ ..++.
T Consensus 284 ~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 363 (395)
T 3pey_A 284 RLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILS 363 (395)
T ss_dssp HHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999754 45566
Q ss_pred HHHHHHh
Q psy6409 1114 DLKQMMI 1120 (1832)
Q Consensus 1114 ~l~~~l~ 1120 (1832)
.+.+.+.
T Consensus 364 ~i~~~~~ 370 (395)
T 3pey_A 364 AIQKYFG 370 (395)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 6666543
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.1e-50 Score=516.24 Aligned_cols=370 Identities=29% Similarity=0.493 Sum_probs=179.8
Q ss_pred ceecCCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHHHH
Q psy6409 716 ITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWI 790 (1832)
Q Consensus 716 i~~~~~~~p~p---~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~~i 790 (1832)
+.+.+.+.|.| +.+|.+++|++.++++|..+||..|+|+|.++||.++.+ +|+|++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34445555544 678999999999999999999999999999999999987 9999999999999999999998654
Q ss_pred hhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHH
Q psy6409 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869 (1832)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~ 869 (1832)
. ....++++|||+||++||.|++..+.+++... ++.+...+|+...... ...+++|+|+||++|.++
T Consensus 157 ~---------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 157 E---------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp C---------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred h---------hcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 2 12356789999999999999999999987654 5778888887664332 133679999999999999
Q ss_pred HHc-cccccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh
Q psy6409 870 LEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 870 l~~-~~~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
+.+ +.+.+.++++|||||||+|++ .+|...+..++..++ ...|+++||||++.
T Consensus 225 l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFED 279 (479)
T ss_dssp HTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC-------------------------TTSEEEEEESCCCH
T ss_pred HHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC-------------------------ccceEEEEeCCCCH
Confidence 965 456789999999999999997 678888887776654 34799999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 948 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 948 ~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
.+..++..++.+|..+.+.........+.+.+..+.. ..+...+..++......++||||+++..|+.++..|...++.
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~ 359 (479)
T 3fmp_B 280 SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQ 359 (479)
T ss_dssp HHHHHHHHHSSSEEEEEEC-------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCcc
Confidence 9999999999999888887766666667776665543 567777777777777789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEE
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLA 1100 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~a 1100 (1832)
+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+| .+..+|+||+|||||+|+.|.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999 5678999999999999999999
Q ss_pred EEEecCCC-chHHHHHHHHHhcC
Q psy6409 1101 VSFCTKDD-SHLFYDLKQMMISS 1122 (1832)
Q Consensus 1101 i~~~~~~d-~~~~~~l~~~l~~~ 1122 (1832)
++|+++.+ ..++..+.++++..
T Consensus 440 i~~~~~~~~~~~~~~i~~~~~~~ 462 (479)
T 3fmp_B 440 VNMVDSKHSMNILNRIQEHFNKK 462 (479)
T ss_dssp -----------------------
T ss_pred EEEEcCcchHHHHHHHHHHhCCC
Confidence 99999775 66777777665443
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-47 Score=473.00 Aligned_cols=355 Identities=35% Similarity=0.565 Sum_probs=319.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
.+|++++|++.++++|.+.||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+. ...++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~----------~~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----------ENNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----------SSSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc----------ccCCC
Confidence 47999999999999999999999999999999999998 79999999999999999999987542 13577
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++|+++|+.|+.+.+.++....++.+..++||.....+...+. +++|+|+||++|.+.+..+...+.++++||+|
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 154 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEe
Confidence 89999999999999999999998888899999999998776655554 79999999999999998888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.+++|...+..++..++ ...+++++|||++..+..+...++.++..+...
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 209 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACN-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKAK 209 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSC-------------------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC
T ss_pred CchHhhhhchHHHHHHHHHhCC-------------------------CCceEEEEeeccCHHHHHHHHHHcCCCeEEEec
Confidence 9999999999999988887663 346899999999999988888888876554432
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F 1046 (1832)
....+.+.+..+....+...+..++. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|
T Consensus 210 ----~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 210 ----INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp ----SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred ----CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 22356677777788889988888887 5667899999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcCC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~ 1123 (1832)
++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+|||||.|+.|.|++++++.|...+..+.+.+..+.
T Consensus 285 ~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 361 (367)
T 1hv8_A 285 KQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361 (367)
T ss_dssp HTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCC
T ss_pred HcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776543
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-47 Score=478.68 Aligned_cols=369 Identities=30% Similarity=0.536 Sum_probs=322.5
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
.+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 46999999999999999999999999999999999999999999999999999999999876432 234678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+||++||++|+.|+++.+.++.... ++++..++|+.........+.. .++|+|+||++|..++......+.++++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 9999999999999999999997766 7899999999887766655544 4799999999999999888888999999999
Q ss_pred ccchhhhcC-CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEE
Q psy6409 1561 DEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639 (1832)
Q Consensus 1561 DEaH~ll~~-gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~ 1639 (1832)
||||++.++ ++...+..++...+ ...|++++|||+++.+..+...++..|..+.
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred eCHHHHhhccchHHHHHHHHhhCC-------------------------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 999999874 67777777776554 3478999999999999999999999988777
Q ss_pred EcccCC-CCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHH
Q psy6409 1640 IGSVGK-PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1640 i~~~~~-~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il 1718 (1832)
+..... ....+.+.+..+....+...+..++.....+++||||+++.+|+.++..|...++.+..+||++++.+|..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 293 (391)
T 1xti_A 214 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293 (391)
T ss_dssp CCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Confidence 655432 3355677777788888999999999888889999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHHHHHHhhcC
Q psy6409 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYDLKQMMISS 1797 (1832)
Q Consensus 1719 ~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~l~~~l~~~ 1797 (1832)
+.|++|+.+|||||+++++|||+|++++||+|++|.+..+|+||+||+||.|+.|.|++|+++.+ ..++..+.+.+. .
T Consensus 294 ~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 372 (391)
T 1xti_A 294 QQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE-V 372 (391)
T ss_dssp HHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTT-C
T ss_pred HHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhc-C
Confidence 99999999999999999999999999999999999999999999999999999999999999874 566666766553 3
Q ss_pred CCCCCChhh
Q psy6409 1798 PVSTCPPEL 1806 (1832)
Q Consensus 1798 ~~~~~~~~L 1806 (1832)
+...+|.++
T Consensus 373 ~~~~~~~~~ 381 (391)
T 1xti_A 373 NISELPDEI 381 (391)
T ss_dssp CCEECCSCC
T ss_pred ChhhCCccc
Confidence 345666553
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-49 Score=496.15 Aligned_cols=365 Identities=30% Similarity=0.528 Sum_probs=189.0
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccc
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~ 801 (1832)
...++..+|++++|++.++++|..+||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~--------- 85 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------- 85 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------
Confidence 34567788999999999999999999999999999999999999999999999999999999999976532
Q ss_pred cCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 802 ~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
...++++||++||++|+.|+.+.+.+++...++++..++||.....+...+. +++|+|+||++|.+.+.+..+.+..++
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIK 164 (394)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCc
Confidence 2357799999999999999999999999889999999999998766655544 689999999999999988888889999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+||+||||++.+++|...+..++..++ ...|++++|||+++.+..+...++..|.
T Consensus 165 ~vIiDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 219 (394)
T 1fuu_A 165 MFILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPV 219 (394)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHCCSCE
T ss_pred EEEEEChHHhhCCCcHHHHHHHHHhCC-------------------------CCceEEEEEEecCHHHHHHHHHhcCCCe
Confidence 999999999999999999999988774 2368999999999999999999999998
Q ss_pred EEEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHH
Q psy6409 962 TVYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 962 ~v~~~~~~~~~~~i~q~~~~~~~~-~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 1040 (1832)
.+.+.........+.+.+..+... .+...+..++......++||||++++.++.+++.|...++.+..+||++++.+|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~ 299 (394)
T 1fuu_A 220 RILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERD 299 (394)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred EEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHH
Confidence 887766554445555555444433 3666777777766778999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
.+++.|++|..+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|+.|.|++|++++|...+..+.+.+.
T Consensus 300 ~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 300 TIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877776554
Q ss_pred c
Q psy6409 1121 S 1121 (1832)
Q Consensus 1121 ~ 1121 (1832)
.
T Consensus 380 ~ 380 (394)
T 1fuu_A 380 T 380 (394)
T ss_dssp -
T ss_pred C
Confidence 3
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.1e-47 Score=475.27 Aligned_cols=365 Identities=32% Similarity=0.545 Sum_probs=316.5
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
...+|++++|++.++++|...||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. ..
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~~ 73 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------ED 73 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------TC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------CC
Confidence 4578999999999999999999999999999999999998 999999999999999999999876532 23
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
.++++|||+||++|+.|+++.+++++...++.+..++|+...... ..+++|+|+||+++.+.+.+....+.++++|
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~i 149 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIF 149 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEE
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEE
Confidence 567899999999999999999999998888888888877654322 3368999999999999999888889999999
Q ss_pred EEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1559 VLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1559 ViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||||||++.+ .++...+..+...++ ...|++++|||+++.+..+...++..+..
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 204 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANT 204 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSCSCEE
T ss_pred EEEChhhhcCccccHHHHHHHHHhCC-------------------------CCcEEEEEEecCCHHHHHHHHHhCCCCeE
Confidence 9999999988 677777877777664 34689999999999999999999988888
Q ss_pred EEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~-~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+...........+.+.+..+ ....+...+..++.....+++||||+++.+|+.++..|...++.+..+||++++.+|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (395)
T 3pey_A 205 LELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDR 284 (395)
T ss_dssp ECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred EEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 77766666666677766665 45567777778887777889999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC------CHHHHHHHhcccccCCCccEEEEEeeCCC-hhHHHH
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK------SIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHLFYD 1789 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~------s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~~~~ 1789 (1832)
+++.|++|+++|||||+++++|||+|++++||+||+|. |..+|+||+|||||.|+.|.|++|+++.+ ..++..
T Consensus 285 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 364 (395)
T 3pey_A 285 LIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSA 364 (395)
T ss_dssp HHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999764 455666
Q ss_pred HHHHhhcCCCCCCC
Q psy6409 1790 LKQMMISSPVSTCP 1803 (1832)
Q Consensus 1790 l~~~l~~~~~~~~~ 1803 (1832)
+.+.+...+...+|
T Consensus 365 i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 365 IQKYFGDIEMTRVP 378 (395)
T ss_dssp HHHHTTSCCCEECC
T ss_pred HHHHhCCceeecCC
Confidence 66655423333333
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.7e-47 Score=477.74 Aligned_cols=360 Identities=30% Similarity=0.498 Sum_probs=315.0
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
.++.+|++++|++.++++|..+||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+.. .
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~ 92 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------A 92 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------T
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---------c
Confidence 45778999999999999999999999999999999999987 999999999999999999999876532 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc-cccccCCc
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQC 1555 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v 1555 (1832)
..++++|||+||++|+.|+++.+.+++... ++.+....|+...... ...+++|+|+||++|.+++.+ ..+.+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 346789999999999999999999987654 6777778877664432 234689999999999999865 56678999
Q ss_pred eeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCC
Q psy6409 1556 TYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634 (1832)
Q Consensus 1556 ~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~ 1634 (1832)
++|||||||++++ .++...+..+...++ ...|++++|||+++.+..+...++.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 224 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPD 224 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSC-------------------------TTCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCC-------------------------CCceEEEEEeecCHHHHHHHHHhcCC
Confidence 9999999999987 678888887777664 34799999999999999999999999
Q ss_pred CcEEEEcccCCCCcceEEEEEEcc-hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHH
Q psy6409 1635 PATVYIGSVGKPTERIEQIVYILS-EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713 (1832)
Q Consensus 1635 p~~v~i~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~ 1713 (1832)
|..+.+.........+.+.+..+. ...+...+..++......++||||+++.+|+.++..|...++.+..+||+|++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 225 PNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQ 304 (412)
T ss_dssp CEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred CeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHH
Confidence 988877776666677777766654 4567788888888777889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEEEEEeeCCC-hhH
Q psy6409 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-SHL 1786 (1832)
Q Consensus 1714 R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d-~~~ 1786 (1832)
|..+++.|++|+++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|+.|.|++|+++.+ ...
T Consensus 305 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 384 (412)
T 3fht_A 305 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 384 (412)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHH
Confidence 9999999999999999999999999999999999999999 578999999999999999999999999775 677
Q ss_pred HHHHHHHhhc
Q psy6409 1787 FYDLKQMMIS 1796 (1832)
Q Consensus 1787 ~~~l~~~l~~ 1796 (1832)
+..+.+.+..
T Consensus 385 ~~~i~~~~~~ 394 (412)
T 3fht_A 385 LNRIQEHFNK 394 (412)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
Confidence 7777776643
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.6e-49 Score=489.55 Aligned_cols=376 Identities=30% Similarity=0.523 Sum_probs=187.2
Q ss_pred CCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccccc
Q psy6409 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477 (1832)
Q Consensus 1398 ~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~ 1477 (1832)
...+..+|++++|++.+++.|..+||..|+|+|.++++.++.|++++++||||||||++|++|++..+.. .
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~---------~ 86 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---------S 86 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------T
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------c
Confidence 4456678999999999999999999999999999999999999999999999999999999999876532 2
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1478 ~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
..++++||++|+++|+.|+++.+.+++...++++..++|+.........+. +++|+|+||+++.+.+......+.++++
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 165 (394)
T 1fuu_A 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165 (394)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcE
Confidence 356789999999999999999999999888999999999988766544444 6899999999999999888888899999
Q ss_pred EEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcE
Q psy6409 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637 (1832)
Q Consensus 1558 lViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~ 1637 (1832)
||+||||++.+++|...+..++..++ ...|++++|||+++.+..+...++..|..
T Consensus 166 vIiDEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 220 (394)
T 1fuu_A 166 FILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 220 (394)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHCCSCEE
T ss_pred EEEEChHHhhCCCcHHHHHHHHHhCC-------------------------CCceEEEEEEecCHHHHHHHHHhcCCCeE
Confidence 99999999999999999999988775 34689999999999998889899999888
Q ss_pred EEEcccCCCCcceEEEEEEcchh-hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHH
Q psy6409 1638 VYIGSVGKPTERIEQIVYILSEQ-DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1638 v~i~~~~~~~~~i~q~~~~~~~~-~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~ 1716 (1832)
+.+.........+.+.+..+... .+...+..++......++||||+++.+++.++..|...++.+..+||++++.+|..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~ 300 (394)
T 1fuu_A 221 ILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 300 (394)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHH
Confidence 77765544444555554444433 36667777777667789999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+||+||.|+.|.|++|+++.|...+..+.+++..
T Consensus 301 ~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 301 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888876654
Q ss_pred CCCCCCChhhcCC
Q psy6409 1797 SPVSTCPPELLNH 1809 (1832)
Q Consensus 1797 ~~~~~~~~~L~~h 1809 (1832)
. ...+|..+.+.
T Consensus 381 ~-~~~~~~~~~~~ 392 (394)
T 1fuu_A 381 Q-IEELPSDIATL 392 (394)
T ss_dssp -------------
T ss_pred c-ccccCcchhhh
Confidence 4 45666655443
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.2e-47 Score=497.80 Aligned_cols=362 Identities=33% Similarity=0.505 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il--~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
|++.++++|..+||..|+|+|.++|+.++ .|+|+|++||||||||++|++|++..+..... ....++++|||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lvl~ 102 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 102 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cccCCCeEEEEc
Confidence 99999999999999999999999999999 78899999999999999999999988765321 123467899999
Q ss_pred CcHHHHHHHHHHHHHhcC----CCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHcc-ccccCCceeEEEc
Q psy6409 1488 PTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLD 1561 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~----~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llViD 1561 (1832)
||++||.|+++.+.+++. ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...+..+++||||
T Consensus 103 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 103 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 999999999999998752 23467888999988777766664 47999999999999998765 4578899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||+|++++|.+.+..|+..++... ......+|+++||||+++.+..++..++..|..+.+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~ 244 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKN------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLD 244 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHC------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhh------------------cccccCceEEEEeccCChHHHHHHHHHcCCCceEEEe
Confidence 9999999999999999987764211 1112357999999999999999999999988777665
Q ss_pred ccC----CCCcceEEEEEEcch-hhHH----HHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc---CCcEEEEcCC
Q psy6409 1642 SVG----KPTERIEQIVYILSE-QDKR----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHGG 1708 (1832)
Q Consensus 1642 ~~~----~~~~~i~q~~~~~~~-~~k~----~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~---~~~v~~lHg~ 1708 (1832)
... .....+.+.+..... ..+. ..+...+.. ....++||||+++..|+.++..|... ++.+..+||+
T Consensus 245 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~ 324 (579)
T 3sqw_A 245 TVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324 (579)
T ss_dssp SSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTT
T ss_pred ecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 432 223345555544432 2222 233333333 46779999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.++.+|+||+|||||+|+.|.|++|+++.+..++.
T Consensus 325 ~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~ 404 (579)
T 3sqw_A 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVR 404 (579)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHH
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q psy6409 1789 DLKQMM 1794 (1832)
Q Consensus 1789 ~l~~~l 1794 (1832)
.+....
T Consensus 405 ~l~~~~ 410 (579)
T 3sqw_A 405 ELEDAK 410 (579)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887764
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.9e-47 Score=496.62 Aligned_cols=363 Identities=33% Similarity=0.505 Sum_probs=303.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEE
Q psy6409 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486 (1832)
Q Consensus 1409 ~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il--~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiL 1486 (1832)
.|++.++++|..+||..|+|+|.++|+.++ .++|+|++||||||||++|++|++..+..... ....++++|||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil 152 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIV 152 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEE
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEE
Confidence 399999999999999999999999999999 67899999999999999999999988765321 12346789999
Q ss_pred cCcHHHHHHHHHHHHHhcC----CCCCeEEEEECCcchHHHHHHh-hcCCcEEEeCHHHHHHHHHcc-ccccCCceeEEE
Q psy6409 1487 APTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVL 1560 (1832)
Q Consensus 1487 aPtreLa~Qi~~~~~~~~~----~~g~~v~~l~gg~~~~~~~~~l-~~~~~IiVaTP~rl~~~l~~~-~~~l~~v~llVi 1560 (1832)
+||++||.|+++.++++.. ..+..+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+.++++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 9999999999999998642 2246688889998877766555 447999999999999998775 346889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||+|++++|.+.+..|+..++... ......+|+++||||+++.+..++..++..+..+.+
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~------------------~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~ 294 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKN------------------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFL 294 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHC------------------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhcc------------------ccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999987764211 112245799999999999999999999988877766
Q ss_pred cccC----CCCcceEEEEEEcch-hhHH----HHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHHHc---CCcEEEEcC
Q psy6409 1641 GSVG----KPTERIEQIVYILSE-QDKR----KKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKL---GYNACTLHG 1707 (1832)
Q Consensus 1641 ~~~~----~~~~~i~q~~~~~~~-~~k~----~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~~~---~~~v~~lHg 1707 (1832)
.... .....+.+.+..... ..+. ..+...+.. ....++||||+|+..|+.++..|... ++.+..+||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~ 374 (563)
T 3i5x_A 295 DTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG 374 (563)
T ss_dssp ESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEEST
T ss_pred eccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecC
Confidence 4432 223345555544432 2222 223333333 46779999999999999999999987 899999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~ 1787 (1832)
+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+..++
T Consensus 375 ~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 454 (563)
T 3i5x_A 375 KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 454 (563)
T ss_dssp TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy6409 1788 YDLKQMM 1794 (1832)
Q Consensus 1788 ~~l~~~l 1794 (1832)
..+.+..
T Consensus 455 ~~l~~~~ 461 (563)
T 3i5x_A 455 RELEDAK 461 (563)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887664
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-46 Score=461.18 Aligned_cols=354 Identities=36% Similarity=0.568 Sum_probs=317.1
Q ss_pred cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
..+|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++.||||||||++|++|++..+.. ..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~ 74 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNG 74 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCC
Confidence 357999999999999999999999999999999999988 799999999999999999999876432 246
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+++||++|+++|+.|+++.+.+++...++.+..++|+.....+...+. +++|+|+||+++.+.+......+.++++||+
T Consensus 75 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 75 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 789999999999999999999998888899999999988776655444 7899999999999999888888999999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||++.+++|...+..++..++ ...+++++|||++.........++.++..+..
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 208 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACN-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA 208 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSC-------------------------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC
T ss_pred eCchHhhhhchHHHHHHHHHhCC-------------------------CCceEEEEeeccCHHHHHHHHHHcCCCeEEEe
Confidence 99999999999988888887664 34689999999999998888888877655443
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
. ....+.+.+..+....+...+..++. ....++||||+++..++.++..|...++.+..+||++++.+|..+++.
T Consensus 209 ~----~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 283 (367)
T 1hv8_A 209 K----INANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRL 283 (367)
T ss_dssp C----SSSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHH
T ss_pred c----CCCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHH
Confidence 2 23356677777788888888888887 566789999999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+..
T Consensus 284 f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 284 FKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred HHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887754
No 28
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.7e-48 Score=500.06 Aligned_cols=367 Identities=29% Similarity=0.500 Sum_probs=177.1
Q ss_pred ceecCCCCCCC---cCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHH
Q psy6409 1391 ITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWI 1465 (1832)
Q Consensus 1391 i~~~~~~~p~p---~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l 1465 (1832)
+.+.+...+.| +.+|.+++|++.++++|..+||..|+|+|.++++.++.+ +|+|++||||||||++|++|++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 33444444443 568999999999999999999999999999999999987 9999999999999999999998654
Q ss_pred hhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCC-CCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHH
Q psy6409 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544 (1832)
Q Consensus 1466 ~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~-g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~ 1544 (1832)
.. ...++++|||+||++|+.|++..+.+++... ++.+....++...... ...+++|+|+||++|.++
T Consensus 157 ~~---------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~ 224 (479)
T 3fmp_B 157 EP---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDW 224 (479)
T ss_dssp CT---------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHH
T ss_pred hh---------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHH
Confidence 22 2346689999999999999999999987654 5677777776654322 133679999999999999
Q ss_pred HHc-cccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh
Q psy6409 1545 LEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622 (1832)
Q Consensus 1545 l~~-~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~ 1622 (1832)
+.+ ..+.+.++++|||||||+|++ .+|...+..++..++ ..+|++++|||++.
T Consensus 225 l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 225 CSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATFED 279 (479)
T ss_dssp HTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC-------------------------TTSEEEEEESCCCH
T ss_pred HHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC-------------------------ccceEEEEeCCCCH
Confidence 965 456789999999999999987 577777777776654 34799999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCc
Q psy6409 1623 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701 (1832)
Q Consensus 1623 ~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~ 1701 (1832)
.+..++..++.+|..+.+.........+.+.+..+.. ..+...++.++......++||||+++.+|+.++..|...++.
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~ 359 (479)
T 3fmp_B 280 SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQ 359 (479)
T ss_dssp HHHHHHHHHSSSEEEEEEC-------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCcc
Confidence 9999999999999888877766666666666655543 567777888887777789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEE
Q psy6409 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLA 1775 (1832)
Q Consensus 1702 v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~a 1775 (1832)
+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+| .++.+|+||+|||||+|+.|.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999 4678999999999999999999
Q ss_pred EEEeeCCC-hhHHHHHHHHh
Q psy6409 1776 VSFCTKDD-SHLFYDLKQMM 1794 (1832)
Q Consensus 1776 i~~~~~~d-~~~~~~l~~~l 1794 (1832)
++|+++.+ ..++..+.+.+
T Consensus 440 i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 440 VNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp --------------------
T ss_pred EEEEcCcchHHHHHHHHHHh
Confidence 99999875 55665555544
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.9e-46 Score=451.88 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=291.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|++.+.++|+++||..|+|+|.++++.+++|++++++||||||||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999999742 5679999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC
Q psy6409 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894 (1832)
Q Consensus 815 reLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~ 894 (1832)
++|+.|+.+.+.+++...++.+..++||.....+...+. .++|+|+||++|.+.+....+.+..+++||+||||++.++
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 999999999999999888999999999998776655554 5999999999999999888778899999999999999999
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcc
Q psy6409 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974 (1832)
Q Consensus 895 gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~ 974 (1832)
+|...+..++..++ ...+++++|||+|+.+......++.++..+... .....
T Consensus 145 ~~~~~~~~~~~~~~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 196 (337)
T 2z0m_A 145 GFIDDIKIILAQTS-------------------------NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLAN 196 (337)
T ss_dssp TCHHHHHHHHHHCT-------------------------TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGG
T ss_pred ccHHHHHHHHhhCC-------------------------cccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCC
Confidence 99999999888764 236889999999999999999998887665322 22344
Q ss_pred eEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VL 1054 (1832)
+.+.+..+....+ .....+......++||||++++.++.+++.|. .+..+||+++..+|..+++.|++|+.+||
T Consensus 197 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 197 VEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred ceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 5555555544332 23356666778899999999999999998886 68899999999999999999999999999
Q ss_pred EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1055 VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
|||+++++|+|+|++++||+|++|.|..+|+||+|||||.|+.|.|++|+. .+...+..+.+.+
T Consensus 271 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 271 ITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7777777776654
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.4e-45 Score=476.86 Aligned_cols=345 Identities=21% Similarity=0.309 Sum_probs=282.8
Q ss_pred CCcccCcc--cCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 724 PDPVRNWK--EASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 724 p~p~~~f~--~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
+.....|. ++++++.+.++|++ +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------ 82 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------ 82 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------
Confidence 44455665 47788999999998 7999999999999999999999999999999999999999973
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHH------hcCCceeecCHHHHH------H
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVIATPGRLI------D 868 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l------~~~~~IlV~TP~rL~------d 868 (1832)
..+.+|||+|+++|+.|+...+..+ |+.+..+.|+....+....+ ...++|+|+||++|. +
T Consensus 83 ---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 83 ---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 1458999999999999999999987 78899999998876554322 346899999999874 2
Q ss_pred HHHccccccCCceeEEEecchhhhcCC--ChHHHHHH--HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec
Q psy6409 869 VLENRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKI--LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944 (1832)
Q Consensus 869 ~l~~~~~~l~~~~~lViDEaH~l~d~g--f~~~i~~I--l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT 944 (1832)
.+. ....+..+++|||||||++++|| |++.+..+ +... .+..++++||||
T Consensus 156 ~l~-~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~-------------------------~~~~~ii~lSAT 209 (591)
T 2v1x_A 156 RLE-KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQ-------------------------FPNASLIGLTAT 209 (591)
T ss_dssp HHH-HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHH-------------------------CTTSEEEEEESS
T ss_pred HHH-hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHh-------------------------CCCCcEEEEecC
Confidence 232 24467899999999999999998 88877552 1111 124789999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc--chhhHHHHHHHHHHc-CCCCCEEEEEcccchHHHHHHHHH
Q psy6409 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL--SEQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLE 1021 (1832)
Q Consensus 945 l~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~--~~~~k~~~L~~~l~~-~~~~~vIVFv~s~~~~~~l~~~L~ 1021 (1832)
+++.+...+..++..+..+.+..... ..++...+... ....+...|.+++.. ..+.++||||++++.|+.++..|.
T Consensus 210 ~~~~v~~~i~~~l~~~~~~~~~~~~~-r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 210 ATNHVLTDAQKILCIEKCFTFTASFN-RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp CCHHHHHHHHHHTTCCSCEEEECCCC-CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcEEEecCCC-CcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHH
Confidence 99998888777776654433332222 22333333322 234566777777764 366789999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEE
Q psy6409 1022 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1101 (1832)
Q Consensus 1022 ~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai 1101 (1832)
..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|+
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCchHHHH
Q psy6409 1102 SFCTKDDSHLFYD 1114 (1832)
Q Consensus 1102 ~~~~~~d~~~~~~ 1114 (1832)
+|+++.|...+..
T Consensus 369 ~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 369 LYYGFGDIFRISS 381 (591)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEEChHHHHHHHH
Confidence 9999887544433
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-44 Score=441.60 Aligned_cols=334 Identities=31% Similarity=0.549 Sum_probs=290.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
|++.+.++|+.+||..|+|+|.++++.+++++++++++|||||||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999998742 5679999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcC
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~ 1569 (1832)
++|+.|+++.+++++...+.++..++|+.....+...+. .++|+|+||++|.+.+....+.+.++++||+||||++.++
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 999999999999998888999999999988776655444 5899999999999999888888899999999999999999
Q ss_pred CChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcc
Q psy6409 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649 (1832)
Q Consensus 1570 gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~ 1649 (1832)
+|...+..++..++ ...+++++|||++..+......++..+..+... .....
T Consensus 145 ~~~~~~~~~~~~~~-------------------------~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 196 (337)
T 2z0m_A 145 GFIDDIKIILAQTS-------------------------NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLAN 196 (337)
T ss_dssp TCHHHHHHHHHHCT-------------------------TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGG
T ss_pred ccHHHHHHHHhhCC-------------------------cccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCC
Confidence 99999988887775 346789999999999998888888887665322 22334
Q ss_pred eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
+.+.+..+....+ .....+......++||||+++++++.++..|. .+..+||+++..+|..+++.|++|+++||
T Consensus 197 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 270 (337)
T 2z0m_A 197 VEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDML 270 (337)
T ss_dssp EEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred ceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEE
Confidence 5555555544332 23356666778899999999999999998876 68899999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|||+++++|||+|++++||+|++|.|..+|+||+||+||.|+.|.|++|+. .+...+..+.+.+
T Consensus 271 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 271 ITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred EEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 7777887776655
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-46 Score=482.61 Aligned_cols=380 Identities=28% Similarity=0.442 Sum_probs=262.6
Q ss_pred HHHHHHHhhcccee-cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHH
Q psy6409 705 RDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLA 781 (1832)
Q Consensus 705 ~~~~~~~~~~~i~~-~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla 781 (1832)
+++..+.+.+++.. .....|.++..|...++++.+++.+.+.||..|+++|.+||+.+++| +++|++||||||||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 95 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp --------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHH
Confidence 34444555554432 23334566777888889999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeec
Q psy6409 782 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861 (1832)
Q Consensus 782 ~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~ 861 (1832)
|++|++..+.. ...++++|||+|+++|+.|+.+.+.+++...++.+...+++...... ..+++|+|+
T Consensus 175 ~~~~il~~l~~---------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~ 241 (508)
T 3fho_A 175 FALTMLSRVDA---------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIG 241 (508)
T ss_dssp HHHHHHHHSCT---------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEE
T ss_pred HHHHHHHHHHh---------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEE
Confidence 99999976532 23467899999999999999999999988888877777766543322 337899999
Q ss_pred CHHHHHHHHHccccccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEE
Q psy6409 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940 (1832)
Q Consensus 862 TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~ 940 (1832)
||++|.+.+.+..+.+..+++|||||||++.+ .++...+..++..++ ...|+++
T Consensus 242 T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~ 296 (508)
T 3fho_A 242 TPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP-------------------------RNTQIVL 296 (508)
T ss_dssp CHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC-------------------------TTCEEEE
T ss_pred CHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC-------------------------cCCeEEE
Confidence 99999999998888899999999999999988 678888888888774 2478999
Q ss_pred EEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHH
Q psy6409 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKG 1019 (1832)
Q Consensus 941 ~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~-~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~ 1019 (1832)
+|||+++.+..+...++.++..+.+.........+.+.+..+ ....+...+..++.....+++||||+++..|+.++..
T Consensus 297 lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~ 376 (508)
T 3fho_A 297 FSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARR 376 (508)
T ss_dssp EESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHH
Confidence 999999999999999999888776665555555555555544 4566777788888777788999999999999999999
Q ss_pred HHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhccccc
Q psy6409 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGR 1093 (1832)
Q Consensus 1020 L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR 1093 (1832)
|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||+||+| .++.+|+||+|||||
T Consensus 377 L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR 456 (508)
T 3fho_A 377 MTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR 456 (508)
T ss_dssp HTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-
T ss_pred HHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 789999999999999
Q ss_pred CCCCcEEEEEecC-CCchHHHHHHHHHhcC
Q psy6409 1094 AGKEGLAVSFCTK-DDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1094 ~g~~G~ai~~~~~-~d~~~~~~l~~~l~~~ 1122 (1832)
.|..|.|++|+++ ++...+..+.+++..+
T Consensus 457 ~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 457 FGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp ----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred CCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 9999999999985 4667777887765443
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.5e-45 Score=467.94 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=281.9
Q ss_pred ccCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 727 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||||||++|++|++.. .
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------N 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------S
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------C
Confidence 4679999999999999998 89999999999999999999999999999999999999999731 3
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH---HH-hcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~---~l-~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
+.+|||+|+++|+.|+...+..+ |+.+..+.|+.+..+... .+ ...++|+|+||++|........+....+.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 57999999999999999999885 778888888887654432 22 23589999999999633222334457899
Q ss_pred eEEEecchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc--
Q psy6409 882 YIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-- 957 (1832)
Q Consensus 882 ~lViDEaH~l~d~g--f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l-- 957 (1832)
+|||||||++.+|| |.+.+..|.... ...+..+++++|||+++.+.......+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~-----------------------~~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLR-----------------------QRFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHH-----------------------HHCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHH-----------------------HhCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 99999999999988 888776543211 011246899999999987755333333
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 958 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~ 1037 (1832)
.+|. +.+.....+ ++.. .......+...+.+++....+.++||||++++.|+.+++.|...|+.+..+||+|++.
T Consensus 199 ~~~~-~~~~~~~r~--~l~~--~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 199 NDPL-IQISSFDRP--NIRY--MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 273 (523)
T ss_dssp CSCE-EEECCCCCT--TEEE--EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCCe-EEeCCCCCC--ceEE--EEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 3443 444433332 2322 2333456777888888877778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHH
Q psy6409 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1116 (1832)
+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 274 ~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp HHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988866555443
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3e-44 Score=466.52 Aligned_cols=346 Identities=20% Similarity=0.307 Sum_probs=282.4
Q ss_pred CCCcCCccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhccc
Q psy6409 1399 PDPVRNWKE--ASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475 (1832)
Q Consensus 1399 p~p~~~~~e--~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~ 1475 (1832)
+.....|.. +++++.+.+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------ 82 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------ 82 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------
Confidence 444556664 6788999999998 7999999999999999999999999999999999999999973
Q ss_pred ccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHh------hcCCcEEEeCHHHHHH---HHH
Q psy6409 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVIATPGRLID---VLE 1546 (1832)
Q Consensus 1476 ~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l------~~~~~IiVaTP~rl~~---~l~ 1546 (1832)
.++.+|||+|+++|+.|+.+.+.++ |+.+..+.|+.+.......+ ...++|+|+||++|.. ++.
T Consensus 83 ---~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~ 155 (591)
T 2v1x_A 83 ---SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMS 155 (591)
T ss_dssp ---SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHH
T ss_pred ---cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHH
Confidence 2458999999999999999999997 67888999998876543321 3468999999998742 221
Q ss_pred --ccccccCCceeEEEccchhhhcCC--ChHHHHHH---HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc
Q psy6409 1547 --NRYLVLNQCTYIVLDEADRMIDMG--FEPDVQKI---LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619 (1832)
Q Consensus 1547 --~~~~~l~~v~llViDEaH~ll~~g--f~~~l~~I---l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT 1619 (1832)
.....+.++++|||||||++.+|| |++.+..+ ...+ +..++++||||
T Consensus 156 ~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~--------------------------~~~~ii~lSAT 209 (591)
T 2v1x_A 156 RLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF--------------------------PNASLIGLTAT 209 (591)
T ss_dssp HHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC--------------------------TTSEEEEEESS
T ss_pred HHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC--------------------------CCCcEEEEecC
Confidence 124567899999999999999998 88776542 1222 34689999999
Q ss_pred CChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcc--hhhHHHHHHHHHHh-CCCCcEEEEECchhHHHHHHHHHH
Q psy6409 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS--EQDKRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLE 1696 (1832)
Q Consensus 1620 l~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~--~~~k~~~l~~~l~~-~~~~~vIVFv~s~~~a~~l~~~L~ 1696 (1832)
+++.+...+..++..+..+.+... ....++...+.... ...+...+..++.. ....++||||+|++.|+.++..|.
T Consensus 210 ~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 210 ATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp CCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHH
Confidence 999988877777765544333222 12223333333222 34556677777764 367899999999999999999999
Q ss_pred HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEE
Q psy6409 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776 (1832)
Q Consensus 1697 ~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai 1776 (1832)
..|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|+
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCChhHHHHH
Q psy6409 1777 SFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1777 ~~~~~~d~~~~~~l 1790 (1832)
+|+++.|...+..+
T Consensus 369 ~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 369 LYYGFGDIFRISSM 382 (591)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EEEChHHHHHHHHH
Confidence 99998776555443
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.4e-44 Score=460.83 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=281.2
Q ss_pred cCCcccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1402 VRNWKEASLPTEILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1402 ~~~~~e~~L~~~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+.+|++++|++.+.+.|++ +||..|+|+|.++|+.++.|+|++++||||||||+||++|++. ..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---------------~~ 65 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---------------LN 65 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---------------SS
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---------------hC
Confidence 3578999999999999998 8999999999999999999999999999999999999999973 13
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH---Hh-hcCCcEEEeCHHHHHHHHHccccccCCce
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF---RL-RLGCEIVIATPGRLIDVLENRYLVLNQCT 1556 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~---~l-~~~~~IiVaTP~rl~~~l~~~~~~l~~v~ 1556 (1832)
..+|||+|+++|+.|+.+.+..+ |+.+..+.|+.+...... .+ ...++|+|+||++|........+...+++
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 57999999999999999999886 677888888877654322 22 34589999999999633222334457899
Q ss_pred eEEEccchhhhcCC--ChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc--
Q psy6409 1557 YIVLDEADRMIDMG--FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL-- 1632 (1832)
Q Consensus 1557 llViDEaH~ll~~g--f~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l-- 1632 (1832)
+|||||||++.++| |++.+..+..... ..+..+++++|||+++.+...+..++
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~-----------------------~~~~~~~i~lSAT~~~~~~~~i~~~l~~ 198 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQ-----------------------RFPTLPFMALTATADDTTRQDIVRLLGL 198 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHH-----------------------HCTTSCEEEEESCCCHHHHHHHHHHHTC
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHH-----------------------hCCCCCEEEEeCCCCHHHHHHHHHHhCC
Confidence 99999999999987 7777665422110 11236799999999988765444333
Q ss_pred CCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1633 RRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1633 ~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
.+| .+.+.....+ ++. +.......+...+..++......++||||+|++.|+.++..|...|+.+..+||+|++.
T Consensus 199 ~~~-~~~~~~~~r~--~l~--~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~ 273 (523)
T 1oyw_A 199 NDP-LIQISSFDRP--NIR--YMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 273 (523)
T ss_dssp CSC-EEEECCCCCT--TEE--EEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred CCC-eEEeCCCCCC--ceE--EEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 344 3444443333 232 22333456677788888877788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1713 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.|+++|+||+|||||.|..|.|++|+++.|...+..+.
T Consensus 274 ~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 274 VRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp HHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988766555443
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-45 Score=472.95 Aligned_cols=385 Identities=28% Similarity=0.447 Sum_probs=262.3
Q ss_pred HHHHHHhcccce-ecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHH
Q psy6409 1381 DWRIFREDYSIT-IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1381 ~~~~~~~~~~i~-~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~ 1457 (1832)
++..+.+.+++. +.....|.++..|...++++.+++.+...||..|+|+|.++++.++.+ +++|++||||||||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 96 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp -------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 344444444433 222334555666777789999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeC
Q psy6409 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 1537 (1832)
Q Consensus 1458 ~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaT 1537 (1832)
++|++..+.. ...++++|||+|+++|+.|+++.+++++...++.+....++...... ..+++|+|+|
T Consensus 176 ~~~il~~l~~---------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~T 242 (508)
T 3fho_A 176 ALTMLSRVDA---------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KIDAQIVIGT 242 (508)
T ss_dssp HHHHHHHSCT---------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEEC
T ss_pred HHHHHHHHHh---------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cCCCCEEEEC
Confidence 9999976532 23467899999999999999999999988777777766666543322 3368999999
Q ss_pred HHHHHHHHHccccccCCceeEEEccchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEE
Q psy6409 1538 PGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616 (1832)
Q Consensus 1538 P~rl~~~l~~~~~~l~~v~llViDEaH~ll~-~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~ 1616 (1832)
|+++.+.+....+.+.++++|||||||++.+ .++...+..++..++ ...|++++
T Consensus 243 ~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~l 297 (508)
T 3fho_A 243 PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP-------------------------RNTQIVLF 297 (508)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC-------------------------TTCEEEEE
T ss_pred HHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC-------------------------cCCeEEEE
Confidence 9999999988888899999999999999987 678888888888775 34789999
Q ss_pred EccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-chhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHH
Q psy6409 1617 TATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 1695 (1832)
Q Consensus 1617 SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~-~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L 1695 (1832)
|||+++.+..+...++..+..+.+.........+.+.+..+ ....+...+..++......++||||+++.+|+.++..|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99999999999999998887776655554445555555444 45567777888887777889999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccC
Q psy6409 1696 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRA 1769 (1832)
Q Consensus 1696 ~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~ 1769 (1832)
...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++||++++| .++.+|+||+|||||.
T Consensus 378 ~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~ 457 (508)
T 3fho_A 378 TADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF 457 (508)
T ss_dssp TTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC--
T ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred CCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCCh
Q psy6409 1770 GKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPP 1804 (1832)
Q Consensus 1770 g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~ 1804 (1832)
|+.|.|++|+.+. +...+..+.+++... ...++.
T Consensus 458 g~~g~~i~l~~~~~~~~~~~~i~~~~~~~-i~~l~~ 492 (508)
T 3fho_A 458 GRVGVSINFVHDKKSWEEMNAIQEYFQRP-ITRVPT 492 (508)
T ss_dssp ---CEEEEEECTTTSSSSHHHHHHHSCCC-CC----
T ss_pred CCCcEEEEEEeChHHHHHHHHHHHHHCCC-cccCCC
Confidence 9999999999854 667777777766433 455554
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.7e-44 Score=451.19 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=270.3
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 738 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 738 ~l~~~l~~-~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.+.+.+++ +|| +|+|+|.++++.++.|+|+|++||||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 44555555 576 89999999999999999999999999999999999988654 34789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcCCch---HHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 817 La~Qi~~~~~~~~~~~~i~v~~~~Gg~~~---~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
||.|+++.+.+++. .++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+..+++|||||||++.
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 99999999999988 89999999999987 5556666666 99999999999888864 567899999999998665
Q ss_pred c-----------CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHH-HHHHHhcC
Q psy6409 893 D-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLR 958 (1832)
Q Consensus 893 d-----------~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~-~~~~~~l~ 958 (1832)
+ +||.+. +..++..++...... ........|++++||| +|..+. .+...++.
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~--------------~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC--------------CCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhh--------------hcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 4 788888 777777653100000 0011145799999999 665544 33333333
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEE-EEcCCCCHH
Q psy6409 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQE 1037 (1832)
Q Consensus 959 ~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~-~lhg~~~~~ 1037 (1832)
+.+.........+.+.+..+ .+...+.+++.. .+.++||||+++..|+.++..|...|+.+. .+||.
T Consensus 219 ----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~---- 286 (414)
T 3oiy_A 219 ----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF---- 286 (414)
T ss_dssp ----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----
T ss_pred ----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----
Confidence 22223334445566666555 345556666665 447899999999999999999999999998 89984
Q ss_pred HHHHHHHHHhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCC--CCHhHHHHHhcccccCC----CCcEEEEEecC
Q psy6409 1038 QRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMA--KSIEDYTHRIGRTGRAG----KEGLAVSFCTK 1106 (1832)
Q Consensus 1038 ~R~~il~~F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p--~s~~~yvQr~GRaGR~g----~~G~ai~~~~~ 1106 (1832)
+|. ++.|++|+++|||| |+++++|||+|+ |++||+||+| .+..+|+||+|||||.| ..|.|++|+
T Consensus 287 ~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-- 362 (414)
T 3oiy_A 287 EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 362 (414)
T ss_dssp HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--
T ss_pred chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--
Confidence 444 99999999999999 999999999999 9999999999 99999999999999988 479999999
Q ss_pred CCchHHHHHHHHHh
Q psy6409 1107 DDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1107 ~d~~~~~~l~~~l~ 1120 (1832)
+|...+..+.+.+.
T Consensus 363 ~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 363 EDEEIFESLKTRLL 376 (414)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 67778888888776
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.3e-43 Score=469.14 Aligned_cols=333 Identities=22% Similarity=0.326 Sum_probs=269.8
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
.+|++++||+++.+.+++.||..|+|+|.++++. +..++|+|++||||||||++|.+|++..+.. .+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----------NGG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----------CCC
Confidence 4699999999999999999999999999999999 7789999999999999999999999987632 267
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+++|++|+++||.|++..++.+ ..+|++++.++|+....... ...++|+|+|||+|..++.+....++++++||||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 9999999999999999999654 45689999999998765542 2379999999999999888776668999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.+.++++.++.++.+++ ..|++++|||+++ ...++..+ ..+. +.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~--------------------------~~~ii~lSATl~n-~~~~~~~l-~~~~-~~-- 201 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK--------------------------RRNLLALSATISN-YKQIAKWL-GAEP-VA-- 201 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH--------------------------TSEEEEEESCCTT-HHHHHHHH-TCEE-EE--
T ss_pred chhhcCCcccchHHHHHHHhcc--------------------------cCcEEEEcCCCCC-HHHHHHHh-CCCc-cC--
Confidence 9999998899999999887763 3799999999986 45566544 3221 11
Q ss_pred ccCCCCcceEEE------------EEEcc--------hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcC--
Q psy6409 967 SVGKPTERIEQI------------VYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-- 1024 (1832)
Q Consensus 967 ~~~~~~~~i~q~------------~~~~~--------~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g-- 1024 (1832)
....+.. +... +.+.. .......+.+.+. .++++||||++++.|+.++..|....
T Consensus 202 ~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~ 278 (715)
T 2va8_A 202 TNWRPVP-LIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNF 278 (715)
T ss_dssp CCCCSSC-EEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCC-ceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhh
Confidence 1111111 1111 11111 2344555555554 56799999999999999999998642
Q ss_pred ----------------------------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcC
Q psy6409 1025 ----------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070 (1832)
Q Consensus 1025 ----------------------------------~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~ 1070 (1832)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~ 358 (715)
T 2va8_A 279 VSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPART 358 (715)
T ss_dssp SCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSE
T ss_pred ccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceE
Confidence 3599999999999999999999999999999999999999999999
Q ss_pred EEEE----cC-------CCCCHhHHHHHhcccccCCC--CcEEEEEecCCCc
Q psy6409 1071 MVIN----YD-------MAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDS 1109 (1832)
Q Consensus 1071 ~VI~----~d-------~p~s~~~yvQr~GRaGR~g~--~G~ai~~~~~~d~ 1109 (1832)
+||+ || .|.|..+|+||+|||||.|. .|.|++++++.+.
T Consensus 359 ~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 359 VIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp EEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred EEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 9999 99 89999999999999999984 6999999987763
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-44 Score=483.63 Aligned_cols=461 Identities=18% Similarity=0.212 Sum_probs=323.2
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 729 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 729 ~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+|++++ ||+.+.+.+++.||..|+|+|.++++.+++|+|+|++||||||||++|.+|++..+. .++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~------------~~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI------------KGG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH------------TTC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH------------hCC
Confidence 578888 999999999999999999999999999999999999999999999999999997653 256
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++|+++||.|+++.++.+ ..+|++++.++|+....... ...++|+|+|||+|..++.+....++++++||||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred cEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 8999999999999999999654 45699999999988765431 2379999999999998888876668999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.++++++.+..++..+.. .....|++++|||+++ ...++.. +..+. +..
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~----------------------~~~~~~ii~lSATl~n-~~~~~~~-l~~~~-~~~- 199 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRR----------------------MNKALRVIGLSATAPN-VTEIAEW-LDADY-YVS- 199 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHH----------------------HCTTCEEEEEECCCTT-HHHHHHH-TTCEE-EEC-
T ss_pred eeeecCCCCcccHHHHHHHHHHh----------------------cCcCceEEEECCCcCC-HHHHHHH-hCCCc-ccC-
Confidence 99999999999999998876620 1235899999999986 5556654 43322 111
Q ss_pred ccCCCCcceEEEE------EEcchh-------hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc----------
Q psy6409 967 SVGKPTERIEQIV------YILSEQ-------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1023 (1832)
Q Consensus 967 ~~~~~~~~i~q~~------~~~~~~-------~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~---------- 1023 (1832)
...+. .+...+ ...... .....+.+.+. .++++||||++++.|+.++..|...
T Consensus 200 -~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 275 (702)
T 2p6r_A 200 -DWRPV-PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL 275 (702)
T ss_dssp -CCCSS-CEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred -CCCCc-cceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHH
Confidence 11111 111111 111111 14555555554 5678999999999999999988753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC---
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1076 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d--- 1076 (1832)
+.++.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 246889999999999999999999999999999999999999999999998 77
Q ss_pred CCCCHhHHHHHhcccccCC--CCcEEEEEecCCCchHHH-------------------HHHHHHhcCCcccccccccccc
Q psy6409 1077 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFY-------------------DLKQMMISSPVTGRAGKEGLAV 1135 (1832)
Q Consensus 1077 ~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d~~~~~-------------------~l~~~l~~~~~~~~~~~~~~~v 1135 (1832)
.|.|..+|+||+|||||.| ..|.|++++++.+...+. .+.+++++.+..|++.+..+..
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 435 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELE 435 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999998 469999999987622111 2233334444444444444555
Q ss_pred cccccCCchhHHHHHHhhhcCCCCCCchhhcCCCcccCCCCcccccCCccccCCChhhhccccccccccccccCcccccc
Q psy6409 1136 SFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQ 1215 (1832)
Q Consensus 1136 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1215 (1832)
.|+..+....... . .....+..........|.+... .....+.+|+..+.+
T Consensus 436 ~~l~~t~~~~~~~-------~---~~~~~~~~al~~L~~~g~i~~~-------------------~~~~~t~lG~~~~~~ 486 (702)
T 2p6r_A 436 DFFADTFFFKQNE-------I---SLSYELERVVRQLENWGMVVEA-------------------AHLAPTKLGSLVSRL 486 (702)
T ss_dssp HHHHTSTTHHHHC-------C---CCHHHHHHHHHHHHHTTSEEES-------------------SSEEECHHHHHHHHT
T ss_pred HHHHhhhHHHhhh-------H---HHHHHHHHHHHHHHHCcCeeEC-------------------CeeccChHHHHHHHH
Confidence 5543222111000 0 0000000000000000000000 112345567777777
Q ss_pred cccCccc-ccccCCCcc-ccchhHhhhhccCchhhhhhcccchHHHHHHHH
Q psy6409 1216 CEAQSSR-FSACSLPRS-HKSSSLLSRYSEQDPEEKELNKDKEREGEAIKE 1264 (1832)
Q Consensus 1216 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~ 1264 (1832)
+..+.+. ......... .+...++..++...+|..+.+|..|+++..+..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~ 537 (702)
T 2p6r_A 487 YIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAF 537 (702)
T ss_dssp TCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHH
Confidence 7665542 111111111 556688888999999988888877666665543
No 40
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5e-43 Score=440.91 Aligned_cols=337 Identities=20% Similarity=0.310 Sum_probs=267.7
Q ss_pred HHHHHHHH-cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1413 EILEIIEK-IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1413 ~ll~~l~~-~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.+.+.+++ +|| .|+|+|.++++.++.|+|++++||||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 34455554 577 89999999999999999999999999999999999988654 24788999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCcch---HHHHHHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1492 La~Qi~~~~~~~~~~~g~~v~~l~gg~~~---~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
|+.|+++.+++++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhh
Confidence 99999999999988 89999999999987 4555566666 99999999999888764 667899999999998765
Q ss_pred c-----------CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc-CChHHH-HHHHHhcC
Q psy6409 1568 D-----------MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLR 1633 (1832)
Q Consensus 1568 ~-----------~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT-l~~~~~-~~~~~~l~ 1633 (1832)
+ ++|.+. +..++..++...... ........|++++||| +|..+. .+...++.
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~--------------~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCC--------------CCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccchhhh--------------hcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 4 677777 777776653100000 0001145799999999 565543 23333332
Q ss_pred CCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEE-EEcCCCCHH
Q psy6409 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQE 1712 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~-~lHg~ls~~ 1712 (1832)
+.+.........+.+.+... .+...+.+++.. .+.++||||+++.+|+.++..|...|+.+. .+||.
T Consensus 219 ----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~---- 286 (414)
T 3oiy_A 219 ----FTVGRLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF---- 286 (414)
T ss_dssp ----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----
T ss_pred ----cCcCccccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----
Confidence 11222333445566666554 455666777766 348999999999999999999999999998 89984
Q ss_pred HHHHHHHHhhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCC--CCHHHHHHHhcccccCC----CccEEEEEeeC
Q psy6409 1713 QRELALNSLKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMA--KSIEDYTHRIGRTGRAG----KEGLAVSFCTK 1781 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P--~s~~~yiQRiGRaGR~g----~~G~ai~~~~~ 1781 (1832)
+|. ++.|++|+++|||| |+++++|||+|+ |++||+||+| .+..+|+||+|||||.| ..|.+++|+
T Consensus 287 ~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~-- 362 (414)
T 3oiy_A 287 EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE-- 362 (414)
T ss_dssp HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--
T ss_pred chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--
Confidence 444 99999999999999 999999999999 9999999999 99999999999999987 589999999
Q ss_pred CChhHHHHHHHHhh
Q psy6409 1782 DDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1782 ~d~~~~~~l~~~l~ 1795 (1832)
.|...+..+.+.+.
T Consensus 363 ~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 363 EDEEIFESLKTRLL 376 (414)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc
Confidence 67777777777665
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.6e-42 Score=447.03 Aligned_cols=384 Identities=20% Similarity=0.272 Sum_probs=287.5
Q ss_pred hhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHH-----HHcCCCCCcHHHHHHHHHHHcCCcEEE
Q psy6409 696 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII-----EKIGYAEPTPIQRQAIPIGLQNRDIIG 770 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l-----~~~g~~~pt~iQ~~ai~~il~grdvIv 770 (1832)
++.+..+++++++.....|...+..+. +++++ ||+ .+..+ ..+|| .|||+|..++|.+++|+ |+
T Consensus 33 ~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~~-l~e-a~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Ia 101 (844)
T 1tf5_A 33 RGDYENLSDDALKHKTIEFKERLEKGA------TTDDL-LVE-AFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IA 101 (844)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHHHTTC------CHHHH-HHH-HHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EE
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHHH-HHH-HHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EE
Confidence 345666777777766666655443322 12211 222 22211 24899 99999999999999999 99
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~ 850 (1832)
.|+||+|||++|+||++.... .|+.++||+||++||.|+++++..++..+|+++++++||.+...+.
T Consensus 102 ea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~- 168 (844)
T 1tf5_A 102 EMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKR- 168 (844)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHH-
T ss_pred EccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH-
Confidence 999999999999999985421 2567999999999999999999999999999999999999865543
Q ss_pred HHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 851 RLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 907 (1832)
Q Consensus 851 ~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~-d~g---------------f~~~i~~Il~~l 907 (1832)
...+++|+|||||+| .|+|... .+.+..+.++||||||+|+ |++ |.+.+..|+..+
T Consensus 169 -~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l 247 (844)
T 1tf5_A 169 -EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL 247 (844)
T ss_dssp -HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTC
T ss_pred -HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhC
Confidence 345799999999999 6776543 3578899999999999998 775 567888999888
Q ss_pred CC---------C-CC------------------CCCCchh---HHHHHHHHh-h--------------------------
Q psy6409 908 PV---------T-NL------------------KPDTEDA---EDENKLLAN-Y-------------------------- 929 (1832)
Q Consensus 908 ~~---------~-~~------------------~~~~~~~---~~~~~ll~~-~-------------------------- 929 (1832)
+. . +. ....... ......+.. .
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 62 0 00 0000000 001111100 0
Q ss_pred -------------------c---------------cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcce
Q psy6409 930 -------------------N---------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 975 (1832)
Q Consensus 930 -------------------~---------------~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i 975 (1832)
. -...+..+.++|+|.......|...|.-+ .+.+ +...+....
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~I-Ptn~p~~r~ 404 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTI-PTNRPVVRD 404 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEEC-CCSSCCCCE
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEe-cCCCCcccc
Confidence 0 00113456788888877777776666433 2223 233333333
Q ss_pred EE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 976 EQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 976 ~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+ .+.++....|...|...+.. ..+.++||||+|++.++.|+..|...|+++.++||++.+.+|..+.+.|+.| .
T Consensus 405 d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~ 482 (844)
T 1tf5_A 405 DRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A 482 (844)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C
T ss_pred cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e
Confidence 32 24556788899888887764 2467899999999999999999999999999999999988888777777766 6
Q ss_pred EEEecccccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1053 ILVATDVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
||||||+|+||+||+ ++.+||||++|.|...|+||+|||||+|.+|.+++|++.+|.
T Consensus 483 VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999 888999999999999999999999999999999999998874
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.2e-43 Score=470.34 Aligned_cols=332 Identities=23% Similarity=0.293 Sum_probs=272.6
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
+|++++||+++.+.+++.||..|+|+|.++++. +..|+|+|++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----------QGGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----------HCSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCCE
Confidence 589999999999999999999999999999998 7889999999999999999999999987642 2579
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEec
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDE 887 (1832)
+||++|+++||.|+++.++++. .+|++++.++|+....... ...++|+|+|||+|..++.+....++++++|||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEEC
Confidence 9999999999999999997654 4589999999987754432 24799999999999888887766689999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 888 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967 (1832)
Q Consensus 888 aH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~ 967 (1832)
||++.++++++.+..++.+++ ...|++++|||+++ ...++..+ ..+. + ..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~-------------------------~~~~ii~lSATl~n-~~~~~~~l-~~~~-~--~~ 196 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHML-------------------------GKAQIIGLSATIGN-PEELAEWL-NAEL-I--VS 196 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHB-------------------------TTBEEEEEECCCSC-HHHHHHHT-TEEE-E--EC
T ss_pred CcccCCCcccHHHHHHHHHhh-------------------------cCCeEEEEcCCcCC-HHHHHHHh-CCcc-c--CC
Confidence 999999999999999988774 14799999999987 45565543 3211 1 11
Q ss_pred cCCCCcceEEEE------EEcc-----hhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc-------------
Q psy6409 968 VGKPTERIEQIV------YILS-----EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1023 (1832)
Q Consensus 968 ~~~~~~~i~q~~------~~~~-----~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~------------- 1023 (1832)
...+. .+...+ .... ...+...+.+.+. .++++||||++++.|+.++..|...
T Consensus 197 ~~rp~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 273 (720)
T 2zj8_A 197 DWRPV-KLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL 273 (720)
T ss_dssp CCCSS-EEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CCCCC-cceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 11111 111111 1111 2334455555554 4578999999999999999998753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE----cC---
Q psy6409 1024 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1076 (1832)
Q Consensus 1024 --------------------g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d--- 1076 (1832)
..++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 274 ~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g 353 (720)
T 2zj8_A 274 NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFG 353 (720)
T ss_dssp HHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSS
T ss_pred HHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCC
Confidence 135999999999999999999999999999999999999999999999998 77
Q ss_pred -CCCCHhHHHHHhcccccCC--CCcEEEEEecCCC
Q psy6409 1077 -MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDD 1108 (1832)
Q Consensus 1077 -~p~s~~~yvQr~GRaGR~g--~~G~ai~~~~~~d 1108 (1832)
.|.+..+|+||+|||||.| ..|.|++++++.+
T Consensus 354 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 354 MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 5899999999999999998 4699999999887
No 43
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-43 Score=480.14 Aligned_cols=332 Identities=19% Similarity=0.228 Sum_probs=270.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
...|..+++++.+...+...++..|+|+|.+||+.++.|+|+|++||||||||++|++|++..+. .++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~ 228 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQ 228 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTC
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCC
Confidence 34677778888777777777888999999999999999999999999999999999999997752 367
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
++||++||++||.|++..+.+++. .++.++|+.+. ..+++|+|+|||+|.+++.++...+.++++||||
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 899999999999999999999754 57778888773 3468999999999999998888788999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH--HHHHHhcCCCcEEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVY 964 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~--~~~~~~l~~p~~v~ 964 (1832)
|||+|.+++|+..+..++..++ ...|+++||||+|+..+ .+...+...|..+.
T Consensus 298 EaH~l~d~~rg~~~e~ii~~l~-------------------------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi 352 (1108)
T 3l9o_A 298 EVHYMRDKERGVVWEETIILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIV 352 (1108)
T ss_dssp TGGGTTSHHHHHHHHHHHHHSC-------------------------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEE
T ss_pred hhhhccccchHHHHHHHHHhcC-------------------------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEE
Confidence 9999999999999999998875 34799999999987533 45555566666555
Q ss_pred EcccCCCCcceEEEEEEcc---------h----------------------------------------------hhHHH
Q psy6409 965 IGSVGKPTERIEQIVYILS---------E----------------------------------------------QDKRK 989 (1832)
Q Consensus 965 ~~~~~~~~~~i~q~~~~~~---------~----------------------------------------------~~k~~ 989 (1832)
....... .+.+.++... . ..+..
T Consensus 353 ~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (1108)
T 3l9o_A 353 YTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY 430 (1108)
T ss_dssp EECCCSS--CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHH
T ss_pred ecCCCcc--cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHH
Confidence 4433221 1222221100 0 23344
Q ss_pred HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCc---------------------------------------EEEE
Q psy6409 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYN---------------------------------------ACTL 1030 (1832)
Q Consensus 990 ~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~---------------------------------------v~~l 1030 (1832)
.++..+......++||||+++..|+.++..|...++. +.++
T Consensus 431 ~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~ 510 (1108)
T 3l9o_A 431 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 510 (1108)
T ss_dssp HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeee
Confidence 4555666666779999999999999999988543322 8999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC--------CCCHhHHHHHhcccccCC--CCcEE
Q psy6409 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAG--KEGLA 1100 (1832)
Q Consensus 1031 hg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~--------p~s~~~yvQr~GRaGR~g--~~G~a 1100 (1832)
||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|
T Consensus 511 Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ 590 (1108)
T 3l9o_A 511 HSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIV 590 (1108)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999997766 448889999999999999 56999
Q ss_pred EEEecCCC
Q psy6409 1101 VSFCTKDD 1108 (1832)
Q Consensus 1101 i~~~~~~d 1108 (1832)
++++++..
T Consensus 591 ill~~~~~ 598 (1108)
T 3l9o_A 591 IMMIDEKM 598 (1108)
T ss_dssp EEEECCCC
T ss_pred EEEecCCc
Confidence 99988763
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-41 Score=452.97 Aligned_cols=369 Identities=21% Similarity=0.312 Sum_probs=282.4
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
.+|++++|++.+.+.++..||..|+|+|.++++. +.++++++++||||||||++|.+|++..+.. .+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----------NGG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------SCS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----------CCC
Confidence 4699999999999999999999999999999999 7789999999999999999999999987643 267
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++||++|+++||.|++..++.+. .+|+++..++|+........ .+++|+|+|||+|..++.+....++++++||||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~~---~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 152 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWL---KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLD 152 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGGG---GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEEC
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhhc---CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEe
Confidence 89999999999999999996553 45889999999887655422 378999999999999998877778999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.+.+++..++.++..++ ..|++++|||+++. ..+.. |+..+. + .
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~--------------------------~~~ii~lSATl~n~-~~~~~-~l~~~~-~--~ 201 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK--------------------------RRNLLALSATISNY-KQIAK-WLGAEP-V--A 201 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH--------------------------TSEEEEEESCCTTH-HHHHH-HHTCEE-E--E
T ss_pred chhhcCCcccchHHHHHHHhcc--------------------------cCcEEEEcCCCCCH-HHHHH-HhCCCc-c--C
Confidence 9999988889999988887663 36899999999864 44444 443221 1 1
Q ss_pred ccCCCCcceEE-----------EEEEcc--------hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcC---
Q psy6409 1642 SVGKPTERIEQ-----------IVYILS--------EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG--- 1699 (1832)
Q Consensus 1642 ~~~~~~~~i~q-----------~~~~~~--------~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~--- 1699 (1832)
....+...... .+.... .......+.+.+. ..+++||||++++.|+.++..|....
T Consensus 202 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~ 279 (715)
T 2va8_A 202 TNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFV 279 (715)
T ss_dssp CCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhc
Confidence 11111111111 111111 1333444444443 56899999999999999999998642
Q ss_pred ---------------------------------CcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE
Q psy6409 1700 ---------------------------------YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746 (1832)
Q Consensus 1700 ---------------------------------~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~ 1746 (1832)
.++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~ 359 (715)
T 2va8_A 280 SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTV 359 (715)
T ss_dssp CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEE
T ss_pred cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEE
Confidence 36999999999999999999999999999999999999999999999
Q ss_pred EEE----eC-------CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhhcCC---CCCCCh--hhcC
Q psy6409 1747 VIN----YD-------MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMISSP---VSTCPP--ELLN 1808 (1832)
Q Consensus 1747 VI~----~d-------~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~~~~---~~~~~~--~L~~ 1808 (1832)
||+ || .|.|..+|+||+|||||.| ..|.|++++++.+. +...+.+++.... .+.+.+ .|.+
T Consensus 360 VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~s~l~~~~~l~~ 438 (715)
T 2va8_A 360 IIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIESKLGSERAFYT 438 (715)
T ss_dssp EECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCCCSCCSHHHHHH
T ss_pred EEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCceecCCchhHHHH
Confidence 999 99 8999999999999999987 47999999987763 1111222332211 023322 3445
Q ss_pred CCCCcCCCCccc
Q psy6409 1809 HPDAQHKPGTVM 1820 (1832)
Q Consensus 1809 h~~a~~~~gti~ 1820 (1832)
|..+.+..|++.
T Consensus 439 ~~l~~~~~g~~~ 450 (715)
T 2va8_A 439 FLLGILSAEGNL 450 (715)
T ss_dssp HHHHHHHHHCSE
T ss_pred HHHHHHhccccC
Confidence 777777777664
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-40 Score=429.47 Aligned_cols=384 Identities=19% Similarity=0.263 Sum_probs=288.0
Q ss_pred hhhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHH-----HcCCCCCcHHHHHHHHHHhcCCcEEE
Q psy6409 1371 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIE-----KIGYAEPTPIQRQAIPIGLQNRDIIG 1445 (1832)
Q Consensus 1371 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~-----~~g~~~ptpiQ~~ai~~il~g~dvii 1445 (1832)
+..+..++++++......+...+..+. ++++ +-+..+..+. .+|| .|+|+|..++|.++.|+ |+
T Consensus 33 ~~~~~~lsd~el~~~t~~~~~~~~~g~------~ld~--~l~ea~a~vrea~~r~lG~-~pt~VQ~~~ip~ll~G~--Ia 101 (844)
T 1tf5_A 33 RGDYENLSDDALKHKTIEFKERLEKGA------TTDD--LLVEAFAVVREASRRVTGM-FPFKVQLMGGVALHDGN--IA 101 (844)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTS--EE
T ss_pred hHHHHhCCHHHHHHHHHHHHHHHhcCC------ChHH--HHHHHHHHHHHHHHHHcCC-CCcHHHHHhhHHHhCCC--EE
Confidence 345666777777666655555443221 1111 1122222222 4899 99999999999999999 99
Q ss_pred EcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHH
Q psy6409 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525 (1832)
Q Consensus 1446 ~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~ 1525 (1832)
.|+||+|||++|.+|++.... .++.|+||+||++||.|++.++..++..+|+++.+++||.+...+..
T Consensus 102 ea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~ 169 (844)
T 1tf5_A 102 EMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE 169 (844)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH
T ss_pred EccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 999999999999999984321 35679999999999999999999999999999999999998765433
Q ss_pred HhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 1526 RLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 1582 (1832)
Q Consensus 1526 ~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~g---------------f~~~l~~Il~~l 1582 (1832)
..+++|+||||++| .+++..+ .+.+..+.++||||||+|+ +.+ |.+.+..|+..+
T Consensus 170 --~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l 247 (844)
T 1tf5_A 170 --AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTL 247 (844)
T ss_dssp --HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTC
T ss_pred --hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhC
Confidence 34799999999999 7777653 3567899999999999998 664 567888899888
Q ss_pred CC----------CCCC-----------------CCCchhhh-HHHHH----hh-h-c-----------------------
Q psy6409 1583 PV----------TNLK-----------------PDTEDAED-ENKLL----AN-Y-N----------------------- 1605 (1832)
Q Consensus 1583 ~~----------~~~~-----------------~~~~~~~~-~~~l~----~~-~-~----------------------- 1605 (1832)
+. .... --+..... ...+. +. + .
T Consensus 248 ~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m 327 (844)
T 1tf5_A 248 KAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLM 327 (844)
T ss_dssp CSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBC
T ss_pred cccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeeccccccc
Confidence 63 0000 00000000 00110 00 0 0
Q ss_pred -----------------------------------cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcce
Q psy6409 1606 -----------------------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 1650 (1832)
Q Consensus 1606 -----------------------------------~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i 1650 (1832)
....+..+.++|+|.......+...|.-+ .+.+ +...+...+
T Consensus 328 ~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--vv~I-Ptn~p~~r~ 404 (844)
T 1tf5_A 328 KGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--VVTI-PTNRPVVRD 404 (844)
T ss_dssp TTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--EEEC-CCSSCCCCE
T ss_pred CCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--eEEe-cCCCCcccc
Confidence 00112356789999988777777766443 2333 444444444
Q ss_pred EE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1651 EQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1651 ~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+ .+.++....|...++..+.. ....|+||||+|+..++.|+..|...|+++..+||++.+.+|..+.+.|+.| .
T Consensus 405 d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~ 482 (844)
T 1tf5_A 405 DRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--A 482 (844)
T ss_dssp ECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--C
T ss_pred cCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--e
Confidence 32 24456778898888887764 2567899999999999999999999999999999999988888777777766 6
Q ss_pred EEEEcccccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1728 ILVATDVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1728 VLVATdvl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|||||++++||+||+ ++.+||||++|.|...|+||+|||||+|.+|.+++|++..|.
T Consensus 483 VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999999999 788999999999999999999999999999999999998874
No 46
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.1e-41 Score=454.71 Aligned_cols=366 Identities=22% Similarity=0.268 Sum_probs=288.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1404 ~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
+|++++|++.+.+.++..||..|+|+|.++++. +..++|++++||||||||++|.+|++..+.. .+.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-----------QGGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-----------HCSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCCE
Confidence 488999999999999999999999999999998 8899999999999999999999999987643 2678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++|+++||.|+++.++++. .+|+++..++|+....... ...++|+|+||++|..++.+....++++++|||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEEC
Confidence 9999999999999999997664 3589999999987765432 23689999999999999988777789999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcc
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~ 1642 (1832)
||++.+++++..+..++..++ ...|++++|||+++. ..+.. |+..+. +..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~-------------------------~~~~ii~lSATl~n~-~~~~~-~l~~~~---~~~ 196 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHML-------------------------GKAQIIGLSATIGNP-EELAE-WLNAEL---IVS 196 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHB-------------------------TTBEEEEEECCCSCH-HHHHH-HTTEEE---EEC
T ss_pred CcccCCCcccHHHHHHHHHhh-------------------------cCCeEEEEcCCcCCH-HHHHH-HhCCcc---cCC
Confidence 999998899999999988774 147899999999874 44444 443211 111
Q ss_pred cCCCCcceEEEE------EEcc-----hhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc-------------
Q psy6409 1643 VGKPTERIEQIV------YILS-----EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------- 1698 (1832)
Q Consensus 1643 ~~~~~~~i~q~~------~~~~-----~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~------------- 1698 (1832)
...+.. +...+ .... .......+.+.+. ..+++||||++++.|+.++..|...
T Consensus 197 ~~rp~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 273 (720)
T 2zj8_A 197 DWRPVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRAL 273 (720)
T ss_dssp CCCSSE-EEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHH
T ss_pred CCCCCc-ceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 112221 11111 1111 1233444555554 4589999999999999999998753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC---
Q psy6409 1699 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1751 (1832)
Q Consensus 1699 --------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d--- 1751 (1832)
..++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 274 ~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g 353 (720)
T 2zj8_A 274 NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFG 353 (720)
T ss_dssp HHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSS
T ss_pred HHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCC
Confidence 235999999999999999999999999999999999999999999999999 77
Q ss_pred -CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhh----cCCCCCCCh--hhcCCCCCcCCCCccc
Q psy6409 1752 -MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMI----SSPVSTCPP--ELLNHPDAQHKPGTVM 1820 (1832)
Q Consensus 1752 -~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~----~~~~~~~~~--~L~~h~~a~~~~gti~ 1820 (1832)
.|.+..+|+||+|||||.| ..|.|++++++.+...+ +.+++. +.+ +.+.+ .|.+|..+.+..|++.
T Consensus 354 ~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~--~~~~~~~~~~~i~-s~l~~~~~l~~~ll~~i~~~~~~ 428 (720)
T 2zj8_A 354 MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV--MNHYIFGKPEKLF-SQLSNESNLRSQVLALIATFGYS 428 (720)
T ss_dssp CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH--HHHHTTSCCCCCC-CCTTCHHHHHHHHHHHHHHSCCC
T ss_pred CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHH--HHHHhcCCCCCcE-eecCchhhHHHHHHHHHHhCCCC
Confidence 5899999999999999987 57999999998873322 222332 221 22222 4777778888777665
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.2e-42 Score=457.94 Aligned_cols=369 Identities=20% Similarity=0.298 Sum_probs=285.1
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCc
Q psy6409 1404 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481 (1832)
Q Consensus 1404 ~~~e~~--L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~ 1481 (1832)
+|++++ |++.+.+.++..||..|+|+|.++++.+++++|++++||||||||++|.+|++..+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 477777 9999999999999999999999999999999999999999999999999999976532 56
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1482 ~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
++||++|+++||.|+++.++.+ ..+|+++..++|+....... ..+++|+|+|||+|..++.+....++++++||||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiD 145 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEET
T ss_pred cEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEe
Confidence 8999999999999999999655 44689999999988765432 2378999999999999998877778999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.+++++..+..++..+.. .....|++++|||+++ ...+.. |+..+. + .
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~----------------------~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~--~ 198 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRR----------------------MNKALRVIGLSATAPN-VTEIAE-WLDADY-Y--V 198 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHH----------------------HCTTCEEEEEECCCTT-HHHHHH-HTTCEE-E--E
T ss_pred eeeecCCCCcccHHHHHHHHHHh----------------------cCcCceEEEECCCcCC-HHHHHH-HhCCCc-c--c
Confidence 99999998999999988876631 1245799999999987 344544 444221 1 1
Q ss_pred ccCCCCcceEEEE------EEcchh-------hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc----------
Q psy6409 1642 SVGKPTERIEQIV------YILSEQ-------DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL---------- 1698 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~------~~~~~~-------~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~---------- 1698 (1832)
....+.. +...+ ...... .....+.+.+. ..+++||||++++.|+.++..|...
T Consensus 199 ~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~ 275 (702)
T 2p6r_A 199 SDWRPVP-LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGL 275 (702)
T ss_dssp CCCCSSC-EEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSH
T ss_pred CCCCCcc-ceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHH
Confidence 1122221 11111 111111 13444555554 4689999999999999999988753
Q ss_pred --------------------CCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEE----eC---
Q psy6409 1699 --------------------GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN----YD--- 1751 (1832)
Q Consensus 1699 --------------------~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~----~d--- 1751 (1832)
+.++..|||+|++.+|..+++.|++|+++|||||+++++|||+|++.+||+ ||
T Consensus 276 ~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~ 355 (702)
T 2p6r_A 276 EKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS 355 (702)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE
T ss_pred HHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCC
Confidence 246889999999999999999999999999999999999999999999999 76
Q ss_pred CCCCHHHHHHHhcccccCC--CccEEEEEeeCCChhHHHHHHHHhh----cCCCCCCCh--hhcCCCCCcCCCCcccc
Q psy6409 1752 MAKSIEDYTHRIGRTGRAG--KEGLAVSFCTKDDSHLFYDLKQMMI----SSPVSTCPP--ELLNHPDAQHKPGTVMV 1821 (1832)
Q Consensus 1752 ~P~s~~~yiQRiGRaGR~g--~~G~ai~~~~~~d~~~~~~l~~~l~----~~~~~~~~~--~L~~h~~a~~~~gti~~ 1821 (1832)
.|.|..+|+||+|||||.| ..|.|++++++.+...+ +.+++. +.+ +.+.+ .|.+|..+.+..|++.+
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~--~~~~l~~~~e~~~-s~l~~~~~l~~~~l~~~~~g~~~~ 430 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA--VKRYIFGEPERIT-SKLGVETHLRFHSLSIICDGYAKT 430 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHH--HHTTTSSCCCCCC-CCCCSHHHHHHHHHHHHHHTSCSS
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHH--HHHHhcCCCCCce-eecCcchhHHHHHHHHHHcCCCCC
Confidence 7899999999999999987 57999999998873322 122222 221 33333 35557777888887653
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.7e-41 Score=435.73 Aligned_cols=381 Identities=19% Similarity=0.280 Sum_probs=254.2
Q ss_pred hhhhhhccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHHcCCcEEE
Q psy6409 696 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-----IGYAEPTPIQRQAIPIGLQNRDIIG 770 (1832)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~-----~g~~~pt~iQ~~ai~~il~grdvIv 770 (1832)
++.+..+++++++.....|...+..+. ++++ +.++....+.+ +|. .|+|+|..++|.+++|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 345566777776655555544443322 1222 12233333323 575 99999999999999998 99
Q ss_pred EecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHH
Q psy6409 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850 (1832)
Q Consensus 771 ~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~ 850 (1832)
.++||||||++|+||++.... .++.++||+||++||.|++..+..++..+|+++++++||.+....
T Consensus 93 em~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r-- 158 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK-- 158 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--
T ss_pred eecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--
Confidence 999999999999999985431 356799999999999999999999999999999999999986433
Q ss_pred HHhcCCceeecCHHHH-HHHHHccc------cccCCceeEEEecchhhh-cCC---------------ChHHHHHHHHhC
Q psy6409 851 RLRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYM 907 (1832)
Q Consensus 851 ~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~~~~~lViDEaH~l~-d~g---------------f~~~i~~Il~~l 907 (1832)
.+..+++|+|||||+| .|+|..+. +.+..+.++||||||+|+ |.+ |...+..|+..+
T Consensus 159 ~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L 238 (853)
T 2fsf_A 159 REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHL 238 (853)
T ss_dssp HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------------------
T ss_pred HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhc
Confidence 4445799999999999 78887543 577899999999999999 654 566788888777
Q ss_pred CCCCCC-CCCchhHHHHHHHHhhccccccceE------------------------EEEEecCChHHHHH-----HHHhc
Q psy6409 908 PVTNLK-PDTEDAEDENKLLANYNSKKKYRQT------------------------VMFTATMPPAVERL-----ARSYL 957 (1832)
Q Consensus 908 ~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~q~------------------------v~~SATl~~~v~~~-----~~~~l 957 (1832)
+..... ....... ..+.-..+.+|+ .+||||+|..+..+ +..++
T Consensus 239 ~~~~~~~~~~~~~~------~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~ 312 (853)
T 2fsf_A 239 IRQEKEDSETFQGE------GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALF 312 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcccccccccc------ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHh
Confidence 521000 0000000 000000011121 27888875422211 11111
Q ss_pred C--------CCc-----------------------------EEEEc----------------------------------
Q psy6409 958 R--------RPA-----------------------------TVYIG---------------------------------- 966 (1832)
Q Consensus 958 ~--------~p~-----------------------------~v~~~---------------------------------- 966 (1832)
. ++. .+.+.
T Consensus 313 ~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~e 392 (853)
T 2fsf_A 313 TRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFE 392 (853)
T ss_dssp --------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHH
T ss_pred hcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHH
Confidence 0 110 01111
Q ss_pred ------------ccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEc
Q psy6409 967 ------------SVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031 (1832)
Q Consensus 967 ------------~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lh 1031 (1832)
+...+.....+ .+.++....|...+...+.. ..+.|+||||+|+..++.|+..|...|+++.++|
T Consensus 393 f~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLn 472 (853)
T 2fsf_A 393 FSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 472 (853)
T ss_dssp HHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECC
T ss_pred HHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 11111111111 13456778899888887754 3567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------------------------CEEEE
Q psy6409 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------SMVIN 1074 (1832)
Q Consensus 1032 g~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------------------------~~VI~ 1074 (1832)
|++.+.++..+.+.|+.| .|+||||+|+||+||+.. .+||+
T Consensus 473 ak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~ 550 (853)
T 2fsf_A 473 AKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG 550 (853)
T ss_dssp TTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE
Confidence 999999999999999998 699999999999999974 69999
Q ss_pred cCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1075 YDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1075 ~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|+.|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 551 te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 551 TERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred ccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 99999999999999999999999999999998873
No 49
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-41 Score=462.79 Aligned_cols=330 Identities=19% Similarity=0.246 Sum_probs=266.0
Q ss_pred CCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1403 ~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
..|..+++++.+...+...++..|+|+|.++|+.++.|+++|++||||||||++|++|++..+. .+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCCe
Confidence 3566677777776666666777899999999999999999999999999999999999998763 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEcc
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDE 1562 (1832)
+||++||++|+.|++..+.+++. .+..++|+.+.. .+++|+|+||++|.+++.++...+.++++|||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 99999999999999999999864 477788887743 4689999999999999998888889999999999
Q ss_pred chhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH--HHHHHhcCCCcEEEE
Q psy6409 1563 ADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVYI 1640 (1832)
Q Consensus 1563 aH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~~p~~v~i 1640 (1832)
||+|.+++|+..+..++..++ ..+|+++||||+|+..+ .+...+...|..+..
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~-------------------------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~ 353 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 353 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSC-------------------------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE
T ss_pred hhhccccchHHHHHHHHHhcC-------------------------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 999999999999999998886 34799999999987643 444455555555443
Q ss_pred cccCCCCcceEEEEEEcc---------h----------------------------------------------hhHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILS---------E----------------------------------------------QDKRKK 1665 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~---------~----------------------------------------------~~k~~~ 1665 (1832)
... .+. .+.+++.... . ..+...
T Consensus 354 ~~~-rp~-pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (1108)
T 3l9o_A 354 TNF-RPT-PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYK 431 (1108)
T ss_dssp ECC-CSS-CEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHH
T ss_pred cCC-Ccc-cceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHH
Confidence 322 121 1222221110 0 223334
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC---------------------------------------cEEEEc
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY---------------------------------------NACTLH 1706 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~---------------------------------------~v~~lH 1706 (1832)
++..+......++||||+++..|+.++..|...++ ++..||
T Consensus 432 li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~H 511 (1108)
T 3l9o_A 432 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 511 (1108)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeec
Confidence 55555556677999999999999999998864322 289999
Q ss_pred CCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC--------CCCHHHHHHHhcccccCC--CccEEE
Q psy6409 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM--------AKSIEDYTHRIGRTGRAG--KEGLAV 1776 (1832)
Q Consensus 1707 g~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~--------P~s~~~yiQRiGRaGR~g--~~G~ai 1776 (1832)
|+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++. |.|..+|+||+|||||.| ..|.|+
T Consensus 512 g~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~i 591 (1108)
T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVI 591 (1108)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999997665 448889999999999999 679999
Q ss_pred EEeeCC
Q psy6409 1777 SFCTKD 1782 (1832)
Q Consensus 1777 ~~~~~~ 1782 (1832)
+++++.
T Consensus 592 ll~~~~ 597 (1108)
T 3l9o_A 592 MMIDEK 597 (1108)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 988876
No 50
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=9e-41 Score=459.22 Aligned_cols=332 Identities=20% Similarity=0.290 Sum_probs=267.5
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..|| +|||+|.++||.++.|+|+|++||||||||++|++|++..+ ..++++|||+||++||.|++..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888887654 2478999999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCch---HHHHHHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEecchh----------
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR---------- 890 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~---~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~---------- 890 (1832)
+..++ ..+++++.++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||+
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 789999999999987 6666677766 99999999999988875 6788999999999975
Q ss_pred hhc-CCChHH-HHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEec-CChHHH-HHHHHhcCCCcEEEEc
Q psy6409 891 MID-MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVE-RLARSYLRRPATVYIG 966 (1832)
Q Consensus 891 l~d-~gf~~~-i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SAT-l~~~v~-~~~~~~l~~p~~v~~~ 966 (1832)
|++ +||.+. +..++..++..... .. .......|+++|||| .|..+. .+...++. +.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~-------------~~-~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~ 279 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIY-------------ER-PKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG 279 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCC-------------CC-CSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC
T ss_pred hhHhcCCCHHHHHHHHHhcccchhh-------------hh-hccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec
Confidence 455 899988 88888776410000 00 011145899999999 565544 23333332 3333
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHHHHH
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~-~lhg~~~~~~R~~il~~ 1045 (1832)
........+.+.+..+ .+...|.+++.. .++++||||+++..|+.++..|...|+.+. .+|| +|.. ++.
T Consensus 280 ~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 280 RLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FED 349 (1104)
T ss_dssp BCCCCCCCEEEEEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHH
T ss_pred cCCCCcCCceeEEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHH
Confidence 4444556677776655 345556666665 348899999999999999999999999998 9999 2555 999
Q ss_pred HhCCCCcEEEe----cccccccCCCcC-cCEEEEcCCCC-----------------------------------------
Q psy6409 1046 LKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK----------------------------------------- 1079 (1832)
Q Consensus 1046 F~~G~~~VLVa----Tdv~~rGlDip~-v~~VI~~d~p~----------------------------------------- 1079 (1832)
|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~ 429 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAK 429 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHH
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999 99999999998
Q ss_pred -------------------------------CHhHHHHHhcccccCCCCc--EEEEEecCCCchHHHHHHHHHh
Q psy6409 1080 -------------------------------SIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1080 -------------------------------s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
++.+|+||+|||||.|..| .+++++..+|...++.|.+.+.
T Consensus 430 ~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 430 EHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999976543 4555555688899999988775
No 51
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.2e-40 Score=435.58 Aligned_cols=334 Identities=19% Similarity=0.254 Sum_probs=206.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
+..+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999998775421 1237789999999999999999999
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+..+++|||||||++.++++ +..++.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~ 153 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 153 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHH
Confidence 9988889999999999987776667777899999999999999988877 799999999999999987763 222221
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHHH------------------Hh
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLAR------------------SY 956 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~~------------------~~ 956 (1832)
.+. ...........+++++|||++. .+..+.. .+
T Consensus 154 ~~~-----------------~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 216 (556)
T 4a2p_A 154 RYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRF 216 (556)
T ss_dssp HHH-----------------HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHH
T ss_pred HHH-----------------HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhc
Confidence 110 1111112345789999999853 1111111 12
Q ss_pred cCCCcEEEEcccCCCCcceE---------------------EEE------E-------Ec--------------------
Q psy6409 957 LRRPATVYIGSVGKPTERIE---------------------QIV------Y-------IL-------------------- 982 (1832)
Q Consensus 957 l~~p~~v~~~~~~~~~~~i~---------------------q~~------~-------~~-------------------- 982 (1832)
...|................ ... . ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (556)
T 4a2p_A 217 MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 296 (556)
T ss_dssp TCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred CCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHH
Confidence 22222222111100000000 000 0 00
Q ss_pred ------------------------------------------------------------------------chhhHHHH
Q psy6409 983 ------------------------------------------------------------------------SEQDKRKK 990 (1832)
Q Consensus 983 ------------------------------------------------------------------------~~~~k~~~ 990 (1832)
....|...
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~ 376 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEE 376 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHH
Confidence 01345666
Q ss_pred HHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCCcE
Q psy6409 991 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSKDI 1053 (1832)
Q Consensus 991 L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~~V 1053 (1832)
|.+++.. ..+.++||||+++..++.+++.|... |.....+||+|++.+|..+++.|++ |.++|
T Consensus 377 L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 456 (556)
T 4a2p_A 377 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 456 (556)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE
T ss_pred HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE
Confidence 6666654 46789999999999999999999775 5666777889999999999999999 99999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999999999999999999999999999 998 67999999998754
No 52
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6.7e-41 Score=449.84 Aligned_cols=348 Identities=21% Similarity=0.247 Sum_probs=227.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 740 ~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..++..+||..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3567788999999999999999999999999999999999999999998775421 123478999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChH
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
|+.+.+.+++...++++..++||.....+...+..+++|+|+|||+|.+.+..+.+ .+..+++|||||||++.+..
T Consensus 76 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~--- 152 (696)
T 2ykg_A 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--- 152 (696)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---
T ss_pred HHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---
Confidence 99999999998889999999999876666666667899999999999999988776 78999999999999988543
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC--------hHHHHHHHH---------------
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP--------PAVERLARS--------------- 955 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~--------~~v~~~~~~--------------- 955 (1832)
.+..++..+- . ...........+++++|||+. ..+..+...
T Consensus 153 ~~~~i~~~~l--------------~--~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 216 (696)
T 2ykg_A 153 PYNMIMFNYL--------------D--QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHN 216 (696)
T ss_dssp HHHHHHHHHH--------------H--HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTT
T ss_pred cHHHHHHHHH--------------H--HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccc
Confidence 2232221110 0 000011124468999999986 111211111
Q ss_pred ------hcCCCcEEEEcccCCCC---------------------------------------------------------
Q psy6409 956 ------YLRRPATVYIGSVGKPT--------------------------------------------------------- 972 (1832)
Q Consensus 956 ------~l~~p~~v~~~~~~~~~--------------------------------------------------------- 972 (1832)
+...|............
T Consensus 217 ~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (696)
T 2ykg_A 217 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 296 (696)
T ss_dssp HHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC---
T ss_pred hHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhc
Confidence 11222221110000000
Q ss_pred ------------------------------------------------------cceEEEEEE----------------c
Q psy6409 973 ------------------------------------------------------ERIEQIVYI----------------L 982 (1832)
Q Consensus 973 ------------------------------------------------------~~i~q~~~~----------------~ 982 (1832)
..+.+.+.. .
T Consensus 297 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 297 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 000000000 0
Q ss_pred chhhHHHHHHHHHHcC----CCCCEEEEEcccchHHHHHHHHHHcC----CcEEEE--------cCCCCHHHHHHHHHHH
Q psy6409 983 SEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLG----YNACTL--------HGGKGQEQRELALNSL 1046 (1832)
Q Consensus 983 ~~~~k~~~L~~~l~~~----~~~~vIVFv~s~~~~~~l~~~L~~~g----~~v~~l--------hg~~~~~~R~~il~~F 1046 (1832)
....|...|.+++... .+.++||||+++..|+.+++.|...+ +.+..+ ||+|++.+|..+++.|
T Consensus 377 ~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp GCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 1345677777777654 56789999999999999999999988 888888 5699999999999999
Q ss_pred hC-CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1047 KG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1047 ~~-G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
++ |.++|||||+++++|||+|+|++||+||+|.++.+|+||+|| ||. ..|.+++|++.++......+
T Consensus 457 ~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 457 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred HhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 98 999999999999999999999999999999999999999999 998 67999999998775444433
No 53
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.6e-40 Score=451.35 Aligned_cols=332 Identities=20% Similarity=0.288 Sum_probs=264.6
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|| .|+|+|.++++.++.|+|++++||||||||++|++|++..+ ..++++|||+||++||.|+++.
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888887654 2478899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcch---HHHHHHhhcC-CcEEEeCHHHHHHHHHccccccCCceeEEEccchhh---------
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSR---EEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM--------- 1566 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~---~~~~~~l~~~-~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l--------- 1566 (1832)
+++++ ..+++++.++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 778999999999987 5566667666 99999999999888774 67889999999999754
Q ss_pred -hc-CCChHH-HHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEcc-CChHHHH-HHHHhcCCCcEEEEc
Q psy6409 1567 -ID-MGFEPD-VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT-MPPAVER-LARSYLRRPATVYIG 1641 (1832)
Q Consensus 1567 -l~-~gf~~~-l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SAT-l~~~~~~-~~~~~l~~p~~v~i~ 1641 (1832)
++ +||.+. +..++..++...... ........|+++|||| .|..+.. +...++. +.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~--------------~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~ 279 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYE--------------RPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG 279 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCC--------------CCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhh--------------hhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec
Confidence 45 888888 788887664100000 0011145799999999 5655442 2333332 2333
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEE-EEcCCCCHHHHHHHHHH
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNAC-TLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~-~lHg~ls~~~R~~il~~ 1720 (1832)
........+.+.+..+ .+...|..++.. ...++||||+++..|+.++..|...|+.+. .+|| +|.. ++.
T Consensus 280 ~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~ 349 (1104)
T 4ddu_A 280 RLVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FED 349 (1104)
T ss_dssp BCCCCCCCEEEEEESC---CCHHHHHHHHHH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHH
T ss_pred cCCCCcCCceeEEEec---CHHHHHHHHHHh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHH
Confidence 3344455666766555 455666777766 348999999999999999999999999998 9999 2555 999
Q ss_pred hhCCCCcEEEE----cccccccCCCCC-CCEEEEeCCCC-----------------------------------------
Q psy6409 1721 LKGGSKDILVA----TDVAGRGIDIKD-VSMVINYDMAK----------------------------------------- 1754 (1832)
Q Consensus 1721 F~~g~~~VLVA----Tdvl~~GIDip~-v~~VI~~d~P~----------------------------------------- 1754 (1832)
|++|+++|||| |+++++|||+|+ |++|||||+|.
T Consensus 350 F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~ 429 (1104)
T 4ddu_A 350 FKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAK 429 (1104)
T ss_dssp HHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHH
T ss_pred HHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999 99999999998
Q ss_pred -------------------------------CHHHHHHHhcccccCCCcc--EEEEEeeCCChhHHHHHHHHhh
Q psy6409 1755 -------------------------------SIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1755 -------------------------------s~~~yiQRiGRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
++.+|+||+|||||.|..| .+++++..+|...+..|.+.+.
T Consensus 430 ~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 430 EHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp HCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 8889999999999965432 3455555588888988887764
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=441.64 Aligned_cols=312 Identities=20% Similarity=0.276 Sum_probs=256.8
Q ss_pred HHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHH
Q psy6409 744 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823 (1832)
Q Consensus 744 ~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~ 823 (1832)
..++|. |+|+|.+||+.+..|+++|++||||||||++|.+|++..+. .+.++||++||++|+.|++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 346775 99999999999999999999999999999999999987652 36799999999999999999
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
.+.+++. .++.++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|.+++++..+..+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998754 678888987643 35899999999999999888778999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHH---hcCCCcEEEEcccCCCCcceEEEEE
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS---YLRRPATVYIGSVGKPTERIEQIVY 980 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~---~l~~p~~v~~~~~~~~~~~i~q~~~ 980 (1832)
+..++ ...|++++|||+|+..+ ++.. ....|..+....... ..+.+.++
T Consensus 217 l~~l~-------------------------~~~~il~LSATi~n~~e-~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~ 268 (1010)
T 2xgj_A 217 IILLP-------------------------DKVRYVFLSATIPNAME-FAEWICKIHSQPCHIVYTNFRP--TPLQHYLF 268 (1010)
T ss_dssp HHHSC-------------------------TTCEEEEEECCCTTHHH-HHHHHHHHHTSCEEEEEECCCS--SCEEEEEE
T ss_pred HHhcC-------------------------CCCeEEEEcCCCCCHHH-HHHHHHhhcCCCeEEEecCCCc--ccceEEEE
Confidence 88775 24799999999987543 3333 335565555443222 22333332
Q ss_pred Ecc---------h----------------------------------------------hhHHHHHHHHHHcCCCCCEEE
Q psy6409 981 ILS---------E----------------------------------------------QDKRKKLMEVLNRGVKKPVII 1005 (1832)
Q Consensus 981 ~~~---------~----------------------------------------------~~k~~~L~~~l~~~~~~~vIV 1005 (1832)
... . ......++..+......++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IV 348 (1010)
T 2xgj_A 269 PAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIV 348 (1010)
T ss_dssp ETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEE
T ss_pred ecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEE
Confidence 210 0 112334555555556678999
Q ss_pred EEcccchHHHHHHHHHHcCC---------------------------------------cEEEEcCCCCHHHHHHHHHHH
Q psy6409 1006 FVNQKKGADVLAKGLEKLGY---------------------------------------NACTLHGGKGQEQRELALNSL 1046 (1832)
Q Consensus 1006 Fv~s~~~~~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~~R~~il~~F 1046 (1832)
||+++..|+.++..|...++ ++.++||+|++.+|..+++.|
T Consensus 349 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F 428 (1010)
T 2xgj_A 349 FSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILF 428 (1010)
T ss_dssp EESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHH
Confidence 99999999999999876443 388999999999999999999
Q ss_pred hCCCCcEEEecccccccCCCcCcCEEEE----cCC----CCCHhHHHHHhcccccCCCC--cEEEEEecCC
Q psy6409 1047 KGGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAGKE--GLAVSFCTKD 1107 (1832)
Q Consensus 1047 ~~G~~~VLVaTdv~~rGlDip~v~~VI~----~d~----p~s~~~yvQr~GRaGR~g~~--G~ai~~~~~~ 1107 (1832)
++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.|.+ |.|++|+++.
T Consensus 429 ~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 429 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred hcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999999999999999 999 88999999999999999974 9999999976
No 55
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.5e-41 Score=463.14 Aligned_cols=335 Identities=21% Similarity=0.273 Sum_probs=268.8
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 741 EIIE-KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 741 ~~l~-~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
+.+. .+||. | |+|.++||.++.|+|+|++||||||||+ |++|++..+.. .++++|||+||++||.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHH
Confidence 4343 48999 9 9999999999999999999999999998 99999876532 4689999999999999
Q ss_pred HHHHHHHHhcCCCCC----eEEEEEcCCchHHH---HHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 820 QIEEETNKFGTPLGI----RTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i----~v~~~~Gg~~~~~~---~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|+++.+++++..+++ +++.++||.+...+ ...+.. ++|+|+|||+|.+++.+ ++.+++|||||||+|+
T Consensus 114 Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 114 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhh
Confidence 999999999988888 89999999987663 334455 99999999999987765 6799999999999999
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~ 972 (1832)
+ |+..+..++..+........ .......|+++||||+++. ..++..++.++..+.+.......
T Consensus 189 ~--~~~~~~~i~~~lgf~~~~~~--------------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~ 251 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYDLKT--------------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITV 251 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEETTT--------------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECC
T ss_pred h--ccccHHHHHHHhCcchhhhh--------------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCc
Confidence 8 67899999887742110000 1112457899999999887 54444444444434444333344
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
..+.+.+. ...+...|.+++... +.++||||+++..|+.+++.|... +.+..+||++ ..+++.|++|+++
T Consensus 252 ~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~ 321 (1054)
T 1gku_B 252 RNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEID 321 (1054)
T ss_dssp CCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCS
T ss_pred CCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCc
Confidence 55666544 345566677777654 578999999999999999999988 9999999998 4789999999999
Q ss_pred EEEe----cccccccCCCcCc-CEEEEcCCC-------------------------------------------------
Q psy6409 1053 ILVA----TDVAGRGIDIKDV-SMVINYDMA------------------------------------------------- 1078 (1832)
Q Consensus 1053 VLVa----Tdv~~rGlDip~v-~~VI~~d~p------------------------------------------------- 1078 (1832)
|||| |+++++|||+|+| ++||+||+|
T Consensus 322 VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILK 401 (1054)
T ss_dssp EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHH
T ss_pred EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999996 999999999
Q ss_pred ----------------------CCHhHHHHHhcccccCCCCc--EEEEEecCCCchHHHHHHHHHhc
Q psy6409 1079 ----------------------KSIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1079 ----------------------~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
.+..+|+||+|||||.|..| .+++|+..+|..++..|.+.+..
T Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 402 KVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988876 49999999999999999888765
No 56
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=425.68 Aligned_cols=338 Identities=21% Similarity=0.259 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
-+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...+.++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999998875422 133778999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
+...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+..+++|||||||++.+.+. +..++..+
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~ 152 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRY 152 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHH
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHH
Confidence 88889999999999987777667777899999999999999988777 789999999999999987652 33332211
Q ss_pred CCCCCCCCCchhHHHHHHHHh-hccccccceEEEEEecCChH--------HHH---HHHH------------------hc
Q psy6409 908 PVTNLKPDTEDAEDENKLLAN-YNSKKKYRQTVMFTATMPPA--------VER---LARS------------------YL 957 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~q~v~~SATl~~~--------v~~---~~~~------------------~l 957 (1832)
. ... ........+++++|||++.. ... +... +.
T Consensus 153 ~-----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 215 (555)
T 3tbk_A 153 L-----------------DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVV 215 (555)
T ss_dssp H-----------------HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTC
T ss_pred H-----------------HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhc
Confidence 0 000 01112457999999998542 111 1111 11
Q ss_pred CCCcEEEEcccCCCCcceEE--------------------------------------EE--------------------
Q psy6409 958 RRPATVYIGSVGKPTERIEQ--------------------------------------IV-------------------- 979 (1832)
Q Consensus 958 ~~p~~v~~~~~~~~~~~i~q--------------------------------------~~-------------------- 979 (1832)
..|................. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (555)
T 3tbk_A 216 YKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESR 295 (555)
T ss_dssp CCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHH
T ss_pred CCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHH
Confidence 11111111000000000000 00
Q ss_pred ---------------------------------------------------------------------EEcchhhHHHH
Q psy6409 980 ---------------------------------------------------------------------YILSEQDKRKK 990 (1832)
Q Consensus 980 ---------------------------------------------------------------------~~~~~~~k~~~ 990 (1832)
.......|...
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 375 (555)
T 3tbk_A 296 VCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHH
Confidence 00001345566
Q ss_pred HHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHcC------------CcEEEEcCCCCHHHHHHHHHHHhC-CCCcE
Q psy6409 991 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLG------------YNACTLHGGKGQEQRELALNSLKG-GSKDI 1053 (1832)
Q Consensus 991 L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~g------------~~v~~lhg~~~~~~R~~il~~F~~-G~~~V 1053 (1832)
|.+++.. ....++||||+++..++.++..|...+ .....+||+|++.+|..+++.|++ |.++|
T Consensus 376 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 455 (555)
T 3tbk_A 376 LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI 455 (555)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSE
T ss_pred HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeE
Confidence 6666654 456899999999999999999998863 345566779999999999999999 99999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHH
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l 1115 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|+++++......+
T Consensus 456 LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 456 LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999 998 78999999998865444443
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-38 Score=435.29 Aligned_cols=320 Identities=20% Similarity=0.274 Sum_probs=258.9
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1419 ~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
..++|. |+|+|.++++.+..|++++++||||||||++|++|++..+. .+.++||++||++|+.|++.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 456774 99999999999999999999999999999999999987653 36789999999999999999
Q ss_pred HHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1499 ~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
.+.+++. .+..++|+.... .+++|+|+||++|.+++.++...+.++++|||||||+|.+++++..++.+
T Consensus 148 ~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 148 ELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred HHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 9998764 577888987754 25899999999999999888888999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH--HHHHHhcCCCcEEEEcccCCCCcceEEEEEE
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE--RLARSYLRRPATVYIGSVGKPTERIEQIVYI 1656 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~--~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~ 1656 (1832)
+..++ ...|++++|||+|+..+ ..+......+..+.... ..+. .+.+++..
T Consensus 217 l~~l~-------------------------~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~-~rp~-pl~~~~~~ 269 (1010)
T 2xgj_A 217 IILLP-------------------------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-FRPT-PLQHYLFP 269 (1010)
T ss_dssp HHHSC-------------------------TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC-CCSS-CEEEEEEE
T ss_pred HHhcC-------------------------CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-CCcc-cceEEEEe
Confidence 88775 34799999999988643 22222334455444332 2222 23333322
Q ss_pred cc---------h----------------------------------------------hhHHHHHHHHHHhCCCCcEEEE
Q psy6409 1657 LS---------E----------------------------------------------QDKRKKLMEVLNRGVKKPVIIF 1681 (1832)
Q Consensus 1657 ~~---------~----------------------------------------------~~k~~~l~~~l~~~~~~~vIVF 1681 (1832)
.. . ......++..+......++|||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF 349 (1010)
T 2xgj_A 270 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 349 (1010)
T ss_dssp TTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 10 0 1112334445544556699999
Q ss_pred ECchhHHHHHHHHHHHcCC---------------------------------------cEEEEcCCCCHHHHHHHHHHhh
Q psy6409 1682 VNQKKGADVLAKGLEKLGY---------------------------------------NACTLHGGKGQEQRELALNSLK 1722 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~~---------------------------------------~v~~lHg~ls~~~R~~il~~F~ 1722 (1832)
|+++..|+.++..|...++ +++.|||+|++.+|..+++.|+
T Consensus 350 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~ 429 (1010)
T 2xgj_A 350 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 429 (1010)
T ss_dssp ESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHh
Confidence 9999999999998876443 3899999999999999999999
Q ss_pred CCCCcEEEEcccccccCCCCCCCEEEE----eCC----CCCHHHHHHHhcccccCCC--ccEEEEEeeCC-ChhHHHH
Q psy6409 1723 GGSKDILVATDVAGRGIDIKDVSMVIN----YDM----AKSIEDYTHRIGRTGRAGK--EGLAVSFCTKD-DSHLFYD 1789 (1832)
Q Consensus 1723 ~g~~~VLVATdvl~~GIDip~v~~VI~----~d~----P~s~~~yiQRiGRaGR~g~--~G~ai~~~~~~-d~~~~~~ 1789 (1832)
+|.++|||||+++++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.|++|+++. +...+..
T Consensus 430 ~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~ 507 (1010)
T 2xgj_A 430 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKG 507 (1010)
T ss_dssp TTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHH
T ss_pred cCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHH
Confidence 999999999999999999999999999 999 8899999999999999986 59999999876 4444433
No 58
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.8e-40 Score=427.81 Aligned_cols=334 Identities=19% Similarity=0.257 Sum_probs=205.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
+...|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999999998876532 1237789999999999999999999
Q ss_pred HhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.++++ +..++.
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~ 153 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMT 153 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHH
Confidence 9988889999999999987766666667899999999999999988877 799999999999999987763 222221
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-----------HHHHHH------------------Hh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-----------VERLAR------------------SY 1631 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-----------~~~~~~------------------~~ 1631 (1832)
.+ +...........+++++|||++.. +..++. .+
T Consensus 154 ~~-----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~ 216 (556)
T 4a2p_A 154 RY-----------------LEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRF 216 (556)
T ss_dssp HH-----------------HHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHH
T ss_pred HH-----------------HHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhc
Confidence 11 001111123457899999999531 111111 12
Q ss_pred cCCCcEEEEcccCCCCcce---------------------EEEEE-------------Ec--------------------
Q psy6409 1632 LRRPATVYIGSVGKPTERI---------------------EQIVY-------------IL-------------------- 1657 (1832)
Q Consensus 1632 l~~p~~v~i~~~~~~~~~i---------------------~q~~~-------------~~-------------------- 1657 (1832)
...|....+.......... ..... ++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (556)
T 4a2p_A 217 MNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESR 296 (556)
T ss_dssp TCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred CCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHH
Confidence 2222222111110000000 00000 00
Q ss_pred ------------------------------------------------------------------------chhhHHHH
Q psy6409 1658 ------------------------------------------------------------------------SEQDKRKK 1665 (1832)
Q Consensus 1658 ------------------------------------------------------------------------~~~~k~~~ 1665 (1832)
....|...
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~ 376 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEE 376 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHH
Confidence 01335555
Q ss_pred HHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCCcE
Q psy6409 1666 LMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSKDI 1728 (1832)
Q Consensus 1666 l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~~V 1728 (1832)
|.+++.. ....++||||+++.+++.++..|... |.+...+||+|++.+|..+++.|++ |+++|
T Consensus 377 L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v 456 (556)
T 4a2p_A 377 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 456 (556)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE
T ss_pred HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE
Confidence 6666643 46789999999999999999999775 5666777889999999999999999 99999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 457 LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 457 LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 9999999999999999999999999999999999999 998 78999999998754
No 59
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.8e-39 Score=411.24 Aligned_cols=343 Identities=21% Similarity=0.265 Sum_probs=268.7
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+|+ .|+|+|..++|.+++|+ |+.++||+|||++|+||++...+ .|..++||+||++||.|++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHHHH
Confidence 3799 99999999999999998 99999999999999999975432 256799999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHcc------ccccCCceeEEEecchhhh-cC--
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DM-- 894 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~------~~~l~~~~~lViDEaH~l~-d~-- 894 (1832)
+..+...+|+++++++||.+.... .+..+++|+||||++| .|+|..+ .+.+..+.++||||||+|+ |.
T Consensus 172 m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 172 MGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 999999999999999999986544 3344799999999999 7888654 3577899999999999998 43
Q ss_pred -------------CChHHHHHHHHhCCCC---------C--------------------CCCCCch--hHHHHHHHHh--
Q psy6409 895 -------------GFEPDVQKILEYMPVT---------N--------------------LKPDTED--AEDENKLLAN-- 928 (1832)
Q Consensus 895 -------------gf~~~i~~Il~~l~~~---------~--------------------~~~~~~~--~~~~~~ll~~-- 928 (1832)
+|...+..|+..++.. . +...+.. .......+..
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 5778999999988620 0 0000000 0000000000
Q ss_pred --------------------------------------------hc---------------cccccceEEEEEecCChHH
Q psy6409 929 --------------------------------------------YN---------------SKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 929 --------------------------------------------~~---------------~~~~~~q~v~~SATl~~~v 949 (1832)
+. -...+..+.++|+|.....
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 00 0012345677888887766
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCc
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1026 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~ 1026 (1832)
..|...|--+ .+.+ +...+.....+ .+.+.....|...+...+.. ..+.|+||||+|+..++.|+..|...|++
T Consensus 410 ~Ef~~iY~l~--vv~I-Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLG--VVSI-PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHHHHHCCE--EEEC-CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC--eEEe-CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 6666666322 2222 33444444433 24556778899888887754 25678999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------------------------
Q psy6409 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV------------------------------------- 1069 (1832)
Q Consensus 1027 v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v------------------------------------- 1069 (1832)
+.++||++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888889888 699999999999999975
Q ss_pred ---------------CEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1070 ---------------SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1070 ---------------~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999999874
No 60
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.4e-39 Score=417.97 Aligned_cols=378 Identities=19% Similarity=0.268 Sum_probs=257.4
Q ss_pred hhhcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHH-----cCCCCCcHHHHHHHHHHhcCCcEEEE
Q psy6409 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK-----IGYAEPTPIQRQAIPIGLQNRDIIGV 1446 (1832)
Q Consensus 1372 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~-----~g~~~ptpiQ~~ai~~il~g~dvii~ 1446 (1832)
..+..++++++......|...+..+. ++++ +.++.+..+.+ +|. .|+|+|..++|.++.|+ |+.
T Consensus 25 ~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~--~lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iae 93 (853)
T 2fsf_A 25 PEMEKLSDEELKGKTAEFRARLEKGE------VLEN--LIPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAE 93 (853)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTC------CHHH--HHHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEE
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHcCC------Chhh--hhHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eee
Confidence 34556666666555444444333321 1222 23344443333 575 89999999999999998 999
Q ss_pred cCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHH
Q psy6409 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526 (1832)
Q Consensus 1447 ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~ 1526 (1832)
++||||||++|.+|++.... .++.|+||+||++||.|++.++..++..+|+++++++||.+.... .
T Consensus 94 m~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~ 159 (853)
T 2fsf_A 94 MRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--R 159 (853)
T ss_dssp CCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--H
T ss_pred ecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--H
Confidence 99999999999999985432 356799999999999999999999999999999999999987543 3
Q ss_pred hhcCCcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhh-cCC---------------ChHHHHHHHHhCC
Q psy6409 1527 LRLGCEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMI-DMG---------------FEPDVQKILEYMP 1583 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll-~~g---------------f~~~l~~Il~~l~ 1583 (1832)
+..+++|+||||++| .+++..+. +.+..+.++|+||||+|+ +.+ |...+..|+..++
T Consensus 160 ~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~ 239 (853)
T 2fsf_A 160 EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLI 239 (853)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC-------------------
T ss_pred HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhch
Confidence 445799999999999 78887653 567899999999999998 543 5667778887775
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceE------------------------EEEEccCCh-----------------
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQT------------------------VMFTATMPP----------------- 1622 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~------------------------v~~SATl~~----------------- 1622 (1832)
........ ..... ..+.-..+.+|+ .+||||++.
T Consensus 240 ~~~~~~~~--~~~~~---~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~ 314 (853)
T 2fsf_A 240 RQEKEDSE--TFQGE---GHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTR 314 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccc--ccccc---ccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhc
Confidence 31000000 00000 000000001111 156666543
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy6409 1623 --------------------------------------------------------------------------AVERLA 1628 (1832)
Q Consensus 1623 --------------------------------------------------------------------------~~~~~~ 1628 (1832)
....+.
T Consensus 315 d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~ 394 (853)
T 2fsf_A 315 DVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 394 (853)
T ss_dssp ------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHH
T ss_pred CccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHH
Confidence 222222
Q ss_pred HHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCcEEEE
Q psy6409 1629 RSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705 (1832)
Q Consensus 1629 ~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~l 1705 (1832)
..|.- ..+ +-+...+.....+ .+.++....|...++..+.. ....|+||||+|+..++.|+..|...|+++.++
T Consensus 395 ~iY~l--~vv-~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vL 471 (853)
T 2fsf_A 395 SIYKL--DTV-VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 471 (853)
T ss_dssp HHHCC--EEE-ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEEC
T ss_pred HHhCC--cEE-EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 22210 011 1122222222222 13456778899899888754 356799999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------------------------CEEE
Q psy6409 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------------------------SMVI 1748 (1832)
Q Consensus 1706 Hg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------------------------~~VI 1748 (1832)
||.+.+.++..+.+.|+.| .|+|||++++||+||+.. .+||
T Consensus 472 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI 549 (853)
T 2fsf_A 472 NAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII 549 (853)
T ss_dssp CTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE
Confidence 9999999999999999988 699999999999999973 6999
Q ss_pred EeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1749 ~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 550 ~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 550 GTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp ESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred EccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 999999999999999999999999999999998874
No 61
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.6e-39 Score=438.63 Aligned_cols=336 Identities=19% Similarity=0.249 Sum_probs=214.3
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-+|+..|+|+|.++|+.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999998875421 12377899999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
+++++...++++..++||.....+...+..+++|+|+||++|.+.+.++.+ .+..+++|||||||++.+.+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i 392 (797)
T 4a2q_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (797)
T ss_dssp HHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHH
T ss_pred HHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987777777777899999999999999988777 789999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHHH------------------
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLAR------------------ 954 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~~------------------ 954 (1832)
+..+. ...........+++++|||++. .+..+..
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~ 455 (797)
T 4a2q_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (797)
T ss_dssp HHHHH-----------------HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred HHHHH-----------------HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH
Confidence 32220 0111112345799999999852 2222221
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--E-E-------Ec------------------
Q psy6409 955 SYLRRPATVYIGSVGKPTER------------------------IEQI--V-Y-------IL------------------ 982 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~------------------------i~q~--~-~-------~~------------------ 982 (1832)
.++..|.............. +... . + ++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (797)
T 4a2q_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (797)
T ss_dssp HHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHH
T ss_pred HhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchh
Confidence 12222222111100000000 0000 0 0 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 983 --------------------------------------------------------------------------SEQDKR 988 (1832)
Q Consensus 983 --------------------------------------------------------------------------~~~~k~ 988 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (797)
T 4a2q_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHH
Confidence 013355
Q ss_pred HHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCC
Q psy6409 989 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1051 (1832)
Q Consensus 989 ~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~ 1051 (1832)
..|.++|.. ..+.++||||+++..++.++..|... |.++..+||+|++.+|..+++.|++ |.+
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 666666654 56689999999999999999999873 5677788999999999999999999 999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999 998 77999999988753
No 62
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.6e-39 Score=436.35 Aligned_cols=341 Identities=21% Similarity=0.263 Sum_probs=224.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1415 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1415 l~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
..++..+||..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3566788999999999999999999999999999999999999999998775532 123468999999999999
Q ss_pred HHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChH
Q psy6409 1495 QIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1495 Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+..
T Consensus 76 Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~--- 152 (696)
T 2ykg_A 76 QNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--- 152 (696)
T ss_dssp HHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---
T ss_pred HHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---
Confidence 99999999988889999999999876665566667899999999999999988776 78999999999999987553
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhh-ccccCcceEEEEEccCC--------hHHHHHHHH--------------
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANY-NSKKKYRQTVMFTATMP--------PAVERLARS-------------- 1630 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~q~v~~SATl~--------~~~~~~~~~-------------- 1630 (1832)
.+..++..+- ...+ .......+++++|||+. ..+..+...
T Consensus 153 ~~~~i~~~~l-----------------~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 215 (696)
T 2ykg_A 153 PYNMIMFNYL-----------------DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKH 215 (696)
T ss_dssp HHHHHHHHHH-----------------HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCT
T ss_pred cHHHHHHHHH-----------------HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeeccc
Confidence 2333321110 0000 11124579999999997 112222111
Q ss_pred -------hcCCCcEEEEcccCCCC--------------------------------------------------------
Q psy6409 1631 -------YLRRPATVYIGSVGKPT-------------------------------------------------------- 1647 (1832)
Q Consensus 1631 -------~l~~p~~v~i~~~~~~~-------------------------------------------------------- 1647 (1832)
+...|............
T Consensus 216 ~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (696)
T 2ykg_A 216 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 295 (696)
T ss_dssp THHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC--
T ss_pred chHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhh
Confidence 11222221111000000
Q ss_pred -------------------------------------------------------cceEEEEEE----------------
Q psy6409 1648 -------------------------------------------------------ERIEQIVYI---------------- 1656 (1832)
Q Consensus 1648 -------------------------------------------------------~~i~q~~~~---------------- 1656 (1832)
..+.+.+..
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 375 (696)
T 2ykg_A 296 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 375 (696)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCG
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 000000000
Q ss_pred cchhhHHHHHHHHHHhC----CCCcEEEEECchhHHHHHHHHHHHcC----CcEEEE--------cCCCCHHHHHHHHHH
Q psy6409 1657 LSEQDKRKKLMEVLNRG----VKKPVIIFVNQKKGADVLAKGLEKLG----YNACTL--------HGGKGQEQRELALNS 1720 (1832)
Q Consensus 1657 ~~~~~k~~~l~~~l~~~----~~~~vIVFv~s~~~a~~l~~~L~~~~----~~v~~l--------Hg~ls~~~R~~il~~ 1720 (1832)
.....|...|..++... ...++||||+++.+|+.++..|...+ +.+..+ ||+|++.+|..+++.
T Consensus 376 ~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~ 455 (696)
T 2ykg_A 376 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 455 (696)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHH
Confidence 01234666677777654 56799999999999999999999987 888888 569999999999999
Q ss_pred hhC-CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1721 LKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1721 F~~-g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
|++ |+++|||||+++++|||+|+|++||+||+|.|..+|+||+|| ||. +.|.+++|++..+.
T Consensus 456 F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 456 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 518 (696)
T ss_dssp -----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHH
T ss_pred HHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCH
Confidence 998 999999999999999999999999999999999999999999 998 78999999988765
No 63
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-39 Score=449.40 Aligned_cols=332 Identities=20% Similarity=0.271 Sum_probs=265.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHH
Q psy6409 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498 (1832)
Q Consensus 1419 ~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~ 1498 (1832)
+.+||. | |+|.++|+.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHHHHHH
Confidence 348999 9 9999999999999999999999999998 88999876543 46789999999999999999
Q ss_pred HHHHhcCCCCC----eEEEEECCcchHHH---HHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCC
Q psy6409 1499 ETNKFGTPLGI----RTVLVVGGLSREEQ---GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGF 1571 (1832)
Q Consensus 1499 ~~~~~~~~~g~----~v~~l~gg~~~~~~---~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf 1571 (1832)
.+++++..+++ ++..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|++ +
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999987663 333445 99999999999987765 67999999999999998 5
Q ss_pred hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceE
Q psy6409 1572 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIE 1651 (1832)
Q Consensus 1572 ~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~ 1651 (1832)
+..+..++..++....... .......|++++|||++.. ..+...++..+..+.+.........+.
T Consensus 191 ~~~~~~i~~~lgf~~~~~~--------------~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~ 255 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKT--------------KSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVE 255 (1054)
T ss_dssp THHHHHHHHHTTEEEETTT--------------TEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEE
T ss_pred cccHHHHHHHhCcchhhhh--------------hhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCce
Confidence 7888999888753210000 1112457899999999887 533333433333333333333344555
Q ss_pred EEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEE
Q psy6409 1652 QIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731 (1832)
Q Consensus 1652 q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVA 1731 (1832)
+.+. ...+...+..++... ..++||||+++..|+.++..|... +.+..+||++ ..+++.|++|+++||||
T Consensus 256 ~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 256 DVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp EEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEE
T ss_pred EEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEE
Confidence 5544 345666677777655 578999999999999999999988 9999999998 47899999999999999
Q ss_pred ----cccccccCCCCCC-CEEEEeCCC-----------------------------------------------------
Q psy6409 1732 ----TDVAGRGIDIKDV-SMVINYDMA----------------------------------------------------- 1753 (1832)
Q Consensus 1732 ----Tdvl~~GIDip~v-~~VI~~d~P----------------------------------------------------- 1753 (1832)
|+++++|||+|+| ++||+||+|
T Consensus 326 Tas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1054)
T 1gku_B 326 TAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMG 405 (1054)
T ss_dssp ECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHT
T ss_pred ecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999996 999999999
Q ss_pred ------------------CCHHHHHHHhcccccCCCcc--EEEEEeeCCChhHHHHHHHHhhc
Q psy6409 1754 ------------------KSIEDYTHRIGRTGRAGKEG--LAVSFCTKDDSHLFYDLKQMMIS 1796 (1832)
Q Consensus 1754 ------------------~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~d~~~~~~l~~~l~~ 1796 (1832)
.|..+|+||+|||||.|..| .+++|+..+|...+..+.+.+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 406 KERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred cccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 79999999999999987776 48999999999999888887764
No 64
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.4e-39 Score=422.79 Aligned_cols=335 Identities=21% Similarity=0.267 Sum_probs=231.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..+.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999998876532 1237789999999999999999999998
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. +..++..+.
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP---YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH---HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch---HHHHHHHHH
Confidence 8889999999999987766666667899999999999999988777 789999999999999987652 233221110
Q ss_pred CCCCCCCCchhhhHHHHHhhh-ccccCcceEEEEEccCChH--------HHH---HHHH------------------hcC
Q psy6409 1584 VTNLKPDTEDAEDENKLLANY-NSKKKYRQTVMFTATMPPA--------VER---LARS------------------YLR 1633 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~q~v~~SATl~~~--------~~~---~~~~------------------~l~ 1633 (1832)
.... .......+++++|||++.. ... +... +..
T Consensus 154 -----------------~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 216 (555)
T 3tbk_A 154 -----------------DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVY 216 (555)
T ss_dssp -----------------HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCC
T ss_pred -----------------HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcC
Confidence 0000 1112457899999999542 111 1111 111
Q ss_pred CCcEEEEcccCCCCcceEE--------------------------------------EE---------------------
Q psy6409 1634 RPATVYIGSVGKPTERIEQ--------------------------------------IV--------------------- 1654 (1832)
Q Consensus 1634 ~p~~v~i~~~~~~~~~i~q--------------------------------------~~--------------------- 1654 (1832)
.|................. ..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (555)
T 3tbk_A 217 KPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRV 296 (555)
T ss_dssp CCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHH
T ss_pred CCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHH
Confidence 1111111000000000000 00
Q ss_pred --------------------------------------------------------------------EEcchhhHHHHH
Q psy6409 1655 --------------------------------------------------------------------YILSEQDKRKKL 1666 (1832)
Q Consensus 1655 --------------------------------------------------------------------~~~~~~~k~~~l 1666 (1832)
.......|...+
T Consensus 297 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 376 (555)
T 3tbk_A 297 CKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDL 376 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHH
Confidence 000013355566
Q ss_pred HHHHHh----CCCCcEEEEECchhHHHHHHHHHHHcC------------CcEEEEcCCCCHHHHHHHHHHhhC-CCCcEE
Q psy6409 1667 MEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKLG------------YNACTLHGGKGQEQRELALNSLKG-GSKDIL 1729 (1832)
Q Consensus 1667 ~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~~------------~~v~~lHg~ls~~~R~~il~~F~~-g~~~VL 1729 (1832)
.+++.. ....++||||+++.+++.++..|...+ .+...+||+|++.+|..+++.|++ |+++||
T Consensus 377 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 456 (555)
T 3tbk_A 377 YLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNIL 456 (555)
T ss_dssp HHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEE
T ss_pred HHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEE
Confidence 666654 456899999999999999999999863 355566779999999999999999 999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHH
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~ 1788 (1832)
|||+++++|||+|+|++||+||+|.|+.+|+||+|| ||. +.|.+++|+++.+.....
T Consensus 457 vaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 457 IATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp EECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred EEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999999999999999999999999999 998 899999999987654433
No 65
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2e-38 Score=429.82 Aligned_cols=336 Identities=19% Similarity=0.242 Sum_probs=213.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999998876532 12377899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i 392 (797)
T 4a2q_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (797)
T ss_dssp HHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHH
T ss_pred HHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987776666777899999999999999988777 789999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-----------HHHHHH------------------H
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 1629 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-----------~~~~~~------------------~ 1629 (1832)
+..+. ...........+++++|||++. .+..++ .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~ 455 (797)
T 4a2q_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (797)
T ss_dssp HHHHH-----------------HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHH
T ss_pred HHHHH-----------------HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHH
Confidence 32211 0111112355789999999952 222221 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--EE--------Ec------------------
Q psy6409 1630 SYLRRPATVYIGSVGKPTER------------------------IEQI--VY--------IL------------------ 1657 (1832)
Q Consensus 1630 ~~l~~p~~v~i~~~~~~~~~------------------------i~q~--~~--------~~------------------ 1657 (1832)
.++..|....+......... +... .. ++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (797)
T 4a2q_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (797)
T ss_dssp HHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHH
T ss_pred HhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchh
Confidence 12222222111110000000 0000 00 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 1658 --------------------------------------------------------------------------SEQDKR 1663 (1832)
Q Consensus 1658 --------------------------------------------------------------------------~~~~k~ 1663 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (797)
T 4a2q_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHH
Confidence 012355
Q ss_pred HHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCC
Q psy6409 1664 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1726 (1832)
Q Consensus 1664 ~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~ 1726 (1832)
..|..++.. ....++||||+++.+++.|+..|... |.++..+||+|++.+|..+++.|++ |++
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 556666654 56689999999999999999999873 5677788999999999999999999 999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 999999999999999999999999999999999999999 998 88999999988754
No 66
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.2e-38 Score=429.58 Aligned_cols=309 Identities=19% Similarity=0.260 Sum_probs=248.4
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
++| +|+|+|.++|+.++.|+|+|++||||||||++|++|+...+ ..++++||++|+++|+.|++..+
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~------------~~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH------------RNMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH------------HTTCEEEEEESCGGGHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH------------hcCCeEEEEeCCHHHHHHHHHHH
Confidence 466 48999999999999999999999999999999999998654 24678999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
.++.. ++.+..++|+.... ..++|+|+||++|.+.+.+....+.++++|||||||++.+++|+..+..++.
T Consensus 103 ~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHH
T ss_pred HHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHH
Confidence 98753 67899999987643 3589999999999999988877889999999999999999999999999998
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcC---CCcEEEEcccCCCCcceEEEEE--
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR---RPATVYIGSVGKPTERIEQIVY-- 980 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~---~p~~v~~~~~~~~~~~i~q~~~-- 980 (1832)
.++ ...|++++|||+|+.. .++..+.. .+..+.... ..+ ..+.+.+.
T Consensus 174 ~l~-------------------------~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~-~r~-~pl~~~v~~~ 225 (997)
T 4a4z_A 174 MLP-------------------------QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTP-KRP-VPLEINIWAK 225 (997)
T ss_dssp HSC-------------------------TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECS-SCS-SCEEEEEEET
T ss_pred hcc-------------------------cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecC-CCC-ccceEEEecC
Confidence 875 2479999999998755 45544321 222222211 111 11111111
Q ss_pred --------------------------------------------------------------------------------
Q psy6409 981 -------------------------------------------------------------------------------- 980 (1832)
Q Consensus 981 -------------------------------------------------------------------------------- 980 (1832)
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~ 305 (997)
T 4a4z_A 226 KELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGA 305 (997)
T ss_dssp TEEEEEECTTCCBCHHHHHHHHHHHC------------------------------------------------------
T ss_pred CcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------EcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCC------------------------
Q psy6409 981 -----------ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY------------------------ 1025 (1832)
Q Consensus 981 -----------~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~------------------------ 1025 (1832)
......+...++..+......++||||++++.|+.++..|...++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 385 (997)
T 4a4z_A 306 IGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKED 385 (997)
T ss_dssp -----------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhh
Confidence 001223456777777777778999999999999999999976555
Q ss_pred ---------------cEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC---------CH
Q psy6409 1026 ---------------NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK---------SI 1081 (1832)
Q Consensus 1026 ---------------~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~---------s~ 1081 (1832)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++.+ |+++.|+ |.
T Consensus 386 ~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~ 464 (997)
T 4a4z_A 386 RDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTP 464 (997)
T ss_dssp HTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCH
T ss_pred hcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCH
Confidence 5899999999999999999999999999999999999999999554 5444544 99
Q ss_pred hHHHHHhcccccCC--CCcEEEEEec
Q psy6409 1082 EDYTHRIGRTGRAG--KEGLAVSFCT 1105 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g--~~G~ai~~~~ 1105 (1832)
.+|+||+|||||.| ..|.|++++.
T Consensus 465 ~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 465 GEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999998 4588888874
No 67
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-37 Score=424.71 Aligned_cols=310 Identities=19% Similarity=0.267 Sum_probs=247.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.++| .|+|+|.++|+.++.|+|++++||||||||++|++|++..+. .+.++||++|+++|+.|+++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHHHH
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHH
Confidence 3566 589999999999999999999999999999999999986542 367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.+++. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|+..+..++
T Consensus 102 l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 102 FKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp HHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 998753 67888999987643 348999999999999998888888999999999999999999999999999
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhc---CCCcEEEEcccCCCCcceEEEEE-
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL---RRPATVYIGSVGKPTERIEQIVY- 1655 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l---~~p~~v~i~~~~~~~~~i~q~~~- 1655 (1832)
..++ ...+++++|||+++..+ +...+. ..+..+ +.....+. .+.+.+.
T Consensus 173 ~~l~-------------------------~~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~v-i~~~~r~~-pl~~~v~~ 224 (997)
T 4a4z_A 173 IMLP-------------------------QHVKFILLSATVPNTYE-FANWIGRTKQKNIYV-ISTPKRPV-PLEINIWA 224 (997)
T ss_dssp HHSC-------------------------TTCEEEEEECCCTTHHH-HHHHHHHHHTCCEEE-EECSSCSS-CEEEEEEE
T ss_pred Hhcc-------------------------cCCCEEEEcCCCCChHH-HHHHHhcccCCceEE-EecCCCCc-cceEEEec
Confidence 8876 34789999999987753 333222 122222 11111111 1111111
Q ss_pred --------------------------------------------------------------------------------
Q psy6409 1656 -------------------------------------------------------------------------------- 1655 (1832)
Q Consensus 1656 -------------------------------------------------------------------------------- 1655 (1832)
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~ 304 (997)
T 4a4z_A 225 KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAG 304 (997)
T ss_dssp TTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------------------------
T ss_pred CCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------EcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCC-----------------------
Q psy6409 1656 ------------ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY----------------------- 1700 (1832)
Q Consensus 1656 ------------~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~----------------------- 1700 (1832)
......+...+...+......++||||++++.|+.++..|...++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 384 (997)
T 4a4z_A 305 AIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKE 384 (997)
T ss_dssp ------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred cccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchh
Confidence 001223455677777777778999999999999999999976555
Q ss_pred ----------------cEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCC---------CC
Q psy6409 1701 ----------------NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMA---------KS 1755 (1832)
Q Consensus 1701 ----------------~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P---------~s 1755 (1832)
++..|||+|++.+|..+++.|++|.++|||||+++++|||+|++. ||+++.| .|
T Consensus 385 d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s 463 (997)
T 4a4z_A 385 DRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELT 463 (997)
T ss_dssp HHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECC
T ss_pred hhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCC
Confidence 689999999999999999999999999999999999999999955 5544444 49
Q ss_pred HHHHHHHhcccccCC--CccEEEEEee
Q psy6409 1756 IEDYTHRIGRTGRAG--KEGLAVSFCT 1780 (1832)
Q Consensus 1756 ~~~yiQRiGRaGR~g--~~G~ai~~~~ 1780 (1832)
..+|+||+|||||.| ..|.+++++.
T Consensus 464 ~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 464 PGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHhHHhcccccCCCCcceEEEEecC
Confidence 999999999999988 5678888774
No 68
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.6e-37 Score=393.57 Aligned_cols=343 Identities=20% Similarity=0.256 Sum_probs=269.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
.+|+ .|+|+|..++|.++.|+ |+.++||+|||++|.+|++.... .+..|+||+||++||.|++.+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHHHH
Confidence 3798 99999999999999998 99999999999999999975432 256799999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHcc------ccccCCceeEEEccchhhh-cC--
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENR------YLVLNQCTYIVLDEADRMI-DM-- 1569 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~------~~~l~~v~llViDEaH~ll-~~-- 1569 (1832)
+..++..+|+++.+++||.+..... ...+++|+|+||++| .++|..+ .+.+..+.++||||||.|+ +.
T Consensus 172 m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 172 MGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 9999999999999999999865443 334699999999999 7888764 3667899999999999998 43
Q ss_pred -------------CChHHHHHHHHhCCCC---------C-C------------------CCCCchh---hhHH-HHHhh-
Q psy6409 1570 -------------GFEPDVQKILEYMPVT---------N-L------------------KPDTEDA---EDEN-KLLAN- 1603 (1832)
Q Consensus 1570 -------------gf~~~l~~Il~~l~~~---------~-~------------------~~~~~~~---~~~~-~l~~~- 1603 (1832)
+|...+..|+..++.. . . ....... .... .+.+.
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 4778899999988720 0 0 0000000 0000 00000
Q ss_pred --------------------------------------------h---------------ccccCcceEEEEEccCChHH
Q psy6409 1604 --------------------------------------------Y---------------NSKKKYRQTVMFTATMPPAV 1624 (1832)
Q Consensus 1604 --------------------------------------------~---------------~~~~~~~q~v~~SATl~~~~ 1624 (1832)
+ +....+..+.++|+|.....
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 0 00011235678888888777
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEE-EEEEcchhhHHHHHHHHHHh--CCCCcEEEEECchhHHHHHHHHHHHcCCc
Q psy6409 1625 ERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYN 1701 (1832)
Q Consensus 1625 ~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~~~a~~l~~~L~~~~~~ 1701 (1832)
..+...|--+ .+ +-+...+.....+ .+.+.....|...++..+.. ....|+||||+|+..++.|+..|...|++
T Consensus 410 ~Ef~~iY~l~--vv-~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~ 486 (922)
T 1nkt_A 410 AELHEIYKLG--VV-SIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP 486 (922)
T ss_dssp HHHHHHHCCE--EE-ECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCC--eE-EeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC
Confidence 7776666432 23 3344555544433 24456778888888887754 25679999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------------------------
Q psy6409 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV------------------------------------- 1744 (1832)
Q Consensus 1702 v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v------------------------------------- 1744 (1832)
+.++||.+.+.++..+.+.|+.| .|+|||++++||+||+.+
T Consensus 487 ~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (922)
T 1nkt_A 487 HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVK 564 (922)
T ss_dssp CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Confidence 99999999888888888899888 699999999999999975
Q ss_pred ---------------CEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1745 ---------------SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1745 ---------------~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
.+||+|+.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 565 ~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 565 EEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 69
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.8e-38 Score=431.00 Aligned_cols=336 Identities=19% Similarity=0.243 Sum_probs=213.9
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|+...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987653311 12367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccc-ccCCceeEEEecchhhhcCCChHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 903 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~-~l~~~~~lViDEaH~l~d~gf~~~i~~I 903 (1832)
+++++...++++..++||.....+...+..+++|+|+||++|.+.+.++.+ .+..+++|||||||++...+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i 392 (936)
T 4a2w_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (936)
T ss_dssp HHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHH
T ss_pred HHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987766666667899999999999999988776 788999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-----------HHHHHH------------------H
Q psy6409 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 954 (1832)
Q Consensus 904 l~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-----------~v~~~~------------------~ 954 (1832)
+..+. ...........+++++|||++. .+..+. .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~ 455 (936)
T 4a2w_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (936)
T ss_dssp HHHHH-----------------HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred HHHHH-----------------HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH
Confidence 32221 0011112345789999999852 121111 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEEE--E--------Ec------------------
Q psy6409 955 SYLRRPATVYIGSVGKPTER------------------------IEQIV--Y--------IL------------------ 982 (1832)
Q Consensus 955 ~~l~~p~~v~~~~~~~~~~~------------------------i~q~~--~--------~~------------------ 982 (1832)
.++..|.............. +.+.. . ++
T Consensus 456 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~ 535 (936)
T 4a2w_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (936)
T ss_dssp HHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHH
T ss_pred HhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchh
Confidence 22233332221111000000 00000 0 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 983 --------------------------------------------------------------------------SEQDKR 988 (1832)
Q Consensus 983 --------------------------------------------------------------------------~~~~k~ 988 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (936)
T 4a2w_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHH
Confidence 013355
Q ss_pred HHHHHHHHc----CCCCCEEEEEcccchHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHHhC-CCC
Q psy6409 989 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1051 (1832)
Q Consensus 989 ~~L~~~l~~----~~~~~vIVFv~s~~~~~~l~~~L~~~------------g~~v~~lhg~~~~~~R~~il~~F~~-G~~ 1051 (1832)
..|.++|.. ..+.++||||+++..++.++..|... |..+..+||+|++.+|..+++.|++ |.+
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~ 695 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCe
Confidence 666667764 35679999999999999999999986 6667778999999999999999999 999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.++.|++..+.
T Consensus 696 ~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999 998 67999999988653
No 70
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-36 Score=388.65 Aligned_cols=318 Identities=24% Similarity=0.296 Sum_probs=246.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
+|+|+|.++++.++.+ ++|+++|||+|||++|+++++..+. ..+.++|||+|+++|+.|+.+.+.+++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-----------~~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-----------KYGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-----------HSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-----------cCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999999 9999999999999999999987653 246789999999999999999999987
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
...+..+..++|+....... .+...++|+|+||++|.+.+..+.+.+..+++|||||||++.+......+...+..
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~--- 152 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR--- 152 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHH---
T ss_pred CcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHh---
Confidence 54455888999988765433 33447899999999999999888888999999999999998764333222222221
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHH---HHHHhcCCCcEEEEcccCCC-------CcceEEEE
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER---LARSYLRRPATVYIGSVGKP-------TERIEQIV 979 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~---~~~~~l~~p~~v~~~~~~~~-------~~~i~q~~ 979 (1832)
.....+++++|||++..... +...+...+ +........ ........
T Consensus 153 ----------------------~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
T 1wp9_A 153 ----------------------QAKNPLVIGLTASPGSTPEKIMEVINNLGIEH--IEYRSENSPDVRPYVKGIRFEWVR 208 (494)
T ss_dssp ----------------------HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCE--EEECCTTSTTTGGGCCCCCEEEEE
T ss_pred ----------------------cCCCCeEEEEecCCCCCcHHHHHHHHhcChhe--eeccCCCcHHHHHhcCCCceeEEe
Confidence 12346899999999744333 332221111 111000000 00000000
Q ss_pred EE------------------------------------------------------------------------------
Q psy6409 980 YI------------------------------------------------------------------------------ 981 (1832)
Q Consensus 980 ~~------------------------------------------------------------------------------ 981 (1832)
..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
T 1wp9_A 209 VDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIEL 288 (494)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------cchhhHHHHHHHHHHc----CCCCCEEEEE
Q psy6409 982 --------------------------------------------------LSEQDKRKKLMEVLNR----GVKKPVIIFV 1007 (1832)
Q Consensus 982 --------------------------------------------------~~~~~k~~~L~~~l~~----~~~~~vIVFv 1007 (1832)
.....|...|.+++.. ..+.++||||
T Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 368 (494)
T 1wp9_A 289 LETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368 (494)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0223456666777765 4678999999
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC
Q psy6409 1008 NQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079 (1832)
Q Consensus 1008 ~s~~~~~~l~~~L~~~g~~v~~lhg--------~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~ 1079 (1832)
+++..++.+++.|...|+.+..+|| +|+..+|..+++.|++|.++|||||+++++|||+|++++||+||+|.
T Consensus 369 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~ 448 (494)
T 1wp9_A 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 448 (494)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH
T ss_pred ccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1080 s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++..|+||+||+||.|. |.++.|+++++
T Consensus 449 ~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 449 SAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp HHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred CHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 99999999999999998 99999999985
No 71
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-37 Score=425.27 Aligned_cols=336 Identities=19% Similarity=0.242 Sum_probs=213.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1420 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1420 ~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
-.|+..|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+ ...++++|||+||++|+.|++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999987654321 12367899999999999999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcccc-ccCCceeEEEccchhhhcCCChHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKI 1578 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~-~l~~v~llViDEaH~ll~~gf~~~l~~I 1578 (1832)
+++++...++++..++|+.+...+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++...+. +..+
T Consensus 316 ~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~---~~~i 392 (936)
T 4a2w_A 316 FKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVL 392 (936)
T ss_dssp HHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH---HHHH
T ss_pred HHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc---HHHH
Confidence 999988889999999999987766666666799999999999999988776 788999999999999887542 3333
Q ss_pred HHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-----------HHHHHH------------------H
Q psy6409 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-----------AVERLA------------------R 1629 (1832)
Q Consensus 1579 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-----------~~~~~~------------------~ 1629 (1832)
+..+. ...........+++++|||+.. .+..++ .
T Consensus 393 ~~~~~-----------------~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~ 455 (936)
T 4a2w_A 393 MTRYL-----------------EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQ 455 (936)
T ss_dssp HHHHH-----------------HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred HHHHH-----------------HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHH
Confidence 32221 0011112355789999999952 111111 1
Q ss_pred HhcCCCcEEEEcccCCCCcc------------------------eEEE--EE--------Ec------------------
Q psy6409 1630 SYLRRPATVYIGSVGKPTER------------------------IEQI--VY--------IL------------------ 1657 (1832)
Q Consensus 1630 ~~l~~p~~v~i~~~~~~~~~------------------------i~q~--~~--------~~------------------ 1657 (1832)
.++..|.............. +.+. .. ++
T Consensus 456 ~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~ 535 (936)
T 4a2w_A 456 RFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEE 535 (936)
T ss_dssp HHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHH
T ss_pred HhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchh
Confidence 22233332221111000000 0000 00 00
Q ss_pred --------------------------------------------------------------------------chhhHH
Q psy6409 1658 --------------------------------------------------------------------------SEQDKR 1663 (1832)
Q Consensus 1658 --------------------------------------------------------------------------~~~~k~ 1663 (1832)
....|.
T Consensus 536 ~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~ 615 (936)
T 4a2w_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKL 615 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHH
Confidence 012355
Q ss_pred HHHHHHHHh----CCCCcEEEEECchhHHHHHHHHHHHc------------CCcEEEEcCCCCHHHHHHHHHHhhC-CCC
Q psy6409 1664 KKLMEVLNR----GVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKGQEQRELALNSLKG-GSK 1726 (1832)
Q Consensus 1664 ~~l~~~l~~----~~~~~vIVFv~s~~~a~~l~~~L~~~------------~~~v~~lHg~ls~~~R~~il~~F~~-g~~ 1726 (1832)
..|.++|.. ....++||||+++..++.|+..|... |.++..+||+|++.+|..+++.|++ |++
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~ 695 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCe
Confidence 556666654 35689999999999999999999986 6667778999999999999999999 999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|||||+++++|||+|+|++||+||+|.|+..|+||+|| ||. ..|.+++|++..+.
T Consensus 696 ~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 696 RLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp SEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred eEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 999999999999999999999999999999999999999 998 78999999987643
No 72
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-36 Score=386.35 Aligned_cols=320 Identities=24% Similarity=0.298 Sum_probs=247.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.+ ++|+++|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+++.+++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999999 99999999999999999999876641 36679999999999999999999987
Q ss_pred CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCC
Q psy6409 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584 (1832)
Q Consensus 1505 ~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~ 1584 (1832)
...+.++..++|+...... ..+..+++|+|+||+.+...+....+.+.++++|||||||++.+......+...+...
T Consensus 77 ~~~~~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~-- 153 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ-- 153 (494)
T ss_dssp CSCGGGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc--
Confidence 5445588889998876643 3334468999999999999998888889999999999999987653332222222211
Q ss_pred CCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHH---HHHHhcCCCcEEEEcccCCC-------CcceEEEE
Q psy6409 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER---LARSYLRRPATVYIGSVGKP-------TERIEQIV 1654 (1832)
Q Consensus 1585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~---~~~~~l~~p~~v~i~~~~~~-------~~~i~q~~ 1654 (1832)
....+++++|||+...... ++..+... .+........ ...+....
T Consensus 154 -----------------------~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
T 1wp9_A 154 -----------------------AKNPLVIGLTASPGSTPEKIMEVINNLGIE--HIEYRSENSPDVRPYVKGIRFEWVR 208 (494)
T ss_dssp -----------------------CSSCCEEEEESCSCSSHHHHHHHHHHTTCC--EEEECCTTSTTTGGGCCCCCEEEEE
T ss_pred -----------------------CCCCeEEEEecCCCCCcHHHHHHHHhcChh--eeeccCCCcHHHHHhcCCCceeEEe
Confidence 2346899999999854333 33222111 1111000000 00000000
Q ss_pred EEc-----------------------------------------------------------------------------
Q psy6409 1655 YIL----------------------------------------------------------------------------- 1657 (1832)
Q Consensus 1655 ~~~----------------------------------------------------------------------------- 1657 (1832)
...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
T 1wp9_A 209 VDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIEL 288 (494)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Confidence 000
Q ss_pred ---------------------------------------------------chhhHHHHHHHHHHh----CCCCcEEEEE
Q psy6409 1658 ---------------------------------------------------SEQDKRKKLMEVLNR----GVKKPVIIFV 1682 (1832)
Q Consensus 1658 ---------------------------------------------------~~~~k~~~l~~~l~~----~~~~~vIVFv 1682 (1832)
....|...+.+++.. ....++||||
T Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 368 (494)
T 1wp9_A 289 LETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFT 368 (494)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 122355666666665 4688999999
Q ss_pred CchhHHHHHHHHHHHcCCcEEEEcC--------CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC
Q psy6409 1683 NQKKGADVLAKGLEKLGYNACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754 (1832)
Q Consensus 1683 ~s~~~a~~l~~~L~~~~~~v~~lHg--------~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~ 1754 (1832)
+++..++.++..|...|+.+..+|| +++..+|..+++.|++|+++|||||+++++|||+|++++||+||+|+
T Consensus 369 ~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~ 448 (494)
T 1wp9_A 369 NYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVP 448 (494)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCH
T ss_pred ccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccccCCCccEEEEEeeCCChh
Q psy6409 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785 (1832)
Q Consensus 1755 s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~ 1785 (1832)
|+..|+||+||+||.|+ |.++.|+++.+.+
T Consensus 449 ~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 449 SAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred CHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999998 9999999998643
No 73
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-37 Score=409.14 Aligned_cols=326 Identities=21% Similarity=0.266 Sum_probs=245.1
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHcC------CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEE
Q psy6409 737 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810 (1832)
Q Consensus 737 ~~l~~~l~~~g~~~pt~iQ~~ai~~il~g------rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Li 810 (1832)
+.+.+.+..+|| +||++|.++|+.++.+ .|+|++||||||||++|++|++..+. .+.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------------~g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------------AGFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH------------HTSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH------------cCCeEEE
Confidence 355566688999 9999999999999875 58999999999999999999998763 2678999
Q ss_pred EccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhcC-CceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 811 laPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~~-~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
|+||++||.|+++.+.+++..+|+++..++|+....+.. ..+..+ ++|+|+||+.+.+ .+.+.++++||||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVID 497 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIID 497 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEec
Confidence 999999999999999999988999999999999866543 334444 9999999997743 4568899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEc
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|||++.... . .. +.......+++++|||+++....+ .+..+.....+.
T Consensus 498 EaHr~g~~q-----r---~~----------------------l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~ 545 (780)
T 1gm5_A 498 EQHRFGVKQ-----R---EA----------------------LMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVID 545 (780)
T ss_dssp SCCCC-------------CC----------------------CCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEEC
T ss_pred ccchhhHHH-----H---HH----------------------HHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeee
Confidence 999853110 0 00 011123578999999987654433 333333222232
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEccc--------chHHHHHHHHHH---cCCcEEEEcCC
Q psy6409 967 SVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEK---LGYNACTLHGG 1033 (1832)
Q Consensus 967 ~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~--------~~~~~l~~~L~~---~g~~v~~lhg~ 1033 (1832)
........+...+ . ...+...+.+.+.. ..+.+++|||++. ..++.+++.|.. .++.+..+||+
T Consensus 546 ~~p~~r~~i~~~~--~-~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 546 EMPPGRKEVQTML--V-PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp CCCSSCCCCEECC--C-CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSS
T ss_pred ccCCCCcceEEEE--e-ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCC
Confidence 2211112222221 1 12223334444432 3467899999966 457888888887 47889999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCC-CHhHHHHHhcccccCCCCcEEEEEecCCCchHH
Q psy6409 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112 (1832)
Q Consensus 1034 ~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~-s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~ 1112 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|++++||++++|. +...|.||+|||||.|..|.|++++++.+....
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 9999999999999999999999999999999999999999999996 789999999999999999999999985443333
Q ss_pred HHH
Q psy6409 1113 YDL 1115 (1832)
Q Consensus 1113 ~~l 1115 (1832)
..+
T Consensus 703 ~rl 705 (780)
T 1gm5_A 703 ERL 705 (780)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 74
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=419.09 Aligned_cols=339 Identities=21% Similarity=0.246 Sum_probs=228.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH-HHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI-EEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi-~~~~~~ 827 (1832)
.+|+|+|.++++.++.|+|+|+++|||||||++|++|++..+...+. ...+.++|||+|+++|+.|+ .+.+++
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999987754221 23457899999999999999 999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHH------HccccccCCceeEEEecchhhhcCCChH-HH
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL------ENRYLVLNQCTYIVLDEADRMIDMGFEP-DV 900 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l------~~~~~~l~~~~~lViDEaH~l~d~gf~~-~i 900 (1832)
++.. ++++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++...++.. .+
T Consensus 80 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 80 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred HcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 8765 58999999998877666666678999999999999888 4445678899999999999986543322 22
Q ss_pred HHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH-----------HHHHHHHh-------------
Q psy6409 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-----------VERLARSY------------- 956 (1832)
Q Consensus 901 ~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~-----------v~~~~~~~------------- 956 (1832)
...+.... ................+++++|||++.. +..+...+
T Consensus 159 ~~~l~~~~------------~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~ 226 (699)
T 4gl2_A 159 RHYLMQKL------------KNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLD 226 (699)
T ss_dssp HHHHHHHH------------HHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHH
T ss_pred HHHHHhhh------------cccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchH
Confidence 22221100 0000000000111446899999999862 12222111
Q ss_pred -----cCCCcEEEEcccCCCC-----------------------cceE-----E--------------------------
Q psy6409 957 -----LRRPATVYIGSVGKPT-----------------------ERIE-----Q-------------------------- 977 (1832)
Q Consensus 957 -----l~~p~~v~~~~~~~~~-----------------------~~i~-----q-------------------------- 977 (1832)
...|............ .... +
T Consensus 227 ~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (699)
T 4gl2_A 227 QLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 306 (699)
T ss_dssp HHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHH
T ss_pred HHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1222211110000000 0000 0
Q ss_pred ----------------------------------------EEEEcc--------------------------hhhHHHHH
Q psy6409 978 ----------------------------------------IVYILS--------------------------EQDKRKKL 991 (1832)
Q Consensus 978 ----------------------------------------~~~~~~--------------------------~~~k~~~L 991 (1832)
....+. ...|...|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L 386 (699)
T 4gl2_A 307 YNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKL 386 (699)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 000000 01112222
Q ss_pred HHHHHc----CC-CCCEEEEEcccchHHHHHHHHHHc------CCcEEEEcCC--------CCHHHHHHHHHHHhCCCCc
Q psy6409 992 MEVLNR----GV-KKPVIIFVNQKKGADVLAKGLEKL------GYNACTLHGG--------KGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 992 ~~~l~~----~~-~~~vIVFv~s~~~~~~l~~~L~~~------g~~v~~lhg~--------~~~~~R~~il~~F~~G~~~ 1052 (1832)
.++|.. .. +.++||||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+++
T Consensus 387 ~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~ 466 (699)
T 4gl2_A 387 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 466 (699)
T ss_dssp HHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---C
T ss_pred HHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCc
Confidence 333332 23 789999999999999999999987 8999999999 9999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
|||||+++++|||+|+|++||+||+|.|+.+|+||+|||||.| +.+++++..++
T Consensus 467 VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 467 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999999999999999999999987754 44444444443
No 75
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=413.33 Aligned_cols=335 Identities=21% Similarity=0.244 Sum_probs=226.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH-HHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI-EEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi-~~~~~~~ 1503 (1832)
.|+|+|.++++.++.|+|+|+++|||||||++|++|++.++...+. ...+.++|||+|+++|+.|+ .+.++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH------HTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------cCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999987765321 12347799999999999999 9999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHH------HccccccCCceeEEEccchhhhcCCChH-HHH
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL------ENRYLVLNQCTYIVLDEADRMIDMGFEP-DVQ 1576 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l------~~~~~~l~~v~llViDEaH~ll~~gf~~-~l~ 1576 (1832)
+.. ++++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++.. .+.
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 765 58899999998876655566678999999999999888 4455778899999999999986544322 222
Q ss_pred HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH--------H---HHHHHH---------------
Q psy6409 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------V---ERLARS--------------- 1630 (1832)
Q Consensus 1577 ~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~--------~---~~~~~~--------------- 1630 (1832)
..+.... ...............++++++|||++.. . ..+...
T Consensus 160 ~~l~~~~------------~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~ 227 (699)
T 4gl2_A 160 HYLMQKL------------KNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQ 227 (699)
T ss_dssp HHHHHHH------------HHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHH
T ss_pred HHHHhhh------------cccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHH
Confidence 2211100 0000000000111446899999999862 1 112111
Q ss_pred ---hcCCCcEEEEcccCCCC-----------------------cceE-----E---------------------------
Q psy6409 1631 ---YLRRPATVYIGSVGKPT-----------------------ERIE-----Q--------------------------- 1652 (1832)
Q Consensus 1631 ---~l~~p~~v~i~~~~~~~-----------------------~~i~-----q--------------------------- 1652 (1832)
+...|............ .... +
T Consensus 228 l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (699)
T 4gl2_A 228 LKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKY 307 (699)
T ss_dssp HHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHH
T ss_pred HhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 11122211110000000 0000 0
Q ss_pred ---------------------------------------EEEEcc--------------------------hhhHHHHHH
Q psy6409 1653 ---------------------------------------IVYILS--------------------------EQDKRKKLM 1667 (1832)
Q Consensus 1653 ---------------------------------------~~~~~~--------------------------~~~k~~~l~ 1667 (1832)
...... ...|...|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~ 387 (699)
T 4gl2_A 308 NEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLR 387 (699)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 000000 001111222
Q ss_pred HHHHh----CC-CCcEEEEECchhHHHHHHHHHHHc------CCcEEEEcCC--------CCHHHHHHHHHHhhCCCCcE
Q psy6409 1668 EVLNR----GV-KKPVIIFVNQKKGADVLAKGLEKL------GYNACTLHGG--------KGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1668 ~~l~~----~~-~~~vIVFv~s~~~a~~l~~~L~~~------~~~v~~lHg~--------ls~~~R~~il~~F~~g~~~V 1728 (1832)
+++.. .+ ..++||||+++..++.|+..|... |+.+..+||+ |++.+|..+++.|++|+++|
T Consensus 388 ~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~V 467 (699)
T 4gl2_A 388 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINL 467 (699)
T ss_dssp HHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CC
T ss_pred HHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcE
Confidence 33322 23 789999999999999999999987 8999999999 99999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
||||+++++|||+|+|++||+||+|.|+.+|+||+|||||.| .+++|+..
T Consensus 468 LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 468 LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999999999999999999987654 44444444
No 76
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.2e-38 Score=409.94 Aligned_cols=315 Identities=18% Similarity=0.134 Sum_probs=235.6
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc
Q psy6409 733 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812 (1832)
Q Consensus 733 ~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila 812 (1832)
+++++.++++|... +..|+|+|+.++|.++.|+|+|++||||||||++|++|++..+.. .++++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 45666666666543 588999999999999999999999999999999999999987632 367899999
Q ss_pred cchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 813 PtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|||+||.|+.+.+.. ..+. +.++.. . .....+..+.++|.+.+...+... ..+.++++|||||||+|
T Consensus 223 PtreLa~Qi~~~l~~------~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 223 PTRVVAAEMEEALRG------LPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp SSHHHHHHHHHHTTT------SCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred ChHHHHHHHHHHhcC------Ccee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 999999999988763 2233 222110 0 011124567778888877665544 35899999999999988
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 972 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~ 972 (1832)
+.+|...+..|+..++ ....|+++||||+|..+..++. .++..+.+.... +.
T Consensus 290 ~~~~~~~~~~i~~~l~------------------------~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~ 341 (618)
T 2whx_A 290 DPCSVAARGYISTRVE------------------------MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE 341 (618)
T ss_dssp SHHHHHHHHHHHHHHH------------------------HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS
T ss_pred CccHHHHHHHHHHHhc------------------------ccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH
Confidence 7777777777776542 1347999999999876543222 234433332211 10
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 973 ~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
. +...++..+.. ..+++||||++++.|+.+++.|...++.+..+||. +|..+++.|++|+++
T Consensus 342 ~-------------~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~ 403 (618)
T 2whx_A 342 R-------------SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD 403 (618)
T ss_dssp S-------------CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS
T ss_pred H-------------HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE
Confidence 0 01122333333 36689999999999999999999999999999984 788899999999999
Q ss_pred EEEecccccccCCCcCcCEE--------------------EEcCCCCCHhHHHHHhcccccCCC-CcEEEEEec---CCC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMV--------------------INYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT---KDD 1108 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~V--------------------I~~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~---~~d 1108 (1832)
|||||+++++|||+| |++| |+|++|.+.++|+||+|||||.|. .|.|++|++ ++|
T Consensus 404 VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d 482 (618)
T 2whx_A 404 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKND 482 (618)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhh
Confidence 999999999999998 9988 788889999999999999999965 799999998 777
Q ss_pred chHHHHHHHHH
Q psy6409 1109 SHLFYDLKQMM 1119 (1832)
Q Consensus 1109 ~~~~~~l~~~l 1119 (1832)
..++..++..+
T Consensus 483 ~~~l~~le~~i 493 (618)
T 2whx_A 483 EDHAHWTEAKM 493 (618)
T ss_dssp TTCHHHHHHHH
T ss_pred HHHHHHHHhHh
Confidence 77777766543
No 77
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-36 Score=401.79 Aligned_cols=323 Identities=21% Similarity=0.263 Sum_probs=244.1
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEE
Q psy6409 1412 TEILEIIEKIGYAEPTPIQRQAIPIGLQN------RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485 (1832)
Q Consensus 1412 ~~ll~~l~~~g~~~ptpiQ~~ai~~il~g------~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLi 1485 (1832)
+.+...+..++| .|||+|.++++.++.+ .|++++||||||||++|++|++..+.. +.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 556667788999 9999999999999865 599999999999999999999987643 678999
Q ss_pred EcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeEEEc
Q psy6409 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1486 LaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~llViD 1561 (1832)
|+||++||.|+++.+.+++..+++++..++|+.+..... ..+.. .++|+|+||+.+.+ .+.+.++++||||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVID 497 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIID 497 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEec
Confidence 999999999999999999988899999999998876532 23444 48999999987743 4568899999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEc
Q psy6409 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641 (1832)
Q Consensus 1562 EaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~ 1641 (1832)
|||++.... . ..+ .......+++++|||+.+...... +..+.....+.
T Consensus 498 EaHr~g~~q-----r---~~l----------------------~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~ 545 (780)
T 1gm5_A 498 EQHRFGVKQ-----R---EAL----------------------MNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVID 545 (780)
T ss_dssp SCCCC-------------CCC----------------------CSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEEC
T ss_pred ccchhhHHH-----H---HHH----------------------HHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeee
Confidence 999862110 0 000 111235789999999877654433 22222222222
Q ss_pred ccCCCCcceEEEEEEcchhhHHHHHHHHHHh--CCCCcEEEEECch--------hHHHHHHHHHHH---cCCcEEEEcCC
Q psy6409 1642 SVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQK--------KGADVLAKGLEK---LGYNACTLHGG 1708 (1832)
Q Consensus 1642 ~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~--~~~~~vIVFv~s~--------~~a~~l~~~L~~---~~~~v~~lHg~ 1708 (1832)
........+...+ ....+...+...+.. ....+++|||+++ ..++.++..|.. .++.+..+||+
T Consensus 546 ~~p~~r~~i~~~~---~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 546 EMPPGRKEVQTML---VPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp CCCSSCCCCEECC---CCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSS
T ss_pred ccCCCCcceEEEE---eccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCC
Confidence 1111111222211 122233444444433 2467899999976 457888888887 47889999999
Q ss_pred CCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCC-CHHHHHHHhcccccCCCccEEEEEeeCCChhHH
Q psy6409 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK-SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787 (1832)
Q Consensus 1709 ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~-s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~ 1787 (1832)
|++.+|..+++.|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|..|.|++++++.+....
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 9999999999999999999999999999999999999999999996 789999999999999999999999985444333
No 78
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-36 Score=405.37 Aligned_cols=335 Identities=16% Similarity=0.229 Sum_probs=251.1
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcccc
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~ 802 (1832)
+.++..|.++++++.+.+.+...| ..|+++|+++|+.++. |++++++||||||||+ ++|++..... ...
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~-------~~~ 137 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE-------MPH 137 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH-------CGG
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc-------ccc
Confidence 346778999999999999999998 7899999999999886 5689999999999999 6777632111 011
Q ss_pred CCCcEEEEEccchhHHHHHHHHHHHh-cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 803 DQGPYAIIMAPTRELAQQIEEETNKF-GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 803 ~~~~~~LilaPtreLa~Qi~~~~~~~-~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
..+++++|++|+++||.|++..+... +...+..++..+.... .....++|+|+|||++.+.+.... .+.+++
T Consensus 138 ~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~ 210 (773)
T 2xau_A 138 LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMEDH-DLSRYS 210 (773)
T ss_dssp GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHST-TCTTEE
T ss_pred CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhCc-cccCCC
Confidence 23678999999999999998877554 2233333332222111 112468999999999998876653 689999
Q ss_pred eEEEecchh-hhcCCC-hHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCC
Q psy6409 882 YIVLDEADR-MIDMGF-EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959 (1832)
Q Consensus 882 ~lViDEaH~-l~d~gf-~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~ 959 (1832)
+|||||||. +++..+ ...+..+.. .....|++++|||++. +.+...+ .+
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~--------------------------~~~~~~iIl~SAT~~~--~~l~~~~-~~ 261 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVK--------------------------RRPDLKIIIMSATLDA--EKFQRYF-ND 261 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHH--------------------------HCTTCEEEEEESCSCC--HHHHHHT-TS
T ss_pred EEEecCccccccchHHHHHHHHHHHH--------------------------hCCCceEEEEeccccH--HHHHHHh-cC
Confidence 999999995 554221 111222221 1235799999999964 4555544 44
Q ss_pred CcEEEEcccCCCCcceEEEEEEcchhh----HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHH-----------cC
Q psy6409 960 PATVYIGSVGKPTERIEQIVYILSEQD----KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-----------LG 1024 (1832)
Q Consensus 960 p~~v~~~~~~~~~~~i~q~~~~~~~~~----k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~-----------~g 1024 (1832)
+..+.+.... ..+.+.+....... ....+.+++.....+++||||+++..|+.++..|.. .+
T Consensus 262 ~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~ 338 (773)
T 2xau_A 262 APLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP 338 (773)
T ss_dssp CCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 4444433222 22444333333222 334455555555788999999999999999999975 47
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHh-----CCCCcEEEecccccccCCCcCcCEEEEcCC------------------CCCH
Q psy6409 1025 YNACTLHGGKGQEQRELALNSLK-----GGSKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSI 1081 (1832)
Q Consensus 1025 ~~v~~lhg~~~~~~R~~il~~F~-----~G~~~VLVaTdv~~rGlDip~v~~VI~~d~------------------p~s~ 1081 (1832)
+.+..+||+|++.+|..+++.|+ +|..+|||||+++++|||||+|.+||++++ |.|.
T Consensus 339 ~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~ 418 (773)
T 2xau_A 339 LSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK 418 (773)
T ss_dssp EEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCH
T ss_pred eEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCH
Confidence 88999999999999999999999 999999999999999999999999999888 8899
Q ss_pred hHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1082 EDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
++|+||+|||||. ..|.|++|+++++
T Consensus 419 ~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 419 ASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp HHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred HHHHhhccccCCC-CCCEEEEEecHHH
Confidence 9999999999999 6799999998654
No 79
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-36 Score=354.73 Aligned_cols=216 Identities=42% Similarity=0.695 Sum_probs=180.4
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++.++..............++.+|||+||||||.|++
T Consensus 38 l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 117 (253)
T 1wrb_A 38 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQIL 117 (253)
T ss_dssp TTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHH
Confidence 67889999999999999999999999999999999999999999988865432211112245689999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++...++.+++++||.+...+...+..+++|+|+|||||.+++..+.+.+.++++||+||||+|+++||.+++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 118 SESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99999999889999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|++.+... . ...
T Consensus 198 i~~~~~~~--------------------------------------------------~------------------~~~ 209 (253)
T 1wrb_A 198 IIEESNMP--------------------------------------------------S------------------GIN 209 (253)
T ss_dssp HHHSSCCC--------------------------------------------------C------------------GGG
T ss_pred HHhhccCC--------------------------------------------------C------------------CCC
Confidence 99864210 0 023
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccCCcchhhHHHH
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1832)
+|+++||||+|+.+++++..||.+|+.|.|+..+.++++|+|.+
T Consensus 210 ~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~~ 253 (253)
T 1wrb_A 210 RQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253 (253)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred cEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceecC
Confidence 79999999999999999999999999999999999999999964
No 80
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.2e-35 Score=345.31 Aligned_cols=238 Identities=42% Similarity=0.729 Sum_probs=216.5
Q ss_pred ccHHHHHHHHhhccceecCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHH
Q psy6409 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 702 ~~~~~~~~~~~~~~i~~~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla 781 (1832)
++++++..++..+.|.+.|...|.|+.+|++++|++.++++|.+.||..|+|+|.++|+.++.|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeec
Q psy6409 782 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861 (1832)
Q Consensus 782 ~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~ 861 (1832)
|++|++..+...+.. ....++++|||+||++||.|+.+.+.+++...++++..++||.....+...+..+++|+|+
T Consensus 83 ~~l~~l~~l~~~~~~----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 83 YLLPAIVHINHQPFL----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHTSCCC----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcccc----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 999999887543221 2245789999999999999999999999888899999999999998888888889999999
Q ss_pred CHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEE
Q psy6409 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941 (1832)
Q Consensus 862 TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~ 941 (1832)
||++|.+++.++...+.++++|||||||+|++++|++.+..|+..++ ...|+++|
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-------------------------~~~q~~~~ 213 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-------------------------PDRQTLMW 213 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-------------------------SSCEEEEE
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-------------------------ccceEEEE
Confidence 99999999998888899999999999999999999999999998874 24799999
Q ss_pred EecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 942 TATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 942 SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|||+|+.+..++..++.+|..+.++..
T Consensus 214 SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999887653
No 81
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.6e-37 Score=390.17 Aligned_cols=289 Identities=19% Similarity=0.150 Sum_probs=217.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDI-IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdv-Iv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
|+.+|+|+|+ +||.++.++++ |++||||||||++|++|++..+.. .++++||++||++||.|+.+.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7899999986 79999999887 999999999999999999976532 3678999999999999999887
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHH
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~ 905 (1832)
. |+.+....+.... ....+..|.++|++.+.+.+.+. ..+.++++|||||||++ +.++...+..+..
T Consensus 69 ~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~ 135 (451)
T 2jlq_A 69 R------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIST 135 (451)
T ss_dssp T------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHH
T ss_pred c------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHH
Confidence 5 2333322222111 11235679999999998887654 46889999999999976 3333222222211
Q ss_pred hCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 985 (1832)
Q Consensus 906 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~ 985 (1832)
.. .....|+++||||+|..+.. .+..++..+.+..... ....
T Consensus 136 ~~------------------------~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~p-~~~~---------- 177 (451)
T 2jlq_A 136 RV------------------------EMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREIP-ERSW---------- 177 (451)
T ss_dssp HH------------------------HTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCCC-SSCC----------
T ss_pred hh------------------------cCCCceEEEEccCCCccchh---hhcCCCceEecCccCC-chhh----------
Confidence 11 12358999999999875432 2334444444331111 1000
Q ss_pred hHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCC
Q psy6409 986 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065 (1832)
Q Consensus 986 ~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlD 1065 (1832)
..+...+.. ..+++||||++++.|+.+++.|...|+.+..+||.+. ..+++.|++|+++|||||+++++|||
T Consensus 178 ---~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 178 ---NTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGAN 249 (451)
T ss_dssp ---SSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCC
T ss_pred ---HHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcC
Confidence 011222332 3568999999999999999999999999999999764 57999999999999999999999999
Q ss_pred CcCcCEEEEcC--------------------CCCCHhHHHHHhcccccCCC-CcEEEEEecCC
Q psy6409 1066 IKDVSMVINYD--------------------MAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1107 (1832)
Q Consensus 1066 ip~v~~VI~~d--------------------~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~~~ 1107 (1832)
+|+ ++||||| +|.+..+|+||+|||||.|. .|.|++|+..+
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 999 9999999 99999999999999999998 78998887544
No 82
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.9e-35 Score=404.32 Aligned_cols=323 Identities=20% Similarity=0.198 Sum_probs=253.3
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHHHHHc----CC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 734 SLPTEILEII-EKIGYAEPTPIQRQAIPIGLQ----NR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 734 ~L~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~----gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+++....+.+ ..+||. |||+|.+||+.++. |+ |+|++||||||||++|+++++..+ ..++
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~------------~~g~ 653 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV------------DNHK 653 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH------------TTTC
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH------------HhCC
Confidence 3445555555 557885 69999999999986 66 999999999999999999998654 2467
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH---HHHhc-CCceeecCHHHHHHHHHccccccCCcee
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTY 882 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~---~~l~~-~~~IlV~TP~rL~d~l~~~~~~l~~~~~ 882 (1832)
+++||+||++||.|+++.+.++...+++++..++|+.+..+.. ..+.. .++|+|+||+.|. +.+.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~l 728 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGL 728 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccce
Confidence 9999999999999999999998888899999999877655443 23444 4999999998662 3457889999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++ +.....++..++ ...++++||||+++....++...+.++..
T Consensus 729 vIiDEaH~~-----g~~~~~~l~~l~-------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~ 778 (1151)
T 2eyq_A 729 LIVDEEHRF-----GVRHKERIKAMR-------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSI 778 (1151)
T ss_dssp EEEESGGGS-----CHHHHHHHHHHH-------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEE
T ss_pred EEEechHhc-----ChHHHHHHHHhc-------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceE
Confidence 999999984 333444443331 34789999999877776666665554332
Q ss_pred EEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHc--CCcEEEEcCCCCHHHHH
Q psy6409 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQRE 1040 (1832)
Q Consensus 963 v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~ 1040 (1832)
+. ........+...+...........+...+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+
T Consensus 779 i~--~~~~~r~~i~~~~~~~~~~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~ 854 (1151)
T 2eyq_A 779 IA--TPPARRLAVKTFVREYDSMVVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 854 (1151)
T ss_dssp CC--CCCCBCBCEEEEEEECCHHHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHH
T ss_pred Ee--cCCCCccccEEEEecCCHHHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHH
Confidence 21 111112234444444333333333333332 4678999999999999999999988 88999999999999999
Q ss_pred HHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-CCCHhHHHHHhcccccCCCCcEEEEEecCCC
Q psy6409 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108 (1832)
Q Consensus 1041 ~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d 1108 (1832)
.+++.|++|+++|||||+++++|||+|++++||+++. +.++.+|+||+||+||.|..|.|++++.+++
T Consensus 855 ~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 855 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999999999999999999999999999999998 4699999999999999999999999987654
No 83
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.3e-34 Score=396.87 Aligned_cols=322 Identities=20% Similarity=0.197 Sum_probs=251.0
Q ss_pred CCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcE
Q psy6409 1410 LPTEILEII-EKIGYAEPTPIQRQAIPIGLQ----NR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482 (1832)
Q Consensus 1410 L~~~ll~~l-~~~g~~~ptpiQ~~ai~~il~----g~--dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~ 1482 (1832)
+++...+.+ ..++| .|||+|.+|++.++. |+ |+|+++|||||||++|+++++..+. .+++
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g~~ 654 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NHKQ 654 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TTCE
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hCCe
Confidence 445555554 56788 479999999999986 66 9999999999999999999886542 3678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHH---HHhhc-CCcEEEeCHHHHHHHHHccccccCCceeE
Q psy6409 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG---FRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYI 1558 (1832)
Q Consensus 1483 vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~---~~l~~-~~~IiVaTP~rl~~~l~~~~~~l~~v~ll 1558 (1832)
++||+||++||.|+++.+.+.+..+++++..++|..+..... ..+.. .++|+|+||+.+. ..+.+.++++|
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lv 729 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLL 729 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceE
Confidence 999999999999999999998888889999888877655432 23444 4899999998652 34678899999
Q ss_pred EEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE
Q psy6409 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638 (1832)
Q Consensus 1559 ViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v 1638 (1832)
||||||++ +.....++..++ ...++++||||+++.........+.++..+
T Consensus 730 IiDEaH~~-----g~~~~~~l~~l~-------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i 779 (1151)
T 2eyq_A 730 IVDEEHRF-----GVRHKERIKAMR-------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSII 779 (1151)
T ss_dssp EEESGGGS-----CHHHHHHHHHHH-------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEEC
T ss_pred EEechHhc-----ChHHHHHHHHhc-------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEE
Confidence 99999984 233333333221 346899999999877766666555543332
Q ss_pred EEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHc--CCcEEEEcCCCCHHHHHH
Q psy6409 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL--GYNACTLHGGKGQEQREL 1716 (1832)
Q Consensus 1639 ~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~--~~~v~~lHg~ls~~~R~~ 1716 (1832)
...+ .....+...+...........+...+ ..+++++|||+++.+++.++..|... ++.+..+||+|++.+|+.
T Consensus 780 ~~~~--~~r~~i~~~~~~~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 780 ATPP--ARRLAVKTFVREYDSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 855 (1151)
T ss_dssp CCCC--CBCBCEEEEEEECCHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHH
T ss_pred ecCC--CCccccEEEEecCCHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHH
Confidence 2111 11223444444444333233333322 24678999999999999999999988 889999999999999999
Q ss_pred HHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-CCCHHHHHHHhcccccCCCccEEEEEeeCCC
Q psy6409 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783 (1832)
Q Consensus 1717 il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d 1783 (1832)
+++.|++|+++|||||+++++|||+|++++||+++. +.++.+|+||+||+||.|+.|.|++++.+.+
T Consensus 856 il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 856 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred HHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 999999999999999999999999999999999998 5689999999999999999999999987653
No 84
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.9e-36 Score=357.23 Aligned_cols=187 Identities=28% Similarity=0.493 Sum_probs=168.3
Q ss_pred cccccCCCCChhhhhhcccccCC--CcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 79 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g--~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~q 79 (1832)
|.++||.+|||+|.+|||.++.| +|++++||||||||+||+||++.++... ..+|+||||+||||||.|
T Consensus 107 l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~---------~~~~~~lil~PtreLa~Q 177 (300)
T 3fmo_B 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA---------NKYPQCLCLSPTYELALQ 177 (300)
T ss_dssp HHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc---------CCCceEEEEcCcHHHHHH
Confidence 56789999999999999999998 9999999999999999999999876432 457899999999999999
Q ss_pred HHHHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhh-ccccCCcceEEEEcccchhhc-CCCh
Q psy6409 80 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMID-MGFE 156 (1832)
Q Consensus 80 i~~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~l~~~~~~vlDEad~~l~-~gf~ 156 (1832)
+++++++++... ++...+++||.....+. ..+++|||+|||||.+++.+ +.+.++++++|||||||+|++ +||.
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~ 254 (300)
T 3fmo_B 178 TGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ 254 (300)
T ss_dssp HHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHH
T ss_pred HHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcH
Confidence 999999998764 68889999998865443 57899999999999999966 678899999999999999999 7999
Q ss_pred HHHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcc
Q psy6409 157 PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236 (1832)
Q Consensus 157 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1832)
+++..|+..+|.
T Consensus 255 ~~~~~i~~~~~~-------------------------------------------------------------------- 266 (300)
T 3fmo_B 255 DQSIRIQRMLPR-------------------------------------------------------------------- 266 (300)
T ss_dssp HHHHHHHTTSCT--------------------------------------------------------------------
T ss_pred HHHHHHHHhCCC--------------------------------------------------------------------
Confidence 999999887751
Q ss_pred ccccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
.+|++|||||||+.|+++|..||++|+.|.|.
T Consensus 267 ----~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 267 ----NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ----TCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ----CCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 17999999999999999999999999999875
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=341.47 Aligned_cols=194 Identities=46% Similarity=0.734 Sum_probs=168.6
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+....... ....++.+|||+||||||.|++
T Consensus 35 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~---~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR---EQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CCCSEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh---hccCCCcEEEEeCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998876432111 1246789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++ ..++..++++||.+...+...+..+++|+|+|||||.+++..+.+.+.++++||+||||+|+++||.+++..
T Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 190 (228)
T 3iuy_A 112 AECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 190 (228)
T ss_dssp HHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHH
T ss_pred HHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHH
Confidence 9999997 458899999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..++ + .
T Consensus 191 i~~~~~----------------------------------------------------~--------------------~ 198 (228)
T 3iuy_A 191 ILLDVR----------------------------------------------------P--------------------D 198 (228)
T ss_dssp HHHHSC----------------------------------------------------S--------------------S
T ss_pred HHHhCC----------------------------------------------------c--------------------C
Confidence 998774 1 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
+|+++||||||+.+++++..||.+|+.|+|
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 799999999999999999999999999986
No 86
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.5e-36 Score=395.34 Aligned_cols=326 Identities=18% Similarity=0.135 Sum_probs=240.1
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEc
Q psy6409 1408 ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487 (1832)
Q Consensus 1408 ~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLa 1487 (1832)
+++++.++++|... +..|+|+|.++++.++.|+|+|++||||||||++|++|++..+.. .++++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~vLvl~ 222 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRTLILA 222 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEc
Confidence 34555555555443 478999998899999999999999999999999999999987643 367899999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1488 PtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
||++||.|+++.+..+ .+. +.+.... .....+..+.++|.+.+...+... ..+.++++|||||||++
T Consensus 223 PtreLa~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 223 PTRVVAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp SSHHHHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-
T ss_pred ChHHHHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-
Confidence 9999999999887632 222 2221100 011224567788888887666543 45889999999999987
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCC
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 1647 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~ 1647 (1832)
+.+|...+..|+..++ ...+|+++||||++..+..+.. .++..+.+.... +.
T Consensus 290 ~~~~~~~~~~i~~~l~------------------------~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-~~ 341 (618)
T 2whx_A 290 DPCSVAARGYISTRVE------------------------MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-PE 341 (618)
T ss_dssp SHHHHHHHHHHHHHHH------------------------HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-CS
T ss_pred CccHHHHHHHHHHHhc------------------------ccCccEEEEECCCchhhhhhhc---cCCceeeecccC-CH
Confidence 6667777777765542 1347999999999887543221 233333332210 10
Q ss_pred cceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1648 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+...++..+.. ..+++||||+|++.|+.++..|...++.+..+||. +|..+++.|++|+++
T Consensus 342 -------------~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~ 403 (618)
T 2whx_A 342 -------------RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD 403 (618)
T ss_dssp -------------SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS
T ss_pred -------------HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE
Confidence 001122233333 35789999999999999999999999999999984 788899999999999
Q ss_pred EEEEcccccccCCCCCCCEE--------------------EEeCCCCCHHHHHHHhcccccCCC-ccEEEEEee---CCC
Q psy6409 1728 ILVATDVAGRGIDIKDVSMV--------------------INYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT---KDD 1783 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~V--------------------I~~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~---~~d 1783 (1832)
|||||+++++|||+| +++| |+|++|.+.++|+||+|||||+|. .|.|++|++ +.|
T Consensus 404 VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d 482 (618)
T 2whx_A 404 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKND 482 (618)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCC
T ss_pred EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhh
Confidence 999999999999998 9988 888889999999999999999965 899999998 778
Q ss_pred hhHHHHHHHHhhcCCCCCCChhh
Q psy6409 1784 SHLFYDLKQMMISSPVSTCPPEL 1806 (1832)
Q Consensus 1784 ~~~~~~l~~~l~~~~~~~~~~~L 1806 (1832)
...+..+...+.-.+ ..++..+
T Consensus 483 ~~~l~~le~~i~l~~-~~~~~~~ 504 (618)
T 2whx_A 483 EDHAHWTEAKMLLDN-IYTPEGI 504 (618)
T ss_dssp TTCHHHHHHHHHHTT-CCCTTCC
T ss_pred HHHHHHHHhHhcccc-ccCCcch
Confidence 888888887654433 4555443
No 87
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.9e-36 Score=386.47 Aligned_cols=281 Identities=22% Similarity=0.231 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+.++|.++++.+..++|+|++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+.
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~- 280 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKA- 280 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHH-
Confidence 445566666666667899999999999999999999873 2568999999999999999877664
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~ 909 (1832)
++..+...+|+.. +..+++|+|+|||+| +.+..+.+.++++||||||| +++.+|...+..|+..++.
T Consensus 281 --~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~ 347 (666)
T 3o8b_A 281 --HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAET 347 (666)
T ss_dssp --HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTT
T ss_pred --hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhh
Confidence 3556777788765 345799999999998 46667788899999999996 6778888888888887752
Q ss_pred CCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHH
Q psy6409 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 989 (1832)
Q Consensus 910 ~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~ 989 (1832)
. ....++++|||+|..+. ...|....+...... .+ ........
T Consensus 348 ~-----------------------~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~~--~i----~~~~~~~~-- 390 (666)
T 3o8b_A 348 A-----------------------GARLVVLATATPPGSVT------VPHPNIEEVALSNTG--EI----PFYGKAIP-- 390 (666)
T ss_dssp T-----------------------TCSEEEEEESSCTTCCC------CCCTTEEEEECBSCS--SE----EETTEEEC--
T ss_pred c-----------------------CCceEEEECCCCCcccc------cCCcceEEEeecccc--hh----HHHHhhhh--
Confidence 1 12347778999987421 122222222111110 01 11100000
Q ss_pred HHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc
Q psy6409 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069 (1832)
Q Consensus 990 ~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v 1069 (1832)
+.....+++||||++++.|+.+++.|...++.+..+||+|++.+ |.++..+|||||+++++|||+| |
T Consensus 391 -----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V 457 (666)
T 3o8b_A 391 -----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-F 457 (666)
T ss_dssp -----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-B
T ss_pred -----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-C
Confidence 12235778999999999999999999999999999999999875 5567779999999999999997 9
Q ss_pred CEEE----------EcC-----------CCCCHhHHHHHhcccccCCCCcEEEEEecCCCchH
Q psy6409 1070 SMVI----------NYD-----------MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111 (1832)
Q Consensus 1070 ~~VI----------~~d-----------~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~ 1111 (1832)
++|| ||| +|.+.++|+||+||||| |..|. ++|+++++...
T Consensus 458 ~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 458 DSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp SEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 9988 777 89999999999999999 88999 99999987654
No 88
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-35 Score=383.80 Aligned_cols=311 Identities=16% Similarity=0.156 Sum_probs=236.0
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+|+|+|.+|++.++.++++++++|||||||++|++|++..+.. .++++|||+||++|+.|+.+.+.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999876531 234899999999999999999999
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++...++.+..++||.+..++ +..+++|+|+||+.|.. .....+.++++|||||||++.. +.+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 877667889999999876554 45579999999997643 3345678899999999999875 4556665554
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHH-HHhcCCCcEEEEccc------CCCCcceEEEEE
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA-RSYLRRPATVYIGSV------GKPTERIEQIVY 980 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~-~~~l~~p~~v~~~~~------~~~~~~i~q~~~ 980 (1832)
+ ...+++++|||++.....+. ...+..+..+.+... ......+.....
T Consensus 250 ~-------------------------~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 304 (510)
T 2oca_A 250 N-------------------------NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFL 304 (510)
T ss_dssp T-------------------------TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEE
T ss_pred c-------------------------cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEee
Confidence 2 23689999999976543211 112222322211111 001111111111
Q ss_pred Ecc---------------------hhhHHHHHHHHHHcC---CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCH
Q psy6409 981 ILS---------------------EQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQ 1036 (1832)
Q Consensus 981 ~~~---------------------~~~k~~~L~~~l~~~---~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~ 1036 (1832)
... ...+...+.+++... ...++||||+ ...++.+++.|...+..+..+||++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~ 383 (510)
T 2oca_A 305 RYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDT 383 (510)
T ss_dssp ECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTH
T ss_pred cCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCH
Confidence 111 112333344444432 3445666666 888999999999998899999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEec-ccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEec
Q psy6409 1037 EQRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105 (1832)
Q Consensus 1037 ~~R~~il~~F~~G~~~VLVaT-dv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~ 1105 (1832)
.+|..+++.|++|+++||||| +++++|||+|++++||++++|.+...|+|++||+||.|..|.++++++
T Consensus 384 ~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 384 ETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999 999999999999999999999999999999999999998775666665
No 89
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6e-37 Score=401.15 Aligned_cols=306 Identities=19% Similarity=0.214 Sum_probs=213.8
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 742 IIEKIGYA-----EPTPIQR-----QAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 742 ~l~~~g~~-----~pt~iQ~-----~ai~~il------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
+|...||. .|||+|+ ++||.++ .|+|+|++||||||||++|++|++..+.. .+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 45556777 9999999 9999988 89999999999999999999999987532 46
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEE
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lVi 885 (1832)
+++|||+||++||.|+++.+..+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvVi 338 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVM 338 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEE
T ss_pred CcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEE
Confidence 78999999999999999888754 222 11111000 00001222233344443333332 36889999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
||||++ +..+...+..+...+ .....|+++||||+++.+..+... ..|.....
T Consensus 339 DEaH~~-~~~~~~~~~~l~~~~------------------------~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~ 391 (673)
T 2wv9_A 339 DEAHFT-DPASIAARGYIATRV------------------------EAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVS 391 (673)
T ss_dssp ESTTCC-CHHHHHHHHHHHHHH------------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE
T ss_pred eCCccc-CccHHHHHHHHHHhc------------------------cccCCcEEEEcCCCChhhhhhccc--CCceEEEe
Confidence 999987 211111222221111 013579999999998764422211 11211111
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045 (1832)
Q Consensus 966 ~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~ 1045 (1832)
.. +... ....++..+.. ..+++||||++++.|+.+++.|...++.+..+||. +|..+++.
T Consensus 392 ~~--------------~~~~-~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~ 451 (673)
T 2wv9_A 392 SE--------------IPDR-AWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPK 451 (673)
T ss_dssp CC--------------CCSS-CCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGG
T ss_pred ee--------------cCHH-HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHH
Confidence 10 0111 11112233332 46789999999999999999999999999999994 79999999
Q ss_pred HhCCCCcEEEecccccccCCCcCcCEEEE--------------------cCCCCCHhHHHHHhcccccC-CCCcEEEEEe
Q psy6409 1046 LKGGSKDILVATDVAGRGIDIKDVSMVIN--------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC 1104 (1832)
Q Consensus 1046 F~~G~~~VLVaTdv~~rGlDip~v~~VI~--------------------~d~p~s~~~yvQr~GRaGR~-g~~G~ai~~~ 1104 (1832)
|++|+++|||||+++++|||+| +++||| |++|.+.++|+||+|||||. |..|.|++|+
T Consensus 452 F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 452 CKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp GGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred HHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999999999999999999999 999998 67899999999999999999 7889999996
Q ss_pred ---cCCCchHHHHHHHH
Q psy6409 1105 ---TKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1105 ---~~~d~~~~~~l~~~ 1118 (1832)
+++|..++..++..
T Consensus 531 ~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 531 GGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp SCCCCCCTTBHHHHHHH
T ss_pred ecCChhHHHHHHHHHHH
Confidence 56676666666543
No 90
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.5e-35 Score=375.46 Aligned_cols=289 Identities=19% Similarity=0.149 Sum_probs=215.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIGLQNRDI-IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~il~g~dv-ii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
|+.+|+|+|. +||.++.++++ +++||||||||++|++|++..+.. .++++||++||++||.|+++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7889999985 79999999887 899999999999999999876533 3678999999999999999887
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHH
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~ 1580 (1832)
.. ..+....+.... ....+..|.++|++.+...+.+. ..+.++++|||||||++ +.++...+..+..
T Consensus 69 ~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~ 135 (451)
T 2jlq_A 69 RG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYIST 135 (451)
T ss_dssp TT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHH
T ss_pred cC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHH
Confidence 53 223221111110 12235679999999998877654 56889999999999976 3222222222211
Q ss_pred hCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchh
Q psy6409 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 1660 (1832)
Q Consensus 1581 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~ 1660 (1832)
.. .....|+++||||++..+.. .+...+..+.+... .+... +
T Consensus 136 ~~------------------------~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~p~~~----~------ 177 (451)
T 2jlq_A 136 RV------------------------EMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIERE-IPERS----W------ 177 (451)
T ss_dssp HH------------------------HTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEECC-CCSSC----C------
T ss_pred hh------------------------cCCCceEEEEccCCCccchh---hhcCCCceEecCcc-CCchh----h------
Confidence 11 12357999999999875432 22333443333211 11100 0
Q ss_pred hHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCC
Q psy6409 1661 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740 (1832)
Q Consensus 1661 ~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GID 1740 (1832)
..+..++... .+++||||+++.+|+.++..|...++.+..+||.+. ..+++.|++|+++|||||+++++|||
T Consensus 178 ---~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiD 249 (451)
T 2jlq_A 178 ---NTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGAN 249 (451)
T ss_dssp ---SSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCC
T ss_pred ---HHHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcC
Confidence 0112233333 568999999999999999999999999999999754 57999999999999999999999999
Q ss_pred CCCCCEEEEeC--------------------CCCCHHHHHHHhcccccCCC-ccEEEEEeeCC
Q psy6409 1741 IKDVSMVINYD--------------------MAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1782 (1832)
Q Consensus 1741 ip~v~~VI~~d--------------------~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~~~ 1782 (1832)
+|+ ++||||| +|.+..+|+||+|||||.|. .|.+++|+..+
T Consensus 250 ip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 250 FRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 999 9999999 99999999999999999998 88998887543
No 91
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.5e-35 Score=379.59 Aligned_cols=310 Identities=16% Similarity=0.162 Sum_probs=234.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..|+|+|.++++.++.++++++++|||||||++|++|++..+.. .+.++|||+||++|+.|+++.+.++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999876642 2348999999999999999999998
Q ss_pred cCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1504 ~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
+...+..+..+.|+.+...+ +..+++|+|+||+.+.. .....+.++++|||||||++.. +.+..++..++
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 181 RLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp TSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred hcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 76667788888888776654 45578999999996643 3345678899999999999864 45666655553
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHH-HhcCCCcEEEEcccC------CCCcceEEEEEE
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR-SYLRRPATVYIGSVG------KPTERIEQIVYI 1656 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~-~~l~~p~~v~i~~~~------~~~~~i~q~~~~ 1656 (1832)
...+++++|||++........ ..+..+..+.+.... .....+......
T Consensus 251 -------------------------~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 305 (510)
T 2oca_A 251 -------------------------NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLR 305 (510)
T ss_dssp -------------------------TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEE
T ss_pred -------------------------cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeec
Confidence 346899999999766432211 112223222111110 001111111111
Q ss_pred cc---------------------hhhHHHHHHHHHHhC---CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHH
Q psy6409 1657 LS---------------------EQDKRKKLMEVLNRG---VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712 (1832)
Q Consensus 1657 ~~---------------------~~~k~~~l~~~l~~~---~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~ 1712 (1832)
.. ...+...+.+++... ...++||||+ ..++..++..|...+..+..+||++++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~ 384 (510)
T 2oca_A 306 YPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTE 384 (510)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHH
T ss_pred CChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHH
Confidence 11 112333445555443 3445666666 8999999999999888999999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEc-ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEee
Q psy6409 1713 QRELALNSLKGGSKDILVAT-DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780 (1832)
Q Consensus 1713 ~R~~il~~F~~g~~~VLVAT-dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~ 1780 (1832)
+|..+++.|++|+++||||| +++++|||+|++++||+++.|.+...|+||+||+||.|..|.++++++
T Consensus 385 ~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 385 TRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999 999999999999999999999999999999999999988774444444
No 92
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.5e-36 Score=382.70 Aligned_cols=278 Identities=20% Similarity=0.243 Sum_probs=195.9
Q ss_pred HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEc
Q psy6409 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~G 841 (1832)
+++|+|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+..+ + +....+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~ 67 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQ 67 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecc
Confidence 4678999999999999999999999986532 3678999999999999999988744 2 222111
Q ss_pred CCchHHHHHHHhcCCceeecCHHHHHHHHHcccc--------ccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL--------VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913 (1832)
Q Consensus 842 g~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~--------~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~ 913 (1832)
.. -+|+||+++++++..+.+ .+.++++|||||||++ +.+|...+..+...+
T Consensus 68 ~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~------ 126 (440)
T 1yks_A 68 AF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRA------ 126 (440)
T ss_dssp CC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHH------
T ss_pred cc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHh------
Confidence 11 147888777655443332 3789999999999987 333333222222211
Q ss_pred CCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHH
Q psy6409 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993 (1832)
Q Consensus 914 ~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~ 993 (1832)
.....|+++||||+++.+..++.. ..|..... ..+..... ..++.
T Consensus 127 ------------------~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~-~~~~~ 171 (440)
T 1yks_A 127 ------------------RANESATILMTATPPGTSDEFPHS--NGEIEDVQ--------------TDIPSEPW-NTGHD 171 (440)
T ss_dssp ------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEE--------------CCCCSSCC-SSSCH
T ss_pred ------------------ccCCceEEEEeCCCCchhhhhhhc--CCCeeEee--------------eccChHHH-HHHHH
Confidence 023489999999998765432221 11111110 00111111 11122
Q ss_pred HHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEE
Q psy6409 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1073 (1832)
Q Consensus 994 ~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI 1073 (1832)
.+.. .++++||||++++.|+.+++.|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||
T Consensus 172 ~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 172 WILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEE
T ss_pred HHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEE
Confidence 2222 3578999999999999999999999999999999 4688999999999999999999999999999 99999
Q ss_pred E-------------------cCCCCCHhHHHHHhcccccC-CCCcEEEEEe---cCCCchHHHHHHHH
Q psy6409 1074 N-------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC---TKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1074 ~-------------------~d~p~s~~~yvQr~GRaGR~-g~~G~ai~~~---~~~d~~~~~~l~~~ 1118 (1832)
+ |++|.+..+|+||+|||||. |..|.|++|+ ++++..++..+...
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHH
Confidence 6 89999999999999999997 6789999996 67777777776654
No 93
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=338.38 Aligned_cols=191 Identities=46% Similarity=0.755 Sum_probs=177.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|+.
T Consensus 58 l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~~~~lil~Ptr~L~~q~~ 128 (249)
T 3ber_A 58 CDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQRLFALVLTPTRELAFQIS 128 (249)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCSSCEEEECSSHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCCceEEEEeCCHHHHHHHH
Confidence 568999999999999999999999999999999999999999999877543 34678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhh-ccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~-~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+++++...++.+++++||.....+...+..+++|+|+|||+|.+++.. +.+.+.++++|||||||+|+++||.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~ 208 (249)
T 3ber_A 129 EQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVD 208 (249)
T ss_dssp HHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHH
Confidence 99999998889999999999999999999999999999999999999986 56789999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 209 ~i~~~~~~------------------------------------------------------------------------ 216 (249)
T 3ber_A 209 KILKVIPR------------------------------------------------------------------------ 216 (249)
T ss_dssp HHHHSSCS------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99987751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-+|+++||||+|+.+++++..||.+|+.|.|++
T Consensus 217 ~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~~ 249 (249)
T 3ber_A 217 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249 (249)
T ss_dssp SSEEEEEESSCCHHHHHHHHHHCSSCEEEECCC
T ss_pred CCeEEEEeccCCHHHHHHHHHHCCCCEEEEecC
Confidence 179999999999999999999999999998874
No 94
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-33 Score=328.71 Aligned_cols=238 Identities=42% Similarity=0.729 Sum_probs=215.7
Q ss_pred cCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q psy6409 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLA 1456 (1832)
Q Consensus 1377 ~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla 1456 (1832)
++++++..++..+.|.+.|...|.|+.+|.+++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 45667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEe
Q psy6409 1457 FLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536 (1832)
Q Consensus 1457 ~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVa 1536 (1832)
|++|++..+...+.. ....++++|||+||++|+.|+++.+++++...++++..++||.+...+...+..+++|+|+
T Consensus 83 ~~l~~l~~l~~~~~~----~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~ 158 (242)
T 3fe2_A 83 YLLPAIVHINHQPFL----ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158 (242)
T ss_dssp HHHHHHHHHHTSCCC----CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhcccc----ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEE
Confidence 999999887653321 2245788999999999999999999999888899999999999998888888889999999
Q ss_pred CHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEE
Q psy6409 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616 (1832)
Q Consensus 1537 TP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~ 1616 (1832)
||++|.+++..+...+.++++|||||||+|++++|.+.+..|+..++ ...|+++|
T Consensus 159 Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-------------------------~~~q~~~~ 213 (242)
T 3fe2_A 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-------------------------PDRQTLMW 213 (242)
T ss_dssp CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC-------------------------SSCEEEEE
T ss_pred CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC-------------------------ccceEEEE
Confidence 99999999998888899999999999999999999999999988875 34799999
Q ss_pred EccCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 1617 TATMPPAVERLARSYLRRPATVYIGSV 1643 (1832)
Q Consensus 1617 SATl~~~~~~~~~~~l~~p~~v~i~~~ 1643 (1832)
|||+|+.+..++..++.+|..+.++..
T Consensus 214 SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999998887653
No 95
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=341.22 Aligned_cols=189 Identities=38% Similarity=0.607 Sum_probs=172.8
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+...... ...++.+|||+||||||.|++
T Consensus 69 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-----~~~~~~~lil~Pt~~La~q~~ 143 (262)
T 3ly5_A 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-----PRNGTGVLILSPTRELAMQTF 143 (262)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-----GGGCCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-----ccCCceEEEEeCCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999888654221 135778999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhc-cccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~-~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++..++++||.....+...+..+++|||+|||||.+++... .+.+.++++|||||||+|++|||.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~ 223 (262)
T 3ly5_A 144 GVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 223 (262)
T ss_dssp HHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999775 4789999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 224 ~i~~~~~~------------------------------------------------------------------------ 231 (262)
T 3ly5_A 224 QIIKLLPT------------------------------------------------------------------------ 231 (262)
T ss_dssp HHHHHSCS------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99998852
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCe
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPA 267 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1832)
.+|+|+||||+|+.|+++++.+|.+|.
T Consensus 232 ~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 232 RRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred CCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 279999999999999999999999775
No 96
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-35 Score=372.24 Aligned_cols=292 Identities=19% Similarity=0.238 Sum_probs=202.1
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEE
Q psy6409 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV 1515 (1832)
Q Consensus 1436 ~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~ 1515 (1832)
++++|+|++++||||||||++|++|++..+.. .++++|||+||++||.|+++.+..+ + +....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~ 66 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHT 66 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEES
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEec
Confidence 35688999999999999999999999986643 3678999999999999999988754 2 22111
Q ss_pred CCcchHHHHHHhhcCCcEEEeCHHHHHHHHHcc--------ccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCC
Q psy6409 1516 GGLSREEQGFRLRLGCEIVIATPGRLIDVLENR--------YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587 (1832)
Q Consensus 1516 gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~--------~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~ 1587 (1832)
+... +|+||+++.+++..+ ...+.++++|||||||++ +.++...+..+...++
T Consensus 67 ~~~~--------------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~---- 127 (440)
T 1yks_A 67 QAFS--------------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRAR---- 127 (440)
T ss_dssp SCCC--------------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHH----
T ss_pred ccce--------------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhc----
Confidence 1110 366766554333322 234789999999999987 3333222222222111
Q ss_pred CCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHH
Q psy6409 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667 (1832)
Q Consensus 1588 ~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~ 1667 (1832)
...+|+++||||+++.+..+... ..+.. .+ ...+..... ..++
T Consensus 128 --------------------~~~~~~l~~SAT~~~~~~~~~~~--~~~~~-~~-------------~~~~~~~~~-~~~~ 170 (440)
T 1yks_A 128 --------------------ANESATILMTATPPGTSDEFPHS--NGEIE-DV-------------QTDIPSEPW-NTGH 170 (440)
T ss_dssp --------------------TTSCEEEEECSSCTTCCCSSCCC--SSCEE-EE-------------ECCCCSSCC-SSSC
T ss_pred --------------------cCCceEEEEeCCCCchhhhhhhc--CCCee-Ee-------------eeccChHHH-HHHH
Confidence 13479999999998764422211 11111 11 011111111 1122
Q ss_pred HHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEE
Q psy6409 1668 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1747 (1832)
Q Consensus 1668 ~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~V 1747 (1832)
..+.. ..+++||||++++.|+.++..|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++|
T Consensus 171 ~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~V 244 (440)
T 1yks_A 171 DWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERV 244 (440)
T ss_dssp HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEE
T ss_pred HHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEE
Confidence 22332 2578999999999999999999999999999999 4688999999999999999999999999999 9999
Q ss_pred EE-------------------eCCCCCHHHHHHHhcccccC-CCccEEEEEe---eCCChhHHHHHHHHhhcCCCCCCCh
Q psy6409 1748 IN-------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC---TKDDSHLFYDLKQMMISSPVSTCPP 1804 (1832)
Q Consensus 1748 I~-------------------~d~P~s~~~yiQRiGRaGR~-g~~G~ai~~~---~~~d~~~~~~l~~~l~~~~~~~~~~ 1804 (1832)
|+ |++|.+..+|+||+|||||. |..|.|++|+ ++.+...+..+...+.-.+ ..++.
T Consensus 245 I~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~~l~~ 323 (440)
T 1yks_A 245 LDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDN-MEVRG 323 (440)
T ss_dssp EECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTT-SCCGG
T ss_pred EeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccc-ccccc
Confidence 96 89999999999999999997 6899999996 6778888888887654443 45555
Q ss_pred hhc
Q psy6409 1805 ELL 1807 (1832)
Q Consensus 1805 ~L~ 1807 (1832)
.+.
T Consensus 324 ~~~ 326 (440)
T 1yks_A 324 GMV 326 (440)
T ss_dssp GCC
T ss_pred ccc
Confidence 543
No 97
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.1e-34 Score=368.76 Aligned_cols=293 Identities=22% Similarity=0.256 Sum_probs=225.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.+|+|+|.++++.++.++++|+++|||||||++|++++... +.++|||+|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999999988642 567999999999999999999884
Q ss_pred cCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++. +..++|+... .++|+|+||+++...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~ 216 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS 216 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc
Confidence 778 8888887652 579999999999765542 23568999999999998877653 44433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-------------------HHHHHHHHhcCCCcEEEE--c
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-------------------AVERLARSYLRRPATVYI--G 966 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-------------------~v~~~~~~~l~~p~~v~~--~ 966 (1832)
+ ..+++++|||++. ....+...++..+....+ .
T Consensus 217 ~--------------------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 270 (472)
T 2fwr_A 217 I--------------------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVP 270 (472)
T ss_dssp C--------------------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEEC
T ss_pred C--------------------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcC
Confidence 2 2578999999862 122222222322221111 1
Q ss_pred ccCC------------------------CCcceEEEE---------------------EEcchhhHHHHHHHHHHcCCCC
Q psy6409 967 SVGK------------------------PTERIEQIV---------------------YILSEQDKRKKLMEVLNRGVKK 1001 (1832)
Q Consensus 967 ~~~~------------------------~~~~i~q~~---------------------~~~~~~~k~~~L~~~l~~~~~~ 1001 (1832)
.... ....+.+.+ ..+....|...|.+++....+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 350 (472)
T 2fwr_A 271 LAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKD 350 (472)
T ss_dssp CCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Confidence 0000 000000000 0122345677888888887788
Q ss_pred CEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCH
Q psy6409 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1081 (1832)
Q Consensus 1002 ~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~ 1081 (1832)
++||||+++..++.+++.|. +..+||+++..+|..+++.|++|.++|||||+++++|||+|++++||+|++|.++
T Consensus 351 k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~ 425 (472)
T 2fwr_A 351 KIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSA 425 (472)
T ss_dssp CBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCC
T ss_pred cEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCH
Confidence 99999999999999999873 6689999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcccccCCCC---cEEEEEecCC
Q psy6409 1082 EDYTHRIGRTGRAGKE---GLAVSFCTKD 1107 (1832)
Q Consensus 1082 ~~yvQr~GRaGR~g~~---G~ai~~~~~~ 1107 (1832)
..|+||+||+||.|.. ..++.|++.+
T Consensus 426 ~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 426 REYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp HHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999853 3555566655
No 98
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-33 Score=375.59 Aligned_cols=335 Identities=16% Similarity=0.220 Sum_probs=248.2
Q ss_pred CCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccC
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~-g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~ 1478 (1832)
.++.+|+++++++.+.+.+...+ ..|+++|.++|+.++. +++++++||||||||+ ++|++...... ...
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~-------~~~ 138 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM-------PHL 138 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC-------GGG
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc-------ccC
Confidence 45678999999999999999988 7899999999998885 4679999999999999 56666322111 112
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHhc-CCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCcee
Q psy6409 1479 QGPYAIIMAPTRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557 (1832)
Q Consensus 1479 ~~~~vLiLaPtreLa~Qi~~~~~~~~-~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~l 1557 (1832)
.+..++|++|+++|+.|++..+.... ...+..+........ ....+.+|+|+|||++...+... ..+.++++
T Consensus 139 ~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~ 211 (773)
T 2xau_A 139 ENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSC 211 (773)
T ss_dssp GTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEE
T ss_pred CCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCE
Confidence 36789999999999999988775542 223332221111100 11236899999999999877664 45889999
Q ss_pred EEEccchh-hhcCCC-hHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCC
Q psy6409 1558 IVLDEADR-MIDMGF-EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635 (1832)
Q Consensus 1558 lViDEaH~-ll~~gf-~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p 1635 (1832)
|||||||. +++..+ ...+..+.... ...+++++|||++. ..+. .++..+
T Consensus 212 lIlDEah~R~ld~d~~~~~l~~l~~~~--------------------------~~~~iIl~SAT~~~--~~l~-~~~~~~ 262 (773)
T 2xau_A 212 IILDEAHERTLATDILMGLLKQVVKRR--------------------------PDLKIIIMSATLDA--EKFQ-RYFNDA 262 (773)
T ss_dssp EEECSGGGCCHHHHHHHHHHHHHHHHC--------------------------TTCEEEEEESCSCC--HHHH-HHTTSC
T ss_pred EEecCccccccchHHHHHHHHHHHHhC--------------------------CCceEEEEeccccH--HHHH-HHhcCC
Confidence 99999995 554221 11222222222 34789999999964 3343 455554
Q ss_pred cEEEEcccCCCCcceEEEEEEcchhhH----HHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHH-----------cCC
Q psy6409 1636 ATVYIGSVGKPTERIEQIVYILSEQDK----RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-----------LGY 1700 (1832)
Q Consensus 1636 ~~v~i~~~~~~~~~i~q~~~~~~~~~k----~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~-----------~~~ 1700 (1832)
..+.+.... ..+.+.+........ ...+..++.....+++||||+++..++.++..|.. .++
T Consensus 263 ~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 263 PLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp CEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred CcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 444443322 234444433333322 23444455555678999999999999999999975 478
Q ss_pred cEEEEcCCCCHHHHHHHHHHhh-----CCCCcEEEEcccccccCCCCCCCEEEEeCC------------------CCCHH
Q psy6409 1701 NACTLHGGKGQEQRELALNSLK-----GGSKDILVATDVAGRGIDIKDVSMVINYDM------------------AKSIE 1757 (1832)
Q Consensus 1701 ~v~~lHg~ls~~~R~~il~~F~-----~g~~~VLVATdvl~~GIDip~v~~VI~~d~------------------P~s~~ 1757 (1832)
.+..+||+|++.+|..+++.|+ +|..+|||||+++++|||||+|.+||++++ |.|.+
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~ 419 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKA 419 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHH
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHH
Confidence 8999999999999999999999 999999999999999999999999999888 89999
Q ss_pred HHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1758 DYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
+|+||+|||||. ..|.|++|+++.+.
T Consensus 420 s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 420 SAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred HHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999 78999999986543
No 99
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=9.9e-35 Score=373.48 Aligned_cols=280 Identities=22% Similarity=0.234 Sum_probs=214.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcC
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~ 1505 (1832)
+.++|.++++.+..+++++++||||||||++|.+|++. .+.++||++|||+||.|+++.+.+..
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 44555556666668889999999999999999998873 25589999999999999998877653
Q ss_pred CCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCC
Q psy6409 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585 (1832)
Q Consensus 1506 ~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~ 1585 (1832)
+..+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..|+..++..
T Consensus 282 --g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 282 --GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETA 348 (666)
T ss_dssp --SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTT
T ss_pred --CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhc
Confidence 455666777754 345789999999997 45667788899999999997 67778888888888887621
Q ss_pred CCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHH
Q psy6409 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665 (1832)
Q Consensus 1586 ~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~ 1665 (1832)
....++++|||++..+. ...|....+..... ..+ ........
T Consensus 349 -----------------------~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i----~~~~~~~~--- 390 (666)
T 3o8b_A 349 -----------------------GARLVVLATATPPGSVT------VPHPNIEEVALSNT--GEI----PFYGKAIP--- 390 (666)
T ss_dssp -----------------------TCSEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSE----EETTEEEC---
T ss_pred -----------------------CCceEEEECCCCCcccc------cCCcceEEEeeccc--chh----HHHHhhhh---
Confidence 12236778999988421 12222222111110 001 11100000
Q ss_pred HHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCC
Q psy6409 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745 (1832)
Q Consensus 1666 l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~ 1745 (1832)
+.....+++||||++++.|+.++..|...++.+..+||+|++.+ |.++..+|||||+++++|||+| |+
T Consensus 391 ----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 12235789999999999999999999999999999999999875 5667779999999999999997 99
Q ss_pred EEE----------EeC-----------CCCCHHHHHHHhcccccCCCccEEEEEeeCCChhH
Q psy6409 1746 MVI----------NYD-----------MAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1746 ~VI----------~~d-----------~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~ 1786 (1832)
+|| ||| +|.+.++|+||+||||| |..|. ++|+++.+...
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 988 777 89999999999999999 99999 99999886544
No 100
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=7.5e-36 Score=390.75 Aligned_cols=307 Identities=19% Similarity=0.218 Sum_probs=215.3
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCC
Q psy6409 1417 IIEKIGYA-----EPTPIQR-----QAIPIGL------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480 (1832)
Q Consensus 1417 ~l~~~g~~-----~ptpiQ~-----~ai~~il------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~ 1480 (1832)
+|...||. .|+|+|. ++||.++ .|+|+|++||||||||++|++|++..+.. .+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~ 270 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KR 270 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TT
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CC
Confidence 34455666 8999999 9999988 89999999999999999999999976543 46
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEE
Q psy6409 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560 (1832)
Q Consensus 1481 ~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llVi 1560 (1832)
+++|||+||++||.|+++.+..+ ++. ...+.... .-..+.-+-+.+.+.+...+... ..+.++++|||
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvVi 338 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVM 338 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEE
T ss_pred CcEEEEccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEE
Confidence 78999999999999999888765 222 11111000 00111223344555554444332 46889999999
Q ss_pred ccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEE
Q psy6409 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640 (1832)
Q Consensus 1561 DEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i 1640 (1832)
||||++ +..+...+..+...++ ...+|+++||||++..+..+... ..|. ..+
T Consensus 339 DEaH~~-~~~~~~~~~~l~~~~~------------------------~~~~~vl~~SAT~~~~i~~~~~~--~~~i-~~v 390 (673)
T 2wv9_A 339 DEAHFT-DPASIAARGYIATRVE------------------------AGEAAAIFMTATPPGTSDPFPDT--NSPV-HDV 390 (673)
T ss_dssp ESTTCC-CHHHHHHHHHHHHHHH------------------------TTSCEEEEECSSCTTCCCSSCCC--SSCE-EEE
T ss_pred eCCccc-CccHHHHHHHHHHhcc------------------------ccCCcEEEEcCCCChhhhhhccc--CCce-EEE
Confidence 999987 2111122222222110 13579999999998764322110 1111 111
Q ss_pred cccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHH
Q psy6409 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720 (1832)
Q Consensus 1641 ~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~ 1720 (1832)
.. ...... ...++..+.. ..+++||||++++.|+.++..|...++.+..+||. +|..+++.
T Consensus 391 ~~-------------~~~~~~-~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~ 451 (673)
T 2wv9_A 391 SS-------------EIPDRA-WSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPK 451 (673)
T ss_dssp EC-------------CCCSSC-CSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGG
T ss_pred ee-------------ecCHHH-HHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHH
Confidence 10 011111 1112223332 46799999999999999999999999999999994 79999999
Q ss_pred hhCCCCcEEEEcccccccCCCCCCCEEEE--------------------eCCCCCHHHHHHHhcccccC-CCccEEEEEe
Q psy6409 1721 LKGGSKDILVATDVAGRGIDIKDVSMVIN--------------------YDMAKSIEDYTHRIGRTGRA-GKEGLAVSFC 1779 (1832)
Q Consensus 1721 F~~g~~~VLVATdvl~~GIDip~v~~VI~--------------------~d~P~s~~~yiQRiGRaGR~-g~~G~ai~~~ 1779 (1832)
|++|+++|||||+++++|||+| +++||+ |++|.+.++|+||+|||||. |+.|.|++|+
T Consensus 452 F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 452 CKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp GGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred HHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 9999999999999999999999 999998 67999999999999999998 7899999996
Q ss_pred ---eCCChhHHHHHHHHh
Q psy6409 1780 ---TKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1780 ---~~~d~~~~~~l~~~l 1794 (1832)
++.|..++..+...+
T Consensus 531 ~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 531 GGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp SCCCCCCTTBHHHHHHHH
T ss_pred ecCChhHHHHHHHHHHHH
Confidence 566777777666544
No 101
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.9e-33 Score=329.06 Aligned_cols=246 Identities=39% Similarity=0.647 Sum_probs=204.5
Q ss_pred hhccceecCCCCCC--cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHH
Q psy6409 712 EDYSITIKGGKVPD--PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789 (1832)
Q Consensus 712 ~~~~i~~~~~~~p~--p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~ 789 (1832)
+++.+.+.|...|. ++.+|++++|++.++++|...||..|+|+|.++++.++.|+|++++||||||||++|++|++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~ 84 (253)
T 1wrb_A 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 84 (253)
T ss_dssp CCCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 34567788998888 9999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHH
Q psy6409 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869 (1832)
Q Consensus 790 i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~ 869 (1832)
+..............++++|||+||++||.|+.+.+.+++...++.+..++||.....+...+..+++|+|+||++|.++
T Consensus 85 l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~ 164 (253)
T 1wrb_A 85 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 164 (253)
T ss_dssp HHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHH
T ss_pred HHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 75422110001123467999999999999999999999988889999999999998888778888899999999999999
Q ss_pred HHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHH
Q psy6409 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949 (1832)
Q Consensus 870 l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v 949 (1832)
+.+..+.+..+++|||||||+|++++|++.+..|+..+... .....|+++||||+|+.+
T Consensus 165 l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~q~l~~SAT~~~~~ 223 (253)
T 1wrb_A 165 IEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP---------------------SGINRQTLMFSATFPKEI 223 (253)
T ss_dssp HHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC---------------------CGGGCEEEEEESSCCHHH
T ss_pred HHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC---------------------CCCCcEEEEEEEeCCHHH
Confidence 99888889999999999999999999999999999865310 112479999999999999
Q ss_pred HHHHHHhcCCCcEEEEcccCCCCcceEEE
Q psy6409 950 ERLARSYLRRPATVYIGSVGKPTERIEQI 978 (1832)
Q Consensus 950 ~~~~~~~l~~p~~v~~~~~~~~~~~i~q~ 978 (1832)
..++..++.+|..+.++........+.|.
T Consensus 224 ~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp HHHHHHHCSSCEEEEEC------------
T ss_pred HHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 99999999999999888766665556553
No 102
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.1e-34 Score=332.33 Aligned_cols=191 Identities=32% Similarity=0.547 Sum_probs=162.2
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|+.
T Consensus 45 l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 45 IYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCceEEEEECcHHHHHHHH
Confidence 467899999999999999999999999999999999999999999766321 35678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcC-ccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~-~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++.+.+++||.....+...+..+ ++|+|+|||+|.+++..+.+.+.++++|||||||+|+++||..++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 195 (237)
T 3bor_A 116 KVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIY 195 (237)
T ss_dssp HHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHH
Confidence 999999998899999999999998888888776 9999999999999999998999999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|+..+|.
T Consensus 196 ~i~~~~~~------------------------------------------------------------------------ 203 (237)
T 3bor_A 196 EIFQKLNT------------------------------------------------------------------------ 203 (237)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99887641
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
.+|+++||||+|+.+++++..||++|+.|.|+.
T Consensus 204 ~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 204 SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp TCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred CCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 179999999999999999999999999998764
No 103
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=9.8e-35 Score=368.44 Aligned_cols=272 Identities=19% Similarity=0.223 Sum_probs=197.2
Q ss_pred HHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEE
Q psy6409 760 PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLV 839 (1832)
Q Consensus 760 ~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~ 839 (1832)
..+..|+|+|++||||||||++|++|++..+.. .++++||++||++||.|+++.+. |..+...
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 345568999999999999999999999987632 36789999999999999999886 2333322
Q ss_pred EcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh-----hhcCCChHHHHHHHHhCCCCCCCC
Q psy6409 840 VGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR-----MIDMGFEPDVQKILEYMPVTNLKP 914 (1832)
Q Consensus 840 ~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~-----l~d~gf~~~i~~Il~~l~~~~~~~ 914 (1832)
.+..... -..+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+.
T Consensus 79 ~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------------- 139 (459)
T 2z83_A 79 TSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------------- 139 (459)
T ss_dssp C-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-------------
T ss_pred ecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-------------
Confidence 2221110 1224567788999887766654 4688999999999997 33322211110
Q ss_pred CCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHH
Q psy6409 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 994 (1832)
Q Consensus 915 ~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~ 994 (1832)
.....|+++||||+|..+..+... ..|........ +... ...+...
T Consensus 140 -----------------~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~~~--~~~~-------------~~~~~~~ 185 (459)
T 2z83_A 140 -----------------ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQDEI--PDRA-------------WSSGYEW 185 (459)
T ss_dssp -----------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEECCC--CSSC-------------CSSCCHH
T ss_pred -----------------ccCCccEEEEEcCCCcchhhhccC--CCCeEEecccC--Ccch-------------hHHHHHH
Confidence 113579999999998765332211 23332211100 0000 0111222
Q ss_pred HHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEE
Q psy6409 995 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVIN 1074 (1832)
Q Consensus 995 l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~ 1074 (1832)
+.. ..+++||||+++..|+.+++.|...++.+..+||. +|..+++.|++|+++|||||+++++|||||+ ++||+
T Consensus 186 l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 186 ITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp HHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEE
T ss_pred HHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEE
Confidence 332 36789999999999999999999999999999995 7889999999999999999999999999999 99999
Q ss_pred --------------------cCCCCCHhHHHHHhcccccCCC-CcEEEEEecCC
Q psy6409 1075 --------------------YDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1107 (1832)
Q Consensus 1075 --------------------~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~~~~ 1107 (1832)
|++|.|..+|+||+|||||.|. .|.|++|++..
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999986
No 104
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=327.46 Aligned_cols=194 Identities=37% Similarity=0.598 Sum_probs=173.5
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+...... ...++.+|||+||||||.|+.
T Consensus 40 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~-----~~~~~~~lil~Pt~~L~~q~~ 114 (236)
T 2pl3_A 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT-----STDGLGVLIISPTRELAYQTF 114 (236)
T ss_dssp HHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC-----GGGCCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc-----ccCCceEEEEeCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999887653211 135788999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhc-cccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~-~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+++++++...++.+++++||.+...+...+ .+++|+|+|||+|.+++..+ .+.+.++++||+||||+|++|||..++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 193 (236)
T 2pl3_A 115 EVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMN 193 (236)
T ss_dssp HHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHH
T ss_pred HHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHH
Confidence 999999998899999999999988877776 58999999999999999765 5788999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|++.+|.
T Consensus 194 ~i~~~~~~------------------------------------------------------------------------ 201 (236)
T 2pl3_A 194 AVIENLPK------------------------------------------------------------------------ 201 (236)
T ss_dssp HHHHTSCT------------------------------------------------------------------------
T ss_pred HHHHhCCC------------------------------------------------------------------------
Confidence 99987751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
-+|+++||||+|+.+++++..||.+|+.|.|+.
T Consensus 202 ~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 202 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 179999999999999999999999999998875
No 105
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.8e-34 Score=327.04 Aligned_cols=189 Identities=30% Similarity=0.550 Sum_probs=171.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|+++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|++
T Consensus 39 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 109 (230)
T 2oxc_A 39 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLSTQILILAPTREIAVQIH 109 (230)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCceEEEEeCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999766432 34678999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCC-ChHHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDV 159 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~g-f~~~~ 159 (1832)
+++++++... ++++.+++||.....+...+. +++|+|+|||+|.+++..+.+.+.++++||+||||+|+++| |.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 188 (230)
T 2oxc_A 110 SVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQI 188 (230)
T ss_dssp HHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHH
T ss_pred HHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHH
Confidence 9999998765 799999999999888877764 79999999999999999998899999999999999999999 99999
Q ss_pred HHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccc
Q psy6409 160 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239 (1832)
Q Consensus 160 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1832)
..|++.+|.
T Consensus 189 ~~i~~~~~~----------------------------------------------------------------------- 197 (230)
T 2oxc_A 189 NWIYSSLPA----------------------------------------------------------------------- 197 (230)
T ss_dssp HHHHHHSCS-----------------------------------------------------------------------
T ss_pred HHHHHhCCC-----------------------------------------------------------------------
Confidence 999987751
Q ss_pred cceeEEEEEccCcHHHHHHHHHHhcCCeEEEEc
Q psy6409 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIG 272 (1832)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (1832)
.+|+++||||+|+.+++++..|+.+|+.|.+.
T Consensus 198 -~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 198 -SKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp -SCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred -CCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 27999999999999999999999999988764
No 106
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-34 Score=326.76 Aligned_cols=192 Identities=36% Similarity=0.548 Sum_probs=174.8
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|||+|.++||.++.|+|++++||||||||++|++|++..+... ..++.+|||+||||||.|++
T Consensus 19 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 89 (219)
T 1q0u_A 19 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEVQAVITAPTRELATQIY 89 (219)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCceEEEEcCcHHHHHHHH
Confidence 567899999999999999999999999999999999999999999766431 34678999999999999999
Q ss_pred HHHHhcCCCc----cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChH
Q psy6409 82 EETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
+++++++... ++...+++||.+...+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~ 169 (219)
T 1q0u_A 90 HETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFIT 169 (219)
T ss_dssp HHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHH
Confidence 9999998776 788999999999988888888899999999999999999998899999999999999999999999
Q ss_pred HHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccc
Q psy6409 158 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237 (1832)
Q Consensus 158 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1832)
++..|++.+|.
T Consensus 170 ~l~~i~~~~~~--------------------------------------------------------------------- 180 (219)
T 1q0u_A 170 DVDQIAARMPK--------------------------------------------------------------------- 180 (219)
T ss_dssp HHHHHHHTSCT---------------------------------------------------------------------
T ss_pred HHHHHHHhCCc---------------------------------------------------------------------
Confidence 99999887751
Q ss_pred cccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEccc
Q psy6409 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 274 (1832)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1832)
-+|+++||||+|+.+++++..|+.+|+.+.++-.
T Consensus 181 ---~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 181 ---DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp ---TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred ---ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 1799999999999999999999999999887644
No 107
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.9e-34 Score=362.43 Aligned_cols=293 Identities=22% Similarity=0.266 Sum_probs=224.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|.++++.++.++++++++|||+|||++|++++... +..+|||+|+++|+.|+.+.+.+|
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 7999999999999999999999999999999999988642 457999999999999999999884
Q ss_pred CCCCCe-EEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCC
Q psy6409 1505 TPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583 (1832)
Q Consensus 1505 ~~~g~~-v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~ 1583 (1832)
++. +..+.|+... .++|+|+||+.+...+.. ...++++|||||||++.+.+|.. ++..++
T Consensus 157 ---~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~ 217 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI 217 (472)
T ss_dssp ---CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC
T ss_pred ---CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC
Confidence 677 7777777653 478999999998766542 23568999999999998776653 444432
Q ss_pred CCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-------------------HHHHHHHhcCCCcEE--EEcc
Q psy6409 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-------------------VERLARSYLRRPATV--YIGS 1642 (1832)
Q Consensus 1584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-------------------~~~~~~~~l~~p~~v--~i~~ 1642 (1832)
..+++++|||+... ...+...++..+... .+..
T Consensus 218 --------------------------~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 271 (472)
T 2fwr_A 218 --------------------------APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPL 271 (472)
T ss_dssp --------------------------CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECC
T ss_pred --------------------------CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCC
Confidence 35789999999731 222222222222211 1100
Q ss_pred cCC------------------------CCcceEEEE---------------------EEcchhhHHHHHHHHHHhCCCCc
Q psy6409 1643 VGK------------------------PTERIEQIV---------------------YILSEQDKRKKLMEVLNRGVKKP 1677 (1832)
Q Consensus 1643 ~~~------------------------~~~~i~q~~---------------------~~~~~~~k~~~l~~~l~~~~~~~ 1677 (1832)
... ....+.+.+ ..+....|...+.+++......+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k 351 (472)
T 2fwr_A 272 AEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDK 351 (472)
T ss_dssp CHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCc
Confidence 000 000000000 00123456678888888877889
Q ss_pred EEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHH
Q psy6409 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1757 (1832)
Q Consensus 1678 vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~ 1757 (1832)
+||||+++..++.++..|. +..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.|+.
T Consensus 352 ~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~ 426 (472)
T 2fwr_A 352 IIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAR 426 (472)
T ss_dssp BCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCH
T ss_pred EEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHH
Confidence 9999999999999999873 66799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCc---cEEEEEeeCCC
Q psy6409 1758 DYTHRIGRTGRAGKE---GLAVSFCTKDD 1783 (1832)
Q Consensus 1758 ~yiQRiGRaGR~g~~---G~ai~~~~~~d 1783 (1832)
.|+||+||+||.|+. ..++.|+..+.
T Consensus 427 ~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 427 EYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp HHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred HHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999998843 34555676653
No 108
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-33 Score=316.09 Aligned_cols=187 Identities=33% Similarity=0.609 Sum_probs=173.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.++||.++.|+|++++||||||||++|++|++..+.. ...++.+|||+||++||.|++
T Consensus 18 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~~~~~~~lil~Pt~~L~~q~~ 88 (206)
T 1vec_A 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------KKDNIQAMVIVPTRELALQVS 88 (206)
T ss_dssp HHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------TSCSCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------cCCCeeEEEEeCcHHHHHHHH
Confidence 56799999999999999999999999999999999999999999976532 135678999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 160 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~ 160 (1832)
+.+++++... ++.+.+++||.....+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|++++|...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~ 168 (206)
T 1vec_A 89 QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIME 168 (206)
T ss_dssp HHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHH
Confidence 9999998877 788999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccccc
Q psy6409 161 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240 (1832)
Q Consensus 161 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1832)
.|+..+|.
T Consensus 169 ~i~~~~~~------------------------------------------------------------------------ 176 (206)
T 1vec_A 169 DIILTLPK------------------------------------------------------------------------ 176 (206)
T ss_dssp HHHHHSCT------------------------------------------------------------------------
T ss_pred HHHHhCCc------------------------------------------------------------------------
Confidence 99887751
Q ss_pred ceeEEEEEccCcHHHHHHHHHHhcCCeEE
Q psy6409 241 YRQTVMFTATMPPAVERLARSYLRRPATV 269 (1832)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (1832)
.+|+++||||+|+.+++++..||.+|+.|
T Consensus 177 ~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 177 NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 17999999999999999999999999876
No 109
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=327.91 Aligned_cols=195 Identities=34% Similarity=0.517 Sum_probs=169.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|||+|.+|||.++.|+|++++||||||||+||++|++..+... ...++.+|||+||||||.|++
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~~~~~~lil~Pt~~L~~q~~ 115 (245)
T 3dkp_A 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--------ANKGFRALIISPTRELASQIH 115 (245)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--------CSSSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--------ccCCceEEEEeCCHHHHHHHH
Confidence 467899999999999999999999999999999999999999999877432 235778999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHh-HHhhcCccEEEcCchhhHHHhhhc--cccCCcceEEEEcccchhhc---CCC
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQG-FRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEADRMID---MGF 155 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~-~~l~~~~~Ilv~TPgrl~~~~~~~--~~~l~~~~~~vlDEad~~l~---~gf 155 (1832)
+++++++...++...+++||.....+. .....+++|||+|||||.+++..+ .+.+.++++||+||||+|++ +||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 195 (245)
T 3dkp_A 116 RELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGF 195 (245)
T ss_dssp HHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CH
T ss_pred HHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccH
Confidence 999999999999999888887655443 334578999999999999999876 57899999999999999999 579
Q ss_pred hHHHHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhc
Q psy6409 156 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANY 235 (1832)
Q Consensus 156 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1832)
.+++..|+..++.
T Consensus 196 ~~~~~~i~~~~~~------------------------------------------------------------------- 208 (245)
T 3dkp_A 196 RDQLASIFLACTS------------------------------------------------------------------- 208 (245)
T ss_dssp HHHHHHHHHHCCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCC-------------------------------------------------------------------
Confidence 9999999876631
Q ss_pred cccccceeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccC
Q psy6409 236 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 275 (1832)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1832)
...|+++||||||+.|++++..||++|+.|.||+.+
T Consensus 209 ----~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 244 (245)
T 3dkp_A 209 ----HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARN 244 (245)
T ss_dssp ----TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC--
T ss_pred ----CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCCC
Confidence 127899999999999999999999999999999864
No 110
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=314.49 Aligned_cols=218 Identities=42% Similarity=0.682 Sum_probs=187.8
Q ss_pred cCCCCCCcccCccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhh
Q psy6409 719 KGGKVPDPVRNWKE-ASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~-~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~ 797 (1832)
.+..+|.|+.+|.+ +++++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~- 88 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS- 88 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch-
Confidence 34578999999999 7999999999999999999999999999999999999999999999999999999877432111
Q ss_pred hccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc
Q psy6409 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 798 ~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
.....++++||++||++||.|+.+.+.++. ..++.+..++||.....+...+..+++|+|+||++|.+++......+
T Consensus 89 --~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 89 --REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp ------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCC
T ss_pred --hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCc
Confidence 112367899999999999999999999986 45889999999998888877888899999999999999998888889
Q ss_pred CCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 878 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
.++++|||||||++++++|.+.+..++..++ ...|+++||||+|+.+..++..++
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVR-------------------------PDRQTVMTSATWPDTVRQLALSYL 220 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSC-------------------------SSCEEEEEESCCCHHHHHHHHTTC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCC-------------------------cCCeEEEEEeeCCHHHHHHHHHHC
Confidence 9999999999999999999999999998874 247999999999999999999999
Q ss_pred CCCcEEEE
Q psy6409 958 RRPATVYI 965 (1832)
Q Consensus 958 ~~p~~v~~ 965 (1832)
.+|..+++
T Consensus 221 ~~p~~i~v 228 (228)
T 3iuy_A 221 KDPMIVYV 228 (228)
T ss_dssp SSCEEEEC
T ss_pred CCCEEEeC
Confidence 99987753
No 111
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1e-33 Score=359.09 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=196.3
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 1513 (1832)
Q Consensus 1434 i~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~ 1513 (1832)
..++..++++|++||||||||++|++|++..+.. .++++||++||++||.|+++.+.. ..+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~ 77 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALRG------LPVRY 77 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTTT------SCEEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhcC------ceEeE
Confidence 3345678999999999999999999999976643 367899999999999999988863 22322
Q ss_pred EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh-----hcCCChHHHHHHHHhCCCCCCC
Q psy6409 1514 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-----IDMGFEPDVQKILEYMPVTNLK 1588 (1832)
Q Consensus 1514 l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l-----l~~gf~~~l~~Il~~l~~~~~~ 1588 (1832)
..+..... -..+..+.++|.+.+...+... ..+.++++|||||||++ +..+|...+.
T Consensus 78 ~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~------------ 139 (459)
T 2z83_A 78 QTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV------------ 139 (459)
T ss_dssp CC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH------------
T ss_pred EecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh------------
Confidence 22211110 1224557788998887666543 46889999999999973 3322211110
Q ss_pred CCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHH
Q psy6409 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668 (1832)
Q Consensus 1589 ~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~ 1668 (1832)
.....|+++||||++..+..+... ..|...... ..+.. +...+..
T Consensus 140 ------------------~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~--~~~~~-------------~~~~~~~ 184 (459)
T 2z83_A 140 ------------------ELGEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD--EIPDR-------------AWSSGYE 184 (459)
T ss_dssp ------------------HTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--CCCSS-------------CCSSCCH
T ss_pred ------------------ccCCccEEEEEcCCCcchhhhccC--CCCeEEecc--cCCcc-------------hhHHHHH
Confidence 013579999999998764322111 222222110 00000 0011122
Q ss_pred HHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEE
Q psy6409 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVI 1748 (1832)
Q Consensus 1669 ~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI 1748 (1832)
++... .+++||||+++..|+.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+|+ ++||
T Consensus 185 ~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI 258 (459)
T 2z83_A 185 WITEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVI 258 (459)
T ss_dssp HHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEE
T ss_pred HHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEE
Confidence 33333 6789999999999999999999999999999995 7888999999999999999999999999999 9999
Q ss_pred E--------------------eCCCCCHHHHHHHhcccccCCC-ccEEEEEeeCC
Q psy6409 1749 N--------------------YDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCTKD 1782 (1832)
Q Consensus 1749 ~--------------------~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~~~ 1782 (1832)
+ |++|.|..+|+||+|||||.|. .|.|++|+.+.
T Consensus 259 ~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 259 DCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9 7799999999999999999997 89999999886
No 112
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.8e-33 Score=348.22 Aligned_cols=270 Identities=18% Similarity=0.157 Sum_probs=193.1
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCC
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~ 843 (1832)
.|+|+|++||||||||++|++|++..+.. .+++++||+||++||.|+.+.+. ++.+...+|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 37899999999999999999999965532 46789999999999999988775 44555555543
Q ss_pred chHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHH
Q psy6409 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923 (1832)
Q Consensus 844 ~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~ 923 (1832)
.. .-..+..+.+.|.+.+...+.. ...+.++++|||||||++ +.++......+....
T Consensus 64 ~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~---------------- 120 (431)
T 2v6i_A 64 QS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV---------------- 120 (431)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH----------------
T ss_pred cc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh----------------
Confidence 21 1122456778899988766665 456899999999999986 322222322222211
Q ss_pred HHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCE
Q psy6409 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003 (1832)
Q Consensus 924 ~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~v 1003 (1832)
.....|+++||||+++.+..+... ..|....... . ...+...+++.+... .+++
T Consensus 121 --------~~~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~~--------------~-~~~~~~~~~~~l~~~-~~~~ 174 (431)
T 2v6i_A 121 --------SMGDAGAIFMTATPPGTTEAFPPS--NSPIIDEETR--------------I-PDKAWNSGYEWITEF-DGRT 174 (431)
T ss_dssp --------HTTSCEEEEEESSCTTCCCSSCCC--SSCCEEEECC--------------C-CSSCCSSCCHHHHSC-SSCE
T ss_pred --------hCCCCcEEEEeCCCCcchhhhcCC--CCceeecccc--------------C-CHHHHHHHHHHHHcC-CCCE
Confidence 123589999999998753321110 1121111100 0 011112233444433 5689
Q ss_pred EEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCE------------
Q psy6409 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM------------ 1071 (1832)
Q Consensus 1004 IVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~------------ 1071 (1832)
||||++++.|+.+++.|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+
T Consensus 175 lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 175 VWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccccee
Confidence 999999999999999999999999999997 688899999999999999999999999999 654
Q ss_pred -----EEEcCCCCCHhHHHHHhcccccCCC-CcEEEEEe
Q psy6409 1072 -----VINYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFC 1104 (1832)
Q Consensus 1072 -----VI~~d~p~s~~~yvQr~GRaGR~g~-~G~ai~~~ 1104 (1832)
||+++.|.+..+|+||+|||||.|. .|.++++.
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 45666655
No 113
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-32 Score=312.30 Aligned_cols=192 Identities=40% Similarity=0.656 Sum_probs=174.2
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.+.||.+|+|+|.++||.++.|+|++++||||||||++|++|++..+.... ....++.+|||+|||+|+.|++
T Consensus 16 l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~lil~P~~~L~~q~~ 89 (207)
T 2gxq_A 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRALVLTPTRELALQVA 89 (207)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSEEEECSSHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcEEEEECCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998775421 1235789999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+.+++++.. ++..+++||.....+...+..+++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||...+..
T Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 167 (207)
T 2gxq_A 90 SELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEA 167 (207)
T ss_dssp HHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHH
Confidence 999999765 678899999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..+|. .
T Consensus 168 i~~~~~~------------------------------------------------------------------------~ 175 (207)
T 2gxq_A 168 LLSATPP------------------------------------------------------------------------S 175 (207)
T ss_dssp HHHTSCT------------------------------------------------------------------------T
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9886641 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcc
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1832)
+|+++||||+|+.++++++.|+.+|..|.|++
T Consensus 176 ~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 207 (207)
T 2gxq_A 176 RQTLLFSATLPSWAKRLAERYMKNPVLINVIK 207 (207)
T ss_dssp SEEEEECSSCCHHHHHHHHHHCSSCEEEECC-
T ss_pred CeEEEEEEecCHHHHHHHHHHcCCCeEEEcCC
Confidence 79999999999999999999999999998763
No 114
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=9.9e-33 Score=316.80 Aligned_cols=193 Identities=32% Similarity=0.531 Sum_probs=164.0
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.+|||.++.|+|++++||||||||++|++|++..+... ..++.+|||+|||+||.|++
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 29 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSCCEEEECSSHHHHHHHH
T ss_pred HHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCceEEEEECCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999876332 35678999999999999999
Q ss_pred HHHHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHH
Q psy6409 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161 (1832)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~ 161 (1832)
+++++++...++...+++||.+...+...+.. ++|+|+|||+|.+++..+.+.+.++++||+||||+|+++||...+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~ 178 (224)
T 1qde_A 100 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 178 (224)
T ss_dssp HHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHH
Confidence 99999999889999999999998888877765 99999999999999999988999999999999999999999999999
Q ss_pred HHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhccccccc
Q psy6409 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241 (1832)
Q Consensus 162 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1832)
|+..+|. .
T Consensus 179 i~~~~~~------------------------------------------------------------------------~ 186 (224)
T 1qde_A 179 IFTLLPP------------------------------------------------------------------------T 186 (224)
T ss_dssp HHHHSCT------------------------------------------------------------------------T
T ss_pred HHHhCCc------------------------------------------------------------------------c
Confidence 9887651 1
Q ss_pred eeEEEEEccCcHHHHHHHHHHhcCCeEEEEcccCC
Q psy6409 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 276 (1832)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (1832)
+|+++||||+|+.+++++..|+.+|+.|.|.....
T Consensus 187 ~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~ 221 (224)
T 1qde_A 187 TQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDEL 221 (224)
T ss_dssp CEEEEEESSCCHHHHHHHHHHCSSCEEEC------
T ss_pred CeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCcc
Confidence 79999999999999999999999999998876544
No 115
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.98 E-value=5.5e-32 Score=323.96 Aligned_cols=216 Identities=27% Similarity=0.486 Sum_probs=187.6
Q ss_pred ccceecCCCCCCc---ccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcC--CcEEEEecCCChHHHHHHHHHHH
Q psy6409 714 YSITIKGGKVPDP---VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLV 788 (1832)
Q Consensus 714 ~~i~~~~~~~p~p---~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g--rdvIv~apTGSGKTla~llpil~ 788 (1832)
..+.+.+.+.+.| +.+|++++|++.++++|..+||..|||+|.++||.++.| +|+|++||||||||++|++|++.
T Consensus 75 ~~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~ 154 (300)
T 3fmo_B 75 NQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLS 154 (300)
T ss_dssp SCEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHH
Confidence 3455556655554 578999999999999999999999999999999999997 99999999999999999999998
Q ss_pred HHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHH
Q psy6409 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 867 (1832)
Q Consensus 789 ~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~ 867 (1832)
.+.. ...++++|||+||++||.|++..+..++..+ ++.+..++||....... ..+++|+|||||+|+
T Consensus 155 ~l~~---------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~ 222 (300)
T 3fmo_B 155 QVEP---------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVL 222 (300)
T ss_dssp HCCT---------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHH
T ss_pred hhhc---------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHH
Confidence 7532 2457899999999999999999999998765 68899999987754332 457899999999999
Q ss_pred HHHHc-cccccCCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecC
Q psy6409 868 DVLEN-RYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 945 (1832)
Q Consensus 868 d~l~~-~~~~l~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl 945 (1832)
+++.+ +.+.++++++|||||||+|++ .+|...+..|+..++ ..+|+++||||+
T Consensus 223 ~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~-------------------------~~~q~i~~SAT~ 277 (300)
T 3fmo_B 223 DWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQMLLFSATF 277 (300)
T ss_dssp HHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC-------------------------TTCEEEEEESCC
T ss_pred HHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC-------------------------CCCEEEEEeccC
Confidence 99966 566789999999999999998 789999999988775 247999999999
Q ss_pred ChHHHHHHHHhcCCCcEEEEc
Q psy6409 946 PPAVERLARSYLRRPATVYIG 966 (1832)
Q Consensus 946 ~~~v~~~~~~~l~~p~~v~~~ 966 (1832)
|+.+..++..++.+|..+.+.
T Consensus 278 ~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 278 EDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CHHHHHHHHHHSSSCEEEEEC
T ss_pred CHHHHHHHHHHCCCCeEEEec
Confidence 999999999999999988764
No 116
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=6e-32 Score=314.81 Aligned_cols=230 Identities=32% Similarity=0.527 Sum_probs=198.4
Q ss_pred HHHHHhhccceecCCCCCCcccCcccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 707 WRIFREDYSITIKGGKVPDPVRNWKEA----SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 707 ~~~~~~~~~i~~~~~~~p~p~~~f~~~----~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
...+++.+++.+.|.+.|.|+.+|+++ +|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|
T Consensus 4 ~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 4 INFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 456788889999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHH-HHHhcCCceeec
Q psy6409 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG-FRLRLGCEIVIA 861 (1832)
Q Consensus 783 llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~-~~l~~~~~IlV~ 861 (1832)
++|++..+.. ....++++||++||++||.|+++.+.+++...++.+..++|+....... .....+++|+|+
T Consensus 84 ~l~~l~~l~~--------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 155 (245)
T 3dkp_A 84 SIPILMQLKQ--------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155 (245)
T ss_dssp HHHHHHHHCS--------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEE
T ss_pred HHHHHHHHhh--------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEE
Confidence 9999987632 1235779999999999999999999999998899988888775433321 122356899999
Q ss_pred CHHHHHHHHHcc--ccccCCceeEEEecchhhhc---CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccc
Q psy6409 862 TPGRLIDVLENR--YLVLNQCTYIVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 936 (1832)
Q Consensus 862 TP~rL~d~l~~~--~~~l~~~~~lViDEaH~l~d---~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 936 (1832)
||++|.+++.+. .+.+.++++|||||||+|++ .+|...+..++..+.. ...
T Consensus 156 Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~ 211 (245)
T 3dkp_A 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------HKV 211 (245)
T ss_dssp CHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC------------------------TTC
T ss_pred CHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC------------------------CCc
Confidence 999999999876 46788999999999999998 5688888888766531 247
Q ss_pred eEEEEEecCChHHHHHHHHhcCCCcEEEEccc
Q psy6409 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSV 968 (1832)
Q Consensus 937 q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~ 968 (1832)
|+++||||+|+.+..++..++.+|..+.++..
T Consensus 212 ~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 212 RRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 89999999999999999999999999988754
No 117
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=3.8e-32 Score=354.40 Aligned_cols=285 Identities=20% Similarity=0.174 Sum_probs=207.7
Q ss_pred HHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 838 (1832)
Q Consensus 759 i~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~ 838 (1832)
....++|++++++||||||||+. ++..+.. .+.++|++|||+||.|+++.+... |+.+..
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~----al~~l~~------------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYH----AIQKYFS------------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHH----HHHHHHH------------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred HHHhcCCCEEEEEcCCCCCHHHH----HHHHHHh------------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 34556899999999999999983 3333321 123599999999999999999886 778899
Q ss_pred EEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 839 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 918 (1832)
Q Consensus 839 ~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~ 918 (1832)
++|+...... .-....+++++|++.+ .....+++|||||||+|++.+|+..+..++..++.
T Consensus 209 ltG~~~~iv~--TpGr~~~il~~T~e~~--------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--------- 269 (677)
T 3rc3_A 209 VTGEERVTVQ--PNGKQASHVSCTVEMC--------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--------- 269 (677)
T ss_dssp ECSSCEECCS--TTCCCCSEEEEEGGGC--------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE---------
T ss_pred EECCeeEEec--CCCcccceeEecHhHh--------hhcccCCEEEEecceecCCccchHHHHHHHHccCc---------
Confidence 9998663100 0001255666666544 13567899999999999999999999998887741
Q ss_pred hHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcC
Q psy6409 919 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 998 (1832)
Q Consensus 919 ~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~ 998 (1832)
...+++++|||.+ .+..++... ..+..+... .... .... ... . +..+...
T Consensus 270 ---------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~--~r~~-~l~~---~~~---~----l~~l~~~ 319 (677)
T 3rc3_A 270 ---------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDY--KRLT-PISV---LDH---A----LESLDNL 319 (677)
T ss_dssp ---------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEEC--CCSS-CEEE---CSS---C----CCSGGGC
T ss_pred ---------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEe--eecc-hHHH---HHH---H----HHHHHhc
Confidence 3478999999964 355454443 233333211 1111 1110 000 0 0011111
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC--CCCcEEEecccccccCCCcCcCEEEEcC
Q psy6409 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYD 1076 (1832)
Q Consensus 999 ~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~--G~~~VLVaTdv~~rGlDip~v~~VI~~d 1076 (1832)
....||||++++.|+.+++.|...++.+.++||+|++.+|..+++.|++ |.++|||||+++++|||+ +|++||+++
T Consensus 320 -~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 320 -RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp -CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESC
T ss_pred -CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECC
Confidence 3456899999999999999999999999999999999999999999999 999999999999999999 899999999
Q ss_pred C--------------CCCHhHHHHHhcccccCCCC---cEEEEEecCCCchHHHHH
Q psy6409 1077 M--------------AKSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDL 1115 (1832)
Q Consensus 1077 ~--------------p~s~~~yvQr~GRaGR~g~~---G~ai~~~~~~d~~~~~~l 1115 (1832)
+ |.+..+|+||+|||||.|.. |.|+.++. ++...+..+
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~ 452 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEI 452 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHH
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHH
Confidence 9 77999999999999999964 66665544 443344333
No 118
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=1.3e-31 Score=310.26 Aligned_cols=214 Identities=31% Similarity=0.516 Sum_probs=178.8
Q ss_pred cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 719 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
...+.|.++.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~------ 94 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------ 94 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT------
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 34567888999999999999999999999999999999999999999999999999999999999999976521
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcC-CceeecCHHHHHHHHHcccccc
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~-~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++||.|+.+.+.+++...++.+..++||.....+...+..+ ++|+|+||++|.+.+.++.+.+
T Consensus 95 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~ 171 (237)
T 3bor_A 95 ---EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSP 171 (237)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCS
T ss_pred ---cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCc
Confidence 235678999999999999999999999988899999999998877776666655 8999999999999999888889
Q ss_pred CCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhc
Q psy6409 878 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l 957 (1832)
..+++|||||||+|++++|...+..++..++ ...|+++||||+|+.+..++..++
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEECSSCCHHHHHHHHHHC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCC-------------------------CCCeEEEEEEecCHHHHHHHHHHC
Confidence 9999999999999999999999999988774 247999999999999999999999
Q ss_pred CCCcEEEEc
Q psy6409 958 RRPATVYIG 966 (1832)
Q Consensus 958 ~~p~~v~~~ 966 (1832)
.+|..+.++
T Consensus 227 ~~p~~i~v~ 235 (237)
T 3bor_A 227 RDPIRILVK 235 (237)
T ss_dssp SSCEEEC--
T ss_pred CCCEEEEec
Confidence 999877654
No 119
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=310.03 Aligned_cols=209 Identities=42% Similarity=0.725 Sum_probs=189.6
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccC
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~ 803 (1832)
+.++.+|++++|++.++++|+++||..|+++|.++++.++.|+|++++||||||||++|++|++..+.. ..
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~---------~~ 109 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE---------TP 109 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH---------SC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc---------CC
Confidence 345678999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHc-cccccCCcee
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTY 882 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~ 882 (1832)
.++++||++||++||.|+.+.+.+++...++++..++||.....+...+..+++|+|+||++|.+.+.+ +.+.+..+++
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKY 189 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCE
Confidence 467899999999999999999999988889999999999998888777888999999999999999876 4567899999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++++|...+..++..++ ...|+++||||+|+.+..++..++.+|..
T Consensus 190 lViDEah~l~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~v~~~~~~~l~~p~~ 244 (249)
T 3ber_A 190 LVMDEADRILNMDFETEVDKILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244 (249)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHSSC-------------------------SSSEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEEcChhhhhccChHHHHHHHHHhCC-------------------------CCCeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 99999999999999999999998774 23799999999999999999999999988
Q ss_pred EEEc
Q psy6409 963 VYIG 966 (1832)
Q Consensus 963 v~~~ 966 (1832)
+.++
T Consensus 245 i~v~ 248 (249)
T 3ber_A 245 CAVS 248 (249)
T ss_dssp EECC
T ss_pred EEec
Confidence 7653
No 120
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=8.8e-32 Score=338.61 Aligned_cols=271 Identities=18% Similarity=0.159 Sum_probs=193.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCc
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~ 1518 (1832)
.|++++++||||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..++|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 37899999999999999999999965532 46789999999999999988775 34455555543
Q ss_pred chHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCchhhhHH
Q psy6409 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598 (1832)
Q Consensus 1519 ~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~ 1598 (1832)
.. .-..+.-+.+.|.+.+...+.. ...+.++++|||||||++ +.++......+....
T Consensus 64 ~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~---------------- 120 (431)
T 2v6i_A 64 QS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV---------------- 120 (431)
T ss_dssp ----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH----------------
T ss_pred cc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh----------------
Confidence 21 1122455777899988766665 556889999999999986 322333333332221
Q ss_pred HHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcE
Q psy6409 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1678 (1832)
Q Consensus 1599 ~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~v 1678 (1832)
....+++++||||+++.+..+... ..|.. .+.. ... ..+...+..++... .+++
T Consensus 121 --------~~~~~~~l~~SAT~~~~~~~~~~~--~~~i~-~~~~-------------~~~-~~~~~~~~~~l~~~-~~~~ 174 (431)
T 2v6i_A 121 --------SMGDAGAIFMTATPPGTTEAFPPS--NSPII-DEET-------------RIP-DKAWNSGYEWITEF-DGRT 174 (431)
T ss_dssp --------HTTSCEEEEEESSCTTCCCSSCCC--SSCCE-EEEC-------------CCC-SSCCSSCCHHHHSC-SSCE
T ss_pred --------hCCCCcEEEEeCCCCcchhhhcCC--CCcee-eccc-------------cCC-HHHHHHHHHHHHcC-CCCE
Confidence 113579999999998753321110 11111 1100 000 01112223444443 5689
Q ss_pred EEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCE------------
Q psy6409 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM------------ 1746 (1832)
Q Consensus 1679 IVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~------------ 1746 (1832)
||||+++++|+.++..|...++.+..+||+ +|..+++.|++|+++|||||+++++|||+| +.+
T Consensus 175 lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~ 249 (431)
T 2v6i_A 175 VWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPIL 249 (431)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcccccee
Confidence 999999999999999999999999999997 588899999999999999999999999999 655
Q ss_pred -----EEEeCCCCCHHHHHHHhcccccCCC-ccEEEEEee
Q psy6409 1747 -----VINYDMAKSIEDYTHRIGRTGRAGK-EGLAVSFCT 1780 (1832)
Q Consensus 1747 -----VI~~d~P~s~~~yiQRiGRaGR~g~-~G~ai~~~~ 1780 (1832)
||+++.|.+..+|+||+||+||.|. .|.+++|..
T Consensus 250 d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 250 LDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred cccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 6788999999999999999999985 566666663
No 121
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=3.7e-31 Score=305.04 Aligned_cols=212 Identities=29% Similarity=0.510 Sum_probs=182.7
Q ss_pred cCCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhh
Q psy6409 719 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798 (1832)
Q Consensus 719 ~~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~ 798 (1832)
.++..|.+..+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 88 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL------ 88 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh------
Confidence 35667888899999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ccccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc
Q psy6409 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 799 ~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++|+.|+.+.+.+++... ++++..++||.....+...+ .+++|+|+||++|.+++..+.+.+
T Consensus 89 ---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 89 ---ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp ---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred ---cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccc
Confidence 2346899999999999999999999998765 89999999998876665544 479999999999999998888888
Q ss_pred CCceeEEEecchhhhcCC-ChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 878 NQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d~g-f~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
.++++|||||||+++++| |.+.+..|+..++ ...|+++||||+|+.+..++..|
T Consensus 165 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~lSAT~~~~~~~~~~~~ 219 (230)
T 2oxc_A 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLP-------------------------ASKQMLAVSATYPEFLANALTKY 219 (230)
T ss_dssp GGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC-------------------------SSCEEEEEESCCCHHHHHHHTTT
T ss_pred ccCCEEEeCCchHhhcCcchHHHHHHHHHhCC-------------------------CCCeEEEEEeccCHHHHHHHHHH
Confidence 999999999999999998 9999999998875 23689999999999999999999
Q ss_pred cCCCcEEEE
Q psy6409 957 LRRPATVYI 965 (1832)
Q Consensus 957 l~~p~~v~~ 965 (1832)
+.+|..+.+
T Consensus 220 ~~~p~~i~~ 228 (230)
T 2oxc_A 220 MRDPTFVRL 228 (230)
T ss_dssp CSSCEEECC
T ss_pred cCCCeEEEc
Confidence 999977643
No 122
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=302.35 Aligned_cols=212 Identities=35% Similarity=0.577 Sum_probs=186.6
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccC
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 803 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~ 803 (1832)
+.++.+|++++|++.++++|.+.||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..... ...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~ 95 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----TST 95 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----CGG
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----ccc
Confidence 567789999999999999999999999999999999999999999999999999999999999988754221 123
Q ss_pred CCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcc-ccccCCcee
Q psy6409 804 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR-YLVLNQCTY 882 (1832)
Q Consensus 804 ~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~-~~~l~~~~~ 882 (1832)
.++++||++||++||.|+.+.+.+++...++.+..++||.....+...+ .+++|+|+||++|.+.+.+. .+.+..+++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~ 174 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQM 174 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccE
Confidence 5788999999999999999999999988899999999998876665554 47999999999999988765 467889999
Q ss_pred EEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcE
Q psy6409 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962 (1832)
Q Consensus 883 lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~ 962 (1832)
|||||||++++++|...+..++..++ ...|+++||||+|+.+..+++.++.+|..
T Consensus 175 lViDEah~~~~~~~~~~~~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~ 229 (236)
T 2pl3_A 175 LVLDEADRILDMGFADTMNAVIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229 (236)
T ss_dssp EEETTHHHHHHTTTHHHHHHHHHTSC-------------------------TTSEEEEEESSCCHHHHHHHHHSCSSCEE
T ss_pred EEEeChHHHhcCCcHHHHHHHHHhCC-------------------------CCCeEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999998875 23789999999999999999999999988
Q ss_pred EEEc
Q psy6409 963 VYIG 966 (1832)
Q Consensus 963 v~~~ 966 (1832)
+.++
T Consensus 230 i~~~ 233 (236)
T 2pl3_A 230 VWVH 233 (236)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7664
No 123
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=5.6e-32 Score=309.65 Aligned_cols=189 Identities=30% Similarity=0.561 Sum_probs=170.6
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHH
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~ 81 (1832)
|.++||.+|+|+|.+|||.++.|+|++++||||||||++|++|++..+.. ...++.+|||+||++||.|++
T Consensus 29 l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---------~~~~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------CTTCCCEEEECSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---------cCCCEEEEEEeCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999976532 134578999999999999999
Q ss_pred HHHHhcCCCc-cceEEEEeCCcchHHHhHHhhc-CccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhc-CCChHH
Q psy6409 82 EETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPD 158 (1832)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~gg~~~~~q~~~l~~-~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~-~gf~~~ 158 (1832)
++++++.... ++++++++||.+...+...+.. .++|+|+|||+|.+++..+.+.+.++++||+||||+|++ +||...
T Consensus 100 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 179 (220)
T 1t6n_A 100 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD 179 (220)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHH
T ss_pred HHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHH
Confidence 9999998776 7899999999999888888875 579999999999999999888999999999999999998 599999
Q ss_pred HHHHHhhCCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcccccccccccCCCCCchhhHHHHHHhhhcccc
Q psy6409 159 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238 (1832)
Q Consensus 159 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1832)
+..|++.+|.
T Consensus 180 ~~~i~~~~~~---------------------------------------------------------------------- 189 (220)
T 1t6n_A 180 VQEIFRMTPH---------------------------------------------------------------------- 189 (220)
T ss_dssp HHHHHHTSCS----------------------------------------------------------------------
T ss_pred HHHHHHhCCC----------------------------------------------------------------------
Confidence 9999886641
Q ss_pred ccceeEEEEEccCcHHHHHHHHHHhcCCeEEEE
Q psy6409 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271 (1832)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (1832)
.+|+++||||+|+.++++++.||.+|+.|.|
T Consensus 190 --~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 190 --EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp --SSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred --cCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 2799999999999999999999999998865
No 124
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=3.6e-31 Score=302.84 Aligned_cols=208 Identities=35% Similarity=0.535 Sum_probs=184.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCC
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~ 805 (1832)
|..+|++++|++.++++|.++||..|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ...+
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~---------~~~~ 72 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---------ERAE 72 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------TSCS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---------CcCC
Confidence 3468999999999999999999999999999999999999999999999999999999999976532 2346
Q ss_pred cEEEEEccchhHHHHHHHHHHHhcCCC----CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCce
Q psy6409 806 PYAIIMAPTRELAQQIEEETNKFGTPL----GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881 (1832)
Q Consensus 806 ~~~LilaPtreLa~Qi~~~~~~~~~~~----~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~ 881 (1832)
+++||++||++||.|+.+.+.+++... ++.+..++||.....+...+..+++|+|+||++|.+.+.++.+.+..++
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 152 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAH 152 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcce
Confidence 889999999999999999999998776 7889999999887666555556799999999999999988888889999
Q ss_pred eEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 882 ~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
+|||||||++.+++|...+..++..++ ...|+++||||+|+.+..+++.++.+|.
T Consensus 153 ~lViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 207 (219)
T 1q0u_A 153 ILVVDEADLMLDMGFITDVDQIAARMP-------------------------KDLQMLVFSATIPEKLKPFLKKYMENPT 207 (219)
T ss_dssp EEEECSHHHHHHTTCHHHHHHHHHTSC-------------------------TTCEEEEEESCCCGGGHHHHHHHCSSCE
T ss_pred EEEEcCchHHhhhChHHHHHHHHHhCC-------------------------cccEEEEEecCCCHHHHHHHHHHcCCCe
Confidence 999999999999999999999988774 2379999999999999999999999998
Q ss_pred EEEEcc
Q psy6409 962 TVYIGS 967 (1832)
Q Consensus 962 ~v~~~~ 967 (1832)
.+.+..
T Consensus 208 ~~~~~~ 213 (219)
T 1q0u_A 208 FVHVLE 213 (219)
T ss_dssp EEECC-
T ss_pred EEEeec
Confidence 776543
No 125
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.4e-30 Score=294.75 Aligned_cols=202 Identities=33% Similarity=0.595 Sum_probs=184.3
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcE
Q psy6409 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 807 (1832)
Q Consensus 728 ~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~ 807 (1832)
.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+.. ...+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---------~~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---------KKDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------TSCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------cCCCee
Confidence 36999999999999999999999999999999999999999999999999999999999976521 235678
Q ss_pred EEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEe
Q psy6409 808 AIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886 (1832)
Q Consensus 808 ~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViD 886 (1832)
+||++||++|+.|+.+.+..++... ++.+..++||.....+...+..+++|+|+||++|.+.+.++...+..+++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 9999999999999999999998877 789999999999888777777889999999999999999888889999999999
Q ss_pred cchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEE
Q psy6409 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963 (1832)
Q Consensus 887 EaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v 963 (1832)
|||++.+.+|...+..++..++ ...|+++||||+|+.+..++..++.+|..+
T Consensus 154 Eah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLLSQDFVQIMEDIILTLP-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSC-------------------------TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhHhhCcHHHHHHHHHhCC-------------------------ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999988875 237999999999999999999999998754
No 126
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=3.4e-31 Score=348.11 Aligned_cols=305 Identities=19% Similarity=0.227 Sum_probs=190.1
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH-
Q psy6409 749 AEPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE- 822 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~----g-rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~- 822 (1832)
..|+|+|.++++.++. | +++++++|||||||++++..+...+.. ... ......++++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~-~~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSA-RWN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHT-TCC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhc-ccc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 4799999999999886 4 669999999999999976555433321 100 001125789999999999999998
Q ss_pred HHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHH----ccccccCCceeEEEecchhhhcCCChH
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE----NRYLVLNQCTYIVLDEADRMIDMGFEP 898 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~----~~~~~l~~~~~lViDEaH~l~d~gf~~ 898 (1832)
+.++.++ ..+..+.++. ...+.+|+|+||++|...+. ...+....+++|||||||++...+ ..
T Consensus 254 ~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 7777653 3344444332 23468999999999987764 223456789999999999987643 24
Q ss_pred HHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEE--------------
Q psy6409 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY-------------- 964 (1832)
Q Consensus 899 ~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~-------------- 964 (1832)
.+..++..++ ..++++||||+......-...++..+...+
T Consensus 321 ~~~~il~~~~--------------------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~ 374 (590)
T 3h1t_A 321 NWREILEYFE--------------------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPY 374 (590)
T ss_dssp -CHHHHHHST--------------------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCE
T ss_pred HHHHHHHhCC--------------------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCc
Confidence 5566666653 257999999976433322233333333221
Q ss_pred ----EcccCCC-------------CcceEEEEEEcch-------hhHHH----HHHHHHHc-CCCCCEEEEEcccchHHH
Q psy6409 965 ----IGSVGKP-------------TERIEQIVYILSE-------QDKRK----KLMEVLNR-GVKKPVIIFVNQKKGADV 1015 (1832)
Q Consensus 965 ----~~~~~~~-------------~~~i~q~~~~~~~-------~~k~~----~L~~~l~~-~~~~~vIVFv~s~~~~~~ 1015 (1832)
+...... ...+....+.... ..+.. .+.+.+.. ...+++||||+++.+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~ 454 (590)
T 3h1t_A 375 RVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454 (590)
T ss_dssp EEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHH
T ss_pred EEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHH
Confidence 1000000 0000000000000 11112 23333333 345789999999999999
Q ss_pred HHHHHHHcCCc--------EEEEcCCCCHHHHHHHHHHHhCCCCc---EEEecccccccCCCcCcCEEEEcCCCCCHhHH
Q psy6409 1016 LAKGLEKLGYN--------ACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084 (1832)
Q Consensus 1016 l~~~L~~~g~~--------v~~lhg~~~~~~R~~il~~F~~G~~~---VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~y 1084 (1832)
+++.|...+.. +..+||.++. +|..+++.|++|+.+ |||||+++++|||+|+|++||++++|.|...|
T Consensus 455 l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 455 MRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEF 533 (590)
T ss_dssp HHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHH
T ss_pred HHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHH
Confidence 99999876532 7789998764 799999999998877 89999999999999999999999999999999
Q ss_pred HHHhcccccCCC
Q psy6409 1085 THRIGRTGRAGK 1096 (1832)
Q Consensus 1085 vQr~GRaGR~g~ 1096 (1832)
+||+|||||.+.
T Consensus 534 ~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 534 KQIVGRGTRLRE 545 (590)
T ss_dssp HHHHTTSCCCBG
T ss_pred HHHHhhhcccCc
Confidence 999999999875
No 127
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.3e-30 Score=299.25 Aligned_cols=212 Identities=30% Similarity=0.525 Sum_probs=182.1
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhcc
Q psy6409 721 GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800 (1832)
Q Consensus 721 ~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~ 800 (1832)
...|.++.+|++++|++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|++..+..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-------- 78 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT-------- 78 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT--------
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc--------
Confidence 456788899999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCc
Q psy6409 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880 (1832)
Q Consensus 801 ~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~ 880 (1832)
...++++||++||++|+.|+.+.+..++...++.+..++||.....+...+. .++|+|+||++|.+.+.++...+..+
T Consensus 79 -~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 79 -SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp -TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred -cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 2356799999999999999999999999888999999999988766655544 49999999999999998888889999
Q ss_pred eeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCC
Q psy6409 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960 (1832)
Q Consensus 881 ~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p 960 (1832)
++|||||||++.+++|...+..++..++ ...|++++|||+|+.+..++..++.+|
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~-------------------------~~~~~i~lSAT~~~~~~~~~~~~~~~p 211 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNP 211 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSC-------------------------TTCEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCC-------------------------ccCeEEEEEeecCHHHHHHHHHHCCCC
Confidence 9999999999999999999999988774 237999999999999999999999999
Q ss_pred cEEEEcc
Q psy6409 961 ATVYIGS 967 (1832)
Q Consensus 961 ~~v~~~~ 967 (1832)
..+.+..
T Consensus 212 ~~i~~~~ 218 (224)
T 1qde_A 212 VRILVKK 218 (224)
T ss_dssp EEEC---
T ss_pred EEEEecC
Confidence 8876653
No 128
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=2.9e-31 Score=348.73 Aligned_cols=305 Identities=18% Similarity=0.216 Sum_probs=190.2
Q ss_pred CCCcHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH-
Q psy6409 1424 AEPTPIQRQAIPIGLQ----N-RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE- 1497 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~----g-~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~- 1497 (1832)
..|+|+|.++++.++. | +++++++|||||||++++..+...+... .. ......++++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~-~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSAR-WN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTT-CC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcc-cc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 3799999999999886 4 6699999999999999765554443321 00 001125788999999999999998
Q ss_pred HHHHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHc----cccccCCceeEEEccchhhhcCCChH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMIDMGFEP 1573 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~----~~~~l~~v~llViDEaH~ll~~gf~~ 1573 (1832)
+.++.++ ..+..+.++. ...+++|+|+||++|...+.. ..+....+++|||||||++...+ ..
T Consensus 254 ~~~~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~ 320 (590)
T 3h1t_A 254 KTFTPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NS 320 (590)
T ss_dssp -CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------
T ss_pred HHHHhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hH
Confidence 6666654 3344443332 234689999999999887642 23456789999999999987543 24
Q ss_pred HHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEE---------------
Q psy6409 1574 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV--------------- 1638 (1832)
Q Consensus 1574 ~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v--------------- 1638 (1832)
.+..++..++ ..++++||||+..........++..+...
T Consensus 321 ~~~~il~~~~--------------------------~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~ 374 (590)
T 3h1t_A 321 NWREILEYFE--------------------------PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPY 374 (590)
T ss_dssp -CHHHHHHST--------------------------TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCE
T ss_pred HHHHHHHhCC--------------------------cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCc
Confidence 5566666664 25799999998754332233333333221
Q ss_pred ---EEcccCCC-------------CcceEEEEEEcch-------hhHHHH----HHHHHHh-CCCCcEEEEECchhHHHH
Q psy6409 1639 ---YIGSVGKP-------------TERIEQIVYILSE-------QDKRKK----LMEVLNR-GVKKPVIIFVNQKKGADV 1690 (1832)
Q Consensus 1639 ---~i~~~~~~-------------~~~i~q~~~~~~~-------~~k~~~----l~~~l~~-~~~~~vIVFv~s~~~a~~ 1690 (1832)
.+...... ...+....+.... ..+... +...+.. ....++||||+++.+|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~ 454 (590)
T 3h1t_A 375 RVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454 (590)
T ss_dssp EEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHH
T ss_pred EEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHH
Confidence 11100000 0000000000000 111122 3333333 345799999999999999
Q ss_pred HHHHHHHcCCc--------EEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCCCCHHHH
Q psy6409 1691 LAKGLEKLGYN--------ACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759 (1832)
Q Consensus 1691 l~~~L~~~~~~--------v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P~s~~~y 1759 (1832)
++..|...+.. +..+||.+++ +|..+++.|++|+.+ |||||+++++|||+|+|++||+++.|.|...|
T Consensus 455 l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~ 533 (590)
T 3h1t_A 455 MRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEF 533 (590)
T ss_dssp HHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHH
T ss_pred HHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHH
Confidence 99999876432 7788998764 799999999998877 89999999999999999999999999999999
Q ss_pred HHHhcccccCCC
Q psy6409 1760 THRIGRTGRAGK 1771 (1832)
Q Consensus 1760 iQRiGRaGR~g~ 1771 (1832)
+||+||+||.+.
T Consensus 534 ~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 534 KQIVGRGTRLRE 545 (590)
T ss_dssp HHHHTTSCCCBG
T ss_pred HHHHhhhcccCc
Confidence 999999999764
No 129
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=305.98 Aligned_cols=203 Identities=36% Similarity=0.572 Sum_probs=180.1
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCc
Q psy6409 729 NWKEAS--LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806 (1832)
Q Consensus 729 ~f~~~~--L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~ 806 (1832)
+|++++ +++.++++|.++||..|+|+|.++++.++.|+|+|++||||||||++|++|++..+..... ....++
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~~~ 127 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRNGT 127 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCC
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccCCc
Confidence 566666 9999999999999999999999999999999999999999999999999999988765321 123478
Q ss_pred EEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc-cccCCceeEEE
Q psy6409 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVL 885 (1832)
Q Consensus 807 ~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~-~~l~~~~~lVi 885 (1832)
++|||+||++||.|+++.+++++...++.+..++||.....+...+..+++|+|+|||+|.+.+.... +.+.++++|||
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999999999999999999999999999999999999888888888899999999999999887653 67899999999
Q ss_pred ecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 886 DEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
||||+|++++|++.+..|+..++ ...|+++||||+|+.+..+++.++.++.
T Consensus 208 DEah~l~~~~~~~~l~~i~~~~~-------------------------~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 208 DEADRILDVGFEEELKQIIKLLP-------------------------TRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHSC-------------------------SSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cChHHHhhhhHHHHHHHHHHhCC-------------------------CCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999885 2379999999999999999999988654
No 130
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=1.6e-30 Score=339.03 Aligned_cols=286 Identities=20% Similarity=0.192 Sum_probs=209.1
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEE
Q psy6409 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 1513 (1832)
Q Consensus 1434 i~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~ 1513 (1832)
....+.|++++++||||||||+.+ +..+.. .+.++|++||++||.|+++.+.+. |+.+..
T Consensus 149 ~ar~l~rk~vlv~apTGSGKT~~a----l~~l~~------------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 149 DARAMQRKIIFHSGPTNSGKTYHA----IQKYFS------------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHH----HHHHHH------------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH----HHHHHh------------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 345678999999999999999833 333222 123599999999999999999886 677888
Q ss_pred EECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCCCCCch
Q psy6409 1514 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 1593 (1832)
Q Consensus 1514 l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~~~~~~ 1593 (1832)
++|+...... ......+++++|++.+. ....+++|||||||+|++.+|+..+..++..++.
T Consensus 209 ltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~--------- 269 (677)
T 3rc3_A 209 VTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA--------- 269 (677)
T ss_dssp ECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE---------
T ss_pred EECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCc---------
Confidence 9998664110 00112678888876432 3567899999999999999999999998887751
Q ss_pred hhhHHHHHhhhccccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC
Q psy6409 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 1673 (1832)
Q Consensus 1594 ~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~ 1673 (1832)
...+++++|||. +.+..+.... ..+..+. ....... .. ..... +..+...
T Consensus 270 ---------------~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~--~~~r~~~-l~----~~~~~------l~~l~~~ 319 (677)
T 3rc3_A 270 ---------------EEVHLCGEPAAI-DLVMELMYTT-GEEVEVR--DYKRLTP-IS----VLDHA------LESLDNL 319 (677)
T ss_dssp ---------------EEEEEEECGGGH-HHHHHHHHHH-TCCEEEE--ECCCSSC-EE----ECSSC------CCSGGGC
T ss_pred ---------------cceEEEeccchH-HHHHHHHHhc-CCceEEE--Eeeecch-HH----HHHHH------HHHHHhc
Confidence 347899999995 3344444332 2232221 1111111 00 00000 0011112
Q ss_pred CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC--CCCcEEEEcccccccCCCCCCCEEEEeC
Q psy6409 1674 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG--GSKDILVATDVAGRGIDIKDVSMVINYD 1751 (1832)
Q Consensus 1674 ~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~--g~~~VLVATdvl~~GIDip~v~~VI~~d 1751 (1832)
....||||++++.++.++..|...++.+..+||+|++.+|..+++.|++ |+++|||||+++++|||+ +|++||+++
T Consensus 320 -~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 320 -RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp -CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESC
T ss_pred -CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECC
Confidence 3456899999999999999999999999999999999999999999999 999999999999999999 899999999
Q ss_pred C--------------CCCHHHHHHHhcccccCCCc---cEEEEEeeCCChhHHHHHH
Q psy6409 1752 M--------------AKSIEDYTHRIGRTGRAGKE---GLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1752 ~--------------P~s~~~yiQRiGRaGR~g~~---G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+ |.+..+|+||+|||||.|.. |.|+. +.+.+...+..+.
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~~~~~ 453 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLLKEIL 453 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHHHHHH
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHHHHHH
Confidence 9 78999999999999999865 55544 4444544444443
No 131
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=7.1e-30 Score=289.12 Aligned_cols=204 Identities=40% Similarity=0.669 Sum_probs=183.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEE
Q psy6409 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808 (1832)
Q Consensus 729 ~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~ 808 (1832)
+|++++|++.++++|.+.||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+.... ....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ------ERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC------CTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc------ccCCCCcE
Confidence 699999999999999999999999999999999999999999999999999999999998764211 12357899
Q ss_pred EEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecc
Q psy6409 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888 (1832)
Q Consensus 809 LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEa 888 (1832)
||++||++|+.|+.+.+.+++.. +++..++||.....+...+..+++|+|+||+++.+.+.++.+.+..+++||+|||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred EEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 99999999999999999998764 6788899999887777777789999999999999999888888999999999999
Q ss_pred hhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCcEEEE
Q psy6409 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965 (1832)
Q Consensus 889 H~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~ 965 (1832)
|++.+++|...+..++..++ ...|++++|||+|+.+..++..++.+|..+.+
T Consensus 154 h~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATP-------------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSC-------------------------TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hHhhccchHHHHHHHHHhCC-------------------------ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999988764 24799999999999999999999999987754
No 132
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=3e-29 Score=314.95 Aligned_cols=342 Identities=22% Similarity=0.275 Sum_probs=249.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|+ .|+++|....-.+..|+ |+.+.||+|||++|.+|++...+ .|..+.|++|+..||.|-++++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 565 69999999999999888 99999999999999999985432 3667999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcC--------------------------------------------------CchHHHHHHHhcC
Q psy6409 826 NKFGTPLGIRTVLVVGG--------------------------------------------------LSREEQGFRLRLG 855 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg--------------------------------------------------~~~~~~~~~l~~~ 855 (1832)
..+...+|++|++++.. ++..+.... -.
T Consensus 137 ~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~ 214 (822)
T 3jux_A 137 GPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YL 214 (822)
T ss_dssp HHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HH
T ss_pred HHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hc
Confidence 99999999999999982 221111111 24
Q ss_pred CceeecCHHHHH-HHHHccc------cccCCceeEEEecchhhh-cCC------------ChH---HHHHHHHhCC----
Q psy6409 856 CEIVIATPGRLI-DVLENRY------LVLNQCTYIVLDEADRMI-DMG------------FEP---DVQKILEYMP---- 908 (1832)
Q Consensus 856 ~~IlV~TP~rL~-d~l~~~~------~~l~~~~~lViDEaH~l~-d~g------------f~~---~i~~Il~~l~---- 908 (1832)
|+|.++|..-+- |.|..+. .....+.|.||||+|.++ |.. -.. .+..++..+.
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 899999998774 5554332 234568999999999754 211 011 1111111111
Q ss_pred -------------------------CCCCC---------------------------------------------CCCch
Q psy6409 909 -------------------------VTNLK---------------------------------------------PDTED 918 (1832)
Q Consensus 909 -------------------------~~~~~---------------------------------------------~~~~~ 918 (1832)
..++. +....
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 00000 00000
Q ss_pred hHHHHHHHHhhc------------------cccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EE
Q psy6409 919 AEDENKLLANYN------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IV 979 (1832)
Q Consensus 919 ~~~~~~ll~~~~------------------~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q-~~ 979 (1832)
.+.+...+..-+ -.+.+..+.++|+|+......|...|-- ..+.+ +...+...+.+ ..
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~I-Ptnkp~~R~d~~d~ 451 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVI-PTHKPMIRKDHDDL 451 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEEC-CCSSCCCCEECCCE
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEE-CCCCCcceeecCcE
Confidence 011111110000 0133568999999999888888777743 23333 34444445544 34
Q ss_pred EEcchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec
Q psy6409 980 YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057 (1832)
Q Consensus 980 ~~~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT 1057 (1832)
.+.....|...+.+.+... .+.|+||||+|+..++.++..|...|+++.++||+..+.++..+...|+.| .|+|||
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 5667888999988887653 567899999999999999999999999999999997666666677777776 599999
Q ss_pred ccccccCCCc--------CcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCc
Q psy6409 1058 DVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109 (1832)
Q Consensus 1058 dv~~rGlDip--------~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~ 1109 (1832)
|+|+||+||+ ++.+||||++|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999999998 667999999999999999999999999999999999999884
No 133
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=7e-30 Score=292.23 Aligned_cols=211 Identities=29% Similarity=0.535 Sum_probs=180.4
Q ss_pred CCCCCCcccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhc
Q psy6409 720 GGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799 (1832)
Q Consensus 720 ~~~~p~p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~ 799 (1832)
+.-.+....+|++++|++.++++|.+.||..|+|+|.++++.+++|+|++++||||||||++|++|++..+..
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~------- 78 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP------- 78 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC-------
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc-------
Confidence 4444555678999999999999999999999999999999999999999999999999999999999976421
Q ss_pred cccCCCcEEEEEccchhHHHHHHHHHHHhcCCC-CCeEEEEEcCCchHHHHHHHhc-CCceeecCHHHHHHHHHcccccc
Q psy6409 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVL 877 (1832)
Q Consensus 800 ~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~-~i~v~~~~Gg~~~~~~~~~l~~-~~~IlV~TP~rL~d~l~~~~~~l 877 (1832)
...++++||++||++|+.|+.+.+.+++... ++++..++||.....+...+.. .++|+|+||++|.+++.+..+.+
T Consensus 79 --~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 79 --VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp --CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred --cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 2345789999999999999999999998776 7999999999987777666654 47999999999999998888889
Q ss_pred CCceeEEEecchhhhc-CCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHh
Q psy6409 878 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSY 956 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~d-~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~ 956 (1832)
..+++|||||||++++ .+|...+..++..++ ...|++++|||+|+.+..++..+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~-------------------------~~~~~i~~SAT~~~~~~~~~~~~ 211 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTP-------------------------HEKQVMMFSATLSKEIRPVCRKF 211 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC-------------------------SSSEEEEEESCCCTTTHHHHHTT
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC-------------------------CcCeEEEEEeecCHHHHHHHHHH
Confidence 9999999999999987 478888888877664 24799999999999999999999
Q ss_pred cCCCcEEE
Q psy6409 957 LRRPATVY 964 (1832)
Q Consensus 957 l~~p~~v~ 964 (1832)
+.+|..+.
T Consensus 212 ~~~p~~i~ 219 (220)
T 1t6n_A 212 MQDPMEIF 219 (220)
T ss_dssp CSSCEEEE
T ss_pred cCCCeEEe
Confidence 99997764
No 134
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=4.9e-28 Score=304.10 Aligned_cols=342 Identities=21% Similarity=0.250 Sum_probs=249.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|. .|+++|.-..-.+..|+ |..+.||+|||++|.+|++...+ .|..|.||+|+..||.|-+.++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 576 79999999998888887 99999999999999999975432 3677999999999999999999
Q ss_pred HHhcCCCCCeEEEEECC--------------------------------------------------cchHHHHHHhhcC
Q psy6409 1501 NKFGTPLGIRTVLVVGG--------------------------------------------------LSREEQGFRLRLG 1530 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg--------------------------------------------------~~~~~~~~~l~~~ 1530 (1832)
..+...+|++|.+++.. .+..+... .-.
T Consensus 137 ~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~ 214 (822)
T 3jux_A 137 GPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYL 214 (822)
T ss_dssp HHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHH
T ss_pred HHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--Hhc
Confidence 99999999999999882 11111111 124
Q ss_pred CcEEEeCHHHH-HHHHHccc------cccCCceeEEEccchhhhcC---------C----ChHHHHHHHHhCCCCCC---
Q psy6409 1531 CEIVIATPGRL-IDVLENRY------LVLNQCTYIVLDEADRMIDM---------G----FEPDVQKILEYMPVTNL--- 1587 (1832)
Q Consensus 1531 ~~IiVaTP~rl-~~~l~~~~------~~l~~v~llViDEaH~ll~~---------g----f~~~l~~Il~~l~~~~~--- 1587 (1832)
|||+.+|..-| .+.|+.+. .....+.+.||||+|.++=. | -...+..+....+....
T Consensus 215 ~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~d 294 (822)
T 3jux_A 215 CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKD 294 (822)
T ss_dssp SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTT
T ss_pred CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCc
Confidence 89999999876 36665432 23456899999999975411 0 11112222211111100
Q ss_pred ----------------------------CCCCchhhh----HHHHHhhh--c----------------------------
Q psy6409 1588 ----------------------------KPDTEDAED----ENKLLANY--N---------------------------- 1605 (1832)
Q Consensus 1588 ----------------------------~~~~~~~~~----~~~l~~~~--~---------------------------- 1605 (1832)
..+...... ...+.+.. .
T Consensus 295 y~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~ 374 (822)
T 3jux_A 295 FTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRY 374 (822)
T ss_dssp EEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCC
T ss_pred EEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcC
Confidence 000000000 00000000 0
Q ss_pred ------------------------------cccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEE-EE
Q psy6409 1606 ------------------------------SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IV 1654 (1832)
Q Consensus 1606 ------------------------------~~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q-~~ 1654 (1832)
.-+.+..+.+||+|+......+...|..+ .+.+ +...+...+.+ ..
T Consensus 375 s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~ 451 (822)
T 3jux_A 375 SGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDL 451 (822)
T ss_dssp GGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCE
T ss_pred chHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcE
Confidence 00123468899999998888887777433 3333 44555555554 34
Q ss_pred EEcchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc
Q psy6409 1655 YILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732 (1832)
Q Consensus 1655 ~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT 1732 (1832)
.+.....|...++..+... ...|+||||+|+..++.|+..|...|+++.++||+..+.++..+...|+.| .|+|||
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVAT 529 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIAT 529 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEE
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEc
Confidence 5667788999988887653 567999999999999999999999999999999997776777777777776 599999
Q ss_pred ccccccCCCC--------CCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCCh
Q psy6409 1733 DVAGRGIDIK--------DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784 (1832)
Q Consensus 1733 dvl~~GIDip--------~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~ 1784 (1832)
++++||+||+ +..+||++++|.|...|+||+|||||.|.+|.+++|++.+|.
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 9999999998 667999999999999999999999999999999999999874
No 135
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=1.6e-29 Score=346.18 Aligned_cols=319 Identities=18% Similarity=0.154 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 1501 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~ 1501 (1832)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+.. ....++|||||+ .|+.|+..++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 47999999999998864 589999999999999998877665532 233479999999 99999999997
Q ss_pred HhcCCCCCeEEEEECCcchHHHHH--HhhcCCcEEEeCHHHHHHHHHc-cccccCCceeEEEccchhhhcCCChH--HHH
Q psy6409 1502 KFGTPLGIRTVLVVGGLSREEQGF--RLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEP--DVQ 1576 (1832)
Q Consensus 1502 ~~~~~~g~~v~~l~gg~~~~~~~~--~l~~~~~IiVaTP~rl~~~l~~-~~~~l~~v~llViDEaH~ll~~gf~~--~l~ 1576 (1832)
+.+ ++.+..+.|+........ ......+|+|+|++.+...... ..+...++++|||||||++...+... .+.
T Consensus 221 ~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 221 RRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 654 555555544332211110 1123579999999977532211 22445689999999999986544221 122
Q ss_pred HHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHH---HHH------------------------
Q psy6409 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVE---RLA------------------------ 1628 (1832)
Q Consensus 1577 ~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~---~~~------------------------ 1628 (1832)
.+..... ....++++|||+.. ... .+.
T Consensus 298 ~l~~L~~-------------------------~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i 352 (968)
T 3dmq_A 298 AIEQLAE-------------------------HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPV 352 (968)
T ss_dssp HHHHHHT-------------------------TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHH
T ss_pred HHHHHhh-------------------------cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHH
Confidence 2211110 12357888998732 000 000
Q ss_pred ----HHhcC----------------------------------------------------CCcEEEEcc---cCCCCcc
Q psy6409 1629 ----RSYLR----------------------------------------------------RPATVYIGS---VGKPTER 1649 (1832)
Q Consensus 1629 ----~~~l~----------------------------------------------------~p~~v~i~~---~~~~~~~ 1649 (1832)
..... ....+.... .+.+...
T Consensus 353 ~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~ 432 (968)
T 3dmq_A 353 ADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRE 432 (968)
T ss_dssp HHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhh
Confidence 00000 000000000 0000000
Q ss_pred eEEEE---------------------------------------------EEcchhhHHHHHHHHHHhCCCCcEEEEECc
Q psy6409 1650 IEQIV---------------------------------------------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 1684 (1832)
Q Consensus 1650 i~q~~---------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s 1684 (1832)
+.... ..+....|...+..++......++||||++
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~ 512 (968)
T 3dmq_A 433 LHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAK 512 (968)
T ss_dssp CCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSS
T ss_pred eEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCc
Confidence 00000 122334578889999988888899999999
Q ss_pred hhHHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHhhCCC--CcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHH
Q psy6409 1685 KKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761 (1832)
Q Consensus 1685 ~~~a~~l~~~L~~-~~~~v~~lHg~ls~~~R~~il~~F~~g~--~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQ 1761 (1832)
+.+++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|.++..|+|
T Consensus 513 ~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q 592 (968)
T 3dmq_A 513 AATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592 (968)
T ss_dssp THHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHH
Confidence 9999999999994 6999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhcccccCCCccEEEEEeeC
Q psy6409 1762 RIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1762 RiGRaGR~g~~G~ai~~~~~ 1781 (1832)
|+||+||.|+.|.++++...
T Consensus 593 ~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 593 RIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp HHHTTSCSSSCSCCEEEEEE
T ss_pred HhhccccCCCCceEEEEEec
Confidence 99999999998866666443
No 136
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=1.6e-29 Score=346.21 Aligned_cols=333 Identities=18% Similarity=0.132 Sum_probs=228.3
Q ss_pred CCCcHHHHHHHHHHHc--CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQ--NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~--grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.+|+|+|.+++..++. +.++|++++||+|||++++..+...+.. ....++|||||+ .|+.|+..++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 5799999999998886 4579999999999999998877655421 234479999999 99999999997
Q ss_pred HhcCCCCCeEEEEEcCCchHHHHH--HHhcCCceeecCHHHHHHHHHc-cccccCCceeEEEecchhhhcCCChH-HHHH
Q psy6409 827 KFGTPLGIRTVLVVGGLSREEQGF--RLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEP-DVQK 902 (1832)
Q Consensus 827 ~~~~~~~i~v~~~~Gg~~~~~~~~--~l~~~~~IlV~TP~rL~d~l~~-~~~~l~~~~~lViDEaH~l~d~gf~~-~i~~ 902 (1832)
+.. ++.+..+.|+........ ......+|+|+|++.+...... ..+....+++|||||||++...+... ....
T Consensus 221 ~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 221 RRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 654 556555544332211100 1112479999999988532211 22345689999999999986544221 1111
Q ss_pred HHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-H---HHHHHHH-----------------------
Q psy6409 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-A---VERLARS----------------------- 955 (1832)
Q Consensus 903 Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~---v~~~~~~----------------------- 955 (1832)
++..+ . .....++++|||.-. . +..+...
T Consensus 298 ~l~~L----------------------~--~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~ 353 (968)
T 3dmq_A 298 AIEQL----------------------A--EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVA 353 (968)
T ss_dssp HHHHH----------------------H--TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------h--hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHH
Confidence 11111 0 012357888888621 0 0000000
Q ss_pred -----hcC----------------------------------------------------CCcEEEEccc---CCCCcce
Q psy6409 956 -----YLR----------------------------------------------------RPATVYIGSV---GKPTERI 975 (1832)
Q Consensus 956 -----~l~----------------------------------------------------~p~~v~~~~~---~~~~~~i 975 (1832)
+.. ....+..... ..+...+
T Consensus 354 ~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~ 433 (968)
T 3dmq_A 354 DAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKREL 433 (968)
T ss_dssp HHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhhe
Confidence 000 0000000000 0000000
Q ss_pred EEEE---------------------------------------------EEcchhhHHHHHHHHHHcCCCCCEEEEEccc
Q psy6409 976 EQIV---------------------------------------------YILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1010 (1832)
Q Consensus 976 ~q~~---------------------------------------------~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~ 1010 (1832)
.... ..+....|...|.+++....+.++||||+++
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~ 513 (968)
T 3dmq_A 434 HTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKA 513 (968)
T ss_dssp CEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSST
T ss_pred EeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcH
Confidence 0000 1223446788899999887888999999999
Q ss_pred chHHHHHHHHHH-cCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHH
Q psy6409 1011 KGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGS--KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR 1087 (1832)
Q Consensus 1011 ~~~~~l~~~L~~-~g~~v~~lhg~~~~~~R~~il~~F~~G~--~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr 1087 (1832)
..++.++..|.. .|+.+..+||+|++.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+|.++..|+|+
T Consensus 514 ~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~ 593 (968)
T 3dmq_A 514 ATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQR 593 (968)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHH
Confidence 999999999994 6999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1119 (1832)
+||+||.|+.|.+++++...+......+.+.+
T Consensus 594 ~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 594 IGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred hhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 99999999998766665444433444444444
No 137
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=9.8e-28 Score=309.18 Aligned_cols=310 Identities=19% Similarity=0.233 Sum_probs=214.1
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..|+|+|.+++.++. .++++|++++||+|||++++..+.... . ......+||||| ..|+.|+.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~---------~~~~~~~LIv~P-~~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-K---------ENELTPSLVICP-LSVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-H---------TTCCSSEEEEEC-STTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-h---------cCCCCCEEEEcc-HHHHHHHHHH
Confidence 379999999998874 578999999999999999765544332 1 123457999999 4689999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHH
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il 1579 (1832)
+.+++. +.++..+.|+... .....++|+|+|++.+..... +....+++||+||||++...+ ......+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999875 4556666665432 112357999999998865433 344578999999999986543 1222333
Q ss_pred HhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChH-HHHHH------------------------------
Q psy6409 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-VERLA------------------------------ 1628 (1832)
Q Consensus 1580 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~-~~~~~------------------------------ 1628 (1832)
..+ .....+++|||+... ..++.
T Consensus 173 ~~l--------------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 226 (500)
T 1z63_A 173 KEL--------------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226 (500)
T ss_dssp HTS--------------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH
T ss_pred Hhh--------------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH
Confidence 333 124679999998432 22111
Q ss_pred ------HHhcCCCcEEEEccc-----CCCCcceEEEEEE-cc--------------------------------------
Q psy6409 1629 ------RSYLRRPATVYIGSV-----GKPTERIEQIVYI-LS-------------------------------------- 1658 (1832)
Q Consensus 1629 ------~~~l~~p~~v~i~~~-----~~~~~~i~q~~~~-~~-------------------------------------- 1658 (1832)
..++ .|..+..... ...+......+.. ..
T Consensus 227 ~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 305 (500)
T 1z63_A 227 MAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLK 305 (500)
T ss_dssp HHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 1111 1222111110 0011111111111 11
Q ss_pred -----------------hhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHH
Q psy6409 1659 -----------------EQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELAL 1718 (1832)
Q Consensus 1659 -----------------~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il 1718 (1832)
...|...+.+++... .+.++||||+++..++.++..|... |+.+..+||++++.+|..++
T Consensus 306 ~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 306 QIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 123444555555543 5679999999999999999999885 99999999999999999999
Q ss_pred HHhhCC-CCc-EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEE--EEEeeCCC
Q psy6409 1719 NSLKGG-SKD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDD 1783 (1832)
Q Consensus 1719 ~~F~~g-~~~-VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a--i~~~~~~d 1783 (1832)
+.|++| .++ +||||+++++|+|+|.+++||+||+|+|+..|+|++||++|.|+.+.+ +.|+..+.
T Consensus 386 ~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 386 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp HHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred HHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 999998 565 799999999999999999999999999999999999999999977654 55666653
No 138
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.3e-27 Score=323.63 Aligned_cols=323 Identities=17% Similarity=0.123 Sum_probs=221.1
Q ss_pred CHHHHHHHHHcC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEecCCChHHHHHHHHHHHHHhhch
Q psy6409 736 PTEILEIIEKIG-------YAEPTPIQRQAIPIGLQ--------------NRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794 (1832)
Q Consensus 736 ~~~l~~~l~~~g-------~~~pt~iQ~~ai~~il~--------------grdvIv~apTGSGKTla~llpil~~i~~~~ 794 (1832)
++.++..|..+- ...|+|+|..|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 250 ~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-- 326 (1038)
T 2w00_A 250 KHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-- 326 (1038)
T ss_dssp HHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--
T ss_pred hHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--
Confidence 456667776542 23599999999999875 368999999999999997 666654421
Q ss_pred hhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHHHHHHHh-cCCceeecCHHHHHHHHHcc
Q psy6409 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENR 873 (1832)
Q Consensus 795 ~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~-~~~~IlV~TP~rL~d~l~~~ 873 (1832)
.....++|||+|+++|+.|+...+..++.. .+.|+.+.......+. .+++|+|+||++|.+++...
T Consensus 327 -------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 327 -------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp -------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred -------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 123468999999999999999999998643 1235555555544553 46899999999999887653
Q ss_pred c--cccCCceeEEEecchhhhcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHH-
Q psy6409 874 Y--LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE- 950 (1832)
Q Consensus 874 ~--~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~- 950 (1832)
. ..+..+.+||+||||++.. +..+..|...+| ..++++||||+.....
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p--------------------------~a~~lgfTATP~~~~~~ 444 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK--------------------------RYYQFGFTGTPIFPENA 444 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS--------------------------SEEEEEEESSCCCSTTC
T ss_pred cchhccccccEEEEEccchhcc---hHHHHHHHHhCC--------------------------cccEEEEeCCccccccc
Confidence 2 2456789999999999764 333555555553 3689999999864221
Q ss_pred ---HHHHHhcCC-----------------CcEEEEcccCCCC-------c-----ceEEEEEEcchhhHHHHHHH-HHHc
Q psy6409 951 ---RLARSYLRR-----------------PATVYIGSVGKPT-------E-----RIEQIVYILSEQDKRKKLME-VLNR 997 (1832)
Q Consensus 951 ---~~~~~~l~~-----------------p~~v~~~~~~~~~-------~-----~i~q~~~~~~~~~k~~~L~~-~l~~ 997 (1832)
.....++.. |..+......... . .+.+. ..+....+...+.. ++..
T Consensus 445 ~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~ 523 (1038)
T 2w00_A 445 LGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNN 523 (1038)
T ss_dssp TTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 011122222 2222111100000 0 00000 00011222333332 2221
Q ss_pred ---C--------CCCCEEEEEcccchHHHHHHHHHHcC------------CcEE-EEcCC----------C---------
Q psy6409 998 ---G--------VKKPVIIFVNQKKGADVLAKGLEKLG------------YNAC-TLHGG----------K--------- 1034 (1832)
Q Consensus 998 ---~--------~~~~vIVFv~s~~~~~~l~~~L~~~g------------~~v~-~lhg~----------~--------- 1034 (1832)
. .+.++||||+++..|..+++.|...+ +.+. ++||+ +
T Consensus 524 ~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~ 603 (1038)
T 2w00_A 524 FRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSA 603 (1038)
T ss_dssp HHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGG
T ss_pred HHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccc
Confidence 1 23579999999999999999998764 5554 45542 2
Q ss_pred -CHH-----------------------------HHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHH
Q psy6409 1035 -GQE-----------------------------QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084 (1832)
Q Consensus 1035 -~~~-----------------------------~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~y 1084 (1832)
++. .|..+++.|++|.++|||+|+++.+|+|+|.+ .|+++|.|.+...|
T Consensus 604 ~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~l 682 (1038)
T 2w00_A 604 MDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGL 682 (1038)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccce
Confidence 222 48889999999999999999999999999999 78899999999999
Q ss_pred HHHhcccccCCCC----cEEEEEec
Q psy6409 1085 THRIGRTGRAGKE----GLAVSFCT 1105 (1832)
Q Consensus 1085 vQr~GRaGR~g~~----G~ai~~~~ 1105 (1832)
+|++||++|.+.. |.++.|+.
T Consensus 683 iQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 683 MQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred eehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999998753 77777775
No 139
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=1.4e-27 Score=307.84 Aligned_cols=309 Identities=19% Similarity=0.239 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
..|+|+|.++++.+. .++++|++++||+|||++++..+.. +.. ......+||||| ..|+.|+.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~---------~~~~~~~LIv~P-~~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKK---------ENELTPSLVICP-LSVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHH---------TTCCSSEEEEEC-STTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHh---------cCCCCCEEEEcc-HHHHHHHHHH
Confidence 479999999998764 5789999999999999997654443 221 123467999999 5699999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHH
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il 904 (1832)
+.+++. ++++..+.|+... ......+|+|+||+++..... +....+++||+||||++.+.+ ......+
T Consensus 105 ~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l 172 (500)
T 1z63_A 105 LSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAV 172 (500)
T ss_dssp HHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHH
T ss_pred HHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHH
Confidence 999875 4566666665532 112358999999999865432 344578999999999986543 1222333
Q ss_pred HhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh-HHHHHH------------------------------
Q psy6409 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVERLA------------------------------ 953 (1832)
Q Consensus 905 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~-~v~~~~------------------------------ 953 (1832)
..+ .....+++|||... ....+.
T Consensus 173 ~~l--------------------------~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~ 226 (500)
T 1z63_A 173 KEL--------------------------KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226 (500)
T ss_dssp HTS--------------------------CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH
T ss_pred Hhh--------------------------ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccH
Confidence 222 12467999999732 111111
Q ss_pred ------HHhcCCCcEEEEccc-----CCCCcceEEEEEE-c---------------------------------------
Q psy6409 954 ------RSYLRRPATVYIGSV-----GKPTERIEQIVYI-L--------------------------------------- 982 (1832)
Q Consensus 954 ------~~~l~~p~~v~~~~~-----~~~~~~i~q~~~~-~--------------------------------------- 982 (1832)
..++ .|..+..... ...+......+.. .
T Consensus 227 ~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 305 (500)
T 1z63_A 227 MAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLK 305 (500)
T ss_dssp HHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 0111 2222211100 0111111111111 0
Q ss_pred ----------------chhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHH
Q psy6409 983 ----------------SEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELAL 1043 (1832)
Q Consensus 983 ----------------~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il 1043 (1832)
....|...+.+++... .+.++||||+++..++.++..|... |+.+..+||++++.+|..++
T Consensus 306 ~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~ 385 (500)
T 1z63_A 306 QIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 385 (500)
T ss_dssp HHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHH
T ss_pred HHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHH
Confidence 1123445555555542 5679999999999999999999885 99999999999999999999
Q ss_pred HHHhCC-CCc-EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcE--EEEEecCC
Q psy6409 1044 NSLKGG-SKD-ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1107 (1832)
Q Consensus 1044 ~~F~~G-~~~-VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~--ai~~~~~~ 1107 (1832)
+.|++| ..+ +||||+++++|||+|++++||+||+|.++..|.|++||++|.|+.+. ++.|++.+
T Consensus 386 ~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 386 SKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999998 555 79999999999999999999999999999999999999999998754 46667765
No 140
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=2e-27 Score=321.83 Aligned_cols=311 Identities=17% Similarity=0.110 Sum_probs=213.4
Q ss_pred CCCcHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1424 AEPTPIQRQAIPIGLQ--------------NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~--------------g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
..|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .....++|||+|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~---------~~~~~rvLvlvpr 339 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE---------LDFIDKVFFVVDR 339 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---------CTTCCEEEEEECG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---------cCCCceEEEEeCc
Confidence 3699999999999875 368999999999999997 666654432 1234689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEECCcchHHHHHHhh-cCCcEEEeCHHHHHHHHHccc--cccCCceeEEEccchhh
Q psy6409 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR-LGCEIVIATPGRLIDVLENRY--LVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1490 reLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~~~~~l~-~~~~IiVaTP~rl~~~l~~~~--~~l~~v~llViDEaH~l 1566 (1832)
++|+.|+...+..++.. .+.++.+.......+. .+++|+|+||++|..++.... ..+..+.+||+||||++
T Consensus 340 ~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs 413 (1038)
T 2w00_A 340 KDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRS 413 (1038)
T ss_dssp GGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchh
Confidence 99999999999998643 1234444444444443 468999999999998876532 24567899999999998
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHHH----HHHHHhcCC--------
Q psy6409 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE----RLARSYLRR-------- 1634 (1832)
Q Consensus 1567 l~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~~----~~~~~~l~~-------- 1634 (1832)
.. +..+..|...+| ..++++||||+..... .....++..
T Consensus 414 ~~---~~~~~~I~~~~p--------------------------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~ 464 (1038)
T 2w00_A 414 QF---GEAQKNLKKKFK--------------------------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVIT 464 (1038)
T ss_dssp HH---HHHHHHHHHHCS--------------------------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHH
T ss_pred cc---hHHHHHHHHhCC--------------------------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHH
Confidence 63 334556666654 3689999999874321 011112222
Q ss_pred ---------CcEEEEcccCCCC-------c-----ceEEEEEEcchhhHHHHHHH-HHHhC-----------CCCcEEEE
Q psy6409 1635 ---------PATVYIGSVGKPT-------E-----RIEQIVYILSEQDKRKKLME-VLNRG-----------VKKPVIIF 1681 (1832)
Q Consensus 1635 ---------p~~v~i~~~~~~~-------~-----~i~q~~~~~~~~~k~~~l~~-~l~~~-----------~~~~vIVF 1681 (1832)
|..+......... . .+.+. ..+....+...+.. ++.+. ...++|||
T Consensus 465 ~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf 543 (1038)
T 2w00_A 465 DAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLA 543 (1038)
T ss_dssp HHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEE
T ss_pred HHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEE
Confidence 2221111100000 0 00000 00011222233332 32211 23579999
Q ss_pred ECchhHHHHHHHHHHHcC------------CcEE-EEcCC----------C----------CH-----------------
Q psy6409 1682 VNQKKGADVLAKGLEKLG------------YNAC-TLHGG----------K----------GQ----------------- 1711 (1832)
Q Consensus 1682 v~s~~~a~~l~~~L~~~~------------~~v~-~lHg~----------l----------s~----------------- 1711 (1832)
|+|+.+|..++..|...+ +.+. ++||+ + ++
T Consensus 544 ~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f 623 (1038)
T 2w00_A 544 VSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHF 623 (1038)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHh
Confidence 999999999999998764 5554 45542 2 22
Q ss_pred ------------HHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc----cEE
Q psy6409 1712 ------------EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE----GLA 1775 (1832)
Q Consensus 1712 ------------~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~----G~a 1775 (1832)
..|..+++.|++|+++|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.+
T Consensus 624 ~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~I 702 (1038)
T 2w00_A 624 KTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNI 702 (1038)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEE
T ss_pred cccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEE
Confidence 147889999999999999999999999999999 788999999999999999999997643 778
Q ss_pred EEEeeC
Q psy6409 1776 VSFCTK 1781 (1832)
Q Consensus 1776 i~~~~~ 1781 (1832)
+.|+..
T Consensus 703 Vdf~~~ 708 (1038)
T 2w00_A 703 VTFRDL 708 (1038)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 877753
No 141
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=4.2e-25 Score=282.11 Aligned_cols=341 Identities=21% Similarity=0.229 Sum_probs=247.9
Q ss_pred cCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|| .||++|..++|.+++|+ |+.+.||||||++|++|++.... .|..++||+||++||.|++..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999975432 2567999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHH-HHHHHccc------cccC---CceeEEEecchhhh-cC
Q psy6409 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLN---QCTYIVLDEADRMI-DM 894 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL-~d~l~~~~------~~l~---~~~~lViDEaH~l~-d~ 894 (1832)
..++..+|+++++++||.+.... ....+++|+||||++| .|+|..+. +.+. .+.++||||||.|+ +.
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred HHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 99999999999999999985443 3445799999999999 89887763 4677 89999999999987 44
Q ss_pred CCh---------------HHHHHHHHhCCCCCC-------------CC--------CCch-hHHH---------------
Q psy6409 895 GFE---------------PDVQKILEYMPVTNL-------------KP--------DTED-AEDE--------------- 922 (1832)
Q Consensus 895 gf~---------------~~i~~Il~~l~~~~~-------------~~--------~~~~-~~~~--------------- 922 (1832)
++. ..+..++..++.... .. -++. ....
T Consensus 219 artPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~ 298 (997)
T 2ipc_A 219 ARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENM 298 (997)
T ss_dssp TTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCH
T ss_pred CCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhH
Confidence 432 245667777753210 00 0000 0000
Q ss_pred -------HHHHHhhc------------------------------------------------------------ccccc
Q psy6409 923 -------NKLLANYN------------------------------------------------------------SKKKY 935 (1832)
Q Consensus 923 -------~~ll~~~~------------------------------------------------------------~~~~~ 935 (1832)
..+.+... -.+.+
T Consensus 299 ~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y 378 (997)
T 2ipc_A 299 ELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLY 378 (997)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhC
Confidence 00000000 00223
Q ss_pred ceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 936 ~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~-~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..+.++|.|.......|...|--+ +.+-+...+......- ..+.....|...+.+-+.. ..+.||||+|.|.+.
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred hHheecCCCchHHHHHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 468889999987777777766543 2223344444444332 3345667777776655543 256799999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q psy6409 1013 ADVLAKGLE----------------------------------------------------------------------- 1021 (1832)
Q Consensus 1013 ~~~l~~~L~----------------------------------------------------------------------- 1021 (1832)
.+.|+..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999998
Q ss_pred -----HcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCc-------------------C-------
Q psy6409 1022 -----KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------S------- 1070 (1832)
Q Consensus 1022 -----~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v-------------------~------- 1070 (1832)
..|++..++.+.-...+-+.|-+.-+.| .|-|||++|+||.||-=- .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 5677777777764433333333333334 589999999999998421 1
Q ss_pred ------------------------------------------------EEEEcCCCCCHhHHHHHhcccccCCCCcEEEE
Q psy6409 1071 ------------------------------------------------MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102 (1832)
Q Consensus 1071 ------------------------------------------------~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~ 1102 (1832)
+||--..+.|..-=.|-.|||||-|.+|.+-.
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 88888889999999999999999999999999
Q ss_pred EecCCC
Q psy6409 1103 FCTKDD 1108 (1832)
Q Consensus 1103 ~~~~~d 1108 (1832)
|++-+|
T Consensus 694 ~LSLeD 699 (997)
T 2ipc_A 694 YVSFDD 699 (997)
T ss_dssp EEESSS
T ss_pred EEECCh
Confidence 999877
No 142
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=4.1e-25 Score=290.87 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=135.1
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+++||||+++..... .. ..+.... .+.......+.......+...++..+.. ..+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~--r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQII--RPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECS--CTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--Ceeeeee--ccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998654221 11 1111111 1100001111222233444555444433 246799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.+++.|...|+.+..+||++++.+|..+++.|+.|.++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
+|||||.| .|.|++|+++.+..+...+.+.
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~ 561 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIEET 561 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999986 6999999999988777777654
No 143
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=247.91 Aligned_cols=182 Identities=37% Similarity=0.601 Sum_probs=148.9
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcC
Q psy6409 1628 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707 (1832)
Q Consensus 1628 ~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg 1707 (1832)
.+.|+.+|..+.++........+.|.+..+....|...|.+++... ..++||||+++..++.++..|...++.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4678999999998888878889999999999999999999999865 458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhH
Q psy6409 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1786 (1832)
Q Consensus 1708 ~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~ 1786 (1832)
+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++. +..+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 7788
Q ss_pred HHHHHHHhhcCCCCCCChhhcCCCC
Q psy6409 1787 FYDLKQMMISSPVSTCPPELLNHPD 1811 (1832)
Q Consensus 1787 ~~~l~~~l~~~~~~~~~~~L~~h~~ 1811 (1832)
+..+.+.+.... +.+|+.|.++.+
T Consensus 167 ~~~l~~~l~~~~-~~~p~~l~~~~~ 190 (191)
T 2p6n_A 167 LMDLKALLLEAK-QKVPPVLQVLHC 190 (191)
T ss_dssp HHHHHHHHHHTT-CCCCHHHHSTTC
T ss_pred HHHHHHHHHHcc-CcCCHHHHhhcC
Confidence 888988887775 799999887643
No 144
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=1.3e-24 Score=286.12 Aligned_cols=173 Identities=23% Similarity=0.247 Sum_probs=132.7
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..|+++||||++...... .. ..+... ..+.......+.......+...++..+... .+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~--~r~~~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQI--IRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEEC--SCTTCCCCCEEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--Ceeeee--eccCCCCCCeEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998754221 11 111111 111111111122223334455555544432 46799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-----CCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-----P~s~~~yiQR 1762 (1832)
|+.|+..|...|+.+.++||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.|..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHHH
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l~ 1791 (1832)
+|||||.+ .|.|++|+++.+..+...+.
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 99999985 89999999998765554443
No 145
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2e-23 Score=266.89 Aligned_cols=341 Identities=20% Similarity=0.222 Sum_probs=247.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
+|| .|+|+|..++|.++.|+ |+.+.||||||++|.+|++.... .|..|+||+||++||.|.+.++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 799 99999999999999998 99999999999999999974332 2557999999999999999999
Q ss_pred HHhcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHH-HHHHHccc------cccC---CceeEEEccchhhh-cC
Q psy6409 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL-IDVLENRY------LVLN---QCTYIVLDEADRMI-DM 1569 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl-~~~l~~~~------~~l~---~v~llViDEaH~ll-~~ 1569 (1832)
..++..+|+++.+++||.+..... ...+++|+|+||++| .+++..+. +.+. .+.++||||||.|+ +.
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 999999999999999998865443 344799999999999 88887763 4677 89999999999987 33
Q ss_pred CC---------------hHHHHHHHHhCCCCCC-------------CC--------CCchh-hhHH--------------
Q psy6409 1570 GF---------------EPDVQKILEYMPVTNL-------------KP--------DTEDA-EDEN-------------- 1598 (1832)
Q Consensus 1570 gf---------------~~~l~~Il~~l~~~~~-------------~~--------~~~~~-~~~~-------------- 1598 (1832)
++ ...+..++..++.... .. -++.. ....
T Consensus 219 artPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~ 298 (997)
T 2ipc_A 219 ARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENM 298 (997)
T ss_dssp TTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCH
T ss_pred CCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhH
Confidence 32 1245566776653210 00 00000 0000
Q ss_pred --------HHHhhhc------------------------------------------------------------cccCc
Q psy6409 1599 --------KLLANYN------------------------------------------------------------SKKKY 1610 (1832)
Q Consensus 1599 --------~l~~~~~------------------------------------------------------------~~~~~ 1610 (1832)
.+.+... .-+.+
T Consensus 299 ~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y 378 (997)
T 2ipc_A 299 ELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLY 378 (997)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhC
Confidence 0000000 00122
Q ss_pred ceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEE-EEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1611 ~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~-~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..+.+||.|.......+...|--+ +.+-+...+....... ..+.....|..++++-+... .+.||||+|.|+..
T Consensus 379 ~kLsGMTGTA~tE~~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~ 455 (997)
T 2ipc_A 379 EKRAGMTGTAKTEEKEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEK 455 (997)
T ss_dssp SEEEEEESSCGGGHHHHHHHHCCC---EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHH
T ss_pred hHheecCCCchHHHHHHHHHhCCC---EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHH
Confidence 356789999988777777766544 2233455555444432 34456677887777655432 57899999999999
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q psy6409 1688 ADVLAKGLE----------------------------------------------------------------------- 1696 (1832)
Q Consensus 1688 a~~l~~~L~----------------------------------------------------------------------- 1696 (1832)
.+.|+..|.
T Consensus 456 SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 535 (997)
T 2ipc_A 456 SERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVH 535 (997)
T ss_dssp HHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhh
Confidence 999999998
Q ss_pred -----HcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCC-------------------C-------
Q psy6409 1697 -----KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV-------------------S------- 1745 (1832)
Q Consensus 1697 -----~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v-------------------~------- 1745 (1832)
..|++..++++.....+.+.|-+.-+.| .|-|||+.++||.||-=- .
T Consensus 536 ~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~ 613 (997)
T 2ipc_A 536 TLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFI 613 (997)
T ss_dssp HHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHH
T ss_pred hhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccc
Confidence 4566766777664444433333333333 489999999999998421 1
Q ss_pred ------------------------------------------------EEEEeCCCCCHHHHHHHhcccccCCCccEEEE
Q psy6409 1746 ------------------------------------------------MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777 (1832)
Q Consensus 1746 ------------------------------------------------~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~ 1777 (1832)
+||-...+.|..-=-|-.||+||-|.+|.+..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF 693 (997)
T 2ipc_A 614 KKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRF 693 (997)
T ss_dssp HHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEE
T ss_pred ccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEE
Confidence 78888889999999999999999999999999
Q ss_pred EeeCCC
Q psy6409 1778 FCTKDD 1783 (1832)
Q Consensus 1778 ~~~~~d 1783 (1832)
|++-+|
T Consensus 694 ~LSLeD 699 (997)
T 2ipc_A 694 YVSFDD 699 (997)
T ss_dssp EEESSS
T ss_pred EEECCh
Confidence 988776
No 146
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=5.7e-24 Score=280.49 Aligned_cols=321 Identities=17% Similarity=0.198 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
.++|||.+++.+++ .+.+.|+..+||+|||+.++..+...+...+. .......+|||+|+ .|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHHH
Confidence 79999999999875 34679999999999999987777665544321 11123569999997 89999
Q ss_pred HHHHHHHhcCCCCCeEEEEECCcchHHH--HHHh-h-----cCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQ--GFRL-R-----LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1496 i~~~~~~~~~~~g~~v~~l~gg~~~~~~--~~~l-~-----~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
+..++.+++.. .+.++.+.||...... .... . ...+|+|+|++.+.... ..+....+++||+||||++-
T Consensus 129 W~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 129 WYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecC
Confidence 99999998654 4566677776543211 1111 1 13789999999886432 23444578999999999885
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCChHH-H------------------HHH
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV-E------------------RLA 1628 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~~~-~------------------~~~ 1628 (1832)
... ......+..+. ....+++|||+-..- . .+.
T Consensus 206 n~~--~~~~~al~~l~--------------------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~ 257 (644)
T 1z3i_X 206 NSD--NQTYLALNSMN--------------------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFK 257 (644)
T ss_dssp TTC--HHHHHHHHHHC--------------------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHH
T ss_pred Chh--hHHHHHHHhcc--------------------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHH
Confidence 432 12222222221 134678888863210 0 000
Q ss_pred HHhc-----------------------------CCCcEEEEccc---CCCCcceEEEEEE-c------------------
Q psy6409 1629 RSYL-----------------------------RRPATVYIGSV---GKPTERIEQIVYI-L------------------ 1657 (1832)
Q Consensus 1629 ~~~l-----------------------------~~p~~v~i~~~---~~~~~~i~q~~~~-~------------------ 1657 (1832)
..|. -.|..+..... ...+....+.+.. .
T Consensus 258 ~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~ 337 (644)
T 1z3i_X 258 KRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV 337 (644)
T ss_dssp HHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG
T ss_pred HhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 0000 00000000000 0000001111100 0
Q ss_pred ----------------------------------------------------------chhhHHHHHHHHHHh---CCCC
Q psy6409 1658 ----------------------------------------------------------SEQDKRKKLMEVLNR---GVKK 1676 (1832)
Q Consensus 1658 ----------------------------------------------------------~~~~k~~~l~~~l~~---~~~~ 1676 (1832)
....|...+..++.. ....
T Consensus 338 ~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~ 417 (644)
T 1z3i_X 338 ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSD 417 (644)
T ss_dssp GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCC
Confidence 012233333333332 3567
Q ss_pred cEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCC
Q psy6409 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMA 1753 (1832)
Q Consensus 1677 ~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P 1753 (1832)
++||||++...++.+...|...|+.+..+||+++..+|..+++.|++|... +||+|+++++|||++.+++||+||+|
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999998764 89999999999999999999999999
Q ss_pred CCHHHHHHHhcccccCCCcc--EEEEEeeCC
Q psy6409 1754 KSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1782 (1832)
Q Consensus 1754 ~s~~~yiQRiGRaGR~g~~G--~ai~~~~~~ 1782 (1832)
+|+..|.|++||++|.|+.. .++.|+...
T Consensus 498 wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 498 WNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999765 455567766
No 147
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.1e-23 Score=277.85 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHH---------cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 749 AEPTPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il---------~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
..++|+|.+++..+. .++..|++.+||+|||++++..+...+...+. ......++|||||+ .|+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-----~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-----CKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-----SSCSCSCEEEEECH-HHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-----ccCCCCcEEEEecH-HHHH
Confidence 369999999999874 34679999999999999988777655433211 11123569999997 8999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcCCchHHH--HHHHh------cCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 820 QIEEETNKFGTPLGIRTVLVVGGLSREEQ--GFRLR------LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 820 Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~~--~~~l~------~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
|+..++.+++.. .+.++.++||...... ..... ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 128 qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 128 NWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 999999998654 5667777777543221 11111 14789999999986432 2334457899999999988
Q ss_pred hcCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChH-H------------------HHH
Q psy6409 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA-V------------------ERL 952 (1832)
Q Consensus 892 ~d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~-v------------------~~~ 952 (1832)
-+.. ......+..+. ....+++|||.-.. + ..|
T Consensus 205 kn~~--~~~~~al~~l~--------------------------~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F 256 (644)
T 1z3i_X 205 KNSD--NQTYLALNSMN--------------------------AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEF 256 (644)
T ss_dssp CTTC--HHHHHHHHHHC--------------------------CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHH
T ss_pred CChh--hHHHHHHHhcc--------------------------cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHH
Confidence 6432 12222222221 13456777774110 0 000
Q ss_pred HHHhcC-----------------------------CCcEEEEcc--c-CCCCcceEEEEE--------------------
Q psy6409 953 ARSYLR-----------------------------RPATVYIGS--V-GKPTERIEQIVY-------------------- 980 (1832)
Q Consensus 953 ~~~~l~-----------------------------~p~~v~~~~--~-~~~~~~i~q~~~-------------------- 980 (1832)
...|.. .|..+.-.. . ...+....+.+.
T Consensus 257 ~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~ 336 (644)
T 1z3i_X 257 KKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP 336 (644)
T ss_dssp HHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG
T ss_pred HHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 000000 000000000 0 000000011000
Q ss_pred ---------------------------------------------------------EcchhhHHHHHHHHHHc---CCC
Q psy6409 981 ---------------------------------------------------------ILSEQDKRKKLMEVLNR---GVK 1000 (1832)
Q Consensus 981 ---------------------------------------------------------~~~~~~k~~~L~~~l~~---~~~ 1000 (1832)
......|...+..++.. ..+
T Consensus 337 ~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 337 VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCC
Confidence 00112344444444432 356
Q ss_pred CCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc---EEEecccccccCCCcCcCEEEEcCC
Q psy6409 1001 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDM 1077 (1832)
Q Consensus 1001 ~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~---VLVaTdv~~rGlDip~v~~VI~~d~ 1077 (1832)
.++||||+....++.+...|...|+.+..+||++++.+|..+++.|++|... +||+|+++++|||++++++||+||+
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~ 496 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 496 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSC
T ss_pred CEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECC
Confidence 7999999999999999999999999999999999999999999999998764 8999999999999999999999999
Q ss_pred CCCHhHHHHHhcccccCCCCc--EEEEEecCC
Q psy6409 1078 AKSIEDYTHRIGRTGRAGKEG--LAVSFCTKD 1107 (1832)
Q Consensus 1078 p~s~~~yvQr~GRaGR~g~~G--~ai~~~~~~ 1107 (1832)
|.++..|.|++||++|.|+.. .++.|++.+
T Consensus 497 ~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 497 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999999999999999764 566777776
No 148
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.1e-24 Score=287.94 Aligned_cols=327 Identities=18% Similarity=0.229 Sum_probs=223.4
Q ss_pred CCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 1499 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~ 1499 (1832)
..++|||.+++.+++ .+++.|++.+||+|||+.++..+...+.. ......+||||| ..|+.|+..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~---------~~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA---------RRQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH---------HSCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh---------cCCCCCEEEEEC-chHHHHHHHH
Confidence 379999999999876 78899999999999999876666544322 123445899999 7889999999
Q ss_pred HHHhcCCCCCeEEEEECCcchHHHHHH------------hhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1500 TNKFGTPLGIRTVLVVGGLSREEQGFR------------LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1500 ~~~~~~~~g~~v~~l~gg~~~~~~~~~------------l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
+.+++. +++++.++|+......... ....++|+|+|++.+..... .+....+++|||||||++-
T Consensus 305 ~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 305 FEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGC
T ss_pred HHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhc
Confidence 999864 4667777776654433221 12357899999998865432 1233468999999999985
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhhhHHHHHhhhccccCcceEEEEEccCCh-HHHH---HHHHhcC----------
Q psy6409 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP-AVER---LARSYLR---------- 1633 (1832)
Q Consensus 1568 ~~gf~~~l~~Il~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~q~v~~SATl~~-~~~~---~~~~~l~---------- 1633 (1832)
..+ ..+...+..+ .....+++|||+-. .+.+ ++.....
T Consensus 381 n~~--s~~~~~l~~l--------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~ 432 (800)
T 3mwy_W 381 NAE--SSLYESLNSF--------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID 432 (800)
T ss_dssp CSS--SHHHHHHTTS--------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-------
T ss_pred Cch--hHHHHHHHHh--------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhc
Confidence 322 2233333222 12345778888621 1111 1111000
Q ss_pred -------------------CCcEEEEcccC---CCCcceEEEEEE-----------------------------------
Q psy6409 1634 -------------------RPATVYIGSVG---KPTERIEQIVYI----------------------------------- 1656 (1832)
Q Consensus 1634 -------------------~p~~v~i~~~~---~~~~~i~q~~~~----------------------------------- 1656 (1832)
.|..+...... ..+......+.+
T Consensus 433 ~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~ 512 (800)
T 3mwy_W 433 FENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 512 (800)
T ss_dssp --CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 01111000000 000000000000
Q ss_pred ---------------------------------------cchhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHH
Q psy6409 1657 ---------------------------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGL 1695 (1832)
Q Consensus 1657 ---------------------------------------~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L 1695 (1832)
.....|...|..++... .+.++||||+....++.|...|
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L 592 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYL 592 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHH
Confidence 00123555566666543 5679999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc---EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCc
Q psy6409 1696 EKLGYNACTLHGGKGQEQRELALNSLKGGSKD---ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1772 (1832)
Q Consensus 1696 ~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~---VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~ 1772 (1832)
...|+.+..+||+++..+|..+++.|++|... +|++|.+++.|||++.+++||+||+|+|+..++|++||++|.|+.
T Consensus 593 ~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 593 SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred HhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999986654 999999999999999999999999999999999999999999876
Q ss_pred c--EEEEEeeCC--ChhHHHHHHH
Q psy6409 1773 G--LAVSFCTKD--DSHLFYDLKQ 1792 (1832)
Q Consensus 1773 G--~ai~~~~~~--d~~~~~~l~~ 1792 (1832)
. .++.|++.. +..++.....
T Consensus 673 k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 673 NHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp SCEEEEEEEETTSHHHHHHHHHHH
T ss_pred ceEEEEEEecCCCHHHHHHHHHHH
Confidence 4 455567776 3444544443
No 149
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.7e-24 Score=286.18 Aligned_cols=317 Identities=19% Similarity=0.222 Sum_probs=219.3
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE 824 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il----~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~ 824 (1832)
.+++|+|.+++..++ .+++.|++.+||+|||++++..+...+.. ......+||||| ..|+.|+..+
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~---------~~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA---------RRQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH---------HSCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh---------cCCCCCEEEEEC-chHHHHHHHH
Confidence 379999999998766 68899999999999999977666543321 123456899999 7889999999
Q ss_pred HHHhcCCCCCeEEEEEcCCchHHHHHHH------------hcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 825 TNKFGTPLGIRTVLVVGGLSREEQGFRL------------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 825 ~~~~~~~~~i~v~~~~Gg~~~~~~~~~l------------~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
|.+++. ++++..++|+.......... ....+|+|+|++.+..... .+....+++|||||||++-
T Consensus 305 ~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 305 FEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGC
T ss_pred HHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhc
Confidence 999864 46677777765543332211 1247899999999865432 2233468999999999985
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCC----hHHHHHHHHhcC----------
Q psy6409 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP----PAVERLARSYLR---------- 958 (1832)
Q Consensus 893 d~gf~~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~----~~v~~~~~~~l~---------- 958 (1832)
+. .......+..+ .....+++|||.- ..+..+......
T Consensus 381 n~--~s~~~~~l~~l--------------------------~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~ 432 (800)
T 3mwy_W 381 NA--ESSLYESLNSF--------------------------KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID 432 (800)
T ss_dssp CS--SSHHHHHHTTS--------------------------EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-------
T ss_pred Cc--hhHHHHHHHHh--------------------------hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhc
Confidence 42 22223333222 1234577788851 111111111110
Q ss_pred -------------------CCcEEEEccc--C-CCCcceEEEEEE-----------------------------------
Q psy6409 959 -------------------RPATVYIGSV--G-KPTERIEQIVYI----------------------------------- 981 (1832)
Q Consensus 959 -------------------~p~~v~~~~~--~-~~~~~i~q~~~~----------------------------------- 981 (1832)
.|..+..... . ..+......+..
T Consensus 433 ~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~ 512 (800)
T 3mwy_W 433 FENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 512 (800)
T ss_dssp --CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHH
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 0111100000 0 000000000000
Q ss_pred ---------------------------------------cchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHH
Q psy6409 982 ---------------------------------------LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGL 1020 (1832)
Q Consensus 982 ---------------------------------------~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L 1020 (1832)
+....|...|.+++... .+.++||||+....++.|...|
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L 592 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYL 592 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHH
Confidence 01133555666666543 5679999999999999999999
Q ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC---cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCC
Q psy6409 1021 EKLGYNACTLHGGKGQEQRELALNSLKGGSK---DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1097 (1832)
Q Consensus 1021 ~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~---~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~ 1097 (1832)
...|+.+..+||+++..+|..+++.|++|.. .+|++|.+++.|||++.+++||+||+|.++..++|++||++|.|+.
T Consensus 593 ~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 593 SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred HhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 9999999999999999999999999998655 4999999999999999999999999999999999999999999876
Q ss_pred --cEEEEEecCC
Q psy6409 1098 --GLAVSFCTKD 1107 (1832)
Q Consensus 1098 --G~ai~~~~~~ 1107 (1832)
..++.|++.+
T Consensus 673 k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 673 NHVMVYRLVSKD 684 (800)
T ss_dssp SCEEEEEEEETT
T ss_pred ceEEEEEEecCC
Confidence 4567778776
No 150
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=4.5e-24 Score=280.76 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=135.5
Q ss_pred cceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHc--CCCCCEEEEEcccch
Q psy6409 935 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKPVIIFVNQKKG 1012 (1832)
Q Consensus 935 ~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~ 1012 (1832)
..|+++||||+++...... .......+........ .+.......+...++..+.. ..+.++||||+++..
T Consensus 386 ~~q~i~~SAT~~~~~~~~~----~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEHT----DEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHHC----SSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHhh----hCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 4789999999986543221 1111111111111111 11222223444455444433 246789999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCC-----CCCHhHHHHH
Q psy6409 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1087 (1832)
Q Consensus 1013 ~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~-----p~s~~~yvQr 1087 (1832)
|+.+++.|...|+.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCCcEEEEEecCCCchHHHHHHHH
Q psy6409 1088 IGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118 (1832)
Q Consensus 1088 ~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~ 1118 (1832)
+|||||. ..|.|++|+++.+..+...+.+.
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 9999998 57999999999988777776654
No 151
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=238.80 Aligned_cols=166 Identities=39% Similarity=0.636 Sum_probs=133.9
Q ss_pred HHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcC
Q psy6409 953 ARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032 (1832)
Q Consensus 953 ~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg 1032 (1832)
...|+.+|..+.++........+.|.+..+....|...|.+++... ++++||||+++..++.++..|...|+.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3568889999998888778889999999999999999999999864 458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchH
Q psy6409 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1111 (1832)
Q Consensus 1033 ~~~~~~R~~il~~F~~G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~ 1111 (1832)
+|++.+|..+++.|++|.++|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|..|.|++|+++. +..+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 6666
Q ss_pred HHHHHHHH
Q psy6409 1112 FYDLKQMM 1119 (1832)
Q Consensus 1112 ~~~l~~~l 1119 (1832)
+..+.+.+
T Consensus 167 ~~~l~~~l 174 (191)
T 2p6n_A 167 LMDLKALL 174 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.91 E-value=3.3e-23 Score=272.61 Aligned_cols=172 Identities=21% Similarity=0.266 Sum_probs=132.8
Q ss_pred cceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEcchhhHHHHHHHHHHhC--CCCcEEEEECchhH
Q psy6409 1610 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKG 1687 (1832)
Q Consensus 1610 ~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~ 1687 (1832)
..|+++||||+++..... ........+.+.+.... .+.......+...++..+... .+.++||||+|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 578999999998654222 11111111111111111 122223334445555544432 46799999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCCCCEEEEeCC-----CCCHHHHHHH
Q psy6409 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM-----AKSIEDYTHR 1762 (1832)
Q Consensus 1688 a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~v~~VI~~d~-----P~s~~~yiQR 1762 (1832)
|+.|+..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|+|++||++|. |.+..+|+||
T Consensus 458 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr 537 (661)
T 2d7d_A 458 SEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 537 (661)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred hcccccCCCccEEEEEeeCCChhHHHHH
Q psy6409 1763 IGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790 (1832)
Q Consensus 1763 iGRaGR~g~~G~ai~~~~~~d~~~~~~l 1790 (1832)
+|||||. ..|.|++|+++.+..+...+
T Consensus 538 ~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 538 IGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred hCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 9999998 68999999999876555443
No 153
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=1.1e-23 Score=229.03 Aligned_cols=152 Identities=41% Similarity=0.602 Sum_probs=144.1
Q ss_pred CCcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC
Q psy6409 971 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~ 1050 (1832)
...++.|.+..+....|...|.+++......++||||+++..++.+++.|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34568999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1051 ~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
++|||||+++++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++.+..++..+.+.+...
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998876544
No 154
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=1.3e-23 Score=228.41 Aligned_cols=151 Identities=41% Similarity=0.608 Sum_probs=143.1
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC
Q psy6409 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g 1724 (1832)
....++.|.+..+....|...|..++......++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 34556889999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~ 155 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988763
No 155
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=9e-24 Score=234.34 Aligned_cols=164 Identities=41% Similarity=0.654 Sum_probs=139.9
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHhC-CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhC
Q psy6409 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723 (1832)
Q Consensus 1645 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~-~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~ 1723 (1832)
....++.|.+..+....|...|.+++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567899999999999999999999876 57899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCC
Q psy6409 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCP 1803 (1832)
Q Consensus 1724 g~~~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~ 1803 (1832)
|+++|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.... +.+|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-QEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT-CCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888774 7899
Q ss_pred hhhcCC
Q psy6409 1804 PELLNH 1809 (1832)
Q Consensus 1804 ~~L~~h 1809 (1832)
++|.+.
T Consensus 174 ~~l~~~ 179 (185)
T 2jgn_A 174 SWLENM 179 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 156
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.90 E-value=1.1e-23 Score=229.34 Aligned_cols=160 Identities=29% Similarity=0.550 Sum_probs=141.4
Q ss_pred ceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1649 RIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1649 ~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+.|.+..+.... |...|.+++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5678887777766 999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhhcCCCCCCChhhc
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1807 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~~~~~~~~~L~ 1807 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+...+... ...+|..+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ-IEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC-CEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC-ccccCccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998877544 466666654
Q ss_pred CC
Q psy6409 1808 NH 1809 (1832)
Q Consensus 1808 ~h 1809 (1832)
+.
T Consensus 162 ~~ 163 (165)
T 1fuk_A 162 TL 163 (165)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 157
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=1.4e-23 Score=230.08 Aligned_cols=160 Identities=32% Similarity=0.533 Sum_probs=142.2
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy6409 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726 (1832)
Q Consensus 1647 ~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~ 1726 (1832)
...+.|.+..+....|...|.+++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|++|++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35678899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCC-ChhHHHHHHHHhhcCCCCCCChh
Q psy6409 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPE 1805 (1832)
Q Consensus 1727 ~VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~~~~~~~~~~ 1805 (1832)
+|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++. +...+..+.+.+. .+...+|..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 161 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE-VNISELPDE 161 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC-CCEEECC--
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh-cchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999986 4566777776653 334666665
Q ss_pred hc
Q psy6409 1806 LL 1807 (1832)
Q Consensus 1806 L~ 1807 (1832)
+.
T Consensus 162 ~~ 163 (172)
T 1t5i_A 162 ID 163 (172)
T ss_dssp --
T ss_pred hc
Confidence 43
No 158
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=228.48 Aligned_cols=152 Identities=30% Similarity=0.494 Sum_probs=137.8
Q ss_pred CCcceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCC
Q psy6409 971 PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049 (1832)
Q Consensus 971 ~~~~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G 1049 (1832)
....+.|.+..+.... |...|..++.....+++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888887655 999999999888788999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccccccCCCcCcCEEEEcCCC------CCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1050 SKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1050 ~~~VLVaTdv~~rGlDip~v~~VI~~d~p------~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
.++|||||+++++|||+|++++||+||+| .+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 99999999999999999999999999999988888888876544
No 159
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.5e-23 Score=227.75 Aligned_cols=150 Identities=29% Similarity=0.491 Sum_probs=137.0
Q ss_pred CCcceEEEEEEcchhh-HHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCC
Q psy6409 1646 PTERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724 (1832)
Q Consensus 1646 ~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g 1724 (1832)
....+.|.+..+.... |...|..++.....+++||||+++.+|+.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3457888888887655 999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcccccccCCCCCCCEEEEeCCC------CCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1725 SKDILVATDVAGRGIDIKDVSMVINYDMA------KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1725 ~~~VLVATdvl~~GIDip~v~~VI~~d~P------~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
+++|||||+++++|+|+|++++||+||+| .+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999 999999999999999999999999999999988888888764
No 160
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=2.7e-23 Score=227.82 Aligned_cols=150 Identities=32% Similarity=0.541 Sum_probs=139.2
Q ss_pred CcceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCC
Q psy6409 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051 (1832)
Q Consensus 972 ~~~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~ 1051 (1832)
...+.|.+..+....|...|.+++......++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35688899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCC-CchHHHHHHHHHhc
Q psy6409 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1052 ~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~-d~~~~~~l~~~l~~ 1121 (1832)
+|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|..|.+++|+++. +...+..+.+.+..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999976 55677777776543
No 161
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=4.3e-23 Score=224.80 Aligned_cols=149 Identities=30% Similarity=0.563 Sum_probs=134.1
Q ss_pred ceEEEEEEcchhh-HHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 974 RIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 974 ~i~q~~~~~~~~~-k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+.|.+..+.... |...|.+++.....+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5778888887766 999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|..|.|++|+++++...+..+.+.+..+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999999999988888887765443
No 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=5.2e-23 Score=233.47 Aligned_cols=148 Identities=32% Similarity=0.492 Sum_probs=137.9
Q ss_pred eEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Q psy6409 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054 (1832)
Q Consensus 975 i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VL 1054 (1832)
+.+....+....|...|.+++....++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 45666777888999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1055 VaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
|||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..|.|++|+++.+...+..+.+.+...
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999998876543
No 163
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=227.41 Aligned_cols=152 Identities=43% Similarity=0.688 Sum_probs=128.8
Q ss_pred CCCcceEEEEEEcchhhHHHHHHHHHHcC-CCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC
Q psy6409 970 KPTERIEQIVYILSEQDKRKKLMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048 (1832)
Q Consensus 970 ~~~~~i~q~~~~~~~~~k~~~L~~~l~~~-~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~ 1048 (1832)
....++.|.+..+....|...|.+++... ...++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567999999999999999999999876 57799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhc
Q psy6409 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121 (1832)
Q Consensus 1049 G~~~VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~ 1121 (1832)
|.++|||||+++++|+|+|++++||+||+|.++.+|+||+|||||.|..|.|++|+++.+...+..+.+.+..
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998888888877644
No 164
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.88 E-value=1.9e-22 Score=228.91 Aligned_cols=146 Identities=32% Similarity=0.500 Sum_probs=135.7
Q ss_pred eEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEE
Q psy6409 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729 (1832)
Q Consensus 1650 i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VL 1729 (1832)
+.+....+....|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++||
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34556667788999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1730 VATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
|||+++++|||+|++++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999988888887764
No 165
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=2.2e-22 Score=238.95 Aligned_cols=149 Identities=32% Similarity=0.491 Sum_probs=136.7
Q ss_pred ceEEEEEEcchhhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcE
Q psy6409 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053 (1832)
Q Consensus 974 ~i~q~~~~~~~~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~V 1053 (1832)
.+.+.+..+....|...|.+++....+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|.++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 36778888889999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHhcC
Q psy6409 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122 (1832)
Q Consensus 1054 LVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~~~ 1122 (1832)
||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..|.|++|+++.+..++..+.+.+...
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999999999998877544
No 166
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=7.2e-22 Score=234.45 Aligned_cols=147 Identities=32% Similarity=0.498 Sum_probs=134.7
Q ss_pred ceEEEEEEcchhhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcE
Q psy6409 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728 (1832)
Q Consensus 1649 ~i~q~~~~~~~~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~V 1728 (1832)
.+.+.+..+....|...|..++......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 35677888888999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHhh
Q psy6409 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795 (1832)
Q Consensus 1729 LVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1795 (1832)
||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|+.|.|++|+++.+...+..+.+.+.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999988888887764
No 167
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=230.63 Aligned_cols=165 Identities=20% Similarity=0.194 Sum_probs=129.8
Q ss_pred CCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhc-
Q psy6409 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF- 87 (1832)
Q Consensus 9 ~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~- 87 (1832)
..+++|.++||.+..|++++++||||||||.+|.+|++..+...+. ..++.+|+++|||+||.|+.+.+...
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999876654321 23568999999999999998877654
Q ss_pred CCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchh-hcCCCh-HHHHHHHhh
Q psy6409 88 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMGFE-PDVQKILEY 165 (1832)
Q Consensus 88 ~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~-l~~gf~-~~~~~i~~~ 165 (1832)
+...+......... +......+++|+|+|||||.+++.. .++++++|||||||+| +++||. ..++.|+..
T Consensus 134 ~~~~~~~~g~~~~~-----~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 134 GEEPGKSCGYSVRF-----ESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TCCTTSSEEEEETT-----EEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEeech-----hhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 33333333221111 1111135689999999999999987 4899999999999998 999998 577888776
Q ss_pred CCcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCccccccccc
Q psy6409 166 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMP 214 (1832)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1832)
.|. +|+++||||++++.+.+||.
T Consensus 206 ~~~--------------------------~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 206 YPE--------------------------VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp CTT--------------------------SEEEEEECSSCCHHHHHHTT
T ss_pred CCC--------------------------CeEEEEecCCCHHHHHHHcC
Confidence 653 49999999999998877774
No 168
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=4.1e-22 Score=226.60 Aligned_cols=150 Identities=21% Similarity=0.201 Sum_probs=117.6
Q ss_pred ccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHH-HHHH
Q psy6409 5 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ-IEEE 83 (1832)
Q Consensus 5 ~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~q-i~~~ 83 (1832)
.+.-+|+|.|.++|+.++.|++++++||||||||++|++|++..+..... ...++.+|||+||++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHHHHHHH
Confidence 34558999999999999999999999999999999999999976644211 1346789999999999999 7788
Q ss_pred HHhcCCCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhcc------ccCCcceEEEEcccchhhcCCChH
Q psy6409 84 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY------LVLNQCTYIVLDEADRMIDMGFEP 157 (1832)
Q Consensus 84 ~~~~~~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~------~~l~~~~~~vlDEad~~l~~gf~~ 157 (1832)
+++++.. ++.+.+++|+.....+...+..+++|+|+||++|..++..+. +.+.++++||+||||+|++.||-.
T Consensus 103 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 103 FQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHH
T ss_pred HHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHH
Confidence 8888765 778889999988877777777789999999999999998753 678899999999999999988777
Q ss_pred HHHH
Q psy6409 158 DVQK 161 (1832)
Q Consensus 158 ~~~~ 161 (1832)
.+..
T Consensus 182 ~~~~ 185 (216)
T 3b6e_A 182 NIMR 185 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 169
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.76 E-value=4.7e-23 Score=225.63 Aligned_cols=147 Identities=39% Similarity=0.590 Sum_probs=135.6
Q ss_pred ceEEEEEEcch-hhHHHHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCc
Q psy6409 974 RIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052 (1832)
Q Consensus 974 ~i~q~~~~~~~-~~k~~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~ 1052 (1832)
.+.|.+..+.. ..|...|.+++......++||||+++..|+.++..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45666777776 78889999998877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcEEEEEecCCCchHHHHHHHHHh
Q psy6409 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120 (1832)
Q Consensus 1053 VLVaTdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l~ 1120 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999999999999998888777776543
No 170
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.75 E-value=5.7e-23 Score=224.92 Aligned_cols=146 Identities=39% Similarity=0.600 Sum_probs=135.6
Q ss_pred ceEEEEEEcch-hhHHHHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy6409 1649 RIEQIVYILSE-QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727 (1832)
Q Consensus 1649 ~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~ 1727 (1832)
.+.|.+..+.. ..|...|.+++......++||||+++.+|+.++..|...++.+..+||+|++.+|..+++.|++|+++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 35566666766 78888899998877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEEEEEeeCCChhHHHHHHHHh
Q psy6409 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794 (1832)
Q Consensus 1728 VLVATdvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~ai~~~~~~d~~~~~~l~~~l 1794 (1832)
|||||+++++|+|+|++++||+||+|.+..+|+||+|||||.|+.|.+++|+++.+...+..+.+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149 (170)
Confidence 9999999999999999999999999999999999999999999999999999999988888887654
No 171
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=210.88 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=112.8
Q ss_pred HcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH-HHH
Q psy6409 745 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ-IEE 823 (1832)
Q Consensus 745 ~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q-i~~ 823 (1832)
..+...|+|+|.++++.++.++++++++|||+|||++|+++++..+.... ....++++||++|+++|+.| +.+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK------KASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHH------HTTCCCCEEEEESSHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcc------cccCCCcEEEEECHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999987764321 11346789999999999999 778
Q ss_pred HHHHhcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccc------cccCCceeEEEecchhhhcCCCh
Q psy6409 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY------LVLNQCTYIVLDEADRMIDMGFE 897 (1832)
Q Consensus 824 ~~~~~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~------~~l~~~~~lViDEaH~l~d~gf~ 897 (1832)
.+..+... ++.+..++|+.........+..+++|+|+||++|.+.+.... ..+..+++|||||||++.+.++.
T Consensus 102 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 102 EFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp THHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 88887654 788888998877655544555579999999999998887653 56789999999999999877665
Q ss_pred HHH
Q psy6409 898 PDV 900 (1832)
Q Consensus 898 ~~i 900 (1832)
..+
T Consensus 181 ~~~ 183 (216)
T 3b6e_A 181 NNI 183 (216)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 172
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=211.34 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=135.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
.+.+.+...+...++++|.++++.+..|++++++||||||||+++.++++..+.... ...+..++|++|+++|
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~~~l 121 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPRRIS 121 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESSHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccchHH
Confidence 344444555566789999999999999999999999999999999999887653311 1235689999999999
Q ss_pred HHHHHHHHHHh-cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh-hcCC
Q psy6409 818 AQQIEEETNKF-GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM-IDMG 895 (1832)
Q Consensus 818 a~Qi~~~~~~~-~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l-~d~g 895 (1832)
|.|+.+.+... +...+..++........ ....+++|+|+|||+|++++.. .++++++|||||||++ ++.+
T Consensus 122 a~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~ 193 (235)
T 3llm_A 122 AVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTD 193 (235)
T ss_dssp HHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHH
T ss_pred HHHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchH
Confidence 99999888754 33455555543332211 1113588999999999999876 4899999999999986 7766
Q ss_pred Ch-HHHHHHHHhCCCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHHHHHhcCCCc
Q psy6409 896 FE-PDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961 (1832)
Q Consensus 896 f~-~~i~~Il~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~~~~~l~~p~ 961 (1832)
|. ..+..++... ...|+++||||++... ++..|...|.
T Consensus 194 ~~~~~l~~i~~~~--------------------------~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 194 FLLVVLRDVVQAY--------------------------PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHC--------------------------TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHHhhC--------------------------CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 65 3555555443 2478999999999765 7777766665
No 173
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.81 E-value=7.3e-20 Score=236.44 Aligned_cols=321 Identities=14% Similarity=0.169 Sum_probs=174.0
Q ss_pred cCCCCCcHHHHHHHHH----HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 746 IGYAEPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~----il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
.|| +|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 477 899999998654 4578999999999999999999999742 57899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEEcCCch--------H------------------------HHH---------------HHHhc
Q psy6409 822 EEETNKFGTPLGIRTVLVVGGLSR--------E------------------------EQG---------------FRLRL 854 (1832)
Q Consensus 822 ~~~~~~~~~~~~i~v~~~~Gg~~~--------~------------------------~~~---------------~~l~~ 854 (1832)
.+.+..+ ++++..+.|.... . +.+ .....
T Consensus 68 ~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 68 YKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHHGGG----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 9888874 4555544432110 0 000 01123
Q ss_pred CCceeecCHHHHHHHHHccccc-------cCCceeEEEecchhhhcCC-------ChHHHHHHHHhCC------------
Q psy6409 855 GCEIVIATPGRLIDVLENRYLV-------LNQCTYIVLDEADRMIDMG-------FEPDVQKILEYMP------------ 908 (1832)
Q Consensus 855 ~~~IlV~TP~rL~d~l~~~~~~-------l~~~~~lViDEaH~l~d~g-------f~~~i~~Il~~l~------------ 908 (1832)
.++|||+|+..|++.+.++.+. +....+|||||||.|.+.. -...+..++..+.
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 5799999999999866554332 4567899999999984310 0011111111100
Q ss_pred -------------C---C------CCCCCCch--hHHHHHHH--------------------Hhhc-------------c
Q psy6409 909 -------------V---T------NLKPDTED--AEDENKLL--------------------ANYN-------------S 931 (1832)
Q Consensus 909 -------------~---~------~~~~~~~~--~~~~~~ll--------------------~~~~-------------~ 931 (1832)
. . ...+.... ......++ ..+. .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 0 0 00000000 00111111 0000 0
Q ss_pred ------------ccccceEEEEEecCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEEc-------ch----hhHH
Q psy6409 932 ------------KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-------SE----QDKR 988 (1832)
Q Consensus 932 ------------~~~~~q~v~~SATl~~~v~~~~~~~l~~p~~v~~~~~~~~~~~i~q~~~~~-------~~----~~k~ 988 (1832)
......+|++||||++... +...|. ..+... .. ..+.+... .. ..-.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f~-----~~~~~~---~g-~~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSYK-----IVVNES---YG-RGEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEEE-----EECCCC----C-CCEEEECTTCCCCGGGHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhcC-----Cchhhe---ec-CCcceeccccCCCcccccCHHHHHH
Confidence 0001225999999987210 001110 111000 00 00111100 01 1122
Q ss_pred HHHHHHHHcCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEE--ecccccccCCC
Q psy6409 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV--ATDVAGRGIDI 1066 (1832)
Q Consensus 989 ~~L~~~l~~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLV--aTdv~~rGlDi 1066 (1832)
..+.+++. ..++.+|||++|....+.+++.|.. .. ...+|.. ..|..+++.|++|. .||+ ||+.+++|||+
T Consensus 374 ~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 23333443 3566899999999999999988864 33 3556554 46889999999875 5777 88999999999
Q ss_pred cC----cCEEEEcCCCCC-H-----------------------------hHHHHHhcccccCCCC-cEEEEEe
Q psy6409 1067 KD----VSMVINYDMAKS-I-----------------------------EDYTHRIGRTGRAGKE-GLAVSFC 1104 (1832)
Q Consensus 1067 p~----v~~VI~~d~p~s-~-----------------------------~~yvQr~GRaGR~g~~-G~ai~~~ 1104 (1832)
|+ +++||++++|.. + ..+.|.+||+-|...+ |. +.++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~ll 518 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLC 518 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEE
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEE
Confidence 98 889999999841 1 2356899999997544 54 3344
No 174
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.79 E-value=4.3e-19 Score=229.21 Aligned_cols=323 Identities=15% Similarity=0.186 Sum_probs=173.0
Q ss_pred cCCCCCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~----il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi 1496 (1832)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +++++|++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 467 899999998654 4578999999999999999999998742 56899999999999999
Q ss_pred HHHHHHhcCCCCCeEEEEECCcc--------hH------------------------HH---------------HHHhhc
Q psy6409 1497 EEETNKFGTPLGIRTVLVVGGLS--------RE------------------------EQ---------------GFRLRL 1529 (1832)
Q Consensus 1497 ~~~~~~~~~~~g~~v~~l~gg~~--------~~------------------------~~---------------~~~l~~ 1529 (1832)
.+.+..+ +++++.+.|... .. .. ......
T Consensus 68 ~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~ 143 (540)
T 2vl7_A 68 YKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK 143 (540)
T ss_dssp HHHHGGG----TCCEEEC---------------------------------------------------------CTTGG
T ss_pred HHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh
Confidence 9888775 444544443210 00 00 001124
Q ss_pred CCcEEEeCHHHHHHHHHcccc-------ccCCceeEEEccchhhhcCC-------ChHHHHHHH----------------
Q psy6409 1530 GCEIVIATPGRLIDVLENRYL-------VLNQCTYIVLDEADRMIDMG-------FEPDVQKIL---------------- 1579 (1832)
Q Consensus 1530 ~~~IiVaTP~rl~~~l~~~~~-------~l~~v~llViDEaH~ll~~g-------f~~~l~~Il---------------- 1579 (1832)
+++|||+|+..|.+-.....+ .+....+|||||||+|.+.. -...+..++
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 223 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKK 223 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHH
Confidence 579999999999875543332 24577899999999984310 001111111
Q ss_pred ---------HhC----CCC-----CCCCCCch--hhhHHHHH--------------------hhhc-------------c
Q psy6409 1580 ---------EYM----PVT-----NLKPDTED--AEDENKLL--------------------ANYN-------------S 1606 (1832)
Q Consensus 1580 ---------~~l----~~~-----~~~~~~~~--~~~~~~l~--------------------~~~~-------------~ 1606 (1832)
..+ +.. ...+.... ......+. ..+. .
T Consensus 224 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 303 (540)
T 2vl7_A 224 VKDYINLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVK 303 (540)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 111 000 00000000 00000000 0000 0
Q ss_pred ------------ccCcceEEEEEccCChHHHHHHHHhcCCCcEEEEcccCCCCcceEEEEEE------cch-----hhHH
Q psy6409 1607 ------------KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI------LSE-----QDKR 1663 (1832)
Q Consensus 1607 ------------~~~~~q~v~~SATl~~~~~~~~~~~l~~p~~v~i~~~~~~~~~i~q~~~~------~~~-----~~k~ 1663 (1832)
......+|++|||+++... +...|. ..+ ..+... .+.+.. ... ..-.
T Consensus 304 ~P~~~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f~-----~~~---~~~~g~-~~~~~~~~l~s~f~~r~~~~~~~~ 373 (540)
T 2vl7_A 304 VPSDVNQLIEDALNVKTFKVLMSGTLPESLT-LTNSYK-----IVV---NESYGR-GEYYYCPNVTSELRKRNSNIPIYS 373 (540)
T ss_dssp ECSCHHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEEE-----EEC---CCC-CC-CEEEECTTCCCCGGGHHHHHHHHH
T ss_pred ehHHHHHHHHHhcCccCCeEEEcccCCCCcc-cchhcC-----Cch---hheecC-CcceeccccCCCcccccCHHHHHH
Confidence 0011224888999987210 000110 000 000000 011110 011 1112
Q ss_pred HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEE--EcccccccCCC
Q psy6409 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV--ATDVAGRGIDI 1741 (1832)
Q Consensus 1664 ~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLV--ATdvl~~GIDi 1741 (1832)
..+..++. ...+.+|||++|....+.++..|.. .. ...++.. ..|..+++.|+.|. .||+ ||..+++|||+
T Consensus 374 ~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~ 446 (540)
T 2vl7_A 374 ILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEF 446 (540)
T ss_dssp HHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC----------
T ss_pred HHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceec
Confidence 22333343 3567899999999999999988754 33 3455543 46889999999865 6777 88999999999
Q ss_pred CC----CCEEEEeCCCCC----H--------------------------HHHHHHhcccccCC-CccEEEEEeeC
Q psy6409 1742 KD----VSMVINYDMAKS----I--------------------------EDYTHRIGRTGRAG-KEGLAVSFCTK 1781 (1832)
Q Consensus 1742 p~----v~~VI~~d~P~s----~--------------------------~~yiQRiGRaGR~g-~~G~ai~~~~~ 1781 (1832)
|+ +.+||++++|.. + ..+.|.+||+-|.. ..|. ++++++
T Consensus 447 ~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 447 REKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp -----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred CCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 97 899999998841 1 23569999999964 4454 444443
No 175
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=1.2e-19 Score=215.70 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=128.3
Q ss_pred CCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcC
Q psy6409 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 88 (1832)
Q Consensus 9 ~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~ 88 (1832)
+|+|.|.+||+.++.+++.+++||||||||++|++++...+.. ..+.+|||+||++|+.|+.+++++++
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999998765422 23479999999999999999999999
Q ss_pred CCccceEEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCCc
Q psy6409 89 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 168 (1832)
Q Consensus 89 ~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~~ 168 (1832)
....+..+.++||..... ....+++|+|+||++|... ....+.++++|||||||+|.+ +.+..|+..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp SCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred ccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 888888999999987653 3346789999999988554 334568899999999999984 588888888742
Q ss_pred CCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcc
Q psy6409 169 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 207 (1832)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1832)
. .|+++||||.+..
T Consensus 252 ~-------------------------~~~l~lSATp~~~ 265 (282)
T 1rif_A 252 C-------------------------MFKFGLSGSLRDG 265 (282)
T ss_dssp C-------------------------CEEEEECSSCCTT
T ss_pred C-------------------------CeEEEEeCCCCCc
Confidence 1 5999999998654
No 176
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=2.5e-19 Score=212.75 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=125.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.+|+|+|.++++.++.+++.|+++|||||||++|++++...+.. .+.++|||+||++|+.|+.+.+.++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 38999999999999998889999999999999999888765421 2348999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
+...+..+..++||..... ....+++|+|+||+.+... ....+..+++|||||||++.+ +.+..++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~ 250 (282)
T 1rif_A 181 RLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (282)
T ss_dssp TSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT
T ss_pred cccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhh
Confidence 8777778888888876433 2224689999999987433 233578899999999999874 46666665552
Q ss_pred CCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCChHHHHH
Q psy6409 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952 (1832)
Q Consensus 909 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~~v~~~ 952 (1832)
...+++++|||+++....+
T Consensus 251 -------------------------~~~~~l~lSATp~~~~~~~ 269 (282)
T 1rif_A 251 -------------------------NCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp -------------------------TCCEEEEECSSCCTTSTTH
T ss_pred -------------------------cCCeEEEEeCCCCCcchHH
Confidence 2478999999998764433
No 177
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.76 E-value=1.1e-16 Score=207.70 Aligned_cols=307 Identities=15% Similarity=0.108 Sum_probs=187.7
Q ss_pred CCCCCcHHHHHHHHHH----HcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIG----LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~i----l~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~ 822 (1832)
|| +|+|+|.+++..+ ..|+++++.||||+|||++|++|++. .+++++|++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHH
Confidence 45 7999999977654 46899999999999999999999985 2678999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEEcCCch---------------------------------HHHH------------------HH
Q psy6409 823 EETNKFGTPLGIRTVLVVGGLSR---------------------------------EEQG------------------FR 851 (1832)
Q Consensus 823 ~~~~~~~~~~~i~v~~~~Gg~~~---------------------------------~~~~------------------~~ 851 (1832)
+.+..+...+++++..+.|.... .... ..
T Consensus 65 ~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 65 RDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLN 144 (551)
T ss_dssp HHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHh
Confidence 99999988888999888774321 1111 12
Q ss_pred HhcCCceeecCHHHHHHHHHcccccc-CCceeEEEecchhhhcCCCh--------HHHHHHHHhC---------------
Q psy6409 852 LRLGCEIVIATPGRLIDVLENRYLVL-NQCTYIVLDEADRMIDMGFE--------PDVQKILEYM--------------- 907 (1832)
Q Consensus 852 l~~~~~IlV~TP~rL~d~l~~~~~~l-~~~~~lViDEaH~l~d~gf~--------~~i~~Il~~l--------------- 907 (1832)
....++|||+|++.|++...+..+.+ ....+|||||||.|.+ ... ..+..++..+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~ 223 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQ 223 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999998765554333 4678999999999988 411 1222222111
Q ss_pred -CC----C-C-----CCCCCch---------------------------hHHHHHHHHhh--------------------
Q psy6409 908 -PV----T-N-----LKPDTED---------------------------AEDENKLLANY-------------------- 929 (1832)
Q Consensus 908 -~~----~-~-----~~~~~~~---------------------------~~~~~~ll~~~-------------------- 929 (1832)
.. . . ..+.... .......+..+
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~ 303 (551)
T 3crv_A 224 LREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPE 303 (551)
T ss_dssp HTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCC
T ss_pred HHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECC
Confidence 10 0 0 0000000 00000000000
Q ss_pred -----cccccc-ceEEEEEecCChHHHHHHHHhcCC-CcEEEE--cccCCCCcceEEEEEEc----c---h---hhHHHH
Q psy6409 930 -----NSKKKY-RQTVMFTATMPPAVERLARSYLRR-PATVYI--GSVGKPTERIEQIVYIL----S---E---QDKRKK 990 (1832)
Q Consensus 930 -----~~~~~~-~q~v~~SATl~~~v~~~~~~~l~~-p~~v~~--~~~~~~~~~i~q~~~~~----~---~---~~k~~~ 990 (1832)
...... ..+|++||||.+ ...+...+.-. +....+ -....+- ..+...++ + . ..-...
T Consensus 304 ~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~ 380 (551)
T 3crv_A 304 ISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKR 380 (551)
T ss_dssp THHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHH
Confidence 000122 689999999987 44444443322 221100 0111111 12221111 1 0 111233
Q ss_pred HHHHHH---cCCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEec--ccccccCC
Q psy6409 991 LMEVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT--DVAGRGID 1065 (1832)
Q Consensus 991 L~~~l~---~~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaT--dv~~rGlD 1065 (1832)
+.+.+. ...++.++||++|....+.+++. .+..+..-..+++ +..+++.|+...-.||+|| ..+.+|||
T Consensus 381 l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD 454 (551)
T 3crv_A 381 YADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIE 454 (551)
T ss_dssp HHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSC
T ss_pred HHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccc
Confidence 333322 23456899999999988888862 3544544334555 3557777854344799998 69999999
Q ss_pred Cc-----CcCEEEEcCCCC
Q psy6409 1066 IK-----DVSMVINYDMAK 1079 (1832)
Q Consensus 1066 ip-----~v~~VI~~d~p~ 1079 (1832)
+| .+..||..++|.
T Consensus 455 ~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 455 LRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CEETTEESEEEEEEESCCC
T ss_pred ccccCCcceeEEEEEcCCC
Confidence 99 377888877753
No 178
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.74 E-value=3.5e-16 Score=202.84 Aligned_cols=336 Identities=16% Similarity=0.105 Sum_probs=201.8
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHH
Q psy6409 1422 GYAEPTPIQRQAIPIG----LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497 (1832)
Q Consensus 1422 g~~~ptpiQ~~ai~~i----l~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~ 1497 (1832)
|| .|+|+|.+++..+ ..|+++++.||||+|||++|++|++. .++++||++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHH
Confidence 45 7999999987754 47899999999999999999999985 2678999999999999999
Q ss_pred HHHHHhcCCCCCeEEEEECCcch---------------------------------HHHH------------------HH
Q psy6409 1498 EETNKFGTPLGIRTVLVVGGLSR---------------------------------EEQG------------------FR 1526 (1832)
Q Consensus 1498 ~~~~~~~~~~g~~v~~l~gg~~~---------------------------------~~~~------------------~~ 1526 (1832)
+++..+....+++++.+.|.... .... ..
T Consensus 65 ~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~ 144 (551)
T 3crv_A 65 RDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLN 144 (551)
T ss_dssp HHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHh
Confidence 99999987778888888773221 1111 12
Q ss_pred hhcCCcEEEeCHHHHHHHHHcccccc-CCceeEEEccchhhhcCCC--------hHHHHHHHHhC---------------
Q psy6409 1527 LRLGCEIVIATPGRLIDVLENRYLVL-NQCTYIVLDEADRMIDMGF--------EPDVQKILEYM--------------- 1582 (1832)
Q Consensus 1527 l~~~~~IiVaTP~rl~~~l~~~~~~l-~~v~llViDEaH~ll~~gf--------~~~l~~Il~~l--------------- 1582 (1832)
...+++|||+|++.|.+...+..+.+ ....+|||||||+|.+ .. ...+..++..+
T Consensus 145 ~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~ 223 (551)
T 3crv_A 145 SLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQ 223 (551)
T ss_dssp HGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468999999999987754433333 4678999999999987 41 11222222111
Q ss_pred -CCC-----C-----CCCCCch---------------------------hhhHHHHHhhh--------------------
Q psy6409 1583 -PVT-----N-----LKPDTED---------------------------AEDENKLLANY-------------------- 1604 (1832)
Q Consensus 1583 -~~~-----~-----~~~~~~~---------------------------~~~~~~l~~~~-------------------- 1604 (1832)
... . ..+.... .......+..+
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~ 303 (551)
T 3crv_A 224 LREVVLPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPE 303 (551)
T ss_dssp HTTSCCSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCC
T ss_pred HHHHhhccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECC
Confidence 110 0 0000000 00000000000
Q ss_pred -----ccccCc-ceEEEEEccCChHHHHHHHHhcCC-CcEEE--EcccCCCCcceEEEEEE--cch------hhHHHHHH
Q psy6409 1605 -----NSKKKY-RQTVMFTATMPPAVERLARSYLRR-PATVY--IGSVGKPTERIEQIVYI--LSE------QDKRKKLM 1667 (1832)
Q Consensus 1605 -----~~~~~~-~q~v~~SATl~~~~~~~~~~~l~~-p~~v~--i~~~~~~~~~i~q~~~~--~~~------~~k~~~l~ 1667 (1832)
...... ..+|++|||+++ ...+...+.-. +.... ......+-..-...+.. ++. ..-...+.
T Consensus 304 ~~~~l~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 304 ISYYLNLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp THHHHGGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 001123 689999999987 33333332222 22110 11111121111111211 110 11123333
Q ss_pred HHHH---hCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEc--ccccccCCCC
Q psy6409 1668 EVLN---RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT--DVAGRGIDIK 1742 (1832)
Q Consensus 1668 ~~l~---~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVAT--dvl~~GIDip 1742 (1832)
+.+. ...++.++||++|....+.++.. .+..+..-..+++ +..+++.|+...--||+|| ..+.+|||+|
T Consensus 383 ~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 383 DYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 3332 23456899999999999988863 3555544334555 4567888854444799998 6999999999
Q ss_pred -----CCCEEEEeCCCC---------------------CH---------HHHHHHhcccccCCCccEEEEEeeC
Q psy6409 1743 -----DVSMVINYDMAK---------------------SI---------EDYTHRIGRTGRAGKEGLAVSFCTK 1781 (1832)
Q Consensus 1743 -----~v~~VI~~d~P~---------------------s~---------~~yiQRiGRaGR~g~~G~ai~~~~~ 1781 (1832)
.+.+||...+|. .. ..+.|-+||+=|..+.--+++++++
T Consensus 457 d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 457 NNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 478899877663 11 1234899999996544334444443
No 179
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.66 E-value=1.2e-16 Score=184.22 Aligned_cols=139 Identities=21% Similarity=0.173 Sum_probs=112.9
Q ss_pred CCCChhhhhhcccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhc
Q psy6409 8 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 87 (1832)
Q Consensus 8 ~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~ 87 (1832)
-+|+|.|.+|++.++.+++++++||||+|||++++.++.. .+..+|||+||++|+.|+.+++.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---------------LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---------------SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---------------cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 3799999999999999999999999999999999998863 1457999999999999999999996
Q ss_pred CCCccce-EEEEeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhC
Q psy6409 88 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166 (1832)
Q Consensus 88 ~~~~~~~-~~~~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~ 166 (1832)
++. ..++.|+.. ..++|+|+||++|...+.. ...++++|||||||++.+.+|. .|++.+
T Consensus 157 ----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~ 216 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMS 216 (237)
T ss_dssp ----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTC
T ss_pred ----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhc
Confidence 456 566666654 2578999999999877653 2256899999999999887654 466666
Q ss_pred CcCCCCCCCcchhHHHHHHhhccccccccceEEEEeecCcc
Q psy6409 167 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 207 (1832)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1832)
+. .+.++||||....
T Consensus 217 ~~--------------------------~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 IA--------------------------PFRLGLTATFERE 231 (237)
T ss_dssp CC--------------------------SEEEEEEESCC--
T ss_pred cC--------------------------CEEEEEecCCCCC
Confidence 42 3789999997654
No 180
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.65 E-value=7.6e-16 Score=177.54 Aligned_cols=138 Identities=21% Similarity=0.170 Sum_probs=110.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..|+++|.++++.++.++++|+++|||+|||++++.++.. .+.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~---------------~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE---------------LSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH---------------SCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH---------------cCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999887753 1467999999999999999999884
Q ss_pred cCCCCCe-EEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhC
Q psy6409 829 GTPLGIR-TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907 (1832)
Q Consensus 829 ~~~~~i~-v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l 907 (1832)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+++|||||||++.+..| ..++..+
T Consensus 157 ----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~ 216 (237)
T 2fz4_A 157 ----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMS 216 (237)
T ss_dssp ----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTC
T ss_pred ----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhc
Confidence 677 777777654 2579999999998765542 235689999999999876543 3344433
Q ss_pred CCCCCCCCCchhHHHHHHHHhhccccccceEEEEEecCCh
Q psy6409 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947 (1832)
Q Consensus 908 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~q~v~~SATl~~ 947 (1832)
+ ..+++++|||++.
T Consensus 217 ~--------------------------~~~~l~LSATp~r 230 (237)
T 2fz4_A 217 I--------------------------APFRLGLTATFER 230 (237)
T ss_dssp C--------------------------CSEEEEEEESCC-
T ss_pred c--------------------------CCEEEEEecCCCC
Confidence 2 3578999999875
No 181
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.63 E-value=7.2e-15 Score=191.83 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 750 ~pt~iQ~~ai~~----il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
+|+|.|.+.+.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------cCCeEEEECCCHHHHHHHHHHH
Confidence 689999988764 4579999999999999999999999987632 2578999999999999999999
Q ss_pred HHhcCCCCCeEEEEEcCC
Q psy6409 826 NKFGTPLGIRTVLVVGGL 843 (1832)
Q Consensus 826 ~~~~~~~~i~v~~~~Gg~ 843 (1832)
..+....+++++.++|+.
T Consensus 72 ~~l~~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHHSCCCEEECCCHH
T ss_pred HHHhhccCeEEEEEECCC
Confidence 988665677777766643
No 182
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.61 E-value=3.5e-14 Score=185.38 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~----il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.|+|.|.+++.. +..|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-----------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-----------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-----------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-----------cCCeEEEECCCHHHHHHHHHHH
Confidence 689999998864 4578999999999999999999999987643 2578999999999999999999
Q ss_pred HHhcCCCCCeEEEEECC
Q psy6409 1501 NKFGTPLGIRTVLVVGG 1517 (1832)
Q Consensus 1501 ~~~~~~~g~~v~~l~gg 1517 (1832)
..+....+++++.+.|+
T Consensus 72 ~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHSCCCEEECCCH
T ss_pred HHHhhccCeEEEEEECC
Confidence 98866557777776663
No 183
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=4.5e-15 Score=174.08 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=101.0
Q ss_pred cchhhHHHHHHHHHHcC--CCCCEEEEEcccchHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHHhCC-CCc-EEEe
Q psy6409 982 LSEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGG-SKD-ILVA 1056 (1832)
Q Consensus 982 ~~~~~k~~~L~~~l~~~--~~~~vIVFv~s~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~il~~F~~G-~~~-VLVa 1056 (1832)
.....|...|.+++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .++ +|||
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888764 6789999999999999999999885 99999999999999999999999999 777 7999
Q ss_pred cccccccCCCcCcCEEEEcCCCCCHhHHHHHhcccccCCCCcE--EEEEecCC
Q psy6409 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL--AVSFCTKD 1107 (1832)
Q Consensus 1057 Tdv~~rGlDip~v~~VI~~d~p~s~~~yvQr~GRaGR~g~~G~--ai~~~~~~ 1107 (1832)
|+++++|||++++++||+||+|.++..|.|++||++|.|+.+. ++.|++.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999998764 46777776
No 184
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=5e-15 Score=173.66 Aligned_cols=125 Identities=17% Similarity=0.228 Sum_probs=100.2
Q ss_pred chhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHc-CCcEEEEcCCCCHHHHHHHHHHhhCC-CCc-EEEEc
Q psy6409 1658 SEQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGG-SKD-ILVAT 1732 (1832)
Q Consensus 1658 ~~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~-~~~v~~lHg~ls~~~R~~il~~F~~g-~~~-VLVAT 1732 (1832)
....|...|.+++... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .++ +|+||
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 4567888888888765 6789999999999999999999884 99999999999999999999999998 777 78999
Q ss_pred ccccccCCCCCCCEEEEeCCCCCHHHHHHHhcccccCCCccEE--EEEeeCC
Q psy6409 1733 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKD 1782 (1832)
Q Consensus 1733 dvl~~GIDip~v~~VI~~d~P~s~~~yiQRiGRaGR~g~~G~a--i~~~~~~ 1782 (1832)
+++++|||++.+++||+||+|+++..|+|++||++|.|+.+.+ +.|++.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987654 5667766
No 185
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.88 E-value=7.9e-10 Score=144.31 Aligned_cols=136 Identities=23% Similarity=0.247 Sum_probs=90.8
Q ss_pred ChhhhhhcccccCCCcEEEEecCCCcch--hHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcC
Q psy6409 11 TPIQRQAIPIGLQNRDIIGVAETGSGKT--LAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 88 (1832)
Q Consensus 11 ~p~Q~~~ip~~l~g~d~~~~a~TGsGKT--laf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~ 88 (1832)
++.|++||+.++.++++++.|++||||| ++++++.|..+.. ..++.+++++||+++|.++.+.+..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----------SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----------cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 9999999964411 245689999999999999998877654
Q ss_pred CCccceEEEEeCCcchHHHhHHhhcCccEEE-cCchhhHHHhhhccccCCcceEEEEcccchhhcCCChHHHHHHHhhCC
Q psy6409 89 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVI-ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167 (1832)
Q Consensus 89 ~~~~~~~~~~~gg~~~~~q~~~l~~~~~Ilv-~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~ 167 (1832)
...++...+. .+.. .....+|-++ .+|+.. .+.. +....-.+++||||||+ |++ .+.+..|++.+|
T Consensus 221 ~~l~l~~~~~-~~~~------~~~~Tih~ll~~~~~~~-~~~~-~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 221 RQLPLTDEQK-KRIP------EDASTLHRLLGAQPGSQ-RLRH-HAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALP 287 (608)
T ss_dssp HHSSCCSCCC-CSCS------CCCBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCC
T ss_pred hcCCCCHHHH-hccc------hhhhhhHhhhccCCCch-HHHh-ccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCC
Confidence 4333322111 1110 0011223233 344432 1111 11122378999999999 888 688999999987
Q ss_pred cC
Q psy6409 168 VT 169 (1832)
Q Consensus 168 ~~ 169 (1832)
..
T Consensus 288 ~~ 289 (608)
T 1w36_D 288 DH 289 (608)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 186
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.46 E-value=1.8e-07 Score=122.07 Aligned_cols=134 Identities=24% Similarity=0.278 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHH--HHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKT--LAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKT--la~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
++.|..|++.++.++++++.|++||||| ++++++++..+. ...+.++++++||..+|.++.+.+...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----------~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----------SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----------hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 667777765321 1246789999999999999988887654
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCc-eeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHhCC
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~-IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~l~ 908 (1832)
..+++..... .+... + ....+ ++-.+|+.. . +.......-.+++||||||+ |++ .+.+..|+..++
T Consensus 221 ~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 221 RQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALP 287 (608)
T ss_dssp HHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCC
T ss_pred hcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCC
Confidence 4444321110 00000 0 00112 222344332 1 11111122378999999999 665 456677777664
No 187
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.48 E-value=0.00012 Score=96.69 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHcCCc-EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grd-vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
..+++-|.+|+..++..++ .||.||.|||||.+.+-.|.+.+ ..+.++|+++||...|.++.+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~------------~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV------------KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH------------HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH------------hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999998776 68899999999987544343322 1366899999999999999988876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 4
No 188
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.40 E-value=0.00026 Score=93.33 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1424 AEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~d-vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
..+++-|.+|+..++..++ .||.+|.|||||.+..-.+...+. .+.++|+++||..-|+++...+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~------------~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK------------QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH------------TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh------------CCCeEEEEcCchHHHHHHHHHHHh
Confidence 3689999999999998776 688899999999875544444332 356899999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 256 ~ 256 (646)
T 4b3f_X 256 C 256 (646)
T ss_dssp T
T ss_pred c
Confidence 5
No 189
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.35 E-value=0.00057 Score=89.55 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
+..+++.|.+|+..++.+.-++|.||+|+|||.+..- ++.++.. ..+.++|+++||...|.++...+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4678999999999999887899999999999987443 3333321 1466899999999999999888876
Q ss_pred h
Q psy6409 828 F 828 (1832)
Q Consensus 828 ~ 828 (1832)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
No 190
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.27 E-value=0.00086 Score=87.89 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
+..+++.|.+|+..++.+.-+++.||+|+|||.+..-.+ ..+.. ..+.++|+++||...+.++...+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 457899999999999987788999999999998754333 33322 1356799999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
No 191
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00091 Score=89.54 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
.+..+++.|.+|+..++.+.-++|.||.|||||.+..--+ .++.. ..+.++|+++||...|.++.+.+.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~----------~~~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSK----------IHKDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHH----------HHCCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHh----------CCCCeEEEEcCcHHHHHHHHHHHH
Confidence 3567899999999999987778999999999998754333 33321 035689999999999999999988
Q ss_pred Hh
Q psy6409 827 KF 828 (1832)
Q Consensus 827 ~~ 828 (1832)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 75
No 192
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.13 E-value=0.0012 Score=85.28 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHH
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~ 825 (1832)
..+++.|.+|+..++.++.+++.||.|+|||.+.. .++..+. ..+.++++++||...|..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~-----------~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAE-----------SLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHH-----------HTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHH-----------hcCCeEEEecCcHHHHHHhHhhh
Confidence 36899999999999999999999999999997632 2333221 14678999999999998776544
No 193
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0014 Score=87.81 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
+..+++.|.+|+..++.+.-++|.||.|||||.+..-.+...+.. .+.++|+++||...|.++...+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-----------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-----------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-----------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 457899999999999887778999999999998754333322211 256799999999999999998887
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
No 194
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.08 E-value=0.0012 Score=88.46 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHH
Q psy6409 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN 826 (1832)
Q Consensus 747 g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~ 826 (1832)
....+++.|.+|+..++.+.-++|.||.|+|||.+..- ++..+.. ..+.++|+++||...|.++.+.+.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHT----------TCSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHH----------cCCCcEEEEcCcHHHHHHHHHHHH
Confidence 34578999999999999888899999999999986443 3333321 145689999999999999988887
Q ss_pred Hh
Q psy6409 827 KF 828 (1832)
Q Consensus 827 ~~ 828 (1832)
..
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 195
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.99 E-value=0.001 Score=83.92 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred cCCCCCcHHHHHHHHHHHcC-----CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHH
Q psy6409 746 IGYAEPTPIQRQAIPIGLQN-----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820 (1832)
Q Consensus 746 ~g~~~pt~iQ~~ai~~il~g-----rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Q 820 (1832)
+.|..+++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++.. .....+++++||...|..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~----------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS----------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh----------cCCceEEEecCcHHHHHH
Confidence 46889999999999987542 38999999999999754 334443322 112479999999998887
Q ss_pred HHHHH
Q psy6409 821 IEEET 825 (1832)
Q Consensus 821 i~~~~ 825 (1832)
+...+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66554
No 196
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.98 E-value=0.0018 Score=86.54 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1423 ~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
...+++.|.+|+..++.+.-+++.||.|+|||.+..- ++..+.. ..+.++|+++||...|.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHT----------TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHH----------cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4578999999999999887889999999999987433 3333322 1356799999999999999888876
Q ss_pred h
Q psy6409 1503 F 1503 (1832)
Q Consensus 1503 ~ 1503 (1832)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 4
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0022 Score=80.92 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.3
Q ss_pred cCCCCCcHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHH
Q psy6409 1421 IGYAEPTPIQRQAIPIGLQN-----RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495 (1832)
Q Consensus 1421 ~g~~~ptpiQ~~ai~~il~g-----~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Q 1495 (1832)
+.|..+++-|.+|+..++.. ..+++.|+.|||||.+. ..++.++.. .....+++++||...|..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~----------~~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIS----------TGETGIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHH----------TTCCCEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHh----------cCCceEEEecCcHHHHHH
Confidence 45789999999999977532 38999999999999764 334444332 112469999999988877
Q ss_pred HHHHH
Q psy6409 1496 IEEET 1500 (1832)
Q Consensus 1496 i~~~~ 1500 (1832)
+...+
T Consensus 90 l~~~~ 94 (459)
T 3upu_A 90 LSKLS 94 (459)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65544
No 198
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.95 E-value=0.00041 Score=86.45 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.7
Q ss_pred EEEEccc
Q psy6409 268 TVYIGSV 274 (1832)
Q Consensus 268 ~~~~~~~ 274 (1832)
+||||.+
T Consensus 104 ~lfV~nL 110 (437)
T 3pgw_S 104 TLFVARV 110 (437)
T ss_pred EEEEeCC
Confidence 3334433
No 199
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.94 E-value=0.025 Score=74.58 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+++-|.+|+. ..+..++|.|+.|||||.+.+--+...+... .....++|++++|+.+|.++.+.+..+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--------~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--------NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC--------CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 578999999997 2356799999999999997655444433210 112357999999999999999999876
Q ss_pred c
Q psy6409 829 G 829 (1832)
Q Consensus 829 ~ 829 (1832)
.
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 4
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.92 E-value=0.0019 Score=83.30 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~ 1500 (1832)
.+++.|.+++..++.+..+++.+|.|+|||.+. ..++..+.. .+..+++++||...+..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-----------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhh
Confidence 689999999999999999999999999999763 233333322 3677999999999988766543
No 201
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.54 E-value=0.057 Score=71.10 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..+++-|.+|+. .....++|.|+.|||||.+.+--+...+... ......+|++++|+..+.++...+.++
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--------~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--------NCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTS--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhC--------CCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 478999999996 3356899999999999998665555444321 112357999999999999999999876
Q ss_pred c
Q psy6409 1504 G 1504 (1832)
Q Consensus 1504 ~ 1504 (1832)
.
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 3
No 202
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.10 E-value=0.032 Score=67.91 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=76.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|+|+|...+..+...+-+++..+-+.|||.++...++..+.. ..+..+++++|++.-|..+...+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999998876556779999999999999877666543321 246789999999999988887777654
Q ss_pred CCCC--Ce--EEEEEcCCchHHHHHHHhcCCceeec--CHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLG--IR--TVLVVGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~--i~--v~~~~Gg~~~~~~~~~l~~~~~IlV~--TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++ ++ +... +... ..+..|..|.+. +|+.+ .-.++.++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcC
Confidence 3222 11 1111 1100 112234444333 35444 23456899999999654
No 203
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.24 E-value=0.084 Score=64.16 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++-|..+...+..+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999999876666543322 246689999999999988777777654
Q ss_pred CCCC--C--eEEEEECCcchHHHHHHhhcCCcEEEe--CHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1505 TPLG--I--RTVLVVGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1505 ~~~g--~--~v~~l~gg~~~~~~~~~l~~~~~IiVa--TP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
.... + .+... ... ...+.+|..|.+. +|+.+ .-.+++++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~-~~~-----~I~f~nGs~i~~lsa~~~sl---------rG~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEW-NKG-----SIELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEE-CSS-----EEEETTSCEEEEEECSHHHH---------HTSCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccC-Ccc-----EEEeCCCCEEEEEECCCCCc---------cCCCCCEEEechhhhcC
Confidence 3221 1 11111 110 1112335555443 34433 12346899999999664
No 204
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.08 E-value=0.054 Score=70.36 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.|+|+|...+..+-..+.+++.++-|+|||.+....++..+.. ..+..+++++|++..|..+...++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 6899999988877556789999999999999876555543321 235689999999999999988888776
Q ss_pred CCCC--CeEEEE-EcCCchHHHHHHHhcCCceee--cCHHHHHHHHHccccccCCceeEEEecchhhh
Q psy6409 830 TPLG--IRTVLV-VGGLSREEQGFRLRLGCEIVI--ATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 830 ~~~~--i~v~~~-~Gg~~~~~~~~~l~~~~~IlV--~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
..++ +..... .+... ..+..|..|.+ +.|+.+ .-.+.+++|+||+|.+-
T Consensus 233 ~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l---------rG~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV---------RGNSFAMIYIEDCAFIP 286 (592)
T ss_dssp TTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH---------HHSCCSEEEEETGGGCT
T ss_pred HhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc---------cCCCcceEEEehhccCC
Confidence 5543 111111 11111 11223444443 335544 11246889999999654
No 205
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.28 E-value=0.13 Score=66.75 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.|+|+|...+..+...+-+++..+-|+|||.+....++..+.. ..+..+++++|+.+.|..+...++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 6899999998877556779999999999999876555544322 135689999999999999888888765
Q ss_pred CCCC--CeEEEE-ECCcchHHHHHHhhcCCcEEEe--CHHHHHHHHHccccccCCceeEEEccchhhh
Q psy6409 1505 TPLG--IRTVLV-VGGLSREEQGFRLRLGCEIVIA--TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1505 ~~~g--~~v~~l-~gg~~~~~~~~~l~~~~~IiVa--TP~rl~~~l~~~~~~l~~v~llViDEaH~ll 1567 (1832)
..++ +..... .... ...+.+|..|.+. .|+.+.. .+.+++|+||+|.+-
T Consensus 233 ~~~p~~~~~~~~~~~~~-----~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~ 286 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKG-----SIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIP 286 (592)
T ss_dssp TTSCTTTSCCEEEECSS-----EEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCT
T ss_pred HhChHhhccccccCCcc-----EEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCC
Confidence 5443 111001 0111 1112335544443 3554422 246899999999653
No 206
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.23 E-value=0.065 Score=70.85 Aligned_cols=110 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhc
Q psy6409 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~ 829 (1832)
.+|+-|.+|+.. .+..++|.|+.|||||.+.+--+...+... ......+|+|+.|+..|.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--------~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999875 367799999999999997555444433220 1134579999999999999999998874
Q ss_pred CCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHcccccc-C-CceeEEEecchh
Q psy6409 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL-N-QCTYIVLDEADR 890 (1832)
Q Consensus 830 ~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l-~-~~~~lViDEaH~ 890 (1832)
...+ ...+-|+|-..|...+.+..... . .-.+-|+|+.+.
T Consensus 72 ~~~~---------------------~~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~ 113 (673)
T 1uaa_A 72 GRKE---------------------ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQ 113 (673)
T ss_dssp CTTT---------------------TTTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHH
T ss_pred Cccc---------------------ccCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 3211 12467888888765554432111 1 124567787763
No 207
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.95 E-value=0.071 Score=65.57 Aligned_cols=86 Identities=20% Similarity=0.201 Sum_probs=53.9
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~ 846 (1832)
-.++.|+.|||||....- +.. ....+|++||++++..+.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~~-----~~~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-----RVN------------FEEDLILVPGRQAAEMIRRRANASGII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-----HCC------------TTTCEEEESCHHHHHHHHHHHTTTSCC---------------
T ss_pred EEEEEcCCCCCHHHHHHH-----Hhc------------cCCeEEEeCCHHHHHHHHHHhhhcCcc---------------
Confidence 378999999999985321 111 124699999999999888777543110
Q ss_pred HHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcC
Q psy6409 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894 (1832)
Q Consensus 847 ~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~ 894 (1832)
.....-|.|-+.++ +.......-.+++||||||- |++.
T Consensus 211 -------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~~ 248 (446)
T 3vkw_A 211 -------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLHT 248 (446)
T ss_dssp -------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSCH
T ss_pred -------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCCH
Confidence 01234477776653 22222122348999999998 5543
No 208
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.88 E-value=0.11 Score=69.31 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+++-|.+|+.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--------~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--------HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 356799999999999997555454433210 113357999999999999999988876
Q ss_pred cCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecchh
Q psy6409 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEADR 890 (1832)
Q Consensus 829 ~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH~ 890 (1832)
... . ...+-|+|-..|...+.+...... .-.+-|+|+.+.
T Consensus 80 l~~------------~----------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 80 LGG------------A----------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp HGG------------G----------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred hcc------------c----------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 321 0 123668898877655544322111 124678888774
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.50 E-value=0.4 Score=51.55 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHH---------cCCcEEEEecCCChHHHHHH
Q psy6409 752 TPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 752 t~iQ~~ai~~il---------~grdvIv~apTGSGKTla~l 783 (1832)
++.|.+++..+. .|+.++++||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665553 36789999999999998644
No 210
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.44 E-value=0.075 Score=57.91 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
|+-.+++||.|+|||..++--+..+. ..+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~------------~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK------------LGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH------------HTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH------------HCCCeEEEEeecc
Confidence 55578999999999997654443321 1356788888874
No 211
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=93.43 E-value=0.22 Score=58.49 Aligned_cols=120 Identities=12% Similarity=0.028 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHc--CCCCCEEEEEcccchHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEeccccc
Q psy6409 984 EQDKRKKLMEVLNR--GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061 (1832)
Q Consensus 984 ~~~k~~~L~~~l~~--~~~~~vIVFv~s~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~il~~F~~G~~~VLVaTdv~~ 1061 (1832)
...|+..|..+|.. ..+.+++||++..+.-+.+..+|...+++..-+.|.....++. -.++...|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 45566666666543 3567999999999999999999999999999999986553322 1245556666577666
Q ss_pred ccCC-----CcCcCEEEEcCCCCCHhH-HHHHhcccccCC----CCcEEEEEecCCC
Q psy6409 1062 RGID-----IKDVSMVINYDMAKSIED-YTHRIGRTGRAG----KEGLAVSFCTKDD 1108 (1832)
Q Consensus 1062 rGlD-----ip~v~~VI~~d~p~s~~~-yvQr~GRaGR~g----~~G~ai~~~~~~d 1108 (1832)
-|+| .-..+.||.||.-.++.. .+|.+-|+.|.| +.-.++.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 6776 568899999999887765 488777777763 3457888888874
No 212
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.42 E-value=0.22 Score=64.24 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHH
Q psy6409 750 EPTPIQRQAIPIGLQ--NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 827 (1832)
Q Consensus 750 ~pt~iQ~~ai~~il~--grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~ 827 (1832)
.+|.-|.+|+..++. ..-.++.|+-|.|||.+..+.+-.. ...++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---------------~~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---------------AGRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---------------SSCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---------------HhCcEEECCCHHHHHHHHHHhhC
Confidence 789999999998886 3347999999999997666544321 01369999999876644332211
Q ss_pred hcCCCCCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhhhcCCChHHHHHHHHh
Q psy6409 828 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906 (1832)
Q Consensus 828 ~~~~~~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d~gf~~~i~~Il~~ 906 (1832)
.|-+..|..+.. .+.++++||||||=.+. .+.+..++..
T Consensus 240 -----------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~ 278 (671)
T 2zpa_A 240 -----------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR 278 (671)
T ss_dssp -----------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT
T ss_pred -----------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh
Confidence 144567765421 34568999999998543 3455555543
No 213
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=93.38 E-value=0.27 Score=57.71 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHhC--CCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEccccc
Q psy6409 1659 EQDKRKKLMEVLNRG--VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736 (1832)
Q Consensus 1659 ~~~k~~~l~~~l~~~--~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~ 1736 (1832)
...|...|-.++... .+.+++||++..+.-+.+-.+|...++...-+.|.....++. -.++.+.|.+.|+...
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 456766666666542 567999999999999999999999999999999885443221 1245666666677666
Q ss_pred ccCC-----CCCCCEEEEeCCCCCHHH-HHHHhcccccC--C--CccEEEEEeeCCChhH
Q psy6409 1737 RGID-----IKDVSMVINYDMAKSIED-YTHRIGRTGRA--G--KEGLAVSFCTKDDSHL 1786 (1832)
Q Consensus 1737 ~GID-----ip~v~~VI~~d~P~s~~~-yiQRiGRaGR~--g--~~G~ai~~~~~~d~~~ 1786 (1832)
-|+| ....+.||.||.-+++.+ .+|.+-|+.|. | +.-.++-|++....+.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6786 568899999999888776 58888787775 2 3456777888775443
No 214
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.69 Score=54.68 Aligned_cols=21 Identities=19% Similarity=-0.105 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~l 1459 (1832)
.+.++++.+|+|+|||.+.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999987533
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.97 E-value=0.25 Score=53.19 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHH
Q psy6409 1427 TPIQRQAIPIGL---------QNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1427 tpiQ~~ai~~il---------~g~dvii~ApTGSGKTla~~ 1458 (1832)
++.|.+++..+. .|+.+++.+|+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665543 46889999999999998653
No 216
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.77 E-value=0.15 Score=67.51 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhc
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~ 1504 (1832)
.++|-|.+++.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++...+.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--------~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--------GYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHH--------CCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 578999999864 367899999999999998665555444321 1134569999999999999999998764
No 217
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.76 E-value=0.14 Score=57.49 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
|.-+++.|++|+|||++.+-.+..+. ..+.+++++.|...=- -...++..+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~------------~~g~kVli~~~~~d~r-----~~~~i~srlG~~~-------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE------------YADVKYLVFKPKIDTR-----SIRNIQSRTGTSL-------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEEECCCGG-----GCSSCCCCCCCSS--------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH------------hcCCEEEEEEeccCch-----HHHHHHHhcCCCc--------
Confidence 44578899999999987655444322 2466788888765310 0012222233211
Q ss_pred hHHHHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchhh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~l 891 (1832)
..+.+.+...+.+.+.... .-..+++||||||+.+
T Consensus 67 -----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1123455555656554422 2345899999999954
No 218
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.45 E-value=0.12 Score=56.69 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=27.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
|+=.+++||.|||||.+.+--+.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEecc
Confidence 44478899999999987655444322 2477899999874
No 219
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.24 E-value=0.13 Score=63.35 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=51.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~~ 1522 (1832)
.++.|+.|||||....--+ . ....+|++||++++..+.+.+.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~-----~------------~~~~lVlTpT~~aa~~l~~kl~~~~~~---------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRV-----N------------FEEDLILVPGRQAAEMIRRRANASGII---------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHC-----C------------TTTCEEEESCHHHHHHHHHHHTTTSCC----------------
T ss_pred EEEEcCCCCCHHHHHHHHh-----c------------cCCeEEEeCCHHHHHHHHHHhhhcCcc----------------
Confidence 6789999999998642111 0 124699999999998887776443110
Q ss_pred HHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1523 ~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
.....-|.|-+.++ +.......-.+++||||||- |++
T Consensus 211 ------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~ 247 (446)
T 3vkw_A 211 ------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLH 247 (446)
T ss_dssp ------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSC
T ss_pred ------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCC
Confidence 01123366766543 22222222348999999998 444
No 220
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.76 Score=54.34 Aligned_cols=20 Identities=15% Similarity=-0.155 Sum_probs=16.6
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
+.++++.||+|+|||++.-.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999986443
No 221
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.74 E-value=0.17 Score=55.39 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
|+=.++.+|.|||||.+.+-.+.++. ..+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~------------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK------------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH------------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEecc
Confidence 33467889999999987655444332 2467899999874
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.39 E-value=0.2 Score=54.56 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
|.=.++.+|.|+|||..++--+..+.. .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~------------~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL------------GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH------------TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEeecc
Confidence 455788999999999876443433221 356788888874
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.18 E-value=0.11 Score=54.37 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCcEEEEecCCCcchhH
Q psy6409 23 QNRDIIGVAETGSGKTLA 40 (1832)
Q Consensus 23 ~g~d~~~~a~TGsGKTla 40 (1832)
.|.-+++.+|+|+|||-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 788999999999999854
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.11 E-value=0.24 Score=55.62 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
|.=+++.+|+|+|||.+.+-.+..+. ..+.+++++.|...= . -...+...+|+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~------------~~g~kVli~~~~~d~--r---~~~~i~srlG~~~-------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE------------YADVKYLVFKPKIDT--R---SIRNIQSRTGTSL-------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEEECCCG--G---GCSSCCCCCCCSS--------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH------------hcCCEEEEEEeccCc--h---HHHHHHHhcCCCc--------
Confidence 44578889999999987655444332 136678888775420 0 0001122222110
Q ss_pred hHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhh
Q psy6409 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566 (1832)
Q Consensus 1520 ~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~l 1566 (1832)
..+-+.+...+...+.... .-..+++||||||+.+
T Consensus 67 -----------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 -----------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp -----------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred -----------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1233456666666655422 2345899999999964
No 225
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=90.68 E-value=0.33 Score=62.65 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy6409 1425 EPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNK 1502 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g--~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~ 1502 (1832)
.+|.-|.+++..++.- .-.++.|+-|.|||.+..+.+-.. ...++|.+|+.+=+..+.....+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---------------~~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---------------AGRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---------------SSCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---------------HhCcEEECCCHHHHHHHHHHhhC
Confidence 6899999999988862 347899999999997766555321 01269999988755533222111
Q ss_pred hcCCCCCeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhC
Q psy6409 1503 FGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582 (1832)
Q Consensus 1503 ~~~~~g~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l 1582 (1832)
.|-+..|..+. . ...++++||||||=.+- .+.+..++...
T Consensus 240 -----------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp----~pll~~ll~~~ 279 (671)
T 2zpa_A 240 -----------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP----APLLHQLVSRF 279 (671)
T ss_dssp -----------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC----HHHHHHHHTTS
T ss_pred -----------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC----HHHHHHHHhhC
Confidence 13334565432 1 24568999999998552 56677776644
No 226
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.39 E-value=0.77 Score=53.96 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+.+++++||+|+|||.++-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998654
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.36 E-value=1 Score=55.52 Aligned_cols=21 Identities=33% Similarity=0.085 Sum_probs=16.1
Q ss_pred CcEEEEecCCChHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpi 786 (1832)
+-++++|++|+|||+....-+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458888999999998654433
No 228
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=90.26 E-value=0.32 Score=68.66 Aligned_cols=126 Identities=18% Similarity=0.088 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 749 ~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+|+-|.++|..- +++++|.|.-|||||.+.+-=++..+.... ......++|+|++|+..|.++...+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 36799999998754 789999999999999986665555443210 0113457999999999999999988774
Q ss_pred cCCC-CCeEEEEEcCCchHHHHHHHhcCCceeecCHHHHHHHHHccccccC--CceeEEEecch
Q psy6409 829 GTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTYIVLDEAD 889 (1832)
Q Consensus 829 ~~~~-~i~v~~~~Gg~~~~~~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~--~~~~lViDEaH 889 (1832)
.... +- +... ..-...+..-..+-|+|-..+...+.+.....- .-.+-|+||..
T Consensus 81 l~~~~~~------~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 81 LEKELVQ------RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HHHHHHH------STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred HHHHhhc------Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 2210 00 0000 011111222356788998888755554432111 11344778765
No 229
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.18 E-value=0.32 Score=56.58 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--HcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQ-RQAIPIG--LQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ-~~ai~~i--l~grdvIv~apTGSGKTla~ 782 (1832)
|-..|+++.-.+..++.|.+.=. .+.+ .+.+... ..++.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887666666666654210 0000 1111111 23567999999999999854
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.18 Score=62.14 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 724 PDPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 724 p~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
..|-.+|++.+-.+...+.|.+. -+..|--++...++ -.+.+++.||.|+|||+.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 35667899998777777666532 11222222211110 1367999999999999853
No 231
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.92 E-value=2.1 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.5
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998654
No 232
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=89.81 E-value=0.45 Score=63.27 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1424 ~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
..++|-|.+|+.. .+..++|.|+.|||||.+..--+...+... ......+|+|+.|+..|.++.+.+.++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--------~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--------HVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--------CCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--------CCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999864 356899999999999998665555544321 113456999999999999998888765
No 233
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.56 E-value=2 Score=45.81 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999998643
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.54 E-value=0.31 Score=51.02 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.5
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|..++++||+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999853
No 235
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.02 E-value=0.96 Score=53.66 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..++++||+|+|||..+-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 236
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.61 E-value=0.77 Score=54.53 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||..+-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999998653
No 237
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.37 E-value=0.5 Score=52.33 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=26.3
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
.+++|+-|||||++++--+.++. ..+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQ------------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEeccC
Confidence 56788889999987666555432 24778999999763
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.14 E-value=1.7 Score=52.56 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||..+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999998653
No 239
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.13 E-value=2.7 Score=48.33 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
.++++.+|+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999998753
No 240
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.02 E-value=1.5 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 241
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.98 E-value=1.4 Score=52.60 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHH----cCC---cEEEEecCCChHHHHHHH
Q psy6409 752 TPIQRQAIPIGL----QNR---DIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 752 t~iQ~~ai~~il----~gr---dvIv~apTGSGKTla~ll 784 (1832)
.|+|.+++..+. .|+ -+++.||.|+|||..+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 466666655443 343 389999999999987554
No 242
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.75 E-value=0.33 Score=54.50 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.++++||+|+|||..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5779999999999998543
No 243
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.70 E-value=0.44 Score=57.95 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=30.3
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+=-+...+.|.+. -+..|--++.-.+ .-.+.+++.||.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 446899986555555555432 1111111111100 11367999999999999853
No 244
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.60 E-value=1.5 Score=52.13 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHH-----cCCcEEEEecCCChHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-----QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il-----~grdvIv~apTGSGKTla~l 783 (1832)
|-..|+++.-...+++.|...=. .| ...|... ..+.++++||+|+|||..+-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578888766677776654210 00 0011111 13569999999999998643
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.52 E-value=5 Score=43.70 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.9
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccch
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtr 815 (1832)
..+++..++|.|||.+++--++..+ ..|.+++|+.-.+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~------------g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV------------GHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH------------HTTCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH------------HCCCeEEEEEeeC
Confidence 3699999999999999887777654 3478899986544
No 246
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.51 E-value=0.54 Score=57.94 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+-.+...+.|.+. .+.+|--++...+ --.+.+|+.+|+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 4667899998777777776542 2223322222111 12378999999999999864
No 247
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.17 E-value=0.59 Score=56.79 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=32.7
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|--+|++.+--+...+.|++. .+.+|--++.-. +--.+.+|+.+|.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 446899987666666666542 122222221111 112378999999999999865
No 248
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.14 E-value=1.2 Score=50.70 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.8
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.++++||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998643
No 249
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=86.87 E-value=0.68 Score=65.28 Aligned_cols=71 Identities=21% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1425 ~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.+|+-|.++|..- +.+++|.|.-|||||.+.+--++..+.... .......+|+|++|++.|.++...+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 6899999998654 789999999999999987666665553310 0123457999999999999998888764
No 250
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.78 E-value=2.5 Score=50.08 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=30.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHHc-----CCcEEEEecCCChHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQ-----NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-----grdvIv~apTGSGKTla~l 783 (1832)
|-.+|++++-.+.+++.|.+.=. .|. -.|.++. .+.++++||+|+|||..+-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 34579888766666666653100 000 0011111 2679999999999998643
No 251
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.40 E-value=0.36 Score=59.54 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=30.0
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 725 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
.|--+|++.+--+...+.|.+. -+..|--++.-. +--.+-+|+.||.|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3446799887555555555431 111111111100 001367999999999999854
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.09 E-value=3.1 Score=51.28 Aligned_cols=57 Identities=19% Similarity=0.108 Sum_probs=32.4
Q ss_pred CcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEc--cchhHHHHHHHHHHHhcCCCCCeEE
Q psy6409 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA--PTRELAQQIEEETNKFGTPLGIRTV 837 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~Lila--PtreLa~Qi~~~~~~~~~~~~i~v~ 837 (1832)
.-++++|++|+|||+...--+. ++. ..|.++++++ |.|.-|.++.. .++...++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~-----------~~G~kVllv~~D~~R~aa~eqL~---~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQ-----------KRGYKVGVVCSDTWRPGAYHQLR---QLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHH-----------TTTCCEEEEECCCSSTHHHHHHH---HHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHH-----------HCCCeEEEEeCCCcchhHHHHHH---HHHHhcCCcEE
Confidence 3488999999999987554332 221 2355566555 55665544333 33333455443
No 253
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=85.84 E-value=0.78 Score=50.76 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=26.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.++.+|-|||||.+++--+.++. ..+.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~------------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQ------------FAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH------------HTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHH------------HCCCEEEEEEeccC
Confidence 45788999999988665555443 24778999999753
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.74 E-value=0.8 Score=56.34 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=29.3
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+--..+.+.|.+. -+..|--++..- +--.+-+++.||.|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446898886555555555431 111111111100 011356999999999999853
No 255
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.56 Score=57.83 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=31.4
Q ss_pred cccCcccCCCCHHHHHHHHHcC---CCCCcHHHHHHHHHH--HcCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIG---YAEPTPIQRQAIPIG--LQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g---~~~pt~iQ~~ai~~i--l~grdvIv~apTGSGKTla~ 782 (1832)
|--+|++.+--+.+.+.|.+.= +..| +.+..+ --.+.+|+.||.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4468999876666666665421 1111 111111 11367999999999999853
No 256
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.04 E-value=6 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
..++++++|+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999865
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=84.92 E-value=1.6 Score=51.26 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+.++++.+|+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998753
No 258
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.80 E-value=2.1 Score=50.38 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.4
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++++++.||||+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998644
No 259
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.80 E-value=0.56 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
|.=.+++||-|||||...+--+..+. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~------------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI------------YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH------------HcCCceEEEEeccC
Confidence 34478899999999986544443221 23677999999653
No 260
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.74 E-value=5 Score=43.72 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.7
Q ss_pred CcEEEEecCCChHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ 782 (1832)
..++++||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999854
No 261
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.69 E-value=2.3 Score=51.43 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=15.3
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||..+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 569999999999998643
No 262
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.64 E-value=4.5 Score=48.80 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.5
Q ss_pred cEEEEecCCChHHHHH
Q psy6409 767 DIIGVAETGSGKTLAF 782 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ 782 (1832)
.++++||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 263
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=84.50 E-value=2.2 Score=47.68 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=29.0
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtre 816 (1832)
|+=.+++|+-|||||.+.+--+.++. ..|.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~------------~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH------------TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCeEEEEeecCC
Confidence 44467788889999987666555432 35778999988753
No 264
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.37 E-value=0.67 Score=51.89 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.+..+++.+|+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999865
No 265
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.11 E-value=0.55 Score=57.35 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=30.5
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 725 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
.|-.+|++.+=-+...+.|.+. -+..|--++...+ --.+-+|+.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3456899886444555444431 1122222221111 01366999999999999853
No 266
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.88 E-value=2.4 Score=51.02 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998543
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.87 E-value=5.2 Score=49.12 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=31.2
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|-.+|++.+--+.+.+.|.+. .+.+|--++.-- +--.+.+|+.+|+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 446799886555666555431 111121111110 112378999999999999865
No 268
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.63 E-value=1.9 Score=52.67 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+--+...+.|.+. .+.+|--++..-+ --.+.+|+.+|.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3556899986555555555431 2223322221111 12378999999999999865
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.54 E-value=3 Score=51.35 Aligned_cols=19 Identities=37% Similarity=0.155 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~l 1459 (1832)
.-+++++|+|+|||.....
T Consensus 98 ~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578889999999986544
No 270
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.37 E-value=0.92 Score=52.99 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5679999999999998643
No 271
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.21 E-value=5.7 Score=43.28 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
.++++.+|+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999864
No 272
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.07 E-value=3.1 Score=51.58 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
...+++.+|+|+|||..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998653
No 273
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=82.90 E-value=3.2 Score=48.90 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+.++++.+|+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998654
No 274
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.77 E-value=0.84 Score=50.47 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
|.=.++.+|-|||||...+--+.++. ..+.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~------------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGI------------YAKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH------------HcCCceEEEEeccC
Confidence 33367889999999976544443322 13667999999653
No 275
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=82.55 E-value=1.2 Score=48.38 Aligned_cols=38 Identities=8% Similarity=0.001 Sum_probs=26.4
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPt 814 (1832)
|+=.+++||.|||||.-.+-.+-++. ..+.+++|+-|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~------------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHH------------HTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HcCCeEEEEccc
Confidence 45588999999999965444443332 135778998886
No 276
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.12 E-value=1.7 Score=55.23 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.6
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998654
No 277
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.88 E-value=2.5 Score=50.28 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.4
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
.++++.||+|+|||..+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999998643
No 278
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.78 E-value=3.4 Score=49.69 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
+..+++.+|+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 279
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.67 E-value=2.1 Score=52.72 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=32.9
Q ss_pred CcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
|--+|++.+--+.+.+.|++. .+.+|--++.-- +--.+.+|+.+|.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 446799987666777777642 111221111100 112478999999999999865
No 280
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.54 E-value=2.5 Score=51.16 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
+..+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999865
No 281
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.20 E-value=6.2 Score=47.55 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~ 1457 (1832)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999865
No 282
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=81.05 E-value=0.17 Score=60.67 Aligned_cols=118 Identities=9% Similarity=-0.023 Sum_probs=61.8
Q ss_pred ccccccCcccccccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHHhcchh----------
Q psy6409 1203 DYDRRFKRKKSPQCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKERYLGLV---------- 1270 (1832)
Q Consensus 1203 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~~~~~~---------- 1270 (1832)
-..+.+|+.+|.||+.+.+ ..++..+.+.++...+|..++.+.||+.+.+|.+| .++..|..+.....
T Consensus 13 l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~ 92 (339)
T 2q0z_X 13 VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 92 (339)
T ss_dssp ------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHH
T ss_pred eccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHH
Confidence 3456689999999999998 45555666778889999999999999999999776 77777765532111
Q ss_pred ----------------------------hhhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccc
Q psy6409 1271 ----------------------------KKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGID 1320 (1832)
Q Consensus 1271 ----------------------------~~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~ 1320 (1832)
...|.++++.+....++|...+.....++.++....|......-.+++++
T Consensus 93 K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 93 KTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 01233344445555667877777778888888888887655555566664
No 283
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.73 E-value=1.3 Score=54.12 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.+++.||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999998643
No 284
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.68 E-value=2.1 Score=54.31 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
+.+++.+|+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 679999999999998753
No 285
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.56 E-value=2 Score=52.95 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCcCCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1400 DPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1400 ~p~~~~~e~~L~~~ll~~l~~~---g~~~ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.|-.+|++.+--+...+.|.+. .+.+|--++.-. +--.+.+|+.+|+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3456799986555666555431 111221111110 012378999999999999875
No 286
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=80.05 E-value=4.9 Score=49.83 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCcEEEEecCCCcchhHh
Q psy6409 24 NRDIIGVAETGSGKTLAF 41 (1832)
Q Consensus 24 g~d~~~~a~TGsGKTlaf 41 (1832)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 287
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=79.94 E-value=15 Score=39.91 Aligned_cols=37 Identities=22% Similarity=0.105 Sum_probs=29.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
..+++..++|.|||.+++--++..+. .|.+|+|+.-.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------------~G~rV~~vQF~ 65 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------------HGKNVGVVQFI 65 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------------TTCCEEEEESS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEEee
Confidence 47999999999999998777776553 47788888543
No 288
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.78 E-value=3 Score=49.26 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=12.8
Q ss_pred CCceeEEEccchhhh
Q psy6409 1553 NQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1553 ~~v~llViDEaH~ll 1567 (1832)
....+|||||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999885
No 289
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.12 E-value=4.2 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHH
Q psy6409 1426 PTPIQRQAIPIGL----QNR---DIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1426 ptpiQ~~ai~~il----~g~---dvii~ApTGSGKTla~~l 1459 (1832)
++|+|.+++..+. .|+ .+++.+|.|+|||.++..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777766554 343 389999999999987543
No 290
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.94 E-value=2.6 Score=50.73 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.++++||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 291
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=78.51 E-value=1.7 Score=47.35 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPt 1489 (1832)
|+=.++.+|.|||||.-.+-.+-.+.. .+.+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~------------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI------------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH------------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEEccc
Confidence 445788999999999654444433322 25678888886
No 292
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.47 E-value=3.3 Score=50.46 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
.+++|+.+|+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998653
No 293
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=78.36 E-value=4.7 Score=45.00 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtr 1490 (1832)
|.=.++.++-|||||.+.+--+.++. ..+.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~------------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ------------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH------------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH------------HCCCeEEEEeecC
Confidence 44467788889999987665555443 3577899999864
No 294
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.26 E-value=2.6 Score=49.81 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=12.8
Q ss_pred CCceeEEEecchhhh
Q psy6409 878 NQCTYIVLDEADRMI 892 (1832)
Q Consensus 878 ~~~~~lViDEaH~l~ 892 (1832)
....+|||||+|.|.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 467899999999875
No 295
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=78.18 E-value=0.32 Score=58.01 Aligned_cols=116 Identities=10% Similarity=-0.121 Sum_probs=83.5
Q ss_pred ccccCcccccccccCcc-cccccCCCccccchhHhhhhccCchhhhhhcccch-HHHHHHHHHhcch-------------
Q psy6409 1205 DRRFKRKKSPQCEAQSS-RFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKE-REGEAIKERYLGL------------- 1269 (1832)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~el~~l~~~~~~~------------- 1269 (1832)
.+.+|+.+|.||+.+.+ ..+...+.+..+..++|..++.+.||+.+.+|.+| .++..|.......
T Consensus 11 ~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~~K 90 (328)
T 3im1_A 11 TLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFK 90 (328)
T ss_dssp TSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSSSHHHH
T ss_pred CCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCCCHHHH
Confidence 45689999999999988 45555666778899999999999999999988777 6777766542111
Q ss_pred --------------------------hhhhcceecccCcceeeccCCCcCCccccchhhhccccccccccccccccch
Q psy6409 1270 --------------------------VKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDI 1321 (1832)
Q Consensus 1270 --------------------------~~~~~~~~~~~~~~~~f~w~~~~~t~~~~~~l~~~~~~~~~~~~~~~~g~~~ 1321 (1832)
....+.++++.+....++|.. +.....++.++....|........++|++.
T Consensus 91 ~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~ 167 (328)
T 3im1_A 91 VFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNN 167 (328)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGSTTCCH
T ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCCCCCH
Confidence 001233344445555678888 778888888888888876555556666653
No 296
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.00 E-value=2.5 Score=52.95 Aligned_cols=116 Identities=13% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCCccceEEEEeC--
Q psy6409 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG-- 100 (1832)
Q Consensus 23 ~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~~~~~~~~~~g-- 100 (1832)
.|.-+.+.+-||||||++. ..+. +. .+. -+|||+|+..+|.|++++++.|.... +..+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~--a~l~---~~---------~~~-p~lvv~~~~~~A~~l~~~l~~~~~~~----v~~fp~~ 73 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLV--AEIA---ER---------HAG-PVVLIAPDMQNALRLHDEISQFTDQM----VMNLADW 73 (483)
T ss_dssp TTCEEEEECCCTTHHHHHH--HHHH---HH---------SSS-CEEEEESSHHHHHHHHHHHHHTCSSC----EEECCCC
T ss_pred CCCeEEEeCCCchHHHHHH--HHHH---HH---------hCC-CEEEEeCCHHHHHHHHHHHHhhCCCc----EEEEeCc
Confidence 5667888899999998753 2221 10 122 37999999999999999999986431 22222
Q ss_pred ------Ccc-----hHHHhHHhh----cCccEEEcCchhhHHHhhhcc-ccCCcceEEEEccc------chhhcCCChH
Q psy6409 101 ------GLS-----REEQGFRLR----LGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEA------DRMIDMGFEP 157 (1832)
Q Consensus 101 ------g~~-----~~~q~~~l~----~~~~Ilv~TPgrl~~~~~~~~-~~l~~~~~~vlDEa------d~~l~~gf~~ 157 (1832)
-.+ ...++..|. ....|||+|+.-|+..+-... +.-..+.+=|=||. .++.+|||+-
T Consensus 74 e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~GY~r 152 (483)
T 3hjh_A 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRH 152 (483)
T ss_dssp CSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHTTCEE
T ss_pred ccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHcCCee
Confidence 111 223333333 456799999988886553322 11122332222333 4677777754
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.99 E-value=15 Score=42.86 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=17.1
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
++.++++|++|+|||+....-+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5668999999999998654433
No 298
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=77.94 E-value=3 Score=49.55 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
.++++.+|+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999865
No 299
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.24 E-value=1.6 Score=51.11 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=14.8
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 300
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=76.22 E-value=8.7 Score=44.96 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.8
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
.+++.||+|+|||..+.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 59999999999998644
No 301
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=75.68 E-value=1.5 Score=51.30 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
+.+++.+|+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56899999999999865
No 302
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=75.23 E-value=2 Score=44.33 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=17.3
Q ss_pred HHcCCcEEEEecCCChHHHHH
Q psy6409 762 GLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla~ 782 (1832)
+..+.++++.||+|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999853
No 303
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=75.01 E-value=10 Score=41.78 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=16.1
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
|.-+++.||+|||||..+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 56689999999999975443
No 304
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.83 E-value=3.3 Score=48.71 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
...+++.+|+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999865
No 305
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.75 E-value=1.3 Score=53.49 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.6
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998654
No 306
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.31 E-value=7.4 Score=45.56 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred cEEEEcCCCchHHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~ 1458 (1832)
++++.+|+|+|||..+.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998653
No 307
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=74.27 E-value=1.9 Score=50.89 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
...++++||+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999998543
No 308
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=74.18 E-value=2.1 Score=44.22 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.7
Q ss_pred HcCCcEEEEecCCChHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~l 783 (1832)
..+.++++.||+|+|||.++-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999998654
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.78 E-value=2.7 Score=52.84 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
.+.+++.||+|+|||+++-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999998643
No 310
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.77 E-value=3.3 Score=51.71 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.2
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||+.+-
T Consensus 50 ~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999998543
No 311
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.29 E-value=5.4 Score=47.59 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.6
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
+++++||.|+|||..+-
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999998643
No 312
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.72 E-value=2.2 Score=52.98 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=35.1
Q ss_pred cccccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHH
Q psy6409 18 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 78 (1832)
Q Consensus 18 ip~~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~ 78 (1832)
+|.-.....++++|+||||||-++ -+++..+.. .+..++|+=|..|+..
T Consensus 47 ~~~~~~~~h~~i~G~tGsGKs~~~-~~li~~~~~-----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 47 MPRDAEPRHLLVNGATGTGKSVLL-RELAYTGLL-----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp CCGGGGGGCEEEEECTTSSHHHHH-HHHHHHHHH-----------TTCEEEEEEETTHHHH
T ss_pred cccccCcceEEEECCCCCCHHHHH-HHHHHHHHH-----------CCCcEEEEeCCCchhH
Confidence 444556889999999999999974 333333222 3567899999999864
No 313
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=72.34 E-value=9.5 Score=46.95 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~l 1459 (1832)
.-+++++++|+|||....-
T Consensus 101 ~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3578899999999987543
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.23 E-value=3.8 Score=50.89 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.3
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
..+|++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999998654
No 315
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.98 E-value=1.4 Score=58.57 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=35.6
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHH
Q psy6409 722 KVPDPVRNWKEASLPTEILEIIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 722 ~~p~p~~~f~~~~L~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~l 783 (1832)
.+..|-..|++.+.-....+.|.+. -...|.-++.-- +...+-+++.||.|+|||+.+-
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 3445667899998888888877653 112221111000 0012569999999999998543
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.63 E-value=6.2 Score=52.35 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~ 1457 (1832)
+.+|+.+|.|+|||+.+
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 57899999999999865
No 317
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=71.04 E-value=26 Score=41.80 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=14.5
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
.++++||.|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999998653
No 318
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.50 E-value=6 Score=49.07 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
.++|+.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998753
No 319
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.28 E-value=5.4 Score=47.56 Aligned_cols=31 Identities=10% Similarity=0.330 Sum_probs=20.4
Q ss_pred CCcceEEEEcccchhhcCCChHHHHHHHhhCC
Q psy6409 136 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167 (1832)
Q Consensus 136 l~~~~~~vlDEad~~l~~gf~~~~~~i~~~~~ 167 (1832)
..+.++|||||+|. |+......+.++++..|
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 34678999999998 55444455666666543
No 320
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=69.36 E-value=17 Score=45.48 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCCcEEEEECchhHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHhhCCCCcEEEEcccccccCCCCC
Q psy6409 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1743 (1832)
Q Consensus 1664 ~~l~~~l~~~~~~~vIVFv~s~~~a~~l~~~L~~~~~~v~~lHg~ls~~~R~~il~~F~~g~~~VLVATdvl~~GIDip~ 1743 (1832)
..|..++... +.+|||.|.|...++.|...|...++.+..... +. .+..|. |.|+...++.|+-+|+
T Consensus 372 ~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-~~---------~~~~g~--v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EASDRG--RYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-GG---------GCCTTC--EEEEESCCCSCEEETT
T ss_pred HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-hh---------hcCCCc--EEEEEcccccCcccCC
Confidence 4455555332 467899999999999999999888876554322 11 123444 5556667889998888
Q ss_pred CCEEEEe
Q psy6409 1744 VSMVINY 1750 (1832)
Q Consensus 1744 v~~VI~~ 1750 (1832)
..+||.-
T Consensus 439 ~klaVIT 445 (483)
T 3hjh_A 439 RNLALIC 445 (483)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8877763
No 321
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=69.27 E-value=5.1 Score=48.79 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.5
Q ss_pred CcEEE--EcCCCchHHHHHH
Q psy6409 1441 RDIIG--VAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii--~ApTGSGKTla~~ 1458 (1832)
..+++ .+|.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45778 8999999998653
No 322
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.91 E-value=15 Score=43.52 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCC
Q psy6409 1431 RQAIPIGLQNRD--IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 1508 (1832)
Q Consensus 1431 ~~ai~~il~g~d--vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g 1508 (1832)
...-..+..|+- +++.+|.|+|||..+ +.|+..+. +....
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla--------------------------------~~la~~l~------~~~~~ 76 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTI--------------------------------VALAREIY------GKNYS 76 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHH--------------------------------HHHHHHHH------TTSHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHH--------------------------------HHHHHHHc------CCCcc
Q ss_pred CeEEEEECCcchHHHHHHhhcCCcEEEeCHHHHHHHHHccccccCCceeEEEccchhhhcCCChHHHHHHHHhCCCCCCC
Q psy6409 1509 IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588 (1832)
Q Consensus 1509 ~~v~~l~gg~~~~~~~~~l~~~~~IiVaTP~rl~~~l~~~~~~l~~v~llViDEaH~ll~~gf~~~l~~Il~~l~~~~~~ 1588 (1832)
..+..+............ +.+..+............++|+||+|.|.. .....+..++...+
T Consensus 77 ~~~~~~~~~~~~~~~~ir------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-~~~~~L~~~le~~~----- 138 (340)
T 1sxj_C 77 NMVLELNASDDRGIDVVR------------NQIKDFASTRQIFSKGFKLIILDEADAMTN-AAQNALRRVIERYT----- 138 (340)
T ss_dssp HHEEEECTTSCCSHHHHH------------THHHHHHHBCCSSSCSCEEEEETTGGGSCH-HHHHHHHHHHHHTT-----
T ss_pred ceEEEEcCcccccHHHHH------------HHHHHHHhhcccCCCCceEEEEeCCCCCCH-HHHHHHHHHHhcCC-----
Q ss_pred CCCchhhhHHHHHhhhccccCcceEEEEE
Q psy6409 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFT 1617 (1832)
Q Consensus 1589 ~~~~~~~~~~~l~~~~~~~~~~~q~v~~S 1617 (1832)
....+++.+
T Consensus 139 --------------------~~~~~il~~ 147 (340)
T 1sxj_C 139 --------------------KNTRFCVLA 147 (340)
T ss_dssp --------------------TTEEEEEEE
T ss_pred --------------------CCeEEEEEe
No 323
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=68.83 E-value=2.6 Score=48.32 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.4
Q ss_pred HcCCcEEEEecCCChHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~ 782 (1832)
..|.-++++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34667999999999999853
No 324
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.46 E-value=11 Score=45.76 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.4
Q ss_pred CcEEE--EecCCChHHHHHH
Q psy6409 766 RDIIG--VAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv--~apTGSGKTla~l 783 (1832)
..+++ +||.|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45788 8999999998543
No 325
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=68.36 E-value=11 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.104 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLL 1462 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil 1462 (1832)
.|.=+++.|++|+|||..++-.+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345588899999999976544443
No 326
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=67.58 E-value=21 Score=41.76 Aligned_cols=18 Identities=22% Similarity=-0.119 Sum_probs=15.0
Q ss_pred cEEEEecCCChHHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ll 784 (1832)
.+|+.||.|+|||.++..
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 20 SILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999986544
No 327
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=67.03 E-value=12 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.114 Sum_probs=16.8
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.-+++.|++|+|||..++.-+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4558999999999997554433
No 328
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.81 E-value=11 Score=44.60 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=31.7
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH-HHHHHHHHHHh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL-AQQIEEETNKF 828 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL-a~Qi~~~~~~~ 828 (1832)
|.-+++.||+|+|||..++-.+.... .+.. ....+..++|+.--..+ ..++...+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~--~~~~----~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPE----KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT--SCGG----GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh--cccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 56699999999999986554333211 1100 01124577877654332 34444444444
No 329
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=66.31 E-value=29 Score=40.02 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=18.3
Q ss_pred CHHHHHHHHHccccccCCceeEEEecchhhhc
Q psy6409 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893 (1832)
Q Consensus 862 TP~rL~d~l~~~~~~l~~~~~lViDEaH~l~d 893 (1832)
+++.+...+. ........++|||||...+.+
T Consensus 131 ~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 131 ETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp CHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred CHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 5666655544 222456789999999997663
No 330
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=65.81 E-value=3.9 Score=42.14 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.9
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q psy6409 1438 LQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1438 l~g~dvii~ApTGSGKTla~~ 1458 (1832)
..+.++++.+|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999998763
No 331
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=65.52 E-value=21 Score=40.96 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=18.7
Q ss_pred HcCCcEEEEecCCChHHHHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~llpi 786 (1832)
..|.-++++||+|||||+.+..-+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 356779999999999998655444
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=65.38 E-value=4.3 Score=48.74 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=14.5
Q ss_pred CCcEEEEecCCChHHHH
Q psy6409 765 NRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 765 grdvIv~apTGSGKTla 781 (1832)
+..++++||||||||+.
T Consensus 123 ~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 44699999999999984
No 333
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.34 E-value=3.9 Score=42.03 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=17.8
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q psy6409 1437 GLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1437 il~g~dvii~ApTGSGKTla~ 1457 (1832)
+..+.++++.+|+|+|||.++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345689999999999999865
No 334
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=64.97 E-value=12 Score=46.29 Aligned_cols=114 Identities=19% Similarity=0.049 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
|.=+++.|++|+|||..++-.+...... .+..|+|+..--. ..|+...+..........- ...|..+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-----------~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~-l~~g~l~ 266 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-----------EGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNR-VRLGQLT 266 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTT-CCGGGCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHH-HhCCCCC
Confidence 3457889999999997554433332211 2445777765211 2233333321111111100 0112232
Q ss_pred hHHHHHHh------hcCCcEEEe-----CHHHHHHHHHccccccCCceeEEEccchhhhc
Q psy6409 1520 REEQGFRL------RLGCEIVIA-----TPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568 (1832)
Q Consensus 1520 ~~~~~~~l------~~~~~IiVa-----TP~rl~~~l~~~~~~l~~v~llViDEaH~ll~ 1568 (1832)
..+ +..+ .....+.|- |+..+...+..- ..-..+++||||..+.|..
T Consensus 267 ~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l-~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 267 DRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRL-VSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHH-HHHSCCCEEEEECGGGCBC
T ss_pred HHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEcChhhcCC
Confidence 221 1111 113346553 455555444331 1123689999999998764
No 335
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=64.30 E-value=9.8 Score=45.81 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=20.1
Q ss_pred CCCcEEEEecCCCcchhHhhHhHHHHH
Q psy6409 23 QNRDIIGVAETGSGKTLAFLLPLLVWI 49 (1832)
Q Consensus 23 ~g~d~~~~a~TGsGKTlaf~lP~l~~~ 49 (1832)
.|.=+++.++.||||| +|++.++..+
T Consensus 73 ~G~li~I~G~pGsGKT-tlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKT-TLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChH-HHHHHHHHHH
Confidence 5788999999999999 4666666443
No 336
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=63.06 E-value=16 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.009 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.-+++.|++|+|||..++--+
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia 221 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIA 221 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3458999999999997544433
No 337
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=62.84 E-value=12 Score=46.86 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.5
Q ss_pred CcEEEEecCCChHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ 782 (1832)
+.++++||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34999999999999854
No 338
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.27 E-value=6.1 Score=49.86 Aligned_cols=39 Identities=23% Similarity=0.022 Sum_probs=25.5
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHH
Q psy6409 741 EIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 741 ~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla 781 (1832)
..|.+.|. +++.+..-+.. +..|.+++++||||||||+.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34445563 23444444443 34688899999999999984
No 339
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=61.82 E-value=15 Score=43.25 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=32.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH-HHHHHHHHHHh
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL-AQQIEEETNKF 1503 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL-a~Qi~~~~~~~ 1503 (1832)
.|.-+++.+|+|+|||..++-.+.... .+.. ....+..++|+.--..+ ..++...+..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~--~~~~----~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQ--LPPE----KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTT--SCGG----GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHh--cccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 356689999999999986544333211 1100 01124578888654322 34444445554
No 340
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.09 E-value=14 Score=53.56 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=30.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
++++++++|+|+|||..+.-.+.... ..|.+++|+..--.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEcccccCH
Confidence 68899999999999987655444321 34677888886644433
No 341
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=61.00 E-value=6.1 Score=57.18 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtre 1491 (1832)
.++++++.+|+|+|||..+.-.+.... ..|.+|+|+..--.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEcccc
Confidence 468999999999999987655444322 24677888886533
No 342
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=61.00 E-value=6.6 Score=48.52 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~ 1494 (1832)
..+++++|+||||||... .+++..+.. .+..++|+=|--++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~-----------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL-----------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH-----------TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH-----------CCCcEEEEeCCCchhH
Confidence 479999999999999974 333333222 3567889999888854
No 343
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.28 E-value=7 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.179 Sum_probs=17.8
Q ss_pred CCcEEEEecCCChHHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLL 787 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil 787 (1832)
|+-+++.||.|||||..++..+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56699999999999986554443
No 344
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=58.25 E-value=15 Score=39.72 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~ 1458 (1832)
.++++.+|+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 789999999999998653
No 345
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=57.37 E-value=10 Score=41.15 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+.++++||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998643
No 346
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=56.77 E-value=7.6 Score=47.66 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.5
Q ss_pred CCcEEEEecCCChHHHH
Q psy6409 765 NRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 765 grdvIv~apTGSGKTla 781 (1832)
|.-++++||||||||+.
T Consensus 167 ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 44589999999999984
No 347
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=56.75 E-value=9.9 Score=45.53 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=49.8
Q ss_pred CCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHHHHHHHHHHHhcCCCccceEEEEeCCc
Q psy6409 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 102 (1832)
Q Consensus 23 ~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreLa~qi~~~~~~~~~~~~~~~~~~~gg~ 102 (1832)
.|.=+++.+|.|||||. +++.++..+.. .+..+++|..-..+. ++ .+++++...
T Consensus 60 ~G~i~~I~GppGsGKST-Lal~la~~~~~-----------~gg~VlyId~E~s~~-~~--ra~rlgv~~----------- 113 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTT-LALHAIAEAQK-----------MGGVAAFIDAEHALD-PV--YAKNLGVDL----------- 113 (356)
T ss_dssp TTEEEEEEESTTSSHHH-HHHHHHHHHHH-----------TTCCEEEEESSCCCC-HH--HHHHHTCCG-----------
T ss_pred CCcEEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEecccccc-hH--HHHHcCCch-----------
Confidence 47788999999999994 55555533321 344567766543222 21 334443321
Q ss_pred chHHHhHHhhcCccEEEcCchhhHHHhhhc--cccCCcceEEEEcccchhh
Q psy6409 103 SREEQGFRLRLGCEIVIATPGRLIDVLENR--YLVLNQCTYIVLDEADRMI 151 (1832)
Q Consensus 103 ~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~--~~~l~~~~~~vlDEad~~l 151 (1832)
-++++..|..+.+.+..- .+.-..++++|||.+-.+.
T Consensus 114 ------------~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 114 ------------KSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp ------------GGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred ------------hhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 124444454444433221 1122468899999987665
No 348
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.56 E-value=18 Score=48.84 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.9
Q ss_pred CcEEEEecCCChHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ll 784 (1832)
.+++++||+|+|||..+-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999986443
No 349
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=56.51 E-value=12 Score=44.35 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.|.=+++.|++|+|||..++-.+..... .+..|+|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~------------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN------------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH------------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeC
Confidence 3445888999999999865443333221 3556777765
No 350
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=56.21 E-value=17 Score=42.13 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=18.2
Q ss_pred cccCCCcEEEEecCCCcchhHhh
Q psy6409 20 IGLQNRDIIGVAETGSGKTLAFL 42 (1832)
Q Consensus 20 ~~l~g~d~~~~a~TGsGKTlaf~ 42 (1832)
-+..|.=++++|++|+|||.-..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHH
Confidence 35578888899999999996543
No 351
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=55.72 E-value=44 Score=38.95 Aligned_cols=17 Identities=24% Similarity=-0.072 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~ 1458 (1832)
..|+.+|.|+|||.++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 352
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=55.42 E-value=13 Score=41.50 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=30.5
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
.|.-++++||+|+|||..++--+...+ ..+..++|+.-. +-..++...+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~------------~~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL------------KMGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH------------HTTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH------------hcCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 356789999999999986544333221 124456666532 2345555555543
No 353
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=55.41 E-value=35 Score=39.86 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=15.5
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-+++++|+|+|||+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34578999999999986544
No 354
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.30 E-value=10 Score=41.79 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 748 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 748 ~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
+..-+.-|..++..+..|.-+.++||.|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44445567778888888888999999999999843
No 355
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.26 E-value=14 Score=43.29 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=28.1
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHH
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~ 819 (1832)
-+++.+|.|+|||...+-.+..... ...+.+++|+..-..+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~----------~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR----------QYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH----------HCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh----------cCCCceEEEEeccchhhH
Confidence 4789999999999865544433221 113567888887655543
No 356
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=55.26 E-value=8 Score=51.77 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.+..+++.+|+|+|||..+
T Consensus 510 ~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHH
T ss_pred CCceeEEECCCCCCHHHHH
Confidence 3567999999999999865
No 357
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=55.12 E-value=12 Score=44.81 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCChHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ll 784 (1832)
.+.+++++||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999996543
No 358
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=54.93 E-value=11 Score=44.27 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=17.1
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.-+++.||+|+|||..++-.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998654433
No 359
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.39 E-value=5.8 Score=46.98 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.0
Q ss_pred CcEEEEecCCChHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~l 783 (1832)
+-++++||||||||..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998644
No 360
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=53.99 E-value=6.2 Score=42.17 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999854
No 361
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=53.91 E-value=8.1 Score=46.27 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=20.2
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778887 788899999999863
No 362
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.85 E-value=21 Score=42.01 Aligned_cols=19 Identities=26% Similarity=0.032 Sum_probs=15.7
Q ss_pred cCCCcEEEEecCCCcchhH
Q psy6409 22 LQNRDIIGVAETGSGKTLA 40 (1832)
Q Consensus 22 l~g~d~~~~a~TGsGKTla 40 (1832)
..|.=+++.|++|||||.-
T Consensus 96 ~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp ETTEEEEEEESTTSSHHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3577899999999999853
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=53.85 E-value=7.4 Score=46.82 Aligned_cols=20 Identities=45% Similarity=0.423 Sum_probs=17.2
Q ss_pred HHcCCcEEEEecCCChHHHH
Q psy6409 762 GLQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla 781 (1832)
+..|..++++||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
No 364
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.49 E-value=10 Score=46.01 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=29.0
Q ss_pred cCCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
.+.+++++|+||||||.....-+.+.. ..+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY------------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH------------HCCCEEEEEeCCcCH
Confidence 456899999999999986444333221 235678888887764
No 365
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=52.90 E-value=5.5 Score=46.55 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=13.6
Q ss_pred EEEEecCCChHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFL 783 (1832)
Q Consensus 768 vIv~apTGSGKTla~l 783 (1832)
++++||||||||..+.
T Consensus 13 i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 13 IFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 7889999999998543
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=52.87 E-value=10 Score=45.47 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=25.5
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL 817 (1832)
|.-+++.||.|||||..++. +...+. ..+..++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~-la~~~~-----------~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALH-AIAEAQ-----------KMGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHH-HHHHHH-----------HTTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHH-----------hcCCeEEEEeccccc
Confidence 45689999999999975433 332221 134567777654433
No 367
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.65 E-value=5.6 Score=46.58 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.1
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
-++++||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999998543
No 368
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=52.38 E-value=46 Score=39.28 Aligned_cols=18 Identities=39% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCcEEEEecCCChHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ 782 (1832)
|.-+.++||+|||||+..
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999843
No 369
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=52.37 E-value=16 Score=42.90 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=50.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHhcCCCCCeEEEEECCcchH
Q psy6409 1442 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~~~~~g~~v~~l~gg~~~~ 1521 (1832)
-+++.+|.|+|||...+-.+...... ..+..++|+..-..+... .+++++-...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~----------g~g~~vlyId~E~s~~~~---ra~~lGvd~d------------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ----------YPDAVCLFYDSEFGITPA---YLRSMGVDPE------------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH----------CTTCEEEEEESSCCCCHH---HHHHTTCCGG-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----------CCCceEEEEeccchhhHH---HHHHhCCCHH-------------
Confidence 47889999999998755444332211 135678888875554322 3555532211
Q ss_pred HHHHHhhcCCcEEEeC---HHHH-HHHHHcc-ccccCCceeEEEccchhhh
Q psy6409 1522 EQGFRLRLGCEIVIAT---PGRL-IDVLENR-YLVLNQCTYIVLDEADRMI 1567 (1832)
Q Consensus 1522 ~~~~~l~~~~~IiVaT---P~rl-~~~l~~~-~~~l~~v~llViDEaH~ll 1567 (1832)
++++.. .+.+ +.++..- .+.-..+++||||=+..|.
T Consensus 84 ----------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 ----------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ----------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ----------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 233333 3333 3322211 1233468999999998764
No 370
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=52.23 E-value=34 Score=39.75 Aligned_cols=20 Identities=30% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-+.+++++|+|||..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45577889999999976444
No 371
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=52.23 E-value=4.1 Score=47.72 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=30.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HHcCCcEEEEecCCChHHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ~~ai~~-il~grdvIv~apTGSGKTla~l 783 (1832)
|-.+|++++-...+++.|.+.-. .|.......... +..++.++++||+|+|||+.+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 44578888666666665553200 000000000001 1235679999999999998643
No 372
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=52.15 E-value=8.6 Score=43.77 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.+..++++||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999854
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.74 E-value=38 Score=41.44 Aligned_cols=22 Identities=27% Similarity=0.060 Sum_probs=16.1
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
++-+++++++|+|||+....-+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3457788999999998654433
No 374
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=51.65 E-value=9.1 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|.||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4556677877 778899999999864
No 375
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=51.44 E-value=8.4 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455677887 778899999999863
No 376
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=51.33 E-value=9.3 Score=45.13 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455678887 788899999999863
No 377
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=51.17 E-value=6.3 Score=42.04 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.8
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++.++++|++|||||.++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999997554
No 378
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=51.04 E-value=14 Score=46.31 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCChHHHHH
Q psy6409 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 753 ~iQ~~ai~~il~grdvIv~apTGSGKTla~ 782 (1832)
.+=..++..+..+.+++++||+|+|||..+
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333455566677899999999999999853
No 379
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.98 E-value=27 Score=47.08 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~l 1459 (1832)
.++++++|+|+|||..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5799999999999986543
No 380
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=50.91 E-value=8.8 Score=45.78 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555677877 778899999999864
No 381
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.75 E-value=9.6 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.8
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677788888 677899999999874
No 382
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=50.62 E-value=32 Score=42.78 Aligned_cols=19 Identities=32% Similarity=0.223 Sum_probs=14.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
|.-+.++|++|||||+...
T Consensus 293 GeVI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIG 311 (503)
T ss_dssp TEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCcccHHHHHH
Confidence 3458899999999998543
No 383
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=50.61 E-value=8.9 Score=45.85 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678888 678899999999864
No 384
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=50.39 E-value=19 Score=42.69 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=16.5
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.=+++.|++|+|||..++--+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia 67 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMV 67 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4458999999999997544433
No 385
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=50.32 E-value=10 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLA 781 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla 781 (1832)
.+..++.|.| ++..|+||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 3455678887 77889999999986
No 386
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.27 E-value=39 Score=36.92 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccCCCcEEEEecCCCcchhHhhHhHHHHHhhccccccccccCCCceEEEEcccHHH-HHHHHHHHHhcCCCcc--ceEEE
Q psy6409 21 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL-AQQIEEETNKFGTPLG--IRTVL 97 (1832)
Q Consensus 21 ~l~g~d~~~~a~TGsGKTlaf~lP~l~~~~~~~~~~~~~~~~~~~~~lvl~PtreL-a~qi~~~~~~~~~~~~--~~~~~ 97 (1832)
+-.|.=+.+++|+||||| -++-.|..+...+.... .....++++.....+ ..++...++.++.... .....
T Consensus 22 i~~G~~~~l~G~nGsGKS--Tll~~l~g~~~~~~~~g----~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 95 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKT--QLAHTLAVMVQLPPEEG----GLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIY 95 (231)
T ss_dssp EESSEEEEEEESTTSSHH--HHHHHHHHHTTSCGGGT----CCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEE
T ss_pred CCCCcEEEEECCCCCCHH--HHHHHHHHHHhcccccC----CCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEE
Q ss_pred EeCCcchHHHhHHhhcCccEEEcCchhhHHHhhhccccCCcceEEEEcccchhhc
Q psy6409 98 VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 152 (1832)
Q Consensus 98 ~~gg~~~~~q~~~l~~~~~Ilv~TPgrl~~~~~~~~~~l~~~~~~vlDEad~~l~ 152 (1832)
+........+...+ .++..++..-.-...+.++|||||.-.+++
T Consensus 96 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 96 VARAFNSNHQMLLV-----------QQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEECCSHHHHHHHH-----------HHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEecCChHHHHHHH-----------HHHHHHHHHhcccCCceeEEEECChHHHhc
No 387
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=50.04 E-value=22 Score=49.81 Aligned_cols=89 Identities=18% Similarity=0.080 Sum_probs=51.7
Q ss_pred EEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCchHH
Q psy6409 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847 (1832)
Q Consensus 768 vIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~~~~ 847 (1832)
-+|.|..|||||.+.+-=|...+.. ...+..+|+|||.. +..++...+... ++..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~---------~~~~~~il~lVP~q-~TFt~~~rl~~~---l~~~------------ 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRR---------APFGKPIIFLVPDQ-MTFLMEYELAKT---PDMG------------ 58 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHH---------CTTSSCEEEECCGG-GHHHHHHHHTCC---SSCS------------
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh---------CCCCCcEEEEecCc-ccHHHHHHHHHh---hhhc------------
Confidence 3789999999999765555443322 12456899999976 444444444333 2210
Q ss_pred HHHHHhcCCceeecCHHHHHHHHHccccccCCceeEEEecchh
Q psy6409 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890 (1832)
Q Consensus 848 ~~~~l~~~~~IlV~TP~rL~d~l~~~~~~l~~~~~lViDEaH~ 890 (1832)
....+-|+|-.+|...+.+..- ....-|+|+.+.
T Consensus 59 ------~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 ------GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp ------EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred ------ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0134678888777655544321 233456777663
No 388
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.73 E-value=10 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLA 781 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla 781 (1832)
.+..+++|.| ++..|+||||||..
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4566678888 67789999999986
No 389
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=49.63 E-value=9.2 Score=45.96 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|.||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455678887 778899999999853
No 390
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.61 E-value=8.9 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLA 781 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla 781 (1832)
.+..++.|.| ++..|.||||||..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4555678887 77889999999985
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=49.53 E-value=9.9 Score=42.55 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred ccCCCcEEEEecCCCcchhHhhHhH--HHHHhhccccccccccC-CCceEEEEcccHHHHHHHHHHHHhcCCCccceEEE
Q psy6409 21 GLQNRDIIGVAETGSGKTLAFLLPL--LVWIQSLPKIARMEDAD-QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL 97 (1832)
Q Consensus 21 ~l~g~d~~~~a~TGsGKTlaf~lP~--l~~~~~~~~~~~~~~~~-~~~~~lvl~PtreLa~qi~~~~~~~~~~~~~~~~~ 97 (1832)
+-.|.=+.+.+|+|||||-.+.+=+ . . ..+...++.-..+...++...++.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------- 83 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG---------------AEEYGEPGVFVTLEERARDLRREMASFGW-------- 83 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH---------------HHHHCCCEEEEESSSCHHHHHHHHHTTTC--------
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH---------------HHhCCCeEEEEEccCCHHHHHHHHHHcCC--------
Q ss_pred EeCCcchHHHhHHhhcCccEE----------------EcCchhhHHHhhh--ccccCCcceEEEEcccchhhc-----CC
Q psy6409 98 VVGGLSREEQGFRLRLGCEIV----------------IATPGRLIDVLEN--RYLVLNQCTYIVLDEADRMID-----MG 154 (1832)
Q Consensus 98 ~~gg~~~~~q~~~l~~~~~Il----------------v~TPgrl~~~~~~--~~~~l~~~~~~vlDEad~~l~-----~g 154 (1832)
..|.........++ ...+..+...... ..+...+.++|||||.-.++| ..
T Consensus 84 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~ 156 (251)
T 2ehv_A 84 -------DFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERK 156 (251)
T ss_dssp -------CHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGG
T ss_pred -------ChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHH
Q ss_pred ChHHHHHHHhhC
Q psy6409 155 FEPDVQKILEYM 166 (1832)
Q Consensus 155 f~~~~~~i~~~~ 166 (1832)
....+..++..+
T Consensus 157 ~~~~l~~l~~~l 168 (251)
T 2ehv_A 157 IREVLLKLNTIL 168 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 392
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.44 E-value=17 Score=54.59 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHH
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIP----IGLQNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~----~il~g~dvii~ApTGSGKTla~~l 1459 (1832)
+...+.+.+.+.|+ .|++.+..-+. .+.....+++++|||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 44566777778888 57777644333 334567899999999999998754
No 393
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=49.34 E-value=10 Score=45.18 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|+||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455677877 778899999999863
No 394
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=49.29 E-value=10 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 757 QAIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 757 ~ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
..+..++.|.| ++..|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667778887 778899999999864
No 395
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.24 E-value=7.6 Score=44.41 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=23.9
Q ss_pred cccccCCCCChhhhhhcccccCCCcEEEEecCCCcchhHh
Q psy6409 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 41 (1832)
Q Consensus 2 ~~~~~~~~~~p~Q~~~ip~~l~g~d~~~~a~TGsGKTlaf 41 (1832)
++.+||. ++=...- +..|.=+++++|||||||-.+
T Consensus 8 l~~l~~~---~vl~~i~--i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 8 FKKLGLP---DKVLELC--HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GGGSSCC---THHHHGG--GCSSEEEEEECSTTCSHHHHH
T ss_pred hHHCCCH---HHHHHHh--hCCCCEEEEECCCCccHHHHH
Confidence 4667774 2222222 567888999999999998644
No 396
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=49.20 E-value=10 Score=45.44 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455677887 778899999999863
No 397
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.15 E-value=21 Score=42.55 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhH-HHHHHHHHHHh
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL-AQQIEEETNKF 828 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreL-a~Qi~~~~~~~ 828 (1832)
|.-+++.||+|||||..++-.+.... .+.. ....+..++|+.-...+ ..++...+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~--~~~~----~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQ--LPGA----GGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTT--SCBT----TTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh--cccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 45689999999999986544333211 1100 01135578887754432 23444444443
No 398
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=49.05 E-value=6.4 Score=42.92 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.7
Q ss_pred ccCCCcEEEEecCCCcch-hHhh
Q psy6409 21 GLQNRDIIGVAETGSGKT-LAFL 42 (1832)
Q Consensus 21 ~l~g~d~~~~a~TGsGKT-laf~ 42 (1832)
...|+-+++++||||||| +|..
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHH
T ss_pred EECCEEEEEECCCCCCHHHHHHH
Confidence 456888999999999997 5543
No 399
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=49.05 E-value=8.6 Score=45.63 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.8
Q ss_pred HcCCcEEEEecCCChHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLA 781 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla 781 (1832)
..|..++++||||||||+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4588999999999999983
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=48.97 E-value=17 Score=54.65 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH----HHHHHHcCCcEEEEecCCChHHHHHHH
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQ----AIPIGLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~----ai~~il~grdvIv~apTGSGKTla~ll 784 (1832)
+...+.+++.+.|+. |++.+.. ....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344667777788874 6666533 233344567799999999999997654
No 401
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=48.97 E-value=8.7 Score=42.10 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.|+-++++||+|||||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 35668999999999998543
No 402
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=48.77 E-value=8.9 Score=41.63 Aligned_cols=21 Identities=24% Similarity=0.036 Sum_probs=17.3
Q ss_pred cCCcEEEEecCCChHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ll 784 (1832)
.++.++++|++|||||+++-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 466799999999999996543
No 403
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.46 E-value=8.7 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=20.4
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667778887 777899999999863
No 404
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.44 E-value=9 Score=45.72 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=20.7
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5667788888 677899999999874
No 405
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=48.43 E-value=11 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4456678887 778899999999863
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=48.38 E-value=23 Score=41.51 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP 1488 (1832)
.|.=+++.|++|+|||..++-.+..... .+..++|+.-
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~------------~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD------------NDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT------------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH------------cCCeEEEEEC
Confidence 3455899999999999754443333221 2356787764
No 407
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=48.37 E-value=17 Score=38.91 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHcCC--cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHH
Q psy6409 751 PTPIQRQAIPIGLQNR--DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821 (1832)
Q Consensus 751 pt~iQ~~ai~~il~gr--dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi 821 (1832)
..+-|..++..++..+ -.++.++-|++||...+--++..- ...|..+.+|+|+..-+...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-----------~~~Gr~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-----------REQGREVQIIAADRRSQMNM 96 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-----------HHTTCCEEEECSTTHHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-----------HhcCeEEEEEcCchHHHHHH
Confidence 4567899999998654 478889999999988544333211 23688999999998766553
No 408
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=48.27 E-value=6.9 Score=44.50 Aligned_cols=16 Identities=31% Similarity=0.123 Sum_probs=13.7
Q ss_pred EEEEecCCChHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFL 783 (1832)
Q Consensus 768 vIv~apTGSGKTla~l 783 (1832)
++++||||||||..+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 7899999999998543
No 409
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=48.16 E-value=28 Score=40.81 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=16.7
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.-++++|++|+|||..++--+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4558999999999997544433
No 410
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=48.00 E-value=11 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHcCCc--EEEEecCCChHHHH
Q psy6409 759 IPIGLQNRD--IIGVAETGSGKTLA 781 (1832)
Q Consensus 759 i~~il~grd--vIv~apTGSGKTla 781 (1832)
+..++.|.| ++..|+||||||..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceE
Confidence 445667877 77889999999986
No 411
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=47.73 E-value=26 Score=39.96 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCCcHHHH-HHHHHHHcCC-----cEEEEecCCChHHHHHH
Q psy6409 738 EILEIIEKIGYAEPTPIQR-QAIPIGLQNR-----DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 738 ~l~~~l~~~g~~~pt~iQ~-~ai~~il~gr-----dvIv~apTGSGKTla~l 783 (1832)
.+.+.|+-.||. |++- .++...+.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 888999888875 6664 3355666653 39999999999998665
No 412
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=47.70 E-value=16 Score=40.71 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHHHHHHHHHHHHh
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreLa~Qi~~~~~~~ 1503 (1832)
.|.-+++.+|+|+|||..+.-.+...+. .+..++|+.-. .-..++...+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~------------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK------------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH------------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh------------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 4567899999999999865433332221 24457776643 2235555555544
No 413
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=47.65 E-value=11 Score=45.19 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4456678887 788899999999863
No 414
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=47.62 E-value=9.6 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLA 781 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla 781 (1832)
.+..++.|.| ++..|.||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 3445677887 77889999999985
No 415
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=47.54 E-value=19 Score=40.65 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=28.5
Q ss_pred ccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHHcCCcEEEEecCCChHHHHHH
Q psy6409 727 VRNWKEASLPTEILEIIEKIG--YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 727 ~~~f~~~~L~~~l~~~l~~~g--~~~pt~iQ~~ai~~il~grdvIv~apTGSGKTla~l 783 (1832)
-..|+++.-.+.+++.+.+.- +..|..++.-. ....+.++++||+|+|||..+-
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 357887766666665554310 11111111000 0113569999999999998543
No 416
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=47.48 E-value=7.3 Score=44.81 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=31.2
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQ-RQAIPIG--LQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ-~~ai~~i--l~g~dvii~ApTGSGKTla~ 1457 (1832)
|-..|+++.-.+..++.|..+-. .+.+ .+.+..+ ..++++++.+|+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568887666666666654210 0000 1111111 24578999999999999865
No 417
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.33 E-value=9.3 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=18.0
Q ss_pred HHHcCCcEEEEecCCChHHHHH
Q psy6409 761 IGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 761 ~il~grdvIv~apTGSGKTla~ 782 (1832)
.+..+.++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999854
No 418
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=47.10 E-value=9.3 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.1
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..+++|.| ++..|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4566678887 778899999999864
No 419
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.05 E-value=9.9 Score=41.34 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.4
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.|+-++++||+|||||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36679999999999998543
No 420
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.97 E-value=11 Score=45.81 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=20.8
Q ss_pred HHHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 757 QAIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 757 ~ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
..+..++.|.| ++..|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677778887 777899999999863
No 421
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=46.90 E-value=6.2 Score=41.72 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
..+++++||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 422
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.81 E-value=7.8 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-++++|+.|||||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999996543
No 423
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=46.75 E-value=6.1 Score=42.07 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=17.4
Q ss_pred cCCcEEEEecCCChHHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ll 784 (1832)
.++.++++|+.|||||.+.-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999996543
No 424
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=46.56 E-value=11 Score=45.42 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|.||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4556678887 778899999999874
No 425
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.54 E-value=15 Score=44.53 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL 1492 (1832)
.+.++++++|||||||...-.-+.... ..+..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY------------MQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH------------HCCCEEEEEeCCcCH
Confidence 457899999999999986544333322 135668888886553
No 426
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.53 E-value=7.8 Score=40.48 Aligned_cols=17 Identities=29% Similarity=0.171 Sum_probs=14.3
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
-++++|++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998654
No 427
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=46.33 E-value=26 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
..+++++||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999998643
No 428
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=45.58 E-value=11 Score=46.34 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.8
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| |+..|.||||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4555678887 788899999999864
No 429
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=45.28 E-value=10 Score=41.32 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4667899999999999853
No 430
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=45.26 E-value=9.2 Score=41.71 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
|+-++++||||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4558999999999987543
No 431
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=44.97 E-value=21 Score=45.00 Aligned_cols=40 Identities=23% Similarity=0.038 Sum_probs=26.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHH-HhcCCcEEEEcCCCchHHHHH
Q psy6409 1416 EIIEKIGYAEPTPIQRQAIPI-GLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1416 ~~l~~~g~~~ptpiQ~~ai~~-il~g~dvii~ApTGSGKTla~ 1457 (1832)
..|..+|. +++.+..-+.. +-.|.++++++|||||||...
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34445553 34444444443 346788999999999999753
No 432
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=44.93 E-value=9.2 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 759 IPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 759 i~~il~grd--vIv~apTGSGKTla~ 782 (1832)
+..++.|.| ++..|+||||||...
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345667887 777899999999863
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=44.84 E-value=10 Score=44.76 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.4
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
.++++||||||||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998543
No 434
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=44.78 E-value=9.9 Score=41.09 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.1
Q ss_pred CcEEEEecCCChHHHH
Q psy6409 766 RDIIGVAETGSGKTLA 781 (1832)
Q Consensus 766 rdvIv~apTGSGKTla 781 (1832)
|-+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999984
No 435
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=44.71 E-value=16 Score=43.70 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.+.-+++++|||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4456899999999999753
No 436
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=44.41 E-value=31 Score=40.92 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcCcHHH-HHHHHHHHHHh
Q psy6409 1440 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL-AQQIEEETNKF 1503 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaPtreL-a~Qi~~~~~~~ 1503 (1832)
|.-+++.+|+|||||..++-.+.... .|.. ....+..++|+.-...+ ..++...+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~--~~~~----~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQ--LPGA----GGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTT--SCBT----TTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh--cccc----cCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 45689999999999986544333211 1110 01135578888764321 23444444444
No 437
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=44.12 E-value=12 Score=43.76 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=16.6
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.+.+++++||||+|||.++-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35679999999999998643
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.73 E-value=45 Score=41.76 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhCchhhcccccCCCcEEEEEcC---cHHHHHHHHHHHHHhcCCCCCeEEEEECCcc
Q psy6409 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP---TRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~lpil~~l~~~p~~~~~~~~~~~~~vLiLaP---treLa~Qi~~~~~~~~~~~g~~v~~l~gg~~ 1519 (1832)
+++++++|+|||..+.-.+..+... |.+++++.. .-....|........ ++.+.....+..
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~------------G~kVllVd~D~~r~aa~~qL~~~~~~~----~i~v~~~~~~~d 167 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRK------------GWKTCLICADTFRAGAFDQLKQNATKA----RIPFYGSYTEMD 167 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT------------TCCEEEEEECCSSSHHHHHHHHHHHHH----TCCEEECCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC------------CCeEEEEeccccchhHHHHHHHHhhcc----CceEEccCCCCC
Q ss_pred h----HHHHHHhh-cCCcEEEe-CHHHH-------HHHHHccccccCCceeEEEc
Q psy6409 1520 R----EEQGFRLR-LGCEIVIA-TPGRL-------IDVLENRYLVLNQCTYIVLD 1561 (1832)
Q Consensus 1520 ~----~~~~~~l~-~~~~IiVa-TP~rl-------~~~l~~~~~~l~~v~llViD 1561 (1832)
+ ......+. .+++++|. ||+++ ..+..-......+.-++|+|
T Consensus 168 p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvD 222 (504)
T 2j37_W 168 PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMD 222 (504)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEe
No 439
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=43.64 E-value=33 Score=42.16 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=16.2
Q ss_pred CcEEEEecCCChHHHHHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~llpi 786 (1832)
+.+++++++|+|||++..--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357888999999998755444
No 440
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=43.47 E-value=51 Score=40.46 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLLPL 1461 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~lpi 1461 (1832)
+.+++++++|+|||....--+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457788999999998654433
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=43.46 E-value=7.1 Score=45.63 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=31.2
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhcCCcEEEEcCCCchHHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQR-QAIPI--GLQNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~-~ai~~--il~g~dvii~ApTGSGKTla~~ 1458 (1832)
|-.+|+++.-...+.+.|...-- .|... +.+.. +..++.+++.+|+|+|||..+-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 44578888666666665554200 00000 01111 1235789999999999998653
No 442
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=43.39 E-value=13 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=18.9
Q ss_pred HHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1435 PIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1435 ~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
..+..+.++++.+|+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34456789999999999999865
No 443
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=43.15 E-value=33 Score=39.13 Aligned_cols=43 Identities=23% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCCCCcHHHHH-HHHHHhcCC-----cEEEEcCCCchHHHHHH
Q psy6409 1413 EILEIIEKIGYAEPTPIQRQ-AIPIGLQNR-----DIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1413 ~ll~~l~~~g~~~ptpiQ~~-ai~~il~g~-----dvii~ApTGSGKTla~~ 1458 (1832)
.+.+.|+-.||. |++-. ++..++.++ .+++.+|.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888874 55533 345555543 49999999999998764
No 444
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.07 E-value=11 Score=41.13 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.1
Q ss_pred HcCCcEEEEecCCChHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~l 783 (1832)
..|+-++++||+|||||...-
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356779999999999998543
No 445
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.97 E-value=24 Score=42.16 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~ 1458 (1832)
.+.++++.+|+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999999763
No 446
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=42.79 E-value=12 Score=40.63 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=16.9
Q ss_pred HcCCcEEEEecCCChHHHHHH
Q psy6409 763 LQNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 763 l~grdvIv~apTGSGKTla~l 783 (1832)
..|.-++++||+|||||+.+-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778999999999998543
No 447
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=42.73 E-value=12 Score=45.19 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.1
Q ss_pred HHHHHHcCCc--EEEEecCCChHHHHH
Q psy6409 758 AIPIGLQNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 758 ai~~il~grd--vIv~apTGSGKTla~ 782 (1832)
.+..++.|.| ++..|.||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5666778887 777899999999863
No 448
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=42.60 E-value=11 Score=39.55 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=15.8
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++||.|||||+.+-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998543
No 449
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=42.58 E-value=11 Score=44.56 Aligned_cols=17 Identities=41% Similarity=0.305 Sum_probs=14.3
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
-++|+||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998643
No 450
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=42.43 E-value=9.3 Score=40.90 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|.-++++||.|||||+.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999853
No 451
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.14 E-value=6.9 Score=44.26 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=30.3
Q ss_pred CcccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHH-c-CCcEEEEecCCChHHHHH
Q psy6409 725 DPVRNWKEASLPTEILEIIEKIG--YAEPTPIQRQAIPIGL-Q-NRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 725 ~p~~~f~~~~L~~~l~~~l~~~g--~~~pt~iQ~~ai~~il-~-grdvIv~apTGSGKTla~ 782 (1832)
.|-.+|+++.-.+.....++..- |.. ..++..+- . .+.++++||+|+|||..+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34567888766666655554321 111 12222211 1 244999999999999853
No 452
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=42.07 E-value=4.8 Score=46.48 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=26.3
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHH--cCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQ-RQAIPIGL--QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g~~~pt~iQ-~~ai~~il--~grdvIv~apTGSGKTla~ 782 (1832)
|-.+|++.+-.+.+.+.|.+.=. .|+. ..++..+- -.+.++++||.|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 44578888766677766654210 1111 11222211 1234999999999999843
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=41.91 E-value=10 Score=45.92 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.6
Q ss_pred EEEEecCCChHHHHHH
Q psy6409 768 IIGVAETGSGKTLAFL 783 (1832)
Q Consensus 768 vIv~apTGSGKTla~l 783 (1832)
++|+||||||||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 7889999999998543
No 454
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=41.73 E-value=11 Score=40.24 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.9
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+.-++++|+.|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999998643
No 455
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=41.69 E-value=25 Score=49.29 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=42.1
Q ss_pred cEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHh
Q psy6409 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828 (1832)
Q Consensus 767 dvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~ 828 (1832)
..+|.|.-|||||.+-.--++..|..............-..+|+|.=|+..|.++..++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 35999999999999876666665542110000001122347999999999999999888765
No 456
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=41.69 E-value=11 Score=45.62 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=16.0
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|..++++||||||||+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999853
No 457
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.66 E-value=13 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|.-+.++||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4666889999999999854
No 458
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=41.51 E-value=14 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.2
Q ss_pred CcEEEEecCCChHHHHH
Q psy6409 766 RDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 766 rdvIv~apTGSGKTla~ 782 (1832)
+-+.++||+|||||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999843
No 459
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.41 E-value=63 Score=37.45 Aligned_cols=20 Identities=30% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
++-+++++++|+|||..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34477889999999986544
No 460
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=41.37 E-value=15 Score=41.68 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.+.++++.+|+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999865
No 461
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=41.24 E-value=65 Score=39.38 Aligned_cols=20 Identities=30% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~l 1459 (1832)
+.-+++++++|+|||.....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577889999999986544
No 462
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=40.96 E-value=11 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.2
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
+..++++|+.|||||.+.-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999999654
No 463
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=40.15 E-value=14 Score=46.31 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1429 IQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1429 iQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
.=..++..+..+.++++.+|+|+|||..+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 33445556678899999999999999865
No 464
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=39.85 E-value=64 Score=38.36 Aligned_cols=19 Identities=5% Similarity=0.242 Sum_probs=16.2
Q ss_pred CcceEEEEcccchhhcCCC
Q psy6409 137 NQCTYIVLDEADRMIDMGF 155 (1832)
Q Consensus 137 ~~~~~~vlDEad~~l~~gf 155 (1832)
.+.++|||||.-.++|..|
T Consensus 230 ~~~~llIlDs~ta~ld~~~ 248 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEY 248 (349)
T ss_dssp SCEEEEEEETSSTTHHHHC
T ss_pred CCCCEEEEeCchHhhhhhh
Confidence 6799999999998887654
No 465
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=39.60 E-value=10 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~ 1458 (1832)
..++++.+|+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998653
No 466
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=39.60 E-value=16 Score=40.34 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.1
Q ss_pred cCCcEEEEecCCChHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~ 782 (1832)
.|+-+.++||+|||||...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677999999999999843
No 467
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.55 E-value=19 Score=54.54 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHH----HHcCCcEEEEecCCChHHHHHHH
Q psy6409 735 LPTEILEIIEKIGYAEPTPIQRQAIPI----GLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 735 L~~~l~~~l~~~g~~~pt~iQ~~ai~~----il~grdvIv~apTGSGKTla~ll 784 (1832)
|...+.+++.+.|+ .|++.+..=+-. +....-++++||||||||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34566777778887 566665533322 23345699999999999998654
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=39.22 E-value=14 Score=43.82 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q psy6409 1441 RDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1441 ~dvii~ApTGSGKTla~~l 1459 (1832)
+-+++++|||||||..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999987543
No 469
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=39.08 E-value=12 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.2
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
-++++|+.|||||..+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37899999999998643
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=38.92 E-value=12 Score=44.70 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
++.+++.||+|+|||..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999998654
No 471
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.72 E-value=30 Score=38.95 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~ 1457 (1832)
.+.+++.+|+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 357999999999999865
No 472
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.61 E-value=12 Score=38.98 Aligned_cols=18 Identities=17% Similarity=-0.210 Sum_probs=14.8
Q ss_pred cEEEEecCCChHHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 767 dvIv~apTGSGKTla~ll 784 (1832)
.++++|+.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999996543
No 473
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.51 E-value=21 Score=54.11 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHH
Q psy6409 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGL----QNRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1410 L~~~ll~~l~~~g~~~ptpiQ~~ai~~il----~g~dvii~ApTGSGKTla~~l 1459 (1832)
|...+.+.+.+.|+ .|+|.+..=+-.++ ....+++++|||||||.|+-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 45666677778888 67777765444433 456799999999999998754
No 474
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=38.44 E-value=39 Score=38.85 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~~ 1458 (1832)
.+.++++.+|+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998653
No 475
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=38.28 E-value=24 Score=39.29 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.8
Q ss_pred CCcEEEEecCCChHHHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPL 786 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpi 786 (1832)
|.-+++.|++|+|||..++--+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999997554433
No 476
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=38.21 E-value=29 Score=40.68 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=31.0
Q ss_pred CcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCcEEEEcCCCchHHHHH
Q psy6409 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-----QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1401 p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il-----~g~dvii~ApTGSGKTla~ 1457 (1832)
|-..|+++.-...+.+.|..+-. .|. ..|.++ ..+++++.+|+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34568888766777776654210 000 001111 2357999999999999865
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=37.69 E-value=13 Score=38.35 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.8
Q ss_pred EEEEecCCChHHHH
Q psy6409 768 IIGVAETGSGKTLA 781 (1832)
Q Consensus 768 vIv~apTGSGKTla 781 (1832)
.+++||+|||||.+
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999985
No 478
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=37.68 E-value=14 Score=40.10 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=16.4
Q ss_pred cCCcEEEEecCCChHHHHHH
Q psy6409 764 QNRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 764 ~grdvIv~apTGSGKTla~l 783 (1832)
.|.-++++||.|||||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35679999999999998543
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=37.50 E-value=13 Score=43.42 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q psy6409 1443 IIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1443 vii~ApTGSGKTla~~l 1459 (1832)
+++++|||||||..+.-
T Consensus 13 i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 13 IFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCccCHHHHHHH
Confidence 67899999999986533
No 480
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=37.47 E-value=18 Score=43.43 Aligned_cols=21 Identities=43% Similarity=0.428 Sum_probs=17.8
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q psy6409 1437 GLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1437 il~g~dvii~ApTGSGKTla~ 1457 (1832)
+..|..+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 347889999999999999853
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.24 E-value=15 Score=42.93 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q psy6409 1442 DIIGVAETGSGKTLAFL 1458 (1832)
Q Consensus 1442 dvii~ApTGSGKTla~~ 1458 (1832)
-+++++|||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46789999999998653
No 482
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=36.75 E-value=17 Score=38.77 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q psy6409 1439 QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1439 ~g~dvii~ApTGSGKTla~ 1457 (1832)
.|+=+++++|+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666899999999999864
No 483
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=36.73 E-value=36 Score=37.24 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred hcccCHHHHHHHHhcccceecCCCCCCCcCCcccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CcEEEEcCC
Q psy6409 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN----RDIIGVAET 1449 (1832)
Q Consensus 1374 ~~~~~~~~~~~~~~~~~i~~~~~~~p~p~~~~~e~~L~~~ll~~l~~~g~~~ptpiQ~~ai~~il~g----~dvii~ApT 1449 (1832)
+.+|+-.+|...+=+. +.+. .+| ..+.+.|+-.|+ .|... ..++..++.+ +.+++.+|.
T Consensus 5 ~~~m~~~~~i~~~~~~---~~~~------~~w------~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPP 67 (212)
T 1tue_A 5 GSGSNMSQWIRFRCSK---IDEG------GDW------RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPA 67 (212)
T ss_dssp -CCSCHHHHHHHHHHT---SCSC------CCS------HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCG
T ss_pred HHhcCHHHHHHHHHHH---ccCC------CCH------HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCC
Confidence 4578888887643210 1111 133 366777775554 44444 4555666655 359999999
Q ss_pred CchHHHHH
Q psy6409 1450 GSGKTLAF 1457 (1832)
Q Consensus 1450 GSGKTla~ 1457 (1832)
|+|||..+
T Consensus 68 GtGKTt~a 75 (212)
T 1tue_A 68 NTGKSYFG 75 (212)
T ss_dssp GGCHHHHH
T ss_pred CCCHHHHH
Confidence 99999764
No 484
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=36.63 E-value=20 Score=42.94 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.8
Q ss_pred cCCc--EEEEecCCChHHHHH
Q psy6409 764 QNRD--IIGVAETGSGKTLAF 782 (1832)
Q Consensus 764 ~grd--vIv~apTGSGKTla~ 782 (1832)
.|.| ++..|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 3776 689999999999863
No 485
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=36.51 E-value=25 Score=38.52 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q psy6409 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1426 ptpiQ~~ai~~il~g~dvii~ApTGSGKTla~ 1457 (1832)
-+.-|..++..+..|.-+.+++|.|||||..+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456778888888888999999999999854
No 486
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=36.46 E-value=25 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=18.7
Q ss_pred HHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q psy6409 1430 QRQAIPIGL--QNRDIIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1430 Q~~ai~~il--~g~dvii~ApTGSGKTla~ 1457 (1832)
+..++..++ .|.-+++++|||||||...
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 334444444 3345889999999999853
No 487
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=36.24 E-value=18 Score=39.36 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=16.5
Q ss_pred HHHcCCcEEEEecCCChHHHHH
Q psy6409 761 IGLQNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 761 ~il~grdvIv~apTGSGKTla~ 782 (1832)
.+..|.-+.++||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4556777999999999999843
No 488
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.22 E-value=13 Score=39.29 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.6
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
|.-+.++||.|||||+.+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4558899999999998554
No 489
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=36.16 E-value=16 Score=42.39 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.9
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
.++++||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 69999999999998654
No 490
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=36.03 E-value=20 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q psy6409 1433 AIPIGLQNRD--IIGVAETGSGKTLAF 1457 (1832)
Q Consensus 1433 ai~~il~g~d--vii~ApTGSGKTla~ 1457 (1832)
.+..++.|.| ++..+.||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556778988 667789999999864
No 491
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=36.03 E-value=21 Score=40.48 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHcCCcEEEEecCCChHHHHHHH
Q psy6409 762 GLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 762 il~grdvIv~apTGSGKTla~ll 784 (1832)
.+.|..++++|+.|||||.++-+
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 34588999999999999996543
No 492
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=35.84 E-value=13 Score=39.08 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
|..++++|+.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568999999999998543
No 493
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=35.78 E-value=19 Score=39.27 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHcCCcEEEEecCCChHHHHHHH
Q psy6409 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 752 t~iQ~~ai~~il~grdvIv~apTGSGKTla~ll 784 (1832)
++.++.. ..+..|..++++|+.|||||..+-.
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHH
Confidence 3444444 2344567789999999999986543
No 494
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.52 E-value=12 Score=39.86 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCcEEEEecCCChHHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFLL 784 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~ll 784 (1832)
|..++++|+.|||||+.+-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 495
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=35.51 E-value=10 Score=43.58 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=30.2
Q ss_pred cccCcccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHH--cCCcEEEEecCCChHHHHH
Q psy6409 726 PVRNWKEASLPTEILEIIEKIG--YAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAF 782 (1832)
Q Consensus 726 p~~~f~~~~L~~~l~~~l~~~g--~~~pt~iQ~~ai~~il--~grdvIv~apTGSGKTla~ 782 (1832)
|-.+|+++...+.+...++..- |.. ..++..+- -.+.++++||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4467888776666666555421 111 11222211 1234999999999999853
No 496
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=35.49 E-value=23 Score=38.69 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=14.5
Q ss_pred cEEEEecCCChHHHHHH
Q psy6409 767 DIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 767 dvIv~apTGSGKTla~l 783 (1832)
.+++.||+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998543
No 497
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=35.30 E-value=15 Score=38.91 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q psy6409 1440 NRDIIGVAETGSGKTLAFLL 1459 (1832)
Q Consensus 1440 g~dvii~ApTGSGKTla~~l 1459 (1832)
++.+++++++|||||..+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.19 E-value=16 Score=44.05 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=16.1
Q ss_pred CCcEEEEecCCChHHHHHH
Q psy6409 765 NRDIIGVAETGSGKTLAFL 783 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~l 783 (1832)
..+++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998654
No 499
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=35.16 E-value=32 Score=49.25 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=55.2
Q ss_pred CCcEEEEecCCChHHHHHHHHHHHHHhhchhhhhccccCCCcEEEEEccchhHHHHHHHHHHHhcCCCCCeEEEEEcCCc
Q psy6409 765 NRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844 (1832)
Q Consensus 765 grdvIv~apTGSGKTla~llpil~~i~~~~~~~~~~~~~~~~~~LilaPtreLa~Qi~~~~~~~~~~~~i~v~~~~Gg~~ 844 (1832)
|+-+.+.+|.|||||+.++-.+-.. +..|..++|+.+-.+|.... +++++-.+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~------------~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~----------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA------------QREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH------------HHTTCCEEEECTTSCCCHHH---HHHTTCCGG-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH------------HhcCCeEEEEecCCCCCHHH---HHHcCCCHH-----------
Confidence 4679999999999999755444321 23577899999988877664 555432211
Q ss_pred hHHHHHHHhcCCceeecCHHHH---HHHHHccccccCCceeEEEecchhhh
Q psy6409 845 REEQGFRLRLGCEIVIATPGRL---IDVLENRYLVLNQCTYIVLDEADRMI 892 (1832)
Q Consensus 845 ~~~~~~~l~~~~~IlV~TP~rL---~d~l~~~~~~l~~~~~lViDEaH~l~ 892 (1832)
+++|.-|..- +..+.. .+.-..+++||||.+--|.
T Consensus 1485 ------------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 ------------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ------------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCC
T ss_pred ------------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCC
Confidence 1445555322 222211 1233568899999998655
No 500
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=35.10 E-value=15 Score=43.69 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhhcccccCCCcEEEEe--cCCCcchhH
Q psy6409 15 RQAIPIGLQNRDIIGVA--ETGSGKTLA 40 (1832)
Q Consensus 15 ~~~ip~~l~g~d~~~~a--~TGsGKTla 40 (1832)
...|..++.|-++.+.| +||||||.+
T Consensus 74 ~~lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 74 GQLVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHHHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHHhcCCceeEEEEECCCCCCCcEe
Done!