Your job contains 1 sequence.
>psy6409
IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED
ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA
TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED
ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK
YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV
LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL
MAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERERE
KRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGA
AAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKR
QEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR
VRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEM
LEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKG
GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTL
AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV
GGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDV
QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP
ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL
EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS
IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTK
DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRSPARKRRSRSR
DRDYDRRFKRKKSPQCEAQSSRFSACSLPRSHKSSSLLSRYSEQDPEEKELNKDKEREGE
AIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGID
IKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTER
DWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN
RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET
NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL
DEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM
PPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVII
FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID
IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS
TCPPELLNHPDAQHKPGTVMVPKKRREEKIFA
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6409
(1832 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 2402 9.8e-259 3
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 2259 8.7e-243 3
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 2240 3.0e-238 2
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 2240 3.0e-238 2
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 2240 3.0e-238 2
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 2240 3.0e-238 2
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 1995 1.9e-217 3
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 1348 6.8e-186 3
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 1540 5.6e-167 2
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 1492 1.2e-163 3
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 1304 5.4e-155 3
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 1304 5.4e-155 3
POMBASE|SPCC63.11 - symbol:prp28 "U5 snRNP-associated pro... 1311 4.9e-144 3
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 1309 9.1e-141 2
CGD|CAL0001091 - symbol:orf19.672 species:5476 "Candida a... 927 1.3e-96 3
UNIPROTKB|Q59W52 - symbol:PRP28 "Pre-mRNA-splicing ATP-de... 927 1.3e-96 3
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 548 3.3e-89 3
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 502 1.2e-82 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 460 2.6e-79 2
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 512 9.3e-79 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 446 8.1e-78 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 455 3.4e-77 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 453 3.4e-77 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 746 2.6e-76 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 456 3.0e-76 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 484 2.3e-75 2
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 493 6.3e-75 2
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 734 1.4e-74 2
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 450 5.4e-74 3
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 450 5.4e-74 3
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 732 9.6e-74 2
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 412 1.3e-73 2
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 450 1.7e-73 2
SGD|S000002651 - symbol:PRP28 "RNA helicase in the DEAD-b... 703 6.6e-73 3
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 453 2.8e-72 2
GENEDB_PFALCIPARUM|PF08_0096 - symbol:PF08_0096 "RNA heli... 701 5.4e-72 2
UNIPROTKB|Q8IAU1 - symbol:PF08_0096 "RNA helicase, putati... 701 5.4e-72 2
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 396 7.8e-72 2
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 418 8.7e-72 2
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 416 1.5e-71 2
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 415 1.9e-71 2
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 414 2.7e-71 2
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 413 3.7e-71 2
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 413 3.7e-71 2
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 413 6.2e-71 2
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 413 1.7e-70 3
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 420 3.1e-70 3
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 672 3.4e-70 3
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 413 5.0e-70 3
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 425 5.7e-70 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 431 6.8e-70 2
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 401 7.3e-70 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 464 8.5e-70 3
ZFIN|ZDB-GENE-030131-1927 - symbol:ddx41 "DEAD (Asp-Glu-A... 396 1.2e-69 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 456 1.4e-69 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 395 4.2e-69 4
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 699 1.0e-68 2
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 699 1.0e-68 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 446 1.3e-68 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 446 1.3e-68 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 446 1.3e-68 2
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 430 2.6e-68 2
UNIPROTKB|G3X7G8 - symbol:DDX59 "Uncharacterized protein"... 392 2.7e-68 2
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 436 2.8e-68 2
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 436 2.8e-68 2
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 436 2.8e-68 2
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 436 2.8e-68 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 408 3.6e-68 4
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 388 5.6e-68 2
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 434 5.9e-68 2
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 434 6.3e-68 2
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 436 7.3e-68 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 388 8.1e-68 2
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 446 9.5e-68 2
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 446 9.8e-68 2
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 423 1.0e-67 2
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 446 1.1e-67 2
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 446 1.1e-67 2
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 388 1.4e-67 2
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 446 2.0e-67 2
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 388 2.1e-67 2
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 388 2.2e-67 2
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 388 2.2e-67 2
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 393 2.3e-67 2
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 429 3.3e-67 2
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 436 4.4e-67 3
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 384 4.7e-67 2
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 384 4.7e-67 2
MGI|MGI:1915247 - symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) bo... 384 4.9e-67 2
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 390 5.4e-67 2
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 387 5.8e-67 2
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 387 5.8e-67 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 390 6.5e-67 2
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 386 9.5e-67 2
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 388 1.0e-66 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 408 1.1e-66 3
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 383 1.1e-66 3
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 392 1.1e-66 2
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 386 1.3e-66 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 374 1.5e-66 2
WARNING: Descriptions of 874 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 2402 (850.6 bits), Expect = 4.0e-254, Sum P(2) = 4.0e-254
Identities = 460/589 (78%), Positives = 507/589 (86%)
Query: 1245 DPEEKEL-NKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIYK 1303
D ++L +KDKE+E EAI+E FDWDA EDTS+DYN++YK
Sbjct: 235 DKRAEDLTHKDKEKELEAIRERYLGIIKKKRRVRRLNDRKFVFDWDAGEDTSIDYNNLYK 294
Query: 1304 ERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXXX 1363
ERH VQFFGRGN+AGIDIK QKR QSKFYG++LEKRRTEA
Sbjct: 295 ERHHVQFFGRGNVAGIDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDKQK 354
Query: 1364 WDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGY 1423
WDDRHW+EK DEMTERDWRIFREDY++TIKGG++P+P+R+W E+ P EI++II+K+GY
Sbjct: 355 WDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGY 414
Query: 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483
EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL WIQSLPKI R+ED DQGPYA
Sbjct: 415 KEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYA 474
Query: 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
IIMAPTRELAQQIEEET KFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIATPGRLID
Sbjct: 475 IIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLID 534
Query: 1544 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603
VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AEDE KL+ N
Sbjct: 535 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMEN 594
Query: 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR 1663
+ +KKKYRQTVMFTATMPPAVERLAR+YLRRPATVYIGSVGKPTER EQIVY++ E DKR
Sbjct: 595 FYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKR 654
Query: 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723
KKLME+L+R + PVIIFVNQKKGADVLAKGLEKLGYN+CTLHGGKGQEQRE AL +LK
Sbjct: 655 KKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKS 714
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G+KDILVATDVAGRGIDIKDVS+VINYDMAK+IEDYTHRIGRTGRAGK G A+SF TKDD
Sbjct: 715 GAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDD 774
Query: 1784 SHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
S LFYDLKQ + +SPVSTCPPEL+NHP+AQHKPGTV V KKRREEKIFA
Sbjct: 775 SALFYDLKQCVSASPVSTCPPELMNHPEAQHKPGTV-VTKKRREEKIFA 822
Score = 2226 (788.7 bits), Expect = 9.8e-259, Sum P(3) = 9.8e-259
Identities = 425/544 (78%), Positives = 468/544 (86%)
Query: 582 REGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIYKERHQVQFFGRGNI 641
+E EAI+E FDWDA EDTS+DYN++YKERH VQFFGRGN+
Sbjct: 248 KELEAIRERYLGIIKKKRRVRRLNDRKFVFDWDAGEDTSIDYNNLYKERHHVQFFGRGNV 307
Query: 642 AGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXXXWDDRHWTEKSLDE 701
AGIDIK QKR QSKFYG++LEKRRTEA WDDRHW+EK DE
Sbjct: 308 AGIDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKEDKQKWDDRHWSEKENDE 367
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
MTERDWRIFREDY++TIKGG++P+P+R+W E+ P EI++II+K+GY EPTPIQRQAIPI
Sbjct: 368 MTERDWRIFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPI 427
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
GLQNRDIIGVAETGSGKTLAFL+PLL WIQSLPKI R+ED DQGPYAIIMAPTRELAQQI
Sbjct: 428 GLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQI 487
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
EEET KFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT
Sbjct: 488 EEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 547
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AEDE KL+ N+ +KKKYRQTVMF
Sbjct: 548 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMF 607
Query: 942 TATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1001
TATMPPAVERLAR+YLRRPATVYIGSVGKPTER EQIVY++ E DKRKKLME+L+R +
Sbjct: 608 TATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDP 667
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
PVIIFVNQKKGADVLAKGLEKLGYN+CTLHGGKGQEQRE AL +LK G+KDILVATDVAG
Sbjct: 668 PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVAG 727
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1121
RGIDIKDVS+VINYDMAK+IEDYTHRIGRTGRAGK G A+SF TKDDS LFYDLKQ + +
Sbjct: 728 RGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSA 787
Query: 1122 SPVT 1125
SPV+
Sbjct: 788 SPVS 791
Score = 983 (351.1 bits), Expect = 2.3e-120, Sum P(2) = 2.3e-120
Identities = 200/264 (75%), Positives = 220/264 (83%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
II+K+GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL+PLL WIQSLPKI R+ED
Sbjct: 408 IIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLED 467
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
DQGPYAIIMAPTRELAQQIEEET KFG PLGIRTV+VVGGLSREEQGFRLRLGCEIVIA
Sbjct: 468 VDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEIVIA 527
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE+AED
Sbjct: 528 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAED 587
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPA--KILE-YM--PVT----NLKPDTEDAEDENKL 231
E KL+ N+ +KKKYRQTVMFTATMPPA ++ Y+ P T ++ TE E +
Sbjct: 588 ETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYM 647
Query: 232 LANYNSKKKYRQTVMFTATMPPAV 255
+ N K+K ++ PP +
Sbjct: 648 MGE-NDKRKKLMEILSRKIDPPVI 670
Score = 671 (241.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 129/155 (83%), Positives = 143/155 (92%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 267
KILEYMPVTNLKPDTE+AEDE KL+ N+ +KKKYRQTVMFTATMPPAVERLAR+YLRRPA
Sbjct: 568 KILEYMPVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPA 627
Query: 268 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
TVYIGSVGKPTER EQIVY++ E DKRKKLME+L+R + PVIIFVNQKKGADVLAKGLE
Sbjct: 628 TVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLE 687
Query: 328 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
KLGYN+CTLHGGKGQEQRE AL +LK G+KDIL+A
Sbjct: 688 KLGYNSCTLHGGKGQEQREYALAALKSGAKDILVA 722
Score = 237 (88.5 bits), Expect = 9.8e-259, Sum P(3) = 9.8e-259
Identities = 43/55 (78%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G A+SF TKDDS LFYDLKQ + +SPVSTCPPEL+NHP+AQHKPGTV+
Sbjct: 757 TGRAGKTGCAISFVTKDDSALFYDLKQCVSASPVSTCPPELMNHPEAQHKPGTVV 811
Score = 68 (29.0 bits), Expect = 9.8e-259, Sum P(3) = 9.8e-259
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 508 FLTKEERAAEALRKRQAEV 526
FLTKE+RA EA+++RQ EV
Sbjct: 150 FLTKEQRALEAIKRRQEEV 168
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 2259 (800.3 bits), Expect = 2.1e-239, Sum P(3) = 2.1e-239
Identities = 430/593 (72%), Positives = 492/593 (82%)
Query: 1243 EQDPEEKELN--KDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNS 1300
+ D E +++ KDK +E AIKE F+WDASEDTS+DYN
Sbjct: 216 DDDDERQKIREEKDKGKELVAIKERYLGGMKKRRRTRHLNDRKFVFEWDASEDTSIDYNP 275
Query: 1301 IYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXX 1360
IYKE+HQV +GRG IAGID+K QKRDQS+FYG+++EKRRT
Sbjct: 276 IYKEKHQVHLYGRGFIAGIDLKQQKRDQSRFYGDLMEKRRTNEEKEQEEQRLKKVRKKEA 335
Query: 1361 XXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+RNWKE SLP ILE+IEK
Sbjct: 336 KQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEK 395
Query: 1421 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480
GY +PTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+ED+DQG
Sbjct: 396 CGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQG 455
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540
PYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGR
Sbjct: 456 PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGR 515
Query: 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 1600
LIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILEY+PVTN KPDT+DAED K+
Sbjct: 516 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAEDPEKM 575
Query: 1601 LANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 1659
+ N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V ++SE
Sbjct: 576 MQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSE 635
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALN 1719
+KRKKL+EVL G + P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL+
Sbjct: 636 GEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALS 695
Query: 1720 SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779
+LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F
Sbjct: 696 NLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFL 755
Query: 1780 TKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
TK+DS +FYDLKQ ++ SPVSTCPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 756 TKEDSSVFYDLKQAILESPVSTCPPELANHPDAQHKPGTILT-KKRREETIFA 807
Score = 2096 (742.9 bits), Expect = 8.7e-243, Sum P(3) = 8.7e-243
Identities = 393/516 (76%), Positives = 449/516 (87%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXX 670
F+WDASEDTS+DYN IYKE+HQV +GRG IAGID+K QKRDQS+FYG+++EKRRT
Sbjct: 261 FEWDASEDTSIDYNPIYKEKHQVHLYGRGFIAGIDLKQQKRDQSRFYGDLMEKRRTNEEK 320
Query: 671 XXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNW 730
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+RNW
Sbjct: 321 EQEEQRLKKVRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRNW 380
Query: 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 790
KE SLP ILE+IEK GY +PTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI
Sbjct: 381 KEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWI 440
Query: 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850
+LPKI R+ED+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGF
Sbjct: 441 TTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGF 500
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
RLR+GCEIVIATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILEY+PVT
Sbjct: 501 RLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVT 560
Query: 911 NLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG 969
N KPDT+DAED K++ N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS G
Sbjct: 561 NQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAG 620
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
KP ER+EQ V ++SE +KRKKL+EVL G + P+IIFVNQKKG DVLAK LEK+GYNACT
Sbjct: 621 KPHERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACT 680
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
LHGGKGQEQRE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIG
Sbjct: 681 LHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIG 740
Query: 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
RTGRAGK G+A++F TK+DS +FYDLKQ ++ SPV+
Sbjct: 741 RTGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVS 776
Score = 913 (326.5 bits), Expect = 3.1e-112, Sum P(2) = 3.1e-112
Identities = 174/208 (83%), Positives = 193/208 (92%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+IEK GY +PTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+ED
Sbjct: 392 VIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIED 451
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 452 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 511
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILEY+PVTN KPDT+DAED
Sbjct: 512 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAED 571
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMPPA 207
K++ N+ S K KYRQTVMFTATMPPA
Sbjct: 572 PEKMMQNFESGKHKYRQTVMFTATMPPA 599
Score = 608 (219.1 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 118/156 (75%), Positives = 135/156 (86%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRP 266
KILEY+PVTN KPDT+DAED K++ N+ S K KYRQTVMFTATMPPAVERLARSYLRRP
Sbjct: 552 KILEYIPVTNQKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRP 611
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
A VYIGS GKP ER+EQ V ++SE +KRKKL+EVL G + P+IIFVNQKKG DVLAK L
Sbjct: 612 AVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSL 671
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
EK+GYNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 672 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA 707
Score = 233 (87.1 bits), Expect = 8.7e-243, Sum P(3) = 8.7e-243
Identities = 40/55 (72%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G+A++F TK+DS +FYDLKQ ++ SPVSTCPPEL NHPDAQHKPGT++
Sbjct: 742 TGRAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPELANHPDAQHKPGTIL 796
Score = 51 (23.0 bits), Expect = 8.7e-243, Sum P(3) = 8.7e-243
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 508 FLTKEERAAEALRKRQ 523
FL+K ER AEA+++R+
Sbjct: 150 FLSKSEREAEAIKRRE 165
Score = 41 (19.5 bits), Expect = 3.9e-236, Sum P(2) = 3.9e-236
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 1243 EQDPEEKELNKDKEREGEAIK 1263
E + + K L+K ERE EAIK
Sbjct: 143 EAESKPKFLSKS-EREAEAIK 162
Score = 39 (18.8 bits), Expect = 6.3e-236, Sum P(2) = 6.3e-236
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 1248 EKELNKDKEREGEAIKE 1264
EK++ K++E E E K+
Sbjct: 108 EKDVKKEEEEEAEKKKD 124
Score = 38 (18.4 bits), Expect = 2.1e-239, Sum P(3) = 2.1e-239
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 194 EDPQERERRERRER 207
Score = 38 (18.4 bits), Expect = 1.2e-91, Sum P(2) = 1.2e-91
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 901 QKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
Q ILE PV+ P+ + D +KK+ +T+
Sbjct: 768 QAILE-SPVSTCPPELANHPDAQHKPGTILTKKRREETI 805
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 2240 (793.6 bits), Expect = 1.2e-234, Sum P(2) = 1.2e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 230 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 289
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 290 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 349
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 350 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 409
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 410 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 469
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 470 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 529
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 530 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 589
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 590 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 649
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 650 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 709
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 710 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 769
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 770 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 819
Score = 2094 (742.2 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 408/627 (65%), Positives = 481/627 (76%)
Query: 508 FLTKEERAAEALRKRQAEVXXXXXXXXXXXXXXQEFT-------KEASFESKRENFXXXX 560
FL+K ER AEAL++RQ EV ++F ++ +RE
Sbjct: 162 FLSKAEREAEALKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQERERRERRERME 221
Query: 561 XXXXXXXXXXXXXXXXXXXX-XREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDT 619
+E AIKE F+WDASEDT
Sbjct: 222 RETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT 281
Query: 620 SVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXX 679
S+DYN +YKERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 282 SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRK 341
Query: 680 XXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEI 739
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP I
Sbjct: 342 LRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHI 401
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799
LE+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+
Sbjct: 402 LEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 461
Query: 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
E++DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIV
Sbjct: 462 EESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIV 521
Query: 860 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 919
IATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++A
Sbjct: 522 IATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEA 581
Query: 920 EDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
ED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ
Sbjct: 582 EDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQK 641
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQ
Sbjct: 642 VFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 701
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
RE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G
Sbjct: 702 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 761
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+A++F TK+DS +FY+LKQ ++ SPV+
Sbjct: 762 VAITFLTKEDSAVFYELKQAILESPVS 788
Score = 907 (324.3 bits), Expect = 7.7e-111, Sum P(2) = 7.7e-111
Identities = 173/208 (83%), Positives = 194/208 (93%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E+
Sbjct: 404 VIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 463
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 464 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 523
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED
Sbjct: 524 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 583
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMPPA 207
K+LAN+ S K KYRQTVMFTATMPPA
Sbjct: 584 PEKMLANFESGKHKYRQTVMFTATMPPA 611
Score = 607 (218.7 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 116/156 (74%), Positives = 136/156 (87%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRP 266
KILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRP
Sbjct: 564 KILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRP 623
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
A VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK L
Sbjct: 624 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 683
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
EK+GYNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 684 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA 719
Score = 226 (84.6 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 754 TGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTIL 808
Score = 46 (21.3 bits), Expect = 1.2e-234, Sum P(2) = 1.2e-234
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 218 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKP 277
LK ++ E+ K+L K+K Q + P ER R R + G
Sbjct: 173 LKRRQQEVEERQKMLEEERKKRKQFQDLGRKMLEDPQ-ERERRERRERMERE---TNGNE 228
Query: 278 TERIEQIVYILSEQDKRKKLMEVLNR---GVKK 307
E Q I E+DK K+L + R G+KK
Sbjct: 229 DEEGRQ--KIREEKDKSKELHAIKERYLGGIKK 259
Score = 39 (18.8 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1243 EQDPEEKELNKDKERE 1258
E++ KE +DKER+
Sbjct: 68 ERERRHKERERDKERD 83
Score = 38 (18.4 bits), Expect = 8.3e-234, Sum P(2) = 8.3e-234
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 206 EDPQERERRERRER 219
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 2240 (793.6 bits), Expect = 2.4e-234, Sum P(2) = 2.4e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
Score = 2094 (742.2 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 408/627 (65%), Positives = 481/627 (76%)
Query: 508 FLTKEERAAEALRKRQAEVXXXXXXXXXXXXXXQEFT-------KEASFESKRENFXXXX 560
FL+K ER AEAL++RQ EV ++F ++ +RE
Sbjct: 163 FLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERME 222
Query: 561 XXXXXXXXXXXXXXXXXXXX-XREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDT 619
+E AIKE F+WDASEDT
Sbjct: 223 RETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT 282
Query: 620 SVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXX 679
S+DYN +YKERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 283 SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRK 342
Query: 680 XXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEI 739
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP I
Sbjct: 343 LRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHI 402
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799
LE+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+
Sbjct: 403 LEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
E++DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIV
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIV 522
Query: 860 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 919
IATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++A
Sbjct: 523 IATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEA 582
Query: 920 EDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
ED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ
Sbjct: 583 EDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQK 642
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQ
Sbjct: 643 VFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 702
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
RE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G
Sbjct: 703 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 762
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+A++F TK+DS +FY+LKQ ++ SPV+
Sbjct: 763 VAITFLTKEDSAVFYELKQAILESPVS 789
Score = 907 (324.3 bits), Expect = 7.7e-111, Sum P(2) = 7.7e-111
Identities = 173/208 (83%), Positives = 194/208 (93%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E+
Sbjct: 405 VIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 465 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMPPA 207
K+LAN+ S K KYRQTVMFTATMPPA
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPA 612
Score = 607 (218.7 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 116/156 (74%), Positives = 136/156 (87%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRP 266
KILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRP
Sbjct: 565 KILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRP 624
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
A VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK L
Sbjct: 625 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 684
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
EK+GYNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA 720
Score = 226 (84.6 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 755 TGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTIL 809
Score = 43 (20.2 bits), Expect = 2.4e-234, Sum P(2) = 2.4e-234
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1243 EQDPEEKELNKDKERE 1258
E+D KE +DKER+
Sbjct: 69 ERDRRHKERERDKERD 84
Score = 38 (18.4 bits), Expect = 8.3e-234, Sum P(2) = 8.3e-234
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 207 EDPQERERRERRER 220
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 2240 (793.6 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
Score = 2094 (742.2 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 408/627 (65%), Positives = 481/627 (76%)
Query: 508 FLTKEERAAEALRKRQAEVXXXXXXXXXXXXXXQEFT-------KEASFESKRENFXXXX 560
FL+K ER AEAL++RQ EV ++F ++ +RE
Sbjct: 163 FLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERME 222
Query: 561 XXXXXXXXXXXXXXXXXXXX-XREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDT 619
+E AIKE F+WDASEDT
Sbjct: 223 RETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT 282
Query: 620 SVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXX 679
S+DYN +YKERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 283 SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRK 342
Query: 680 XXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEI 739
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP I
Sbjct: 343 LRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHI 402
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799
LE+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+
Sbjct: 403 LEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
E++DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIV
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIV 522
Query: 860 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 919
IATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++A
Sbjct: 523 IATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEA 582
Query: 920 EDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
ED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ
Sbjct: 583 EDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQK 642
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQ
Sbjct: 643 VFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 702
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
RE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G
Sbjct: 703 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 762
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+A++F TK+DS +FY+LKQ ++ SPV+
Sbjct: 763 VAITFLTKEDSAVFYELKQAILESPVS 789
Score = 907 (324.3 bits), Expect = 7.7e-111, Sum P(2) = 7.7e-111
Identities = 173/208 (83%), Positives = 194/208 (93%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E+
Sbjct: 405 VIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 465 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMPPA 207
K+LAN+ S K KYRQTVMFTATMPPA
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPA 612
Score = 607 (218.7 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 116/156 (74%), Positives = 136/156 (87%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRP 266
KILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRP
Sbjct: 565 KILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRP 624
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
A VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK L
Sbjct: 625 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 684
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
EK+GYNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA 720
Score = 226 (84.6 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 755 TGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTIL 809
Score = 39 (18.8 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1243 EQDPEEKELNKDKERE 1258
E++ KE +DKER+
Sbjct: 69 ERERRHKERERDKERD 84
Score = 38 (18.4 bits), Expect = 8.3e-234, Sum P(2) = 8.3e-234
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 207 EDPQERERRERRER 220
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 2240 (793.6 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 422/591 (71%), Positives = 492/591 (83%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ V+++SE +
Sbjct: 591 NFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESE 650
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQRE AL++L
Sbjct: 651 KRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNL 710
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G+A++F TK
Sbjct: 711 KAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTK 770
Query: 1782 DDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIFA 1832
+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++ KKRREE IFA
Sbjct: 771 EDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTILT-KKRREETIFA 820
Score = 2094 (742.2 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 408/627 (65%), Positives = 481/627 (76%)
Query: 508 FLTKEERAAEALRKRQAEVXXXXXXXXXXXXXXQEFT-------KEASFESKRENFXXXX 560
FL+K ER AEAL++RQ EV ++F ++ +RE
Sbjct: 163 FLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERME 222
Query: 561 XXXXXXXXXXXXXXXXXXXX-XREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDT 619
+E AIKE F+WDASEDT
Sbjct: 223 RETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT 282
Query: 620 SVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXX 679
S+DYN +YKERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 283 SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRK 342
Query: 680 XXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEI 739
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP I
Sbjct: 343 LRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHI 402
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799
LE+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+
Sbjct: 403 LEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
E++DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIV
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIV 522
Query: 860 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 919
IATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++A
Sbjct: 523 IATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEA 582
Query: 920 EDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
ED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRPA VYIGS GKP ER+EQ
Sbjct: 583 EDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQK 642
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK LEK+GYNACTLHGGKGQEQ
Sbjct: 643 VFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 702
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
RE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY HRIGRTGRAGK G
Sbjct: 703 REFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 762
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+A++F TK+DS +FY+LKQ ++ SPV+
Sbjct: 763 VAITFLTKEDSAVFYELKQAILESPVS 789
Score = 907 (324.3 bits), Expect = 7.7e-111, Sum P(2) = 7.7e-111
Identities = 173/208 (83%), Positives = 194/208 (93%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E+
Sbjct: 405 VIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIRTV V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 465 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMPPA 207
K+LAN+ S K KYRQTVMFTATMPPA
Sbjct: 585 PEKMLANFESGKHKYRQTVMFTATMPPA 612
Score = 607 (218.7 bits), Expect = 1.8e-78, Sum P(2) = 1.8e-78
Identities = 116/156 (74%), Positives = 136/156 (87%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRP 266
KILE+MPV+N KPDT++AED K+LAN+ S K KYRQTVMFTATMPPAVERLARSYLRRP
Sbjct: 565 KILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRP 624
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
A VYIGS GKP ER+EQ V+++SE +KRKKL+ +L +G P+IIFVNQKKG DVLAK L
Sbjct: 625 AVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSL 684
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
EK+GYNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 685 EKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA 720
Score = 226 (84.6 bits), Expect = 3.0e-238, Sum P(2) = 3.0e-238
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS+CPPEL NHPDAQHKPGT++
Sbjct: 755 TGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSSCPPELANHPDAQHKPGTIL 809
Score = 39 (18.8 bits), Expect = 6.5e-234, Sum P(2) = 6.5e-234
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 1243 EQDPEEKELNKDKERE 1258
E++ KE +DKER+
Sbjct: 69 ERERRHKERERDKERD 84
Score = 38 (18.4 bits), Expect = 8.3e-234, Sum P(2) = 8.3e-234
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 207 EDPQERERRERRER 220
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 1995 (707.3 bits), Expect = 6.6e-210, Sum P(2) = 6.6e-210
Identities = 367/546 (67%), Positives = 448/546 (82%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXX 1345
FDWDA EDTS DYN +Y+ RH++QFFGRG++AG D+ AQK++++ FY EM+E RRT
Sbjct: 184 FDWDAGEDTSQDYNKLYQSRHEIQFFGRGSVAGTDVNAQKKEKNSFYQEMMENRRTVDEK 243
Query: 1346 XXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNW 1405
DDRHW K L EM++RDWRIFRED++I+IKGG+VP P+RNW
Sbjct: 244 EQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNW 303
Query: 1406 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 1465
+EA P E+ + +++IGY EPTPIQRQAIPIGLQNRD+IGVAETGSGKT AFLLPLLVWI
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI 363
Query: 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525
SLPK+ R E D GPYAIIMAPTRELAQQIEEETNKFG LGI+TV V+GG SRE+QG
Sbjct: 364 TSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGM 423
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+LR+G E+VIATPGRL+DVLENRYL+LNQCTY++LDEADRM+DMGFEPDVQK+LEYMP T
Sbjct: 424 KLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDT 483
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645
N+K DT++ ++E L+ +++++KYRQTVMFTATM A+ERLAR YLRRPA V+IGS GK
Sbjct: 484 NMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK 543
Query: 1646 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1705
PTER+EQ+VY++ E KRKKL+EVL + P+IIFVNQKKGAD+L+KGL KLG+ L
Sbjct: 544 PTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVL 603
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1765
HGGKGQ+QRE AL +LK G+ DILVATDVAGRGID+KDVS+V+NYDMAKSIEDYTHRIGR
Sbjct: 604 HGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGR 663
Query: 1766 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKR 1825
TGRAGK G A++F T DD+ +++DLKQ+++ SPVS+CPPEL NHPDAQ KPG V KKR
Sbjct: 664 TGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELANHPDAQSKPG-VFTSKKR 722
Query: 1826 REEKIF 1831
++E +F
Sbjct: 723 QDETLF 728
Score = 1883 (667.9 bits), Expect = 1.9e-217, Sum P(3) = 1.9e-217
Identities = 346/515 (67%), Positives = 424/515 (82%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXX 670
FDWDA EDTS DYN +Y+ RH++QFFGRG++AG D+ AQK++++ FY EM+E RRT
Sbjct: 184 FDWDAGEDTSQDYNKLYQSRHEIQFFGRGSVAGTDVNAQKKEKNSFYQEMMENRRTVDEK 243
Query: 671 XXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNW 730
DDRHW K L EM++RDWRIFRED++I+IKGG+VP P+RNW
Sbjct: 244 EQEMHRLEKELKKEKKVAHDDRHWRMKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNW 303
Query: 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 790
+EA P E+ + +++IGY EPTPIQRQAIPIGLQNRD+IGVAETGSGKT AFLLPLLVWI
Sbjct: 304 EEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI 363
Query: 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850
SLPK+ R E D GPYAIIMAPTRELAQQIEEETNKFG LGI+TV V+GG SRE+QG
Sbjct: 364 TSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGM 423
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+LR+G E+VIATPGRL+DVLENRYL+LNQCTY++LDEADRM+DMGFEPDVQK+LEYMP T
Sbjct: 424 KLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDT 483
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 970
N+K DT++ ++E L+ +++++KYRQTVMFTATM A+ERLAR YLRRPA V+IGS GK
Sbjct: 484 NMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK 543
Query: 971 PTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 1030
PTER+EQ+VY++ E KRKKL+EVL + P+IIFVNQKKGAD+L+KGL KLG+ L
Sbjct: 544 PTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVL 603
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090
HGGKGQ+QRE AL +LK G+ DILVATDVAGRGID+KDVS+V+NYDMAKSIEDYTHRIGR
Sbjct: 604 HGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGR 663
Query: 1091 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
TGRAGK G A++F T DD+ +++DLKQ+++ SPV+
Sbjct: 664 TGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVS 698
Score = 835 (299.0 bits), Expect = 2.9e-100, Sum P(2) = 2.9e-100
Identities = 180/331 (54%), Positives = 236/331 (71%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++IGY EPTPIQRQAIPIGLQNRD+IGVAETGSGKT AFLLPLLVWI SLPK+ R E
Sbjct: 316 VKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHR 375
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GPYAIIMAPTRELAQQIEEETNKFG LGI+TV V+GG SRE+QG +LR+G E+VIAT
Sbjct: 376 DLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIAT 435
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+DVLENRYL+LNQCTY++LDEADRM+DMGFEPDVQK+LEYMP TN+K DT++ ++E
Sbjct: 436 PGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNE 495
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPA--KIL-EYM--P-VTNL----KPDTEDAEDENKL 231
L+ +++++KYRQTVMFTATM A ++ +Y+ P V ++ KP TE E +
Sbjct: 496 EALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKP-TERVEQVVYM 554
Query: 232 LANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSE 290
+ +KK + V+ + PP + + + + + +G KPT +++
Sbjct: 555 VPEDRKRKKLVE-VLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPT-----VLHGGKG 608
Query: 291 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADV 321
QD+R+ ++ L G ++ +G DV
Sbjct: 609 QDQREYALQALKEGTSDILVATDVAGRGIDV 639
Score = 521 (188.5 bits), Expect = 8.0e-64, Sum P(2) = 8.0e-64
Identities = 98/155 (63%), Positives = 126/155 (81%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 267
K+LEYMP TN+K DT++ ++E L+ +++++KYRQTVMFTATM A+ERLAR YLRRPA
Sbjct: 475 KVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPA 534
Query: 268 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
V+IGS GKPTER+EQ+VY++ E KRKKL+EVL + P+IIFVNQKKGAD+L+KGL
Sbjct: 535 VVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLT 594
Query: 328 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
KLG+ LHGGKGQ+QRE AL +LK G+ DIL+A
Sbjct: 595 KLGFKPTVLHGGKGQDQREYALQALKEGTSDILVA 629
Score = 200 (75.5 bits), Expect = 1.9e-217, Sum P(3) = 1.9e-217
Identities = 34/52 (65%), Positives = 44/52 (84%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGRAGK G A++F T DD+ +++DLKQ+++ SPVS+CPPEL NHPDAQ KPG
Sbjct: 664 TGRAGKHGKAITFLTPDDTAVYFDLKQVLVESPVSSCPPELANHPDAQSKPG 715
Score = 57 (25.1 bits), Expect = 1.9e-217, Sum P(3) = 1.9e-217
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 508 FLTKEERAAEALRKRQAEV 526
FL+K ERAA AL++R+ EV
Sbjct: 27 FLSKAERAALALKRREEEV 45
Score = 48 (22.0 bits), Expect = 3.2e-84, Sum P(2) = 3.2e-84
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 899 DVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
D++++L PV++ P+ + D + SKK+ +T+
Sbjct: 687 DLKQVLVESPVSSCPPELANHPDAQSKPGVFTSKKRQDETL 727
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 1348 (479.6 bits), Expect = 6.8e-186, Sum P(3) = 6.8e-186
Identities = 258/386 (66%), Positives = 303/386 (78%)
Query: 1243 EQDPEEKELNKDKEREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDTSVDYNSIY 1302
E+ ++ KDK +E AIKE F+WDASEDTS+DYN +Y
Sbjct: 231 EEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLY 290
Query: 1303 KERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXXXXXXXXXX 1362
KERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 291 KERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQ 350
Query: 1363 XWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIG 1422
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP ILE+I+K G
Sbjct: 351 RWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCG 410
Query: 1423 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 1482
Y EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E++DQGPY
Sbjct: 411 YKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPY 470
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
AII+APTRELAQQIEEET KFG PLGIR V V+GG+SRE+QGFRLR+GCEIVIATPGRLI
Sbjct: 471 AIILAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLI 530
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
DVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED K+LA
Sbjct: 531 DVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLA 590
Query: 1603 NYNS-KKKYRQTVMFTATMPPAVERL 1627
N+ S K KYRQT+ +T PP RL
Sbjct: 591 NFESGKHKYRQTLPCLST-PPIPTRL 615
Score = 1343 (477.8 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
Identities = 270/454 (59%), Positives = 320/454 (70%)
Query: 508 FLTKEERAAEALRKRQAEVXXXXXXXXXXXXXXQEFT-------KEASFESKRENFXXXX 560
FL+K ER AEAL++RQ EV ++F ++ +RE
Sbjct: 163 FLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERME 222
Query: 561 XXXXXXXXXXXXXXXXXXXX-XREGEAIKEXXXXXXXXXXXXXXXXXXXXXFDWDASEDT 619
+E AIKE F+WDASEDT
Sbjct: 223 RETNGNEDEEGRQKIREEKDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDT 282
Query: 620 SVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAXXXXXXXXXXX 679
S+DYN +YKERHQVQ GRG IAGID+K QKR+QS+FYG+++EKRRT
Sbjct: 283 SIDYNPLYKERHQVQLLGRGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRK 342
Query: 680 XXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEI 739
WDDRHW++K LDEMT+RDWRIFREDYSIT KGGK+P+P+R+WK++SLP I
Sbjct: 343 LRKKEAKQRWDDRHWSQKKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHI 402
Query: 740 LEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 799
LE+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+
Sbjct: 403 LEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRI 462
Query: 800 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
E++DQGPYAII+APTRELAQQIEEET KFG PLGIR V V+GG+SRE+QGFRLR+GCEIV
Sbjct: 463 EESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIV 522
Query: 860 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 919
IATPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++A
Sbjct: 523 IATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEA 582
Query: 920 EDENKLLANYNS-KKKYRQTVMFTATMPPAVERL 952
ED K+LAN+ S K KYRQT+ +T PP RL
Sbjct: 583 EDPEKMLANFESGKHKYRQTLPCLST-PPIPTRL 615
Score = 867 (310.3 bits), Expect = 3.9e-130, Sum P(2) = 3.9e-130
Identities = 167/224 (74%), Positives = 196/224 (87%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I+K GY EPTPIQRQAIPIGLQNRDIIGVAETGSGKT AFL+PLLVWI +LPKI R+E+
Sbjct: 405 VIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEE 464
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+DQGPYAII+APTRELAQQIEEET KFG PLGIR V V+GG+SRE+QGFRLR+GCEIVIA
Sbjct: 465 SDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIA 524
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLIDVLENRYLVL++CTY+VLDEADRMIDMGFEPDVQKILE+MPV+N KPDT++AED
Sbjct: 525 TPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAED 584
Query: 181 ENKLLANYNS-KKKYRQTVMFTATMP-PAKILEYMPVTNLKPDT 222
K+LAN+ S K KYRQT+ +T P P ++L +++ P +
Sbjct: 585 PEKMLANFESGKHKYRQTLPCLSTPPIPTRLLSLPSLSSAHPSS 628
Score = 450 (163.5 bits), Expect = 6.8e-186, Sum P(3) = 6.8e-186
Identities = 84/118 (71%), Positives = 100/118 (84%)
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
YNACTLHGGKGQEQRE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
HRIGRTGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS PP L + H+ G
Sbjct: 730 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALEKQGGSGHREG 787
Score = 423 (154.0 bits), Expect = 1.2e-179, Sum P(2) = 1.2e-179
Identities = 78/101 (77%), Positives = 93/101 (92%)
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
YNACTLHGGKGQEQRE AL++LK G+KDILVATDVAGRGIDI+DVSMV+NYDMAK+IEDY
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
HRIGRTGRAGK G+A++F TK+DS +FY+LKQ ++ SPV+
Sbjct: 730 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVS 770
Score = 149 (57.5 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAG 1182
TGRAGK G+A++F TK+DS +FY+LKQ ++ SPVS PP L + H+ G G
Sbjct: 736 TGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALEKQGGSGHREGPTSTTG 793
Score = 144 (55.7 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 208 KILEYMPVTNLKPDTEDAEDENKLLANYNS-KKKYRQTVMFTATMPPAVERL 258
KILE+MPV+N KPDT++AED K+LAN+ S K KYRQT+ +T PP RL
Sbjct: 565 KILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTLPCLST-PPIPTRL 615
Score = 141 (54.7 bits), Expect = 1.0e-110, Sum P(3) = 1.0e-110
Identities = 26/32 (81%), Positives = 30/32 (93%)
Query: 331 YNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
YNACTLHGGKGQEQRE AL++LK G+KDIL+A
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVA 701
Score = 43 (20.2 bits), Expect = 6.8e-186, Sum P(3) = 6.8e-186
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1243 EQDPEEKELNKDKERE 1258
E+D KE +DKER+
Sbjct: 69 ERDRRHKERERDKERD 84
Score = 38 (18.4 bits), Expect = 2.3e-185, Sum P(3) = 2.3e-185
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 1244 QDPEEKELNKDKER 1257
+DP+E+E + +ER
Sbjct: 207 EDPQERERRERRER 220
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 1540 (547.2 bits), Expect = 4.8e-158, P = 4.8e-158
Identities = 304/553 (54%), Positives = 394/553 (71%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI-DIKAQKRDQSKFYGEMLEKRRTEAX 1344
F+W+A EDTS DYN +Y+ RH+ FFGRG +AG D A +K Y + LE R EA
Sbjct: 228 FEWNAEEDTSGDYNPLYQHRHEANFFGRGRLAGFGDDVADS--VAKKYAKALEDRDREAG 285
Query: 1345 XXXXXXXXXXXXXXXXXXXWD--DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPV 1402
+ D+HW+EK L+ M ERDWRIF+ED++I KGG VP+P+
Sbjct: 286 SIRAREILEMERRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPM 345
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
R+W E+ LP +LE+++++GY EPTPIQR AIPI +Q+RD+IGVA TGSGKT AFLLPLL
Sbjct: 346 RSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 1463 VWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+I LP+I E + GPYAI++APTRELAQQIE E KF PLG V +VGG S E
Sbjct: 406 CYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFE 465
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
EQ + LR G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+
Sbjct: 466 EQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDA 525
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
+PVTN KPDTE+AED + + + SK +YRQT+M+TATMP AVER+AR YLRRPA V IG
Sbjct: 526 LPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIG 585
Query: 1642 SVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1699
S G+ + +EQ V +++ +DKRKK L E+L+ G + P+I+FVN K+ D +A+ +++ G
Sbjct: 586 SAGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWG 645
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
+++ TLHG K QEQRE AL S++ GS D+LVATD+AGRGID+ DVS+VIN++MA SIE Y
Sbjct: 646 FSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESY 705
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTV 1819
THRIGRTGRAGK G+A++F +D+ + YDLKQM+I SP+S P EL H AQ KP T
Sbjct: 706 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP-TR 764
Query: 1820 MVPKKRREEKIFA 1832
KK E FA
Sbjct: 765 GAGKKIEEASGFA 777
Score = 1496 (531.7 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 289/521 (55%), Positives = 380/521 (72%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI-DIKAQKRDQSKFYGEMLEKRRTEAX 669
F+W+A EDTS DYN +Y+ RH+ FFGRG +AG D A +K Y + LE R EA
Sbjct: 228 FEWNAEEDTSGDYNPLYQHRHEANFFGRGRLAGFGDDVADS--VAKKYAKALEDRDREAG 285
Query: 670 XXXXXXXXXXXXXXXXXXXWD--DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPV 727
+ D+HW+EK L+ M ERDWRIF+ED++I KGG VP+P+
Sbjct: 286 SIRAREILEMERRRREESTRNQLDKHWSEKKLEHMRERDWRIFKEDFNIATKGGSVPNPM 345
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
R+W E+ LP +LE+++++GY EPTPIQR AIPI +Q+RD+IGVA TGSGKT AFLLPLL
Sbjct: 346 RSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
Query: 788 VWIQSLPKIARME-DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
+I LP+I E + GPYAI++APTRELAQQIE E KF PLG V +VGG S E
Sbjct: 406 CYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFE 465
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
EQ + LR G EI+IATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+
Sbjct: 466 EQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDA 525
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
+PVTN KPDTE+AED + + + SK +YRQT+M+TATMP AVER+AR YLRRPA V IG
Sbjct: 526 LPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIG 585
Query: 967 SVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVLAKGLEKLG 1024
S G+ + +EQ V +++ +DKRKK L E+L+ G + P+I+FVN K+ D +A+ +++ G
Sbjct: 586 SAGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWG 645
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
+++ TLHG K QEQRE AL S++ GS D+LVATD+AGRGID+ DVS+VIN++MA SIE Y
Sbjct: 646 FSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESY 705
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVT 1125
THRIGRTGRAGK G+A++F +D+ + YDLKQM+I SP++
Sbjct: 706 THRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPIS 746
Score = 671 (241.3 bits), Expect = 2.6e-77, Sum P(2) = 2.6e-77
Identities = 129/208 (62%), Positives = 161/208 (77%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME- 59
+++++GY EPTPIQR AIPI +Q+RD+IGVA TGSGKT AFLLPLL +I LP+I E
Sbjct: 360 LVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEW 419
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ GPYAI++APTRELAQQIE E KF PLG V +VGG S EEQ + LR G EI+I
Sbjct: 420 RKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIII 479
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 179
ATPGRL+D +E R LVL+QC Y+++DEADRMID+GFE V KIL+ +PVTN KPDTE+AE
Sbjct: 480 ATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAE 539
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPA 207
D + + + SK +YRQT+M+TATMP A
Sbjct: 540 DSSAMSRHLGSKDRYRQTMMYTATMPTA 567
Score = 424 (154.3 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
Identities = 84/160 (52%), Positives = 119/160 (74%)
Query: 205 PPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 264
P KIL+ +PVTN KPDTE+AED + + + SK +YRQT+M+TATMP AVER+AR YLR
Sbjct: 518 PVNKILDALPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLR 577
Query: 265 RPATVYIGSVGKPTERIEQIVYILSEQDKRKK-LMEVLNRG-VKKPVIIFVNQKKGADVL 322
RPA V IGS G+ + +EQ V +++ +DKRKK L E+L+ G + P+I+FVN K+ D +
Sbjct: 578 RPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAI 637
Query: 323 AKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
A+ +++ G+++ TLHG K QEQRE AL S++ GS D+L+A
Sbjct: 638 AREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVA 677
Score = 150 (57.9 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKP 1175
TGRAGK G+A++F +D+ + YDLKQM+I SP+S P EL H AQ KP
Sbjct: 712 TGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSKP 762
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 324 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
K E LG+N ++ GG E++ SL+ G++ I+
Sbjct: 446 KFTEPLGFNVVSIVGGHSFEEQAY---SLRNGAEIII 479
Score = 40 (19.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 263 LRRPATVYIGSVGKPTERIEQIVYILSE-----QDKRKKLMEVLNRGVKKPV 309
LR A + I + G+ + IE+ + +LS+ D+ +++++ G ++PV
Sbjct: 471 LRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDL---GFEEPV 519
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 1492 (530.3 bits), Expect = 8.7e-159, Sum P(3) = 8.7e-159
Identities = 303/593 (51%), Positives = 393/593 (66%)
Query: 1248 EKELNKDKEREGEAIKEXXXXXXXXXXXXXX-XXXXXXXFDWDASEDTSVDYNSIYKERH 1306
EK + ++KE+E +AIKE FDW+ +EDTS D N +Y+ H
Sbjct: 149 EKLVEREKEKELDAIKEQYLGGKKPKKRVIRPSEKFRFSFDWENTEDTSRDMNVLYQNPH 208
Query: 1307 QVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEK-RRTEAXXXXXXXXXXXXXXXXXXXXW 1364
+ Q FGRG AG+D + QK+ +K EM ++ R+ + +
Sbjct: 209 EAQLLFGRGFRAGMDRREQKKQAAKHEKEMRDEIRKKDGIVEKPEEAAAQRVREEAADTY 268
Query: 1365 D------DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII 1418
D DRHW++K L+EMTERDWRIFRED++I+ KG ++P P+R+W+E+ L +E+L+ +
Sbjct: 269 DSFDMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAV 328
Query: 1419 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 1478
E+ GY +P+PIQ AIP+GLQ RD+IG+AETGSGKT AF+LP+L +I LP ++ E+
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE-ENET 387
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 1538
+GPYA++MAPTRELAQQIEEET KF LG R +VGG S EEQG ++ GCEIVIATP
Sbjct: 388 EGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATP 447
Query: 1539 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598
GRLID LE RY VLNQC Y+VLDEADRMIDMGFEP V +L+ MP +NLKP+ E+ E
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE--- 504
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 1658
+ KK YR T MF+ATMPP VERLAR YLR P V IG+ GK T+ I Q V ++
Sbjct: 505 -----LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMK 559
Query: 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718
E +K +L ++L+ +K I+FVN KK D +AK L+K GY TLHGGK QEQRE++L
Sbjct: 560 ESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISL 619
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778
+ ++LVATDV GRGIDI DV+ VINYDM K IE YTHRIGRTGRAGK G+A SF
Sbjct: 620 EGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSF 679
Query: 1779 CTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKIF 1831
T D+ +FYDLKQM++ S S PPEL H ++ KPGTV R + ++
Sbjct: 680 LTLHDTEVFYDLKQMLVQSN-SAVPPELARHEASRFKPGTVPDRPPRHSDTVY 731
Score = 1426 (507.0 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 282/520 (54%), Positives = 362/520 (69%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEK-RRTEA 668
FDW+ +EDTS D N +Y+ H+ Q FGRG AG+D + QK+ +K EM ++ R+ +
Sbjct: 188 FDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKQAAKHEKEMRDEIRKKDG 247
Query: 669 XXXXXXXXXXXXXXXXXXXXWD------DRHWTEKSLDEMTERDWRIFREDYSITIKGGK 722
+D DRHW++K L+EMTERDWRIFRED++I+ KG +
Sbjct: 248 IVEKPEEAAAQRVREEAADTYDSFDMRVDRHWSDKRLEEMTERDWRIFREDFNISYKGSR 307
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
+P P+R+W+E+ L +E+L+ +E+ GY +P+PIQ AIP+GLQ RD+IG+AETGSGKT AF
Sbjct: 308 IPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAF 367
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+LP+L +I LP ++ E+ +GPYA++MAPTRELAQQIEEET KF LG R +VGG
Sbjct: 368 VLPMLAYISRLPPMSE-ENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGG 426
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
S EEQG ++ GCEIVIATPGRLID LE RY VLNQC Y+VLDEADRMIDMGFEP V
Sbjct: 427 QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAG 486
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
+L+ MP +NLKP+ E+ E + KK YR T MF+ATMPP VERLAR YLR P
Sbjct: 487 VLDAMPSSNLKPENEEEE--------LDEKKIYRTTYMFSATMPPGVERLARKYLRNPVV 538
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
V IG+ GK T+ I Q V ++ E +K +L ++L+ +K I+FVN KK D +AK L+K
Sbjct: 539 VTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDK 598
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIE 1082
GY TLHGGK QEQRE++L + ++LVATDV GRGIDI DV+ VINYDM K IE
Sbjct: 599 AGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIE 658
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
YTHRIGRTGRAGK G+A SF T D+ +FYDLKQM++ S
Sbjct: 659 MYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQS 698
Score = 644 (231.8 bits), Expect = 4.8e-75, Sum P(2) = 4.8e-75
Identities = 127/205 (61%), Positives = 154/205 (75%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E+ GY +P+PIQ AIP+GLQ RD+IG+AETGSGKT AF+LP+L +I LP ++ E+
Sbjct: 328 VERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE-ENE 386
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GPYA++MAPTRELAQQIEEET KF LG R +VGG S EEQG ++ GCEIVIAT
Sbjct: 387 TEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIAT 446
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRLID LE RY VLNQC Y+VLDEADRMIDMGFEP V +L+ MP +NLKP+ E+ E
Sbjct: 447 PGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEE-- 504
Query: 182 NKLLANYNSKKKYRQTVMFTATMPP 206
+ KK YR T MF+ATMPP
Sbjct: 505 ------LDEKKIYRTTYMFSATMPP 523
Score = 346 (126.9 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 73/156 (46%), Positives = 99/156 (63%)
Query: 207 AKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 266
A +L+ MP +NLKP+ E+ E + KK YR T MF+ATMPP VERLAR YLR P
Sbjct: 485 AGVLDAMPSSNLKPENEEEE--------LDEKKIYRTTYMFSATMPPGVERLARKYLRNP 536
Query: 267 ATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL 326
V IG+ GK T+ I Q V ++ E +K +L ++L+ +K I+FVN KK D +AK L
Sbjct: 537 VVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNL 596
Query: 327 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+K GY TLHGGK QEQRE++L + ++L+A
Sbjct: 597 DKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVA 632
Score = 156 (60.0 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 1107 DDSHLF-YDL-KQM-MISSPV--TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTC 1161
D +H+ YD+ K + M + + TGRAGK G+A SF T D+ +FYDLKQM++ S S
Sbjct: 644 DVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSN-SAV 702
Query: 1162 PPELLNHPDAQHKPGTV 1178
PPEL H ++ KPGTV
Sbjct: 703 PPELARHEASRFKPGTV 719
Score = 48 (22.0 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 508 FLTKEERAAEALRKRQAEV 526
FLTK++R AL++RQ ++
Sbjct: 27 FLTKKQREELALKRRQDQI 45
Score = 44 (20.5 bits), Expect = 8.7e-159, Sum P(3) = 8.7e-159
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1243 EQDPEEKELNKDKEREGE 1260
E+D E N++KERE E
Sbjct: 122 ERDREPDRRNREKEREEE 139
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 1304 (464.1 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 260/462 (56%), Positives = 333/462 (72%)
Query: 1366 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 1425
++HW++KS +EMT+RDWRIFRED I IKGG VP P+R W+E++L ++L+ I+K Y +
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E + GPYA++
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETSQDGPYALV 779
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI TPGRL D L
Sbjct: 780 IAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL 839
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 1605
E Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA + +
Sbjct: 840 EKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALALQEEMMTKA 898
Query: 1606 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+ YR T MF+ATMPP+VERL+R YLR PA + IG G IEQ + L+E K++K
Sbjct: 899 GHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQK 958
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L E+L + P+I+FVNQKK AD+++K + K+ Y A LHGGK QE RE L++ K
Sbjct: 959 LQEILEM-YEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAE 1017
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
DILVATDVAGRGID+ V +VIN+DM K IE YTHRIGRTGRAG +GLA+SF T+ DSH
Sbjct: 1018 FDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSH 1077
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM-VPKKRR 1826
LFYDLKQ +ISS + P EL N+P ++ KPGTVM PKK +
Sbjct: 1078 LFYDLKQFLISSN-NIVPLELANNPASKVKPGTVMQTPKKNQ 1118
Score = 1252 (445.8 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 246/432 (56%), Positives = 314/432 (72%)
Query: 691 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 750
++HW++KS +EMT+RDWRIFRED I IKGG VP P+R W+E++L ++L+ I+K Y +
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E + GPYA++
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETSQDGPYALV 779
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI TPGRL D L
Sbjct: 780 IAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL 839
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 930
E Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA + +
Sbjct: 840 EKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALALQEEMMTKA 898
Query: 931 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+ YR T MF+ATMPP+VERL+R YLR PA + IG G IEQ + L+E K++K
Sbjct: 899 GHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQK 958
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L E+L + P+I+FVNQKK AD+++K + K+ Y A LHGGK QE RE L++ K
Sbjct: 959 LQEILEM-YEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAE 1017
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
DILVATDVAGRGID+ V +VIN+DM K IE YTHRIGRTGRAG +GLA+SF T+ DSH
Sbjct: 1018 FDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSH 1077
Query: 1111 LFYDLKQMMISS 1122
LFYDLKQ +ISS
Sbjct: 1078 LFYDLKQFLISS 1089
Score = 564 (203.6 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 115/206 (55%), Positives = 146/206 (70%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K Y +PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E +
Sbjct: 713 IKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETS 771
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GPYA+++AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI T
Sbjct: 772 QDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGT 831
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D LE Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA
Sbjct: 832 PGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALAL 890
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPA 207
+ + + YR T MF+ATMPP+
Sbjct: 891 QEEMMTKAGHRLYRLTQMFSATMPPS 916
Score = 322 (118.4 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 70/154 (45%), Positives = 98/154 (63%)
Query: 209 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 268
IL+ +P +NLK + +DA + + + YR T MF+ATMPP+VERL+R YLR PA
Sbjct: 872 ILDKIPTSNLKSE-DDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAY 930
Query: 269 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 328
+ IG G IEQ + L+E K++KL E+L + P+I+FVNQKK AD+++K + K
Sbjct: 931 ISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEM-YEPPIIVFVNQKKVADIISKSITK 989
Query: 329 LGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+ Y A LHGGK QE RE L++ K DIL+A
Sbjct: 990 MKYKAVALHGGKAQEIREQTLSAFKNAEFDILVA 1023
Score = 169 (64.5 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAG +GLA+SF T+ DSHLFYDLKQ +ISS + P EL N+P ++ KPGTVM
Sbjct: 1058 TGRAGMKGLAISFITEHDSHLFYDLKQFLISSN-NIVPLELANNPASKVKPGTVM 1111
Score = 127 (49.8 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 611 FDWDASEDTSV-DYNSIYKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEKR 664
F+WD SEDTS D N +Y+ R + Q FGRG IAGID++ Q++ ++ FY ++++ R
Sbjct: 483 FEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYIAGIDVREQRK-KNNFYDKLVQNR 537
Score = 127 (49.8 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 1286 FDWDASEDTSV-DYNSIYKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEKR 1339
F+WD SEDTS D N +Y+ R + Q FGRG IAGID++ Q++ ++ FY ++++ R
Sbjct: 483 FEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYIAGIDVREQRK-KNNFYDKLVQNR 537
Score = 43 (20.2 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1243 EQDPEEKELN-KDKEREGE 1260
E D ++K ++ K+KE EGE
Sbjct: 292 ENDKQKKMISSKEKEEEGE 310
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 263 LRRPATVYIGSVGKPTERIEQIVYILSE 290
LRR + IG+ G+ + +E+ +L++
Sbjct: 821 LRRGVEIVIGTPGRLQDCLEKAYTVLNQ 848
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 1304 (464.1 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 260/462 (56%), Positives = 333/462 (72%)
Query: 1366 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 1425
++HW++KS +EMT+RDWRIFRED I IKGG VP P+R W+E++L ++L+ I+K Y +
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E + GPYA++
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETSQDGPYALV 779
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI TPGRL D L
Sbjct: 780 IAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL 839
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 1605
E Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA + +
Sbjct: 840 EKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALALQEEMMTKA 898
Query: 1606 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+ YR T MF+ATMPP+VERL+R YLR PA + IG G IEQ + L+E K++K
Sbjct: 899 GHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQK 958
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L E+L + P+I+FVNQKK AD+++K + K+ Y A LHGGK QE RE L++ K
Sbjct: 959 LQEILEM-YEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAE 1017
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
DILVATDVAGRGID+ V +VIN+DM K IE YTHRIGRTGRAG +GLA+SF T+ DSH
Sbjct: 1018 FDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSH 1077
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM-VPKKRR 1826
LFYDLKQ +ISS + P EL N+P ++ KPGTVM PKK +
Sbjct: 1078 LFYDLKQFLISSN-NIVPLELANNPASKVKPGTVMQTPKKNQ 1118
Score = 1252 (445.8 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 246/432 (56%), Positives = 314/432 (72%)
Query: 691 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 750
++HW++KS +EMT+RDWRIFRED I IKGG VP P+R W+E++L ++L+ I+K Y +
Sbjct: 661 EKHWSQKSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEK 720
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E + GPYA++
Sbjct: 721 PTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETSQDGPYALV 779
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI TPGRL D L
Sbjct: 780 IAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCL 839
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 930
E Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA + +
Sbjct: 840 EKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALALQEEMMTKA 898
Query: 931 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+ YR T MF+ATMPP+VERL+R YLR PA + IG G IEQ + L+E K++K
Sbjct: 899 GHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQK 958
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L E+L + P+I+FVNQKK AD+++K + K+ Y A LHGGK QE RE L++ K
Sbjct: 959 LQEILEM-YEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAE 1017
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
DILVATDVAGRGID+ V +VIN+DM K IE YTHRIGRTGRAG +GLA+SF T+ DSH
Sbjct: 1018 FDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSH 1077
Query: 1111 LFYDLKQMMISS 1122
LFYDLKQ +ISS
Sbjct: 1078 LFYDLKQFLISS 1089
Score = 564 (203.6 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 115/206 (55%), Positives = 146/206 (70%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K Y +PTPIQ QAIPI L+ RD+IG+AETGSGKT AF+LP+L +++ LP + E +
Sbjct: 713 IKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLT-YETS 771
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GPYA+++AP+RELA QI EETNKF + RTV VVGG + E Q F LR G EIVI T
Sbjct: 772 QDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGT 831
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D LE Y VLNQC Y++LDEADRM+DMGFE V IL+ +P +NLK + +DA
Sbjct: 832 PGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSE-DDALAL 890
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPA 207
+ + + YR T MF+ATMPP+
Sbjct: 891 QEEMMTKAGHRLYRLTQMFSATMPPS 916
Score = 322 (118.4 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 70/154 (45%), Positives = 98/154 (63%)
Query: 209 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 268
IL+ +P +NLK + +DA + + + YR T MF+ATMPP+VERL+R YLR PA
Sbjct: 872 ILDKIPTSNLKSE-DDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAY 930
Query: 269 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 328
+ IG G IEQ + L+E K++KL E+L + P+I+FVNQKK AD+++K + K
Sbjct: 931 ISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEM-YEPPIIVFVNQKKVADIISKSITK 989
Query: 329 LGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+ Y A LHGGK QE RE L++ K DIL+A
Sbjct: 990 MKYKAVALHGGKAQEIREQTLSAFKNAEFDILVA 1023
Score = 169 (64.5 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 35/55 (63%), Positives = 43/55 (78%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVM 1179
TGRAG +GLA+SF T+ DSHLFYDLKQ +ISS + P EL N+P ++ KPGTVM
Sbjct: 1058 TGRAGMKGLAISFITEHDSHLFYDLKQFLISSN-NIVPLELANNPASKVKPGTVM 1111
Score = 127 (49.8 bits), Expect = 5.4e-155, Sum P(3) = 5.4e-155
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 611 FDWDASEDTSV-DYNSIYKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEKR 664
F+WD SEDTS D N +Y+ R + Q FGRG IAGID++ Q++ ++ FY ++++ R
Sbjct: 483 FEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYIAGIDVREQRK-KNNFYDKLVQNR 537
Score = 127 (49.8 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 1286 FDWDASEDTSV-DYNSIYKERHQVQF-FGRGNIAGIDIKAQKRDQSKFYGEMLEKR 1339
F+WD SEDTS D N +Y+ R + Q FGRG IAGID++ Q++ ++ FY ++++ R
Sbjct: 483 FEWDQSEDTSRNDSNPLYQNRLEPQLLFGRGYIAGIDVREQRK-KNNFYDKLVQNR 537
Score = 43 (20.2 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 1243 EQDPEEKELN-KDKEREGE 1260
E D ++K ++ K+KE EGE
Sbjct: 292 ENDKQKKMISSKEKEEEGE 310
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 263 LRRPATVYIGSVGKPTERIEQIVYILSE 290
LRR + IG+ G+ + +E+ +L++
Sbjct: 821 LRRGVEIVIGTPGRLQDCLEKAYTVLNQ 848
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 1311 (466.6 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
Identities = 258/532 (48%), Positives = 360/532 (67%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEK--RRTEA 1343
FDWDA++DT D + + FGRG + G D ++ ++ +S ++++ + TE
Sbjct: 132 FDWDATDDTMKDAETSASPEATIAVFGRGKLGGFDDQSIRKAKSN--SGLIQRLLQGTEQ 189
Query: 1344 XXXXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVR 1403
WDD W EK L+ M RDWRI +EDY+I+IKG +P+P+R
Sbjct: 190 DKARAHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLR 249
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
NW+EA LP+E+L++++K+ Y EP+ IQR AIP+ LQ +D+IG+AETGSGKT AF++PL++
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
I LP + + GPYA+++APTRELAQQI+ E NKF PLG R V VVGG + EEQ
Sbjct: 310 AISKLPPLTE-SNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQ 368
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
F++ G IV+ATPGRL+D LE R VL+QCTY+V+DEADRM+DMGFE DV KIL +P
Sbjct: 369 SFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Query: 1584 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 1643
+N +E + +LA NS RQT+MF+AT+PP V LA+SYL P + IG++
Sbjct: 429 SSNA------SEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Query: 1644 GKPTERIEQIVYILSEQDKR-KKLMEVL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
G+ +R+EQ V ++S+ K+ +++ E+L NR P+IIFVN K+ + +AK L +G+
Sbjct: 483 GQAVDRVEQRVEMISDDSKKWRRVEEILESNR-FSPPIIIFVNLKRNIEAIAKQLNAIGW 541
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1760
+A TLHG K QEQRE A+ L+ + DILVATD+AGRGIDI +VS+V+NY+MAKSIEDYT
Sbjct: 542 HAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYT 601
Query: 1761 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDA 1812
HRIGRTGRAGK G A++F +D+ ++YDL+ ++ S + P EL NH A
Sbjct: 602 HRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAA 653
Score = 1288 (458.5 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 252/517 (48%), Positives = 353/517 (68%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEK--RRTEA 668
FDWDA++DT D + + FGRG + G D ++ ++ +S ++++ + TE
Sbjct: 132 FDWDATDDTMKDAETSASPEATIAVFGRGKLGGFDDQSIRKAKSN--SGLIQRLLQGTEQ 189
Query: 669 XXXXXXXXXXXXXXXXXXXXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVR 728
WDD W EK L+ M RDWRI +EDY+I+IKG +P+P+R
Sbjct: 190 DKARAHELIQLQEKRAKKIDWDDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLR 249
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
NW+EA LP+E+L++++K+ Y EP+ IQR AIP+ LQ +D+IG+AETGSGKT AF++PL++
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
I LP + + GPYA+++APTRELAQQI+ E NKF PLG R V VVGG + EEQ
Sbjct: 310 AISKLPPLTE-SNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQ 368
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
F++ G IV+ATPGRL+D LE R VL+QCTY+V+DEADRM+DMGFE DV KIL +P
Sbjct: 369 SFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLP 428
Query: 909 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 968
+N +E + +LA NS RQT+MF+AT+PP V LA+SYL P + IG++
Sbjct: 429 SSNA------SEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
Query: 969 GKPTERIEQIVYILSEQDKR-KKLMEVL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
G+ +R+EQ V ++S+ K+ +++ E+L NR P+IIFVN K+ + +AK L +G+
Sbjct: 483 GQAVDRVEQRVEMISDDSKKWRRVEEILESNR-FSPPIIIFVNLKRNIEAIAKQLNAIGW 541
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYT 1085
+A TLHG K QEQRE A+ L+ + DILVATD+AGRGIDI +VS+V+NY+MAKSIEDYT
Sbjct: 542 HAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYT 601
Query: 1086 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
HRIGRTGRAGK G A++F +D+ ++YDL+ ++ S
Sbjct: 602 HRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
Score = 584 (210.6 bits), Expect = 2.5e-64, Sum P(3) = 2.5e-64
Identities = 113/206 (54%), Positives = 149/206 (72%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+++K+ Y EP+ IQR AIP+ LQ +D+IG+AETGSGKT AF++PL++ I LP + +
Sbjct: 263 VLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTE-SN 321
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GPYA+++APTRELAQQI+ E NKF PLG R V VVGG + EEQ F++ G IV+A
Sbjct: 322 MHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVA 381
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D LE R VL+QCTY+V+DEADRM+DMGFE DV KIL +P +N +E
Sbjct: 382 TPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNA------SEK 435
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
+ +LA NS RQT+MF+AT+PP
Sbjct: 436 DGSILATANSSSSRRQTIMFSATLPP 461
Score = 309 (113.8 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 63/146 (43%), Positives = 96/146 (65%)
Query: 220 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 279
P + +E + +LA NS RQT+MF+AT+PP V LA+SYL P + IG++G+ +
Sbjct: 428 PSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD 487
Query: 280 RIEQIVYILSEQDKR-KKLMEVL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTL 336
R+EQ V ++S+ K+ +++ E+L NR P+IIFVN K+ + +AK L +G++A TL
Sbjct: 488 RVEQRVEMISDDSKKWRRVEEILESNR-FSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTL 546
Query: 337 HGGKGQEQRELALNSLKGGSKDILMA 362
HG K QEQRE A+ L+ + DIL+A
Sbjct: 547 HGSKSQEQRERAIEQLRNKTADILVA 572
Score = 103 (41.3 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDA 1171
TGRAGK G A++F +D+ ++YDL+ ++ S + P EL NH A
Sbjct: 607 TGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAA 653
Score = 53 (23.7 bits), Expect = 4.9e-144, Sum P(3) = 4.9e-144
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 508 FLTKEERAAEALRKRQAEV 526
FL+K ERA AL +RQ EV
Sbjct: 29 FLSKAERARLALERRQKEV 47
Score = 37 (18.1 bits), Expect = 2.5e-64, Sum P(3) = 2.5e-64
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 511 KEERAAEALRKRQAEV 526
+ ERA E LR + A++
Sbjct: 554 QRERAIEQLRNKTADI 569
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 1309 (465.8 bits), Expect = 1.4e-133, P = 1.4e-133
Identities = 260/540 (48%), Positives = 355/540 (65%)
Query: 1286 FDWDASEDTSVDYNSIYKERHQVQ-FFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAX 1344
F+WD+SEDTS DYN++Y ++ ++Q FG GN G + K + + + G +
Sbjct: 291 FEWDSSEDTSSDYNTLYTKKLEIQPQFGHGNFGGYE-KNNNNNGNHYNGNIYNNNNNNNN 349
Query: 1345 XXXXXXXXXXXXXXXXX-----XXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVP 1399
D HW++K L MT+RDW IF+ED++I+ KGG P
Sbjct: 350 NNNNNNNINNNNNGSMIGGKQISELPDTHWSKKPLKSMTKRDWHIFKEDFNISTKGGIAP 409
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+P+R W+E++LP EILE I ++GY +P+PIQ Q+IPI L RDI+G+AETGSGKT AF++
Sbjct: 410 NPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVI 469
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
P+L++I P++ + +AD GPYA++MAPTREL QQIE+ET F G R V +VGG S
Sbjct: 470 PMLIYISKQPRLTKDTEAD-GPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQS 528
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E+Q +++ GCEI+IATPGRL D LE RYLVLNQC YIVLDEAD MID+GFEP V +L
Sbjct: 529 IEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVL 588
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+ MP + LK +ED E K + YR T++F+ATMPP VE+L++ YLRRP T+
Sbjct: 589 DAMPSSFLK--SEDDEMAEK--QESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTIT 644
Query: 1640 IGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1698
IG GK +RI Q ++++ SE DK++ L +++ G P+IIFVN+KK D++A LE+
Sbjct: 645 IGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEEC 704
Query: 1699 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1758
+ LH G+ QEQRE AL K ++L+AT VA RGI + V+ VIN+D+ K+IED
Sbjct: 705 RVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIED 764
Query: 1759 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
YTHRIGRTGRAG GLA SF T D + YDLKQ++ S+ + P ELL HP +Q K G+
Sbjct: 765 YTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQILTSTN-NIVPIELLKHPSSQQKHGS 823
Score = 1273 (453.2 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 251/519 (48%), Positives = 343/519 (66%)
Query: 611 FDWDASEDTSVDYNSIYKERHQVQ-FFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAX 669
F+WD+SEDTS DYN++Y ++ ++Q FG GN G + K + + + G +
Sbjct: 291 FEWDSSEDTSSDYNTLYTKKLEIQPQFGHGNFGGYE-KNNNNNGNHYNGNIYNNNNNNNN 349
Query: 670 XXXXXXXXXXXXXXXXX-----XXWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVP 724
D HW++K L MT+RDW IF+ED++I+ KGG P
Sbjct: 350 NNNNNNNINNNNNGSMIGGKQISELPDTHWSKKPLKSMTKRDWHIFKEDFNISTKGGIAP 409
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+P+R W+E++LP EILE I ++GY +P+PIQ Q+IPI L RDI+G+AETGSGKT AF++
Sbjct: 410 NPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVI 469
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
P+L++I P++ + +AD GPYA++MAPTREL QQIE+ET F G R V +VGG S
Sbjct: 470 PMLIYISKQPRLTKDTEAD-GPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQS 528
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E+Q +++ GCEI+IATPGRL D LE RYLVLNQC YIVLDEAD MID+GFEP V +L
Sbjct: 529 IEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVL 588
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+ MP + LK +ED E K + YR T++F+ATMPP VE+L++ YLRRP T+
Sbjct: 589 DAMPSSFLK--SEDDEMAEK--QESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTIT 644
Query: 965 IGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL 1023
IG GK +RI Q ++++ SE DK++ L +++ G P+IIFVN+KK D++A LE+
Sbjct: 645 IGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEEC 704
Query: 1024 GYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIED 1083
+ LH G+ QEQRE AL K ++L+AT VA RGI + V+ VIN+D+ K+IED
Sbjct: 705 RVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIED 764
Query: 1084 YTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
YTHRIGRTGRAG GLA SF T D + YDLKQ++ S+
Sbjct: 765 YTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQILTST 803
Score = 593 (213.8 bits), Expect = 2.2e-63, Sum P(2) = 2.2e-63
Identities = 134/290 (46%), Positives = 182/290 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++GY +P+PIQ Q+IPI L RDI+G+AETGSGKT AF++P+L++I P++ + +A
Sbjct: 428 IRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEA 487
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GPYA++MAPTREL QQIE+ET F G R V +VGG S E+Q +++ GCEI+IAT
Sbjct: 488 D-GPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIAT 546
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D LE RYLVLNQC YIVLDEAD MID+GFEP V +L+ MP + LK +ED E
Sbjct: 547 PGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLK--SEDDEMA 604
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLK-PDTEDAEDENKLLANYNSKKK 240
K + YR T++F+ATMPP ++E + L+ P T + K++ +
Sbjct: 605 EK--QESDRSHIYRTTILFSATMPP--LVEKLSKKYLRRPCTITIGEAGKVV------DR 654
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE 290
RQTV+F + E L + P I V K + + I +L E
Sbjct: 655 IRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKK-KHCDIIAPVLEE 703
Score = 306 (112.8 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 65/155 (41%), Positives = 97/155 (62%)
Query: 209 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 268
+L+ MP + LK +ED E K + YR T++F+ATMPP VE+L++ YLRRP T
Sbjct: 587 VLDAMPSSFLK--SEDDEMAEK--QESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCT 642
Query: 269 VYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
+ IG GK +RI Q ++++ SE DK++ L +++ G P+IIFVN+KK D++A LE
Sbjct: 643 ITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLE 702
Query: 328 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+ + LH G+ QEQRE AL K ++L+A
Sbjct: 703 ECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIA 737
Score = 125 (49.1 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGRAG GLA SF T D + YDLKQ++ S+ + P ELL HP +Q K G+
Sbjct: 772 TGRAGSAGLASSFITDKDVEIMYDLKQILTSTN-NIVPIELLKHPSSQQKHGS 823
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 927 (331.4 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 188/440 (42%), Positives = 280/440 (63%)
Query: 690 DDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYA 749
+ HWT K+L+EMT+RDWRIF+EDY+IT KG +P+P+R W E S+ +++ II ++GY
Sbjct: 130 ESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYE 189
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARMEDADQGPYA 808
EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E P
Sbjct: 190 EPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVG 249
Query: 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLI 867
+I+APTRELA QI +E KF LG + + ++GG ++ ++ + G +++ATPGRL+
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 868 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927
D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 310 DSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRI------ 363
Query: 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS---- 983
++ +K R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS
Sbjct: 364 -FHLEK--RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATT 420
Query: 984 EQDKRKKLMEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
E K KL++++ R + P +IIF N K D L++ L N +HG K Q+ R
Sbjct: 421 EATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMR 480
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
E A+ + + ++L+ATDVA RGIDI +V++VINY M K ++Y HRIGRTGRAG G
Sbjct: 481 EQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGE 540
Query: 1100 AVSFCTKDDSHLFYDLKQMM 1119
+ +F + D+ +F LK+ +
Sbjct: 541 SFTFISDQDTEIFTPLKKFL 560
Score = 927 (331.4 bits), Expect = 4.4e-93, Sum P(2) = 4.4e-93
Identities = 188/440 (42%), Positives = 280/440 (63%)
Query: 1365 DDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYA 1424
+ HWT K+L+EMT+RDWRIF+EDY+IT KG +P+P+R W E S+ +++ II ++GY
Sbjct: 130 ESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYE 189
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARMEDADQGPYA 1483
EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E P
Sbjct: 190 EPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVG 249
Query: 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLI 1542
+I+APTRELA QI +E KF LG + + ++GG ++ ++ + G +++ATPGRL+
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 310 DSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRI------ 363
Query: 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS---- 1658
++ +K R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS
Sbjct: 364 -FHLEK--RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATT 420
Query: 1659 EQDKRKKLMEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
E K KL++++ R + P +IIF N K D L++ L N +HG K Q+ R
Sbjct: 421 EATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMR 480
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
E A+ + + ++L+ATDVA RGIDI +V++VINY M K ++Y HRIGRTGRAG G
Sbjct: 481 EQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGE 540
Query: 1775 AVSFCTKDDSHLFYDLKQMM 1794
+ +F + D+ +F LK+ +
Sbjct: 541 SFTFISDQDTEIFTPLKKFL 560
Score = 428 (155.7 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 90/208 (43%), Positives = 136/208 (65%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARME 59
II ++GY EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E
Sbjct: 182 IISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYE 241
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIV 118
P +I+APTRELA QI +E KF LG + + ++GG ++ ++ + G ++
Sbjct: 242 KISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLI 301
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 178
+ATPGRL+D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 302 VATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPP 206
++ +K R T+MFTAT+ P
Sbjct: 362 RI-------FHLEK--RSTMMFTATISP 380
Score = 190 (71.9 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 46/129 (35%), Positives = 69/129 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKRKKL 297
R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS E K KL
Sbjct: 369 RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATKFNKL 428
Query: 298 MEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK 353
++++ R + P +IIF N K D L++ L N +HG K Q+ RE A+ + +
Sbjct: 429 IKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFR 488
Query: 354 GGSKDILMA 362
++L+A
Sbjct: 489 NHESEVLIA 497
Score = 56 (24.8 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG G + +F + D+ +F LK+ +
Sbjct: 532 TGRAGNLGESFTFISDQDTEIFTPLKKFL 560
Score = 37 (18.1 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 611 FDWDASE-DTS 620
FDWD E DT+
Sbjct: 98 FDWDVEEEDTA 108
Score = 37 (18.1 bits), Expect = 4.4e-93, Sum P(2) = 4.4e-93
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 1286 FDWDASE-DTS 1295
FDWD E DT+
Sbjct: 98 FDWDVEEEDTA 108
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 927 (331.4 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 188/440 (42%), Positives = 280/440 (63%)
Query: 690 DDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYA 749
+ HWT K+L+EMT+RDWRIF+EDY+IT KG +P+P+R W E S+ +++ II ++GY
Sbjct: 130 ESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYE 189
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARMEDADQGPYA 808
EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E P
Sbjct: 190 EPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVG 249
Query: 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLI 867
+I+APTRELA QI +E KF LG + + ++GG ++ ++ + G +++ATPGRL+
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 868 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 927
D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 310 DSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRI------ 363
Query: 928 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS---- 983
++ +K R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS
Sbjct: 364 -FHLEK--RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATT 420
Query: 984 EQDKRKKLMEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
E K KL++++ R + P +IIF N K D L++ L N +HG K Q+ R
Sbjct: 421 EATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMR 480
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
E A+ + + ++L+ATDVA RGIDI +V++VINY M K ++Y HRIGRTGRAG G
Sbjct: 481 EQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGE 540
Query: 1100 AVSFCTKDDSHLFYDLKQMM 1119
+ +F + D+ +F LK+ +
Sbjct: 541 SFTFISDQDTEIFTPLKKFL 560
Score = 927 (331.4 bits), Expect = 4.4e-93, Sum P(2) = 4.4e-93
Identities = 188/440 (42%), Positives = 280/440 (63%)
Query: 1365 DDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYA 1424
+ HWT K+L+EMT+RDWRIF+EDY+IT KG +P+P+R W E S+ +++ II ++GY
Sbjct: 130 ESTHWTNKNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYE 189
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARMEDADQGPYA 1483
EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E P
Sbjct: 190 EPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVG 249
Query: 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIVIATPGRLI 1542
+I+APTRELA QI +E KF LG + + ++GG ++ ++ + G +++ATPGRL+
Sbjct: 250 LILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLV 309
Query: 1543 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLA 1602
D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 310 DSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGRI------ 363
Query: 1603 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS---- 1658
++ +K R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS
Sbjct: 364 -FHLEK--RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATT 420
Query: 1659 EQDKRKKLMEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
E K KL++++ R + P +IIF N K D L++ L N +HG K Q+ R
Sbjct: 421 EATKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMR 480
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
E A+ + + ++L+ATDVA RGIDI +V++VINY M K ++Y HRIGRTGRAG G
Sbjct: 481 EQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGE 540
Query: 1775 AVSFCTKDDSHLFYDLKQMM 1794
+ +F + D+ +F LK+ +
Sbjct: 541 SFTFISDQDTEIFTPLKKFL 560
Score = 428 (155.7 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 90/208 (43%), Positives = 136/208 (65%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPK-IARME 59
II ++GY EPT +QR +IP+ L+ RD++GVAETGSGKTLAFL+P+L +I S+ + + E
Sbjct: 182 IISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYE 241
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL-RLGCEIV 118
P +I+APTRELA QI +E KF LG + + ++GG ++ ++ + G ++
Sbjct: 242 KISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLI 301
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA 178
+ATPGRL+D +E + + L++C +V+DEADRMIDMGFE D+ K+L+ +P T D
Sbjct: 302 VATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPP 206
++ +K R T+MFTAT+ P
Sbjct: 362 RI-------FHLEK--RSTMMFTATISP 380
Score = 190 (71.9 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 46/129 (35%), Positives = 69/129 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKRKKL 297
R T+MFTAT+ P VE+L + YL P +YIG G+ + I Q LS E K KL
Sbjct: 369 RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATKFNKL 428
Query: 298 MEVLN---RGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLK 353
++++ R + P +IIF N K D L++ L N +HG K Q+ RE A+ + +
Sbjct: 429 IKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFR 488
Query: 354 GGSKDILMA 362
++L+A
Sbjct: 489 NHESEVLIA 497
Score = 56 (24.8 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG G + +F + D+ +F LK+ +
Sbjct: 532 TGRAGNLGESFTFISDQDTEIFTPLKKFL 560
Score = 37 (18.1 bits), Expect = 1.3e-96, Sum P(3) = 1.3e-96
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 611 FDWDASE-DTS 620
FDWD E DT+
Sbjct: 98 FDWDVEEEDTA 108
Score = 37 (18.1 bits), Expect = 4.4e-93, Sum P(2) = 4.4e-93
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 1286 FDWDASE-DTS 1295
FDWD E DT+
Sbjct: 98 FDWDVEEEDTA 108
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 548 (198.0 bits), Expect = 3.3e-89, Sum P(3) = 3.3e-89
Identities = 109/220 (49%), Positives = 156/220 (70%)
Query: 1373 SLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
++ MTE+D ++R + I+++G VP P++ +++A+ P ILE I K+G+ EPTPIQ Q
Sbjct: 135 TVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQ 194
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
P+ L+ RD+IG+AETGSGKTLA+LLP LV + + P++ + D GP +I+APTREL
Sbjct: 195 GWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ----DDGPIVLILAPTREL 250
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 1552
A QI+EE+ KFG G+R+ + GG + Q LR G EIVIATPGRLID+LE ++ L
Sbjct: 251 AVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNL 310
Query: 1553 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI V+ ++PD +
Sbjct: 311 KRVTYLVLDEADRMLDMGFEPQIRKI-----VSQIRPDRQ 345
Score = 548 (198.0 bits), Expect = 5.7e-88, Sum P(2) = 5.7e-88
Identities = 109/220 (49%), Positives = 156/220 (70%)
Query: 698 SLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
++ MTE+D ++R + I+++G VP P++ +++A+ P ILE I K+G+ EPTPIQ Q
Sbjct: 135 TVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQ 194
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
P+ L+ RD+IG+AETGSGKTLA+LLP LV + + P++ + D GP +I+APTREL
Sbjct: 195 GWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ----DDGPIVLILAPTREL 250
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877
A QI+EE+ KFG G+R+ + GG + Q LR G EIVIATPGRLID+LE ++ L
Sbjct: 251 AVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNL 310
Query: 878 NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI V+ ++PD +
Sbjct: 311 KRVTYLVLDEADRMLDMGFEPQIRKI-----VSQIRPDRQ 345
Score = 464 (168.4 bits), Expect = 5.4e-79, Sum P(2) = 5.4e-79
Identities = 94/175 (53%), Positives = 126/175 (72%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K+G+ EPTPIQ Q P+ L+ RD+IG+AETGSGKTLA+LLP LV + + P++ +
Sbjct: 180 IAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ---- 235
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP +I+APTRELA QI+EE+ KFG G+R+ + GG + Q LR G EIVIAT
Sbjct: 236 DDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIAT 295
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID+LE ++ L + TY+VLDEADRM+DMGFEP ++KI V+ ++PD +
Sbjct: 296 PGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKI-----VSQIRPDRQ 345
Score = 376 (137.4 bits), Expect = 3.3e-89, Sum P(3) = 3.3e-89
Identities = 78/198 (39%), Positives = 119/198 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT++++AT P VE LAR +LR P IGS K + I Q++ I+ +K +L+ +
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403
Query: 1670 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L + + ++IFV K+G D + + L G+ A +HG K Q +R+ L K G I
Sbjct: 404 LKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+ ATDVA RG+D+KD+ V+NYD ++EDY HRIGRTGRAG +G+A +F T D++
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
Query: 1789 DLKQMMISSPVSTCPPEL 1806
+L +++ + PP L
Sbjct: 524 ELVKILQEAG-QVVPPTL 540
Score = 373 (136.4 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 75/186 (40%), Positives = 115/186 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT++++AT P VE LAR +LR P IGS K + I Q++ I+ +K +L+ +
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403
Query: 995 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L + + ++IFV K+G D + + L G+ A +HG K Q +R+ L K G I
Sbjct: 404 LKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+ ATDVA RG+D+KD+ V+NYD ++EDY HRIGRTGRAG +G+A +F T D++
Sbjct: 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
Query: 1114 DLKQMM 1119
+L +++
Sbjct: 524 ELVKIL 529
Score = 188 (71.2 bits), Expect = 8.2e-63, Sum P(3) = 8.2e-63
Identities = 43/123 (34%), Positives = 68/123 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT++++AT P VE LAR +LR P IGS K + I Q++ I+ +K +L+ +
Sbjct: 344 RQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTL 403
Query: 301 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L + + ++IFV K+G D + + L G+ A +HG K Q +R+ L K G I
Sbjct: 404 LKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPI 463
Query: 360 LMA 362
+ A
Sbjct: 464 MTA 466
Score = 60 (26.2 bits), Expect = 8.2e-63, Sum P(3) = 8.2e-63
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG +G+A +F T D++ +L +++ + PP L
Sbjct: 501 TGRAGAKGMAFTFFTHDNAKFARELVKILQEAG-QVVPPTL 540
Score = 38 (18.4 bits), Expect = 3.3e-89, Sum P(3) = 3.3e-89
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDS 1143
GR G + +E +VS ++ +L + K + SP ++ +A+ +D S
Sbjct: 100 GRGGSSKRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDIS 154
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 502 (181.8 bits), Expect = 1.2e-82, Sum P(2) = 1.2e-82
Identities = 97/216 (44%), Positives = 151/216 (69%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
MT+ + +R+ IT++G +P PV+++++ P +LE ++K G+ EPTPIQ Q P+
Sbjct: 73 MTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
++ RD+IG+AETGSGKTL++LLP +V + + P +A + GP +++APTRELA QI
Sbjct: 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD----GPIVLVLAPTRELAVQI 188
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
++E +KFG+ I+T + GG+ + Q L+ G EIVIATPGRLID++E+ L + T
Sbjct: 189 QQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVT 248
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
Y+VLDEADRM+DMGF+P ++KI V++++PD +
Sbjct: 249 YLVLDEADRMLDMGFDPQIRKI-----VSHIRPDRQ 279
Score = 502 (181.8 bits), Expect = 1.2e-82, Sum P(2) = 1.2e-82
Identities = 97/216 (44%), Positives = 151/216 (69%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
MT+ + +R+ IT++G +P PV+++++ P +LE ++K G+ EPTPIQ Q P+
Sbjct: 73 MTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPM 132
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
++ RD+IG+AETGSGKTL++LLP +V + + P +A + GP +++APTRELA QI
Sbjct: 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD----GPIVLVLAPTRELAVQI 188
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
++E +KFG+ I+T + GG+ + Q L+ G EIVIATPGRLID++E+ L + T
Sbjct: 189 QQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVT 248
Query: 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
Y+VLDEADRM+DMGF+P ++KI V++++PD +
Sbjct: 249 YLVLDEADRMLDMGFDPQIRKI-----VSHIRPDRQ 279
Score = 435 (158.2 bits), Expect = 1.8e-75, Sum P(2) = 1.8e-75
Identities = 85/175 (48%), Positives = 126/175 (72%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G+ EPTPIQ Q P+ ++ RD+IG+AETGSGKTL++LLP +V + + P +A +
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD-- 171
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++APTRELA QI++E +KFG+ I+T + GG+ + Q L+ G EIVIAT
Sbjct: 172 --GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIAT 229
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID++E+ L + TY+VLDEADRM+DMGF+P ++KI V++++PD +
Sbjct: 230 PGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKI-----VSHIRPDRQ 279
Score = 372 (136.0 bits), Expect = 1.2e-82, Sum P(2) = 1.2e-82
Identities = 83/211 (39%), Positives = 123/211 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+ ++AT P VE+L++ +L P V IGS K I QIV ++SE K KL+++
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKL 337
Query: 1670 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L + +++F++ KKG D + + L G+ A ++HG K Q +R+ L+ + G I
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+ ATDVA RG+D+KDV VINYD S+EDY HRIGRTGRAG +G A +F T ++
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
Query: 1789 DLKQMMISSPVSTCPPEL--LNHPDAQHKPG 1817
+L ++ + P EL + A PG
Sbjct: 458 ELTNILQEAGQKVSP-ELASMGRSTAPPPPG 487
Score = 370 (135.3 bits), Expect = 2.0e-82, Sum P(2) = 2.0e-82
Identities = 77/186 (41%), Positives = 115/186 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+ ++AT P VE+L++ +L P V IGS K I QIV ++SE K KL+++
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKL 337
Query: 995 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L + +++F++ KKG D + + L G+ A ++HG K Q +R+ L+ + G I
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+ ATDVA RG+D+KDV VINYD S+EDY HRIGRTGRAG +G A +F T ++
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
Query: 1114 DLKQMM 1119
+L ++
Sbjct: 458 ELTNIL 463
Score = 192 (72.6 bits), Expect = 6.9e-59, Sum P(3) = 6.9e-59
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+ ++AT P VE+L++ +L P V IGS K I QIV ++SE K KL+++
Sbjct: 278 RQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKL 337
Query: 301 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L + +++F++ KKG D + + L G+ A ++HG K Q +R+ L+ + G I
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 360 LMA 362
+ A
Sbjct: 398 MTA 400
Score = 54 (24.1 bits), Expect = 3.9e-49, Sum P(2) = 3.9e-49
Identities = 26/116 (22%), Positives = 54/116 (46%)
Query: 1443 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARM-EDADQGPYAIIMAPTRELAQQIEEETN 1501
IIG ++ + + + ++ ++ Q K+ ++ ED G ++ T++ QI +
Sbjct: 306 IIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLR 365
Query: 1502 KFGTPLGIRTVLVVGGLSREEQGFRL---RLG-CEIVIATP--GRLIDVLENRYLV 1551
G P + + G S+ E+ + L R G I+ AT R +DV + +Y++
Sbjct: 366 MDGWP----ALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVI 417
Score = 54 (24.1 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 26/116 (22%), Positives = 54/116 (46%)
Query: 768 IIGVAETGSGKTLAFLLPLLVWIQSLPKIARM-EDADQGPYAIIMAPTRELAQQIEEETN 826
IIG ++ + + + ++ ++ Q K+ ++ ED G ++ T++ QI +
Sbjct: 306 IIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLR 365
Query: 827 KFGTPLGIRTVLVVGGLSREEQGFRL---RLG-CEIVIATP--GRLIDVLENRYLV 876
G P + + G S+ E+ + L R G I+ AT R +DV + +Y++
Sbjct: 366 MDGWP----ALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVI 417
Score = 48 (22.0 bits), Expect = 6.9e-59, Sum P(3) = 6.9e-59
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL--LNHPDAQHKPG 1176
TGRAG +G A +F T ++ +L ++ + P EL + A PG
Sbjct: 435 TGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSP-ELASMGRSTAPPPPG 487
Score = 37 (18.1 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 1536 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 1595
AT + ++ L ++L N +++ +D + V I E L ED
Sbjct: 285 ATWPKEVEQLSKKFLY-NPYK-VIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIM 342
Query: 1596 DENKLLANYNSKK 1608
D +++L ++KK
Sbjct: 343 DGSRILVFLDTKK 355
Score = 37 (18.1 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 920
AT + ++ L ++L N +++ +D + V I E L ED
Sbjct: 285 ATWPKEVEQLSKKFLY-NPYK-VIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIM 342
Query: 921 DENKLLANYNSKK 933
D +++L ++KK
Sbjct: 343 DGSRILVFLDTKK 355
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 460 (167.0 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 97/215 (45%), Positives = 139/215 (64%)
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
++RD FR++ +T+KG +P P+ + EA P +L+ ++ G+ +PTPIQ Q P+
Sbjct: 102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMA 161
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
L RD+IG+A TGSGKTL++ LP +V I + P++ + D GP +++APTRELA QI+
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQL---QYGD-GPIVLVLAPTRELAVQIQ 217
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
E +KFG IR V GG + Q L G EI IATPGRLID+LE L + TY
Sbjct: 218 TECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTY 277
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 278 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 307
Score = 460 (167.0 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 97/215 (45%), Positives = 139/215 (64%)
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
++RD FR++ +T+KG +P P+ + EA P +L+ ++ G+ +PTPIQ Q P+
Sbjct: 102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMA 161
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
L RD+IG+A TGSGKTL++ LP +V I + P++ + D GP +++APTRELA QI+
Sbjct: 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQL---QYGD-GPIVLVLAPTRELAVQIQ 217
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
E +KFG IR V GG + Q L G EI IATPGRLID+LE L + TY
Sbjct: 218 TECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTY 277
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 278 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 307
Score = 386 (140.9 bits), Expect = 6.2e-68, Sum P(3) = 6.2e-68
Identities = 84/171 (49%), Positives = 113/171 (66%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +PTPIQ Q P+ L RD+IG+A TGSGKTL++ LP +V I + P++ + D GP
Sbjct: 146 GFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQL---QYGD-GP 201
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+++APTRELA QI+ E +KFG IR V GG + Q L G EI IATPGRL
Sbjct: 202 IVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRL 261
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
ID+LE L + TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 262 IDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 307
Score = 383 (139.9 bits), Expect = 2.6e-79, Sum P(2) = 2.6e-79
Identities = 84/200 (42%), Positives = 122/200 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V++L R YL P V IGS+ + I Q+V ++ E KR +L++
Sbjct: 306 RQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 365
Query: 1670 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
L + + +++F + K+ D + L G+ A +HG K Q +R+ L+ + G
Sbjct: 366 LESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKT 425
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
I+VATDVA RGID+K ++ VINYDM +IEDY HRIGRTGR G G A+SF T+ +S L
Sbjct: 426 SIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
Query: 1787 FYDLKQMMISSPVSTCPPEL 1806
DL ++M + T PPEL
Sbjct: 486 GGDLCKIMREAN-QTVPPEL 504
Score = 369 (135.0 bits), Expect = 7.8e-78, Sum P(2) = 7.8e-78
Identities = 79/188 (42%), Positives = 116/188 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V++L R YL P V IGS+ + I Q+V ++ E KR +L++
Sbjct: 306 RQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 365
Query: 995 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
L + + +++F + K+ D + L G+ A +HG K Q +R+ L+ + G
Sbjct: 366 LESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKT 425
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
I+VATDVA RGID+K ++ VINYDM +IEDY HRIGRTGR G G A+SF T+ +S L
Sbjct: 426 SIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKL 485
Query: 1112 FYDLKQMM 1119
DL ++M
Sbjct: 486 GGDLCKIM 493
Score = 175 (66.7 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 40/125 (32%), Positives = 69/125 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V++L R YL P V IGS+ + I Q+V ++ E KR +L++
Sbjct: 306 RQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKH 365
Query: 301 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L + + +++F + K+ D + L G+ A +HG K Q +R+ L+ + G
Sbjct: 366 LESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKT 425
Query: 358 DILMA 362
I++A
Sbjct: 426 SIMVA 430
Score = 76 (31.8 bits), Expect = 2.5e-50, Sum P(4) = 2.5e-50
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGR G G A+SF T+ +S L DL ++M + T PPEL
Sbjct: 465 TGRGGASGTAISFFTEGNSKLGGDLCKIMREAN-QTVPPEL 504
Score = 39 (18.8 bits), Expect = 1.7e-46, Sum P(4) = 1.7e-46
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 631 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 665
H++ GRG +G I SK G++ + R
Sbjct: 460 HRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMR 494
Score = 39 (18.8 bits), Expect = 1.7e-46, Sum P(4) = 1.7e-46
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1306 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 1340
H++ GRG +G I SK G++ + R
Sbjct: 460 HRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMR 494
Score = 38 (18.4 bits), Expect = 6.2e-68, Sum P(3) = 6.2e-68
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+M++AT P
Sbjct: 306 RQTLMWSATWP 316
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 512 (185.3 bits), Expect = 9.3e-79, Sum P(2) = 9.3e-79
Identities = 107/219 (48%), Positives = 147/219 (67%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
+ + T+ + FR + +T+KG +VP P+ + +A P +++ I G+ PTPIQ QA
Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQA 414
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
PI L+ RDIIG+A+TGSGKTLAFLLP +V I + P + R +D GP +++APTRELA
Sbjct: 415 WPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQP-VLREDD---GPIVLVLAPTRELA 470
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QI+EETNKFG I V GG S+ Q L+ G EIVIATPGRLID+LE+ L
Sbjct: 471 LQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLR 530
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 531 RVTYLVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 564
Score = 512 (185.3 bits), Expect = 9.3e-79, Sum P(2) = 9.3e-79
Identities = 107/219 (48%), Positives = 147/219 (67%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
+ + T+ + FR + +T+KG +VP P+ + +A P +++ I G+ PTPIQ QA
Sbjct: 355 VSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQA 414
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
PI L+ RDIIG+A+TGSGKTLAFLLP +V I + P + R +D GP +++APTRELA
Sbjct: 415 WPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQP-VLREDD---GPIVLVLAPTRELA 470
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QI+EETNKFG I V GG S+ Q L+ G EIVIATPGRLID+LE+ L
Sbjct: 471 LQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLR 530
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 531 RVTYLVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 564
Score = 448 (162.8 bits), Expect = 6.9e-71, Sum P(3) = 6.9e-71
Identities = 95/171 (55%), Positives = 121/171 (70%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ PTPIQ QA PI L+ RDIIG+A+TGSGKTLAFLLP +V I + P + R +D GP
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQP-VLREDD---GP 458
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+++APTRELA QI+EETNKFG I V GG S+ Q L+ G EIVIATPGRL
Sbjct: 459 IVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRL 518
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
ID+LE+ L + TY+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 519 IDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 564
Score = 362 (132.5 bits), Expect = 9.3e-79, Sum P(2) = 9.3e-79
Identities = 77/200 (38%), Positives = 117/200 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+MF+AT P V+ LA +L V+IGS + QIV + + +K+++++
Sbjct: 563 RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSF 622
Query: 1670 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L G + VI+F +KG D L + L+ G+ + +HG K Q +R+ L+ K G I
Sbjct: 623 LGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPI 682
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
++ATDVA RG+DIKD+ V+NYD +IE Y HRIGRT RAG G++ S T D++ L
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 1789 DLKQMMISSPVSTCPPELLN 1808
+L +++ + P EL N
Sbjct: 743 ELIKVLTEAK-QKIPIELSN 761
Score = 357 (130.7 bits), Expect = 3.1e-78, Sum P(2) = 3.1e-78
Identities = 73/186 (39%), Positives = 112/186 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+MF+AT P V+ LA +L V+IGS + QIV + + +K+++++
Sbjct: 563 RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSF 622
Query: 995 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L G + VI+F +KG D L + L+ G+ + +HG K Q +R+ L+ K G I
Sbjct: 623 LGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPI 682
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
++ATDVA RG+DIKD+ V+NYD +IE Y HRIGRT RAG G++ S T D++ L
Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLAN 742
Query: 1114 DLKQMM 1119
+L +++
Sbjct: 743 ELIKVL 748
Score = 186 (70.5 bits), Expect = 1.5e-53, Sum P(4) = 1.5e-53
Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+MF+AT P V+ LA +L V+IGS + QIV + + +K+++++
Sbjct: 563 RQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSF 622
Query: 301 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L G + VI+F +KG D L + L+ G+ + +HG K Q +R+ L+ K G I
Sbjct: 623 LGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPI 682
Query: 360 LMA 362
++A
Sbjct: 683 MIA 685
Score = 53 (23.7 bits), Expect = 1.5e-53, Sum P(4) = 1.5e-53
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
T RAG G++ S T D++ L +L +++ + P EL N
Sbjct: 720 TARAGASGVSYSLLTTDNARLANELIKVLTEAK-QKIPIELSN 761
Score = 43 (20.2 bits), Expect = 6.9e-71, Sum P(3) = 6.9e-71
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 563 RQTLMFSATWP 573
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 446 (162.1 bits), Expect = 8.1e-78, Sum P(2) = 8.1e-78
Identities = 95/221 (42%), Positives = 140/221 (63%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+S+ + ++ + FR++ +TI G +P P+ + EA P +L ++ G+ +PT IQ
Sbjct: 82 ESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQC 141
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q P+ L RD++G+A TGSGKTL++ LP +V I + P +A GP +++APTRE
Sbjct: 142 QGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLA----PGDGPIVLVLAPTRE 197
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
LA QI+ E +KFG IR V GG+ + +Q L G EIVIATPGRLID+LE
Sbjct: 198 LAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTN 257
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 258 LKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 293
Score = 446 (162.1 bits), Expect = 8.1e-78, Sum P(2) = 8.1e-78
Identities = 95/221 (42%), Positives = 140/221 (63%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+S+ + ++ + FR++ +TI G +P P+ + EA P +L ++ G+ +PT IQ
Sbjct: 82 ESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQC 141
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q P+ L RD++G+A TGSGKTL++ LP +V I + P +A GP +++APTRE
Sbjct: 142 QGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLA----PGDGPIVLVLAPTRE 197
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
LA QI+ E +KFG IR V GG+ + +Q L G EIVIATPGRLID+LE
Sbjct: 198 LAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTN 257
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 258 LKRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 293
Score = 390 (142.3 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 113/316 (35%), Positives = 171/316 (54%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +PT IQ Q P+ L RD++G+A TGSGKTL++ LP +V I + P +A GP
Sbjct: 132 GFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLA----PGDGP 187
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+++APTRELA QI+ E +KFG IR V GG+ + +Q L G EIVIATPGRL
Sbjct: 188 IVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRL 247
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTN-LKPDTEDAEDENK 183
ID+LE L + TY+VLDEADRM+DMGFEP ++KI++ + P L ++ +
Sbjct: 248 IDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQ 307
Query: 184 LLANYNSKKKYRQ--TVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
L A+Y + Q ++ +A+ +I+E + D E + NK L + +Y
Sbjct: 308 LAADYLNDPIQVQVGSLELSASHNITQIVEVVS------DFEKRDRLNKYLETASQDNEY 361
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE-QDKRKKLM-- 298
+ T++F +T + YLR + G +R ++L E ++ R +M
Sbjct: 362 K-TLIFASTKRMCDD--ITKYLREDGWPALAIHGDKDQRERD--WVLQEFRNGRSPIMVA 416
Query: 299 -EVLNRGVKKPVIIFV 313
+V RG+ I +V
Sbjct: 417 TDVAARGIDVKGINYV 432
Score = 383 (139.9 bits), Expect = 8.1e-78, Sum P(2) = 8.1e-78
Identities = 85/203 (41%), Positives = 123/203 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V++LA YL P V +GS+ + I QIV ++S+ +KR +L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E ++ + +IF + K+ D + K L + G+ A +HG K Q +R+ L + G
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
I+VATDVA RGID+K ++ VINYDM +IEDY HRIGRTGRAG G A+SF T+ + L
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGL 471
Query: 1787 FYDLKQMMISSPVSTCPPELLNH 1809
L +M + PPELL +
Sbjct: 472 GAKLISIMREAN-QNIPPELLKY 493
Score = 368 (134.6 bits), Expect = 3.1e-76, Sum P(2) = 3.1e-76
Identities = 80/188 (42%), Positives = 116/188 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V++LA YL P V +GS+ + I QIV ++S+ +KR +L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E ++ + +IF + K+ D + K L + G+ A +HG K Q +R+ L + G
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
I+VATDVA RGID+K ++ VINYDM +IEDY HRIGRTGRAG G A+SF T+ + L
Sbjct: 412 PIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGL 471
Query: 1112 FYDLKQMM 1119
L +M
Sbjct: 472 GAKLISIM 479
Score = 181 (68.8 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V++LA YL P V +GS+ + I QIV ++S+ +KR +L
Sbjct: 292 RQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY 351
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E ++ + +IF + K+ D + K L + G+ A +HG K Q +R+ L + G
Sbjct: 352 LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRS 411
Query: 358 DILMA 362
I++A
Sbjct: 412 PIMVA 416
Score = 69 (29.3 bits), Expect = 9.3e-45, Sum P(2) = 9.3e-45
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1168
TGRAG G A+SF T+ + L L +M + PPELL +
Sbjct: 451 TGRAGATGTAISFFTEQNKGLGAKLISIMREAN-QNIPPELLKY 493
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 455 (165.2 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 91/208 (43%), Positives = 137/208 (65%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+R++ I + G VP PV ++EA P +L+ ++++G+ PTPIQ+QA P+ + RD++
Sbjct: 104 YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G++ TGSGKTL++ LP +V I + P ++ GP +++APTRELA QI++E KFG
Sbjct: 164 GISATGSGKTLSYCLPAIVHINAQPLLS----PGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
IR V GG+ R Q L G EI IATPGRL+D+L++ L + TY+VLDEAD
Sbjct: 220 KSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEAD 279
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 280 RMLDMGFEPQIRKIVD-----QIRPDRQ 302
Score = 455 (165.2 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 91/208 (43%), Positives = 137/208 (65%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+R++ I + G VP PV ++EA P +L+ ++++G+ PTPIQ+QA P+ + RD++
Sbjct: 104 YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G++ TGSGKTL++ LP +V I + P ++ GP +++APTRELA QI++E KFG
Sbjct: 164 GISATGSGKTLSYCLPAIVHINAQPLLS----PGDGPIVLVLAPTRELAVQIQQECTKFG 219
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
IR V GG+ R Q L G EI IATPGRL+D+L++ L + TY+VLDEAD
Sbjct: 220 KSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEAD 279
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 280 RMLDMGFEPQIRKIVD-----QIRPDRQ 302
Score = 397 (144.8 bits), Expect = 5.7e-70, Sum P(3) = 5.7e-70
Identities = 80/175 (45%), Positives = 118/175 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++++G+ PTPIQ+QA P+ + RD++G++ TGSGKTL++ LP +V I + P ++
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLS----P 192
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++APTRELA QI++E KFG IR V GG+ R Q L G EI IAT
Sbjct: 193 GDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIAT 252
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRL+D+L++ L + TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 253 PGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 302
Score = 368 (134.6 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 82/200 (41%), Positives = 119/200 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQTVMF+AT P V+RLAR YL V +GS+ + I+QIV ++ DKR +L +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKD 360
Query: 1670 LNRGVK---KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ +K V+IF K+ AD + + L + G+ A +HG K Q++R+ LN + G
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
I+VATDVA RGID+K ++ V NYD + EDY HRIGRTGRAG +G A ++ T D++
Sbjct: 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480
Query: 1787 FYDLKQMMISSPVSTCPPEL 1806
+L ++ S P+L
Sbjct: 481 ARELVSIL-SEAKQDIDPKL 499
Score = 367 (134.2 bits), Expect = 4.3e-77, Sum P(2) = 4.3e-77
Identities = 78/178 (43%), Positives = 111/178 (62%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQTVMF+AT P V+RLAR YL V +GS+ + I+QIV ++ DKR +L +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKD 360
Query: 995 LNRGVK---KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ +K V+IF K+ AD + + L + G+ A +HG K Q++R+ LN + G
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
I+VATDVA RGID+K ++ V NYD + EDY HRIGRTGRAG +G A ++ T D++
Sbjct: 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478
Score = 200 (75.5 bits), Expect = 2.2e-52, Sum P(3) = 2.2e-52
Identities = 47/125 (37%), Positives = 72/125 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQTVMF+AT P V+RLAR YL V +GS+ + I+QIV ++ DKR +L +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKD 360
Query: 301 LNRGVK---KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ +K V+IF K+ AD + + L + G+ A +HG K Q++R+ LN + G
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 358 DILMA 362
I++A
Sbjct: 421 PIMVA 425
Score = 53 (23.7 bits), Expect = 4.9e-44, Sum P(2) = 4.9e-44
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRA----GKEGLAVSFCTKDDSHLF-YDL----KQMMI 1120
++ I+ D A+ D+ RTG++ + + K +H+F YD + +
Sbjct: 396 ALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
Query: 1121 SSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG +G A ++ T D++ +L ++ S P+L
Sbjct: 456 RIGRTGRAGAKGTAYTYFTSDNAKQARELVSIL-SEAKQDIDPKL 499
Score = 46 (21.3 bits), Expect = 5.7e-70, Sum P(3) = 5.7e-70
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQTVMF+AT P
Sbjct: 301 RQTVMFSATWP 311
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 453 (164.5 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 96/215 (44%), Positives = 136/215 (63%)
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
++R+ FR+ +T++G VP PV + EA P +L ++ G+ +PT IQ Q P+
Sbjct: 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
L RD++G+AETGSGKTL++ LP +V I + P +A GP +I+APTRELA QI+
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLA----PGDGPIVLILAPTRELAVQIQ 230
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
E +KFG IR V GG+ + Q L G E+ IATPGRLID+LE L + TY
Sbjct: 231 AEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTY 290
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 291 LVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 320
Score = 453 (164.5 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 96/215 (44%), Positives = 136/215 (63%)
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
++R+ FR+ +T++G VP PV + EA P +L ++ G+ +PT IQ Q P+
Sbjct: 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
L RD++G+AETGSGKTL++ LP +V I + P +A GP +I+APTRELA QI+
Sbjct: 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLA----PGDGPIVLILAPTRELAVQIQ 230
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
E +KFG IR V GG+ + Q L G E+ IATPGRLID+LE L + TY
Sbjct: 231 AEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTY 290
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 291 LVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 320
Score = 392 (143.0 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 83/171 (48%), Positives = 112/171 (65%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +PT IQ Q P+ L RD++G+AETGSGKTL++ LP +V I + P +A GP
Sbjct: 159 GFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLA----PGDGP 214
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+I+APTRELA QI+ E +KFG IR V GG+ + Q L G E+ IATPGRL
Sbjct: 215 IVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRL 274
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
ID+LE L + TY+VLDEADRM+DMGFEP ++KI ++ ++PD +
Sbjct: 275 IDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI-----ISQIRPDRQ 320
Score = 370 (135.3 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 82/186 (44%), Positives = 117/186 (62%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT M++AT P V +LA +L V IGS+ RI QIV ++SE +KR ++++
Sbjct: 319 RQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKH 378
Query: 995 L-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
L NRG K ++F K+ AD + + L + G+ A ++HG K Q++R+ LN K G
Sbjct: 379 LEKIMENRGNK--CLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 436
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
I+VATDVA RGID++D++ VINYD + EDY HRIGRTGRAG +G A++F T D++
Sbjct: 437 KSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNA 496
Query: 1110 HLFYDL 1115
DL
Sbjct: 497 KQARDL 502
Score = 370 (135.3 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 82/186 (44%), Positives = 117/186 (62%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT M++AT P V +LA +L V IGS+ RI QIV ++SE +KR ++++
Sbjct: 319 RQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKH 378
Query: 1670 L-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
L NRG K ++F K+ AD + + L + G+ A ++HG K Q++R+ LN K G
Sbjct: 379 LEKIMENRGNK--CLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 436
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
I+VATDVA RGID++D++ VINYD + EDY HRIGRTGRAG +G A++F T D++
Sbjct: 437 KSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNA 496
Query: 1785 HLFYDL 1790
DL
Sbjct: 497 KQARDL 502
Score = 186 (70.5 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 47/127 (37%), Positives = 73/127 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT M++AT P V +LA +L V IGS+ RI QIV ++SE +KR ++++
Sbjct: 319 RQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKH 378
Query: 301 L-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 355
L NRG K ++F K+ AD + + L + G+ A ++HG K Q++R+ LN K G
Sbjct: 379 LEKIMENRGNK--CLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTG 436
Query: 356 SKDILMA 362
I++A
Sbjct: 437 KSPIMVA 443
Score = 58 (25.5 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG +G A++F T D++ DL
Sbjct: 478 TGRAGAKGTAITFFTTDNAKQARDL 502
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 746 (267.7 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 164/414 (39%), Positives = 241/414 (58%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
ED + GG VP PV + + L + I + Y PTP+QR AIPI L RD++
Sbjct: 135 EDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFGT 830
A+TGSGKT AF P++ I + R + P+A+I++PTRELA QI +E KF
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890
G++ V+ GG +Q L GC+I++ATPGRL D+LE + + ++ LDEADR
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 314
Query: 891 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE 950
M+DMGFEP ++KI+E M ++ P + RQT++F+AT P ++
Sbjct: 315 MLDMGFEPQIRKIVEQM---DMPP------------------RGVRQTMLFSATFPSQIQ 353
Query: 951 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-----RGVKKPVII 1005
RLA ++ + +G VG T+ I Q V + E DKR LM++L+ + + ++
Sbjct: 354 RLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLV 413
Query: 1006 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065
FV K+GAD L L + A ++HG + Q++RE+AL S K G ILVATDVA RG+D
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLD 473
Query: 1066 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
I V+ V+N+D+ I+DY HRIGRTGRAGK G+A +F ++++ L L ++M
Sbjct: 474 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELM 527
Score = 746 (267.7 bits), Expect = 1.0e-72, P = 1.0e-72
Identities = 164/414 (39%), Positives = 241/414 (58%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
ED + GG VP PV + + L + I + Y PTP+QR AIPI L RD++
Sbjct: 135 EDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 194
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFGT 1505
A+TGSGKT AF P++ I + R + P+A+I++PTRELA QI +E KF
Sbjct: 195 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 254
Query: 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565
G++ V+ GG +Q L GC+I++ATPGRL D+LE + + ++ LDEADR
Sbjct: 255 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 314
Query: 1566 MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVE 1625
M+DMGFEP ++KI+E M ++ P + RQT++F+AT P ++
Sbjct: 315 MLDMGFEPQIRKIVEQM---DMPP------------------RGVRQTMLFSATFPSQIQ 353
Query: 1626 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-----RGVKKPVII 1680
RLA ++ + +G VG T+ I Q V + E DKR LM++L+ + + ++
Sbjct: 354 RLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLV 413
Query: 1681 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740
FV K+GAD L L + A ++HG + Q++RE+AL S K G ILVATDVA RG+D
Sbjct: 414 FVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLD 473
Query: 1741 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
I V+ V+N+D+ I+DY HRIGRTGRAGK G+A +F ++++ L L ++M
Sbjct: 474 IPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELM 527
Score = 376 (137.4 bits), Expect = 1.9e-49, Sum P(4) = 1.9e-49
Identities = 75/166 (45%), Positives = 105/166 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + Y PTP+QR AIPI L RD++ A+TGSGKT AF P++ I + R +
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGS 225
Query: 62 DQG-PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P+A+I++PTRELA QI +E KF G++ V+ GG +Q L GC+I++A
Sbjct: 226 RAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVA 285
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
TPGRL D+LE + + ++ LDEADRM+DMGFEP ++KI+E M
Sbjct: 286 TPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 331
Score = 202 (76.2 bits), Expect = 1.9e-49, Sum P(4) = 1.9e-49
Identities = 46/126 (36%), Positives = 73/126 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT P ++RLA ++ + +G VG T+ I Q V + E DKR LM++L
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL 398
Query: 302 N-----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
+ + + ++FV K+GAD L L + A ++HG + Q++RE+AL S K G
Sbjct: 399 HAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGR 458
Query: 357 KDILMA 362
IL+A
Sbjct: 459 TPILVA 464
Score = 64 (27.6 bits), Expect = 2.6e-76, Sum P(2) = 2.6e-76
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAGK G+A +F ++++ L L ++M
Sbjct: 499 TGRAGKSGIATAFFNENNAQLARSLAELM 527
Score = 41 (19.5 bits), Expect = 1.9e-49, Sum P(4) = 1.9e-49
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT++F+AT P
Sbjct: 339 RQTMLFSATFP 349
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 456 (165.6 bits), Expect = 3.0e-76, Sum P(2) = 3.0e-76
Identities = 92/195 (47%), Positives = 127/195 (65%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
FR ++S+ ++G VP PV + EA P +++ ++ G+ PT IQ Q P+ L RD++
Sbjct: 107 FRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVV 166
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+AETGSGKTL + LP +V I + P +A GP +I+APTRELA QI+ E +KFG
Sbjct: 167 GIAETGSGKTLTYCLPAIVHINAQPLLA----PGDGPIVLILAPTRELAVQIQAEISKFG 222
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
IR V GG+ + Q L G E+ IATPGRLID+LE+ L + TY+VLDEAD
Sbjct: 223 KSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEAD 282
Query: 890 RMIDMGFEPDVQKIL 904
RM+DMGFEP ++KI+
Sbjct: 283 RMLDMGFEPQIRKII 297
Score = 456 (165.6 bits), Expect = 3.0e-76, Sum P(2) = 3.0e-76
Identities = 92/195 (47%), Positives = 127/195 (65%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
FR ++S+ ++G VP PV + EA P +++ ++ G+ PT IQ Q P+ L RD++
Sbjct: 107 FRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVV 166
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+AETGSGKTL + LP +V I + P +A GP +I+APTRELA QI+ E +KFG
Sbjct: 167 GIAETGSGKTLTYCLPAIVHINAQPLLA----PGDGPIVLILAPTRELAVQIQAEISKFG 222
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
IR V GG+ + Q L G E+ IATPGRLID+LE+ L + TY+VLDEAD
Sbjct: 223 KSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEAD 282
Query: 1565 RMIDMGFEPDVQKIL 1579
RM+DMGFEP ++KI+
Sbjct: 283 RMLDMGFEPQIRKII 297
Score = 389 (142.0 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 81/158 (51%), Positives = 105/158 (66%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ PT IQ Q P+ L RD++G+AETGSGKTL + LP +V I + P +A GP
Sbjct: 144 GFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLA----PGDGP 199
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+I+APTRELA QI+ E +KFG IR V GG+ + Q L G E+ IATPGRL
Sbjct: 200 IVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRL 259
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
ID+LE+ L + TY+VLDEADRM+DMGFEP ++KI+
Sbjct: 260 IDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKII 297
Score = 358 (131.1 bits), Expect = 3.0e-76, Sum P(2) = 3.0e-76
Identities = 79/186 (42%), Positives = 117/186 (62%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +A +L+ V IGS+ RI QIV ++SE +KR ++
Sbjct: 304 RQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRH 363
Query: 992 MEVLNRGV--KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
ME + G K ++IFV K+ AD + + L + G+ A ++HG K Q +R+ L+ K G
Sbjct: 364 MEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTG 423
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
I+VATDVA RGID+++++ V+NYD + EDY HRIGRTGRAG +G A++F T ++S
Sbjct: 424 KSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 483
Query: 1110 HLFYDL 1115
DL
Sbjct: 484 KQARDL 489
Score = 358 (131.1 bits), Expect = 3.0e-76, Sum P(2) = 3.0e-76
Identities = 79/186 (42%), Positives = 117/186 (62%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +A +L+ V IGS+ RI QIV ++SE +KR ++
Sbjct: 304 RQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRH 363
Query: 1667 MEVLNRGV--KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
ME + G K ++IFV K+ AD + + L + G+ A ++HG K Q +R+ L+ K G
Sbjct: 364 MEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTG 423
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
I+VATDVA RGID+++++ V+NYD + EDY HRIGRTGRAG +G A++F T ++S
Sbjct: 424 KSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENS 483
Query: 1785 HLFYDL 1790
DL
Sbjct: 484 KQARDL 489
Score = 183 (69.5 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 46/127 (36%), Positives = 73/127 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +A +L+ V IGS+ RI QIV ++SE +KR ++
Sbjct: 304 RQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRH 363
Query: 298 MEVLNRGV--KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 355
ME + G K ++IFV K+ AD + + L + G+ A ++HG K Q +R+ L+ K G
Sbjct: 364 MEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTG 423
Query: 356 SKDILMA 362
I++A
Sbjct: 424 KSPIMVA 430
Score = 57 (25.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG +G A++F T ++S DL
Sbjct: 465 TGRAGAKGTAITFFTTENSKQARDL 489
Score = 38 (18.4 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+M++AT P
Sbjct: 304 RQTLMWSATWP 314
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 484 (175.4 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 100/208 (48%), Positives = 137/208 (65%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
F ITIKG +VP P ++E P ++ I K G+A+PT IQ Q PI + RD++
Sbjct: 139 FLTSNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLV 198
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
GVA+TGSGKTLA++LP +V I + P R+E D GP A+++APTRELAQQI++ +FG
Sbjct: 199 GVAQTGSGKTLAYVLPAVVHINNQP---RLERGD-GPIALVLAPTRELAQQIQQVAIEFG 254
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+ +R + GG + +Q L G EIVIATPGRLID LE L +CTY+VLDEAD
Sbjct: 255 SNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEAD 314
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 315 RMLDMGFEPQIRKIMQ-----QIRPDRQ 337
Score = 484 (175.4 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 100/208 (48%), Positives = 137/208 (65%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
F ITIKG +VP P ++E P ++ I K G+A+PT IQ Q PI + RD++
Sbjct: 139 FLTSNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLV 198
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
GVA+TGSGKTLA++LP +V I + P R+E D GP A+++APTRELAQQI++ +FG
Sbjct: 199 GVAQTGSGKTLAYVLPAVVHINNQP---RLERGD-GPIALVLAPTRELAQQIQQVAIEFG 254
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+ +R + GG + +Q L G EIVIATPGRLID LE L +CTY+VLDEAD
Sbjct: 255 SNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEAD 314
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 315 RMLDMGFEPQIRKIMQ-----QIRPDRQ 337
Score = 434 (157.8 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 89/175 (50%), Positives = 121/175 (69%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K G+A+PT IQ Q PI + RD++GVA+TGSGKTLA++LP +V I + P R+E
Sbjct: 172 IRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQP---RLERG 228
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+++APTRELAQQI++ +FG+ +R + GG + +Q L G EIVIAT
Sbjct: 229 D-GPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIAT 287
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID LE L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 288 PGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQ-----QIRPDRQ 337
Score = 363 (132.8 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 80/202 (39%), Positives = 117/202 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQ +M++AT P V +LA +L V IGS+ I QIV + E +K KL+++
Sbjct: 336 RQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKL 395
Query: 1670 L---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
L + + IIFV KK D + + + + G+ AC +HG K Q++R+ L+S + G
Sbjct: 396 LTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
ILVATDVA RG+D+ DV VINYD + EDY HRIGRTGR+ G A + T +++
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 1787 FYDLKQMMISSPVSTCPPELLN 1808
DL Q++ + T P+L+N
Sbjct: 516 ANDLIQVLREAN-QTINPKLMN 536
Score = 354 (129.7 bits), Expect = 2.0e-74, Sum P(2) = 2.0e-74
Identities = 76/188 (40%), Positives = 110/188 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQ +M++AT P V +LA +L V IGS+ I QIV + E +K KL+++
Sbjct: 336 RQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKL 395
Query: 995 L---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
L + + IIFV KK D + + + + G+ AC +HG K Q++R+ L+S + G
Sbjct: 396 LTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
ILVATDVA RG+D+ DV VINYD + EDY HRIGRTGR+ G A + T +++
Sbjct: 456 SILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANK 515
Query: 1112 FYDLKQMM 1119
DL Q++
Sbjct: 516 ANDLIQVL 523
Score = 192 (72.6 bits), Expect = 8.5e-52, Sum P(3) = 8.5e-52
Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQ +M++AT P V +LA +L V IGS+ I QIV + E +K KL+++
Sbjct: 336 RQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKL 395
Query: 301 L---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L + + IIFV KK D + + + + G+ AC +HG K Q++R+ L+S + G
Sbjct: 396 LTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRH 455
Query: 358 DILMA 362
IL+A
Sbjct: 456 SILVA 460
Score = 48 (22.0 bits), Expect = 8.5e-52, Sum P(3) = 8.5e-52
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
TGR+ G A + T +++ DL Q++ + T P+L+N
Sbjct: 495 TGRSNNTGTAYTLFTHSNANKANDLIQVLREAN-QTINPKLMN 536
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 493 (178.6 bits), Expect = 6.3e-75, Sum P(2) = 6.3e-75
Identities = 101/221 (45%), Positives = 145/221 (65%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+S+ MTE++ +R+ I + G V PV+ +++ ++I+ I+K Y +PT IQ
Sbjct: 197 ESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQC 256
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
QA+PI L RD+IG+A+TGSGKT AF+LP++V I P++ R D+GP +I APTRE
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR----DEGPIGVICAPTRE 312
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
LA QI E KF G+R V GG+S+ EQ L+ GCEIV+ATPGRLID+L+ + L
Sbjct: 313 LAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALT 372
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ + +Y+VLDEADRM D+GFEP V+ I V ++PD +
Sbjct: 373 MMRASYLVLDEADRMFDLGFEPQVRSI-----VGQIRPDRQ 408
Score = 493 (178.6 bits), Expect = 6.3e-75, Sum P(2) = 6.3e-75
Identities = 101/221 (45%), Positives = 145/221 (65%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+S+ MTE++ +R+ I + G V PV+ +++ ++I+ I+K Y +PT IQ
Sbjct: 197 ESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQC 256
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
QA+PI L RD+IG+A+TGSGKT AF+LP++V I P++ R D+GP +I APTRE
Sbjct: 257 QALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR----DEGPIGVICAPTRE 312
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
LA QI E KF G+R V GG+S+ EQ L+ GCEIV+ATPGRLID+L+ + L
Sbjct: 313 LAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALT 372
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ + +Y+VLDEADRM D+GFEP V+ I V ++PD +
Sbjct: 373 MMRASYLVLDEADRMFDLGFEPQVRSI-----VGQIRPDRQ 408
Score = 437 (158.9 bits), Expect = 2.6e-68, Sum P(3) = 2.6e-68
Identities = 90/175 (51%), Positives = 120/175 (68%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K Y +PT IQ QA+PI L RD+IG+A+TGSGKT AF+LP++V I P++ R
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR---- 298
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D+GP +I APTRELA QI E KF G+R V GG+S+ EQ L+ GCEIV+AT
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVAT 358
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID+L+ + L + + +Y+VLDEADRM D+GFEP V+ I V ++PD +
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSI-----VGQIRPDRQ 408
Score = 345 (126.5 bits), Expect = 6.3e-75, Sum P(2) = 6.3e-75
Identities = 77/199 (38%), Positives = 118/199 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEV 1669
RQT++F+ATMP VE+LAR L P V +G VG E I Q+V ++ S+ +K L+E
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466
Query: 1670 LNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L + + V++F ++K D + L + LHG K Q R L K G +
Sbjct: 467 LPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHV 526
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG-KEGLAVSFCTKDDSHLF 1787
L+ATDVA RG+DIK + V+NYD+AK ++ + HRIGRTGRAG ++G+A + T+ ++
Sbjct: 527 LIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFA 586
Query: 1788 YDLKQMMISSPVSTCPPEL 1806
+L ++++ + PPEL
Sbjct: 587 GELVNSLVAAGQNV-PPEL 604
Score = 334 (122.6 bits), Expect = 9.1e-74, Sum P(2) = 9.1e-74
Identities = 73/190 (38%), Positives = 113/190 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEV 994
RQT++F+ATMP VE+LAR L P V +G VG E I Q+V ++ S+ +K L+E
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466
Query: 995 LNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L + + V++F ++K D + L + LHG K Q R L K G +
Sbjct: 467 LPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHV 526
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG-KEGLAVSFCTKDDSHLF 1112
L+ATDVA RG+DIK + V+NYD+AK ++ + HRIGRTGRAG ++G+A + T+ ++
Sbjct: 527 LIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFA 586
Query: 1113 YDLKQMMISS 1122
+L ++++
Sbjct: 587 GELVNSLVAA 596
Score = 176 (67.0 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 44/123 (35%), Positives = 65/123 (52%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEV 300
RQT++F+ATMP VE+LAR L P V +G VG E I Q+V ++ S+ +K L+E
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466
Query: 301 LNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L + + V++F ++K D + L + LHG K Q R L K G +
Sbjct: 467 LPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHV 526
Query: 360 LMA 362
L+A
Sbjct: 527 LIA 529
Score = 46 (21.3 bits), Expect = 2.6e-68, Sum P(3) = 2.6e-68
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 195 RQTVMFTATMP 205
RQT++F+ATMP
Sbjct: 407 RQTLLFSATMP 417
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 734 (263.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 168/417 (40%), Positives = 242/417 (58%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
ED I G VP PV + E L E L + I + Y +PTP+QR AIPI L+ RD++
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLG-EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMA 201
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AF P++ I + R + P A+I++PTRELA QI +E KF
Sbjct: 202 CAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS 261
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
G++ V+ GG +Q L G +I++ATPGRL D+LE + + ++ LDEAD
Sbjct: 262 YQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949
RM+DMGFEP ++KI+E M ++ P + RQT++F+AT P +
Sbjct: 322 RMLDMGFEPQIRKIVEQM---DMPP------------------RGVRQTLLFSATFPREI 360
Query: 950 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-------RGVKKP 1002
+RLA +L + +G VG T+ I Q V + + DKR LM++L+ +G +
Sbjct: 361 QRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQAL 420
Query: 1003 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062
++FV K+GAD L L G+ A ++HG + Q++RE+AL + K G ILVATDVA R
Sbjct: 421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR 480
Query: 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
G+DI V+ V+N+D+ I+DY HRIGRTGRAGK GLA +F ++ L L ++M
Sbjct: 481 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELM 537
Score = 734 (263.4 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 168/417 (40%), Positives = 242/417 (58%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
ED I G VP PV + E L E L + I + Y +PTP+QR AIPI L+ RD++
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLG-EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMA 201
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AF P++ I + R + P A+I++PTRELA QI +E KF
Sbjct: 202 CAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS 261
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
G++ V+ GG +Q L G +I++ATPGRL D+LE + + ++ LDEAD
Sbjct: 262 YQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEAD 321
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624
RM+DMGFEP ++KI+E M ++ P + RQT++F+AT P +
Sbjct: 322 RMLDMGFEPQIRKIVEQM---DMPP------------------RGVRQTLLFSATFPREI 360
Query: 1625 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN-------RGVKKP 1677
+RLA +L + +G VG T+ I Q V + + DKR LM++L+ +G +
Sbjct: 361 QRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQAL 420
Query: 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737
++FV K+GAD L L G+ A ++HG + Q++RE+AL + K G ILVATDVA R
Sbjct: 421 TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR 480
Query: 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
G+DI V+ V+N+D+ I+DY HRIGRTGRAGK GLA +F ++ L L ++M
Sbjct: 481 GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELM 537
Score = 369 (135.0 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 74/166 (44%), Positives = 105/166 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + Y +PTP+QR AIPI L+ RD++ A+TGSGKT AF P++ I + R +
Sbjct: 174 IRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGS 233
Query: 62 DQG-PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P A+I++PTRELA QI +E KF G++ V+ GG +Q L G +I++A
Sbjct: 234 RTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVA 293
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
TPGRL D+LE + + ++ LDEADRM+DMGFEP ++KI+E M
Sbjct: 294 TPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQM 339
Score = 202 (76.2 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 47/128 (36%), Positives = 75/128 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT P ++RLA +L + +G VG T+ I Q V + + DKR LM++L
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLL 406
Query: 302 N-------RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 354
+ +G + ++FV K+GAD L L G+ A ++HG + Q++RE+AL + K
Sbjct: 407 HAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466
Query: 355 GSKDILMA 362
G IL+A
Sbjct: 467 GRTPILVA 474
Score = 60 (26.2 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAGK GLA +F ++ L L ++M
Sbjct: 509 TGRAGKSGLATAFFNDGNTSLARPLAELM 537
Score = 48 (22.0 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
VP +RN AS P L +++GY P R A
Sbjct: 31 VPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWA 66
Score = 41 (19.5 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT++F+AT P
Sbjct: 347 RQTLLFSATFP 357
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 450 (163.5 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 89/215 (41%), Positives = 136/215 (63%)
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
T ++ +R +T++G P P+ N+ EA+ P ++E+I++ + EPT IQ Q P+
Sbjct: 57 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 116
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 117 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 172
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
+ ++ +++ + GG + Q L G EI IATPGRLID LE L +CTY
Sbjct: 173 QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 232
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 233 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 262
Score = 450 (163.5 bits), Expect = 9.2e-73, Sum P(2) = 9.2e-73
Identities = 89/215 (41%), Positives = 136/215 (63%)
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
T ++ +R +T++G P P+ N+ EA+ P ++E+I++ + EPT IQ Q P+
Sbjct: 57 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 116
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 117 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 172
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
+ ++ +++ + GG + Q L G EI IATPGRLID LE L +CTY
Sbjct: 173 QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 232
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 233 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 262
Score = 385 (140.6 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 106/316 (33%), Positives = 167/316 (52%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I++ + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 96 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 154
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 155 ---GPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 211
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L +CTY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 212 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 271
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K+ + IL+ + V + D E + +L+ S+K
Sbjct: 272 KEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH---DVEKDDKLIRLMEEIMSEK 328
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T + L R +RR +G G +++ V + K L+
Sbjct: 329 E-NKTIVFVETKRRC-DDLTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 385
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 386 TDVASRGLDVEDVKFV 401
Score = 331 (121.6 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 261 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 320
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 321 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 380
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 381 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 440
Query: 1112 FYDL 1115
DL
Sbjct: 441 VNDL 444
Score = 331 (121.6 bits), Expect = 9.2e-73, Sum P(2) = 9.2e-73
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 261 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 320
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 321 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 380
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 381 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 440
Query: 1787 FYDL 1790
DL
Sbjct: 441 VNDL 444
Score = 171 (65.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 261 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 320
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 321 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 380
Query: 358 DILMA 362
IL+A
Sbjct: 381 PILIA 385
Score = 38 (18.4 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1696 EKLGYNACTLHGGKGQEQ 1713
++ G N +H G Q+Q
Sbjct: 556 QQYGSNIANMHNGMNQQQ 573
Score = 38 (18.4 bits), Expect = 6.3e-42, Sum P(2) = 6.3e-42
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1021 EKLGYNACTLHGGKGQEQ 1038
++ G N +H G Q+Q
Sbjct: 556 QQYGSNIANMHNGMNQQQ 573
Score = 38 (18.4 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 327 EKLGYNACTLHGGKGQEQ 344
++ G N +H G Q+Q
Sbjct: 556 QQYGSNIANMHNGMNQQQ 573
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 450 (163.5 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 89/215 (41%), Positives = 136/215 (63%)
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
T ++ +R +T++G P P+ N+ EA+ P ++E+I++ + EPT IQ Q P+
Sbjct: 65 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 124
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 125 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 180
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
+ ++ +++ + GG + Q L G EI IATPGRLID LE L +CTY
Sbjct: 181 QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 240
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 270
Score = 450 (163.5 bits), Expect = 9.2e-73, Sum P(2) = 9.2e-73
Identities = 89/215 (41%), Positives = 136/215 (63%)
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
T ++ +R +T++G P P+ N+ EA+ P ++E+I++ + EPT IQ Q P+
Sbjct: 65 TAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVA 124
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ++
Sbjct: 125 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQVQ 180
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
+ ++ +++ + GG + Q L G EI IATPGRLID LE L +CTY
Sbjct: 181 QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY 240
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 LVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 270
Score = 385 (140.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 106/316 (33%), Positives = 167/316 (52%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I++ + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 104 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 162
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 163 ---GPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 219
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L +CTY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 220 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 279
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K+ + IL+ + V + D E + +L+ S+K
Sbjct: 280 KEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCH---DVEKDDKLIRLMEEIMSEK 336
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T + L R +RR +G G +++ V + K L+
Sbjct: 337 E-NKTIVFVETKRRC-DDLTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 393
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 394 TDVASRGLDVEDVKFV 409
Score = 331 (121.6 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 328
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 329 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 388
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 389 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 448
Query: 1112 FYDL 1115
DL
Sbjct: 449 VNDL 452
Score = 331 (121.6 bits), Expect = 9.2e-73, Sum P(2) = 9.2e-73
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 328
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 329 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 388
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 389 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 448
Query: 1787 FYDL 1790
DL
Sbjct: 449 VNDL 452
Score = 171 (65.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYI---LSEQDKRKKL 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + + DK +L
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 328
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 329 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 388
Query: 358 DILMA 362
IL+A
Sbjct: 389 PILIA 393
Score = 38 (18.4 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1696 EKLGYNACTLHGGKGQEQ 1713
++ G N +H G Q+Q
Sbjct: 564 QQYGSNIANMHNGMNQQQ 581
Score = 38 (18.4 bits), Expect = 6.3e-42, Sum P(2) = 6.3e-42
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1021 EKLGYNACTLHGGKGQEQ 1038
++ G N +H G Q+Q
Sbjct: 564 QQYGSNIANMHNGMNQQQ 581
Score = 38 (18.4 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 327 EKLGYNACTLHGGKGQEQ 344
++ G N +H G Q+Q
Sbjct: 564 QQYGSNIANMHNGMNQQQ 581
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 732 (262.7 bits), Expect = 9.6e-74, Sum P(2) = 9.6e-74
Identities = 171/418 (40%), Positives = 241/418 (57%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
ED I G VP PV + E L E L + I++ Y +PTP+QR AIPI RD++
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLG-EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMA 188
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEETNKF 828
A+TGSGKT AF P++ I I R +G P A+I++PTRELA QI +E KF
Sbjct: 189 CAQTGSGKTAAFCFPIISGIMKDQHIERPRGV-RGVYPLAVILSPTRELACQIHDEARKF 247
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G++ V+ GG +Q L G +I++ATPGRL D+LE + L ++ LDEA
Sbjct: 248 SYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 948
DRM+DMGFEP ++KI++ M ++ P RQT++F+AT P
Sbjct: 308 DRMLDMGFEPQIRKIVQQM---DMPPPG------------------VRQTMLFSATFPRE 346
Query: 949 VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL-------NRGVKK 1001
++RLA +L + +G VG T+ I Q V + + DKR LM++L N+G +
Sbjct: 347 IQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQA 406
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
++FV KKGAD L L G+ A T+HG + Q++RE+AL S K G ILVATDVA
Sbjct: 407 LTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAA 466
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
RG+DI V+ V+N+D+ I+DY HRIGRTGRAG GLA +F +++ + L ++M
Sbjct: 467 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELM 524
Score = 732 (262.7 bits), Expect = 3.3e-71, P = 3.3e-71
Identities = 171/418 (40%), Positives = 241/418 (57%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
ED I G VP PV + E L E L + I++ Y +PTP+QR AIPI RD++
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLG-EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMA 188
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEETNKF 1503
A+TGSGKT AF P++ I I R +G P A+I++PTRELA QI +E KF
Sbjct: 189 CAQTGSGKTAAFCFPIISGIMKDQHIERPRGV-RGVYPLAVILSPTRELACQIHDEARKF 247
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G++ V+ GG +Q L G +I++ATPGRL D+LE + L ++ LDEA
Sbjct: 248 SYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEA 307
Query: 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 1623
DRM+DMGFEP ++KI++ M ++ P RQT++F+AT P
Sbjct: 308 DRMLDMGFEPQIRKIVQQM---DMPPPG------------------VRQTMLFSATFPRE 346
Query: 1624 VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL-------NRGVKK 1676
++RLA +L + +G VG T+ I Q V + + DKR LM++L N+G +
Sbjct: 347 IQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQA 406
Query: 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736
++FV KKGAD L L G+ A T+HG + Q++RE+AL S K G ILVATDVA
Sbjct: 407 LTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAA 466
Query: 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
RG+DI V+ V+N+D+ I+DY HRIGRTGRAG GLA +F +++ + L ++M
Sbjct: 467 RGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELM 524
Score = 360 (131.8 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 75/167 (44%), Positives = 105/167 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I++ Y +PTP+QR AIPI RD++ A+TGSGKT AF P++ I I R
Sbjct: 161 IQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGV 220
Query: 62 DQG--PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+G P A+I++PTRELA QI +E KF G++ V+ GG +Q L G +I++
Sbjct: 221 -RGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILV 279
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
ATPGRL D+LE + L ++ LDEADRM+DMGFEP ++KI++ M
Sbjct: 280 ATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQM 326
Score = 218 (81.8 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 51/128 (39%), Positives = 75/128 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT P ++RLA +L + +G VG T+ I Q V + + DKR LM++L
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLL 393
Query: 302 -------NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 354
N+G + ++FV KKGAD L L G+ A T+HG + Q++RE+AL S K
Sbjct: 394 HAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKT 453
Query: 355 GSKDILMA 362
G IL+A
Sbjct: 454 GRTPILVA 461
Score = 54 (24.1 bits), Expect = 9.6e-74, Sum P(2) = 9.6e-74
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG GLA +F +++ + L ++M
Sbjct: 496 TGRAGNSGLATAFFNDNNTTMAKPLAELM 524
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT++F+AT P
Sbjct: 334 RQTMLFSATFP 344
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 412 (150.1 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 80/212 (37%), Positives = 136/212 (64%)
Query: 701 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 760
+M+ + + R+ + I + G +P P++N+K+ P +L+ +++ G +PTPIQ Q +P
Sbjct: 119 KMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLP 178
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
+ L RD+IG+A TGSGKTL F+LP+++ I ++ A +GP +I+ P+RELA+Q
Sbjct: 179 VILAGRDMIGIAFTGSGKTLVFVLPMIM-IALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
Query: 821 IEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 874
E +F PL G +R++L +GG+ Q ++ G IV+ATPGRL D+L +
Sbjct: 238 TYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK 297
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
+ L+ C Y+ LDEADR++D+GFE D++++ ++
Sbjct: 298 MSLDACRYLTLDEADRLVDLGFEDDIREVFDH 329
Score = 412 (150.1 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 80/212 (37%), Positives = 136/212 (64%)
Query: 1376 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 1435
+M+ + + R+ + I + G +P P++N+K+ P +L+ +++ G +PTPIQ Q +P
Sbjct: 119 KMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLP 178
Query: 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
+ L RD+IG+A TGSGKTL F+LP+++ I ++ A +GP +I+ P+RELA+Q
Sbjct: 179 VILAGRDMIGIAFTGSGKTLVFVLPMIM-IALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
Query: 1496 IEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 1549
E +F PL G +R++L +GG+ Q ++ G IV+ATPGRL D+L +
Sbjct: 238 TYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKK 297
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
+ L+ C Y+ LDEADR++D+GFE D++++ ++
Sbjct: 298 MSLDACRYLTLDEADRLVDLGFEDDIREVFDH 329
Score = 406 (148.0 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 92/218 (42%), Positives = 127/218 (58%)
Query: 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVY 1655
E+ + ++ K RQT++F+ATMP ++ ARS L +P TV +G G + I+++ Y
Sbjct: 320 EDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEY 379
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ E K L+E L + PV+IF K D + + L G A +HGGK QE RE
Sbjct: 380 VKQEA-KIVYLLECLQK-TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRE 437
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
A++S K G KD+LVATDVA +G+D D+ VINYDM IE+Y HRIGRTGR GK G+A
Sbjct: 438 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 497
Query: 1776 VSFCTKDDSHL-FYDLKQMMISSPVSTCPPEL--LNHP 1810
+F K+ S DLK ++ + PP L LN P
Sbjct: 498 TTFINKNQSETTLLDLKHLLQEAK-QRIPPVLAELNDP 534
Score = 399 (145.5 bits), Expect = 7.0e-73, Sum P(2) = 7.0e-73
Identities = 86/200 (43%), Positives = 120/200 (60%)
Query: 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVY 980
E+ + ++ K RQT++F+ATMP ++ ARS L +P TV +G G + I+++ Y
Sbjct: 320 EDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEY 379
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ E K L+E L + PV+IF K D + + L G A +HGGK QE RE
Sbjct: 380 VKQEA-KIVYLLECLQK-TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRE 437
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
A++S K G KD+LVATDVA +G+D D+ VINYDM IE+Y HRIGRTGR GK G+A
Sbjct: 438 YAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIA 497
Query: 1101 VSFCTKDDSHL-FYDLKQMM 1119
+F K+ S DLK ++
Sbjct: 498 TTFINKNQSETTLLDLKHLL 517
Score = 342 (125.4 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 72/169 (42%), Positives = 111/169 (65%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
EK G +PTPIQ Q +P+ L RD+IG+A TGSGKTL F+LP+++ I ++ A
Sbjct: 163 EK-GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM-IALQEEMMMPIAAG 220
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCE 116
+GP +I+ P+RELA+Q E +F PL G +R++L +GG+ Q ++ G
Sbjct: 221 EGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280
Query: 117 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
IV+ATPGRL D+L + + L+ C Y+ LDEADR++D+GFE D++++ ++
Sbjct: 281 IVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDH 329
Score = 218 (81.8 bits), Expect = 8.4e-48, Sum P(3) = 8.4e-48
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 228 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVY 286
E+ + ++ K RQT++F+ATMP ++ ARS L +P TV +G G + I+++ Y
Sbjct: 320 EDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEY 379
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
+ E K L+E L + PV+IF K D + + L G A +HGGK QE RE
Sbjct: 380 VKQEA-KIVYLLECLQK-TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRE 437
Query: 347 LALNSLKGGSKDILMA 362
A++S K G KD+L+A
Sbjct: 438 YAISSFKAGKKDVLVA 453
Score = 70 (29.7 bits), Expect = 8.4e-48, Sum P(3) = 8.4e-48
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHL-FYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMA 1181
TGR GK G+A +F K+ S DLK ++ + PP L D + T+ A
Sbjct: 488 TGRCGKTGIATTFINKNQSETTLLDLKHLLQEAK-QRIPPVLAELNDPMEEAETIANA 544
Score = 56 (24.8 bits), Expect = 6.0e-31, Sum P(3) = 6.0e-31
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDT 222
E+ + ++ K RQT++F+ATMP KI + +KP T
Sbjct: 320 EDDIREVFDHFKSQRQTLLFSATMP-TKIQIFARSALVKPVT 360
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 450 (163.5 bits), Expect = 1.7e-73, Sum P(2) = 1.7e-73
Identities = 89/195 (45%), Positives = 130/195 (66%)
Query: 714 YSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773
+ IT+ GG+VP P+ +++ P E+L + G++ PTPIQ Q+ PI +Q RDI+ +A+
Sbjct: 144 HEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Query: 774 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 833
TGSGKTL +L+P + +Q + +RM GP ++++PTRELA QI+EE KFG
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-----GPTILVLSPTRELATQIQEEAVKFGRSSR 258
Query: 834 IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893
I + GG + Q L G +IV+ATPGRL D+LE R + L Q +Y+VLDEADRM+D
Sbjct: 259 ISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 894 MGFEPDVQKILEYMP 908
MGFEP ++KI++ +P
Sbjct: 319 MGFEPQIRKIVKEIP 333
Score = 450 (163.5 bits), Expect = 1.7e-73, Sum P(2) = 1.7e-73
Identities = 89/195 (45%), Positives = 130/195 (66%)
Query: 1389 YSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448
+ IT+ GG+VP P+ +++ P E+L + G++ PTPIQ Q+ PI +Q RDI+ +A+
Sbjct: 144 HEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Query: 1449 TGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 1508
TGSGKTL +L+P + +Q + +RM GP ++++PTRELA QI+EE KFG
Sbjct: 204 TGSGKTLGYLIPGFLHLQRIRNDSRM-----GPTILVLSPTRELATQIQEEAVKFGRSSR 258
Query: 1509 IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568
I + GG + Q L G +IV+ATPGRL D+LE R + L Q +Y+VLDEADRM+D
Sbjct: 259 ISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLD 318
Query: 1569 MGFEPDVQKILEYMP 1583
MGFEP ++KI++ +P
Sbjct: 319 MGFEPQIRKIVKEIP 333
Score = 391 (142.7 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 79/162 (48%), Positives = 111/162 (68%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G++ PTPIQ Q+ PI +Q RDI+ +A+TGSGKTL +L+P + +Q + +RM GP
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-----GP 231
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
++++PTRELA QI+EE KFG I + GG + Q L G +IV+ATPGRL
Sbjct: 232 TILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRL 291
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
D+LE R + L Q +Y+VLDEADRM+DMGFEP ++KI++ +P
Sbjct: 292 NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIP 333
Score = 356 (130.4 bits), Expect = 1.7e-73, Sum P(2) = 1.7e-73
Identities = 77/199 (38%), Positives = 118/199 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 1668
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +++ +K+++L +
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 1669 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
+L ++ VIIF + K+ D L + L + + A +HG K Q +R+ LN + G
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
+LVATDVA RG+D+KD+ V+NYD +EDY HRIGRTGRAG G A +F DS
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHA 514
Query: 1788 YDLKQMMISSPVSTCPPEL 1806
DL +++ + PP++
Sbjct: 515 SDLIKILEGAN-QRVPPQI 532
Score = 353 (129.3 bits), Expect = 3.5e-73, Sum P(2) = 3.5e-73
Identities = 75/187 (40%), Positives = 113/187 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 993
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +++ +K+++L +
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 994 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
+L ++ VIIF + K+ D L + L + + A +HG K Q +R+ LN + G
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
+LVATDVA RG+D+KD+ V+NYD +EDY HRIGRTGRAG G A +F DS
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHA 514
Query: 1113 YDLKQMM 1119
DL +++
Sbjct: 515 SDLIKIL 521
Score = 177 (67.4 bits), Expect = 5.4e-47, Sum P(3) = 5.4e-47
Identities = 41/124 (33%), Positives = 71/124 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 299
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +++ +K+++L +
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 300 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
+L ++ VIIF + K+ D L + L + + A +HG K Q +R+ LN + G
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 359 ILMA 362
+L+A
Sbjct: 455 VLVA 458
Score = 52 (23.4 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 39/147 (26%), Positives = 68/147 (46%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA 254
RQT+M+TAT P + + + P + + ++L+AN K Q + A M
Sbjct: 336 RQTLMYTATWPKG-VRKIAADLLVNPAQVNIGNVDELVAN----KSITQHIEVVAPMEKQ 390
Query: 255 --VERLARSYLRRPATVYIGSVGKPTERI-EQIVYILSEQ--------DKRKKLME-VLN 302
+E++ RS + P + I + T+R+ +Q+ L+ Q DK + + VLN
Sbjct: 391 RRLEQILRS--QEPGSKVI--IFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLN 446
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLE 327
R + PV++ DV A+GL+
Sbjct: 447 QFRSGRTPVLV------ATDVAARGLD 467
Score = 49 (22.3 bits), Expect = 5.4e-47, Sum P(3) = 5.4e-47
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG G A +F DS DL +++ + PP++
Sbjct: 493 TGRAGATGQAFTFFGDQDSKHASDLIKILEGAN-QRVPPQI 532
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 703 (252.5 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 177/459 (38%), Positives = 266/459 (57%)
Query: 692 RHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASL-PTEILE-IIEKIGYA 749
+HWTEKSL EM ERDWRI +EDY+I KGG V +P+RNW+E ++ P ++L II+++ +
Sbjct: 136 KHWTEKSLHEMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFP 195
Query: 750 EPTPIQRQAIP--IGL-QNRDIIGVAETGSGKTLAFLLPLLVWI-QSLPKIARMEDADQG 805
PTPIQR IP + Q RD +GVA TGSGKTLAF++P+L+ + +S P+ ++ D G
Sbjct: 196 SPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIID-G 254
Query: 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 865
P A+I+APTREL QQI++ET K V + +E + C+++ G
Sbjct: 255 PKALILAPTRELVQQIQKETQK------------VTKIWSKESNY----DCKVISIVGGH 298
Query: 866 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD--VQKILEYMPVTNLKPDTE-DAEDE 922
++ E + + C +V R+ID E V K +E + + + ED+
Sbjct: 299 SLE--EISFSLSEGCDILVATPG-RLID-SLENHLLVMKQVETLVLDEADKMIDLGFEDQ 354
Query: 923 -NKLLA--NYNSKKKY-RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
+L + N+ RQT+MFTATM P +E++A Y+++P IG I+Q+
Sbjct: 355 VTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQV 414
Query: 979 V-YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQ 1036
V Y +++DK KKL ++ + P+IIF+N K+ AD LA+ +K LHG K Q
Sbjct: 415 VEYADNDEDKFKKLKPIVAK-YDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQ 473
Query: 1037 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
EQRE +L + I++AT+VA RG+DI +VS+V+N+ ++K ++DY HRIGRTGRA
Sbjct: 474 EQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAAN 533
Query: 1097 EGLAVSFCTK-DDSHLFYDL-KQMMISSPVTGRAGKEGL 1133
EG AVSF + +D L +L K + P+ E +
Sbjct: 534 EGTAVSFVSAAEDESLIRELYKYVRKHDPLNSNIFSEAV 572
Score = 703 (252.5 bits), Expect = 4.0e-71, Sum P(3) = 4.0e-71
Identities = 176/452 (38%), Positives = 266/452 (58%)
Query: 1367 RHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASL-PTEILE-IIEKIGYA 1424
+HWTEKSL EM ERDWRI +EDY+I KGG V +P+RNW+E ++ P ++L II+++ +
Sbjct: 136 KHWTEKSLHEMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFP 195
Query: 1425 EPTPIQRQAIP--IGL-QNRDIIGVAETGSGKTLAFLLPLLVWI-QSLPKIARMEDADQG 1480
PTPIQR IP + Q RD +GVA TGSGKTLAF++P+L+ + +S P+ ++ D G
Sbjct: 196 SPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIID-G 254
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540
P A+I+APTREL QQI++ET K V + +E + C+++ G
Sbjct: 255 PKALILAPTRELVQQIQKETQK------------VTKIWSKESNY----DCKVISIVGGH 298
Query: 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD--VQKILEYMPVTNLKPDTE-DAEDE 1597
++ E + + C +V R+ID E V K +E + + + ED+
Sbjct: 299 SLE--EISFSLSEGCDILVATPG-RLID-SLENHLLVMKQVETLVLDEADKMIDLGFEDQ 354
Query: 1598 -NKLLA--NYNSKKKY-RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653
+L + N+ RQT+MFTATM P +E++A Y+++P IG I+Q+
Sbjct: 355 VTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQV 414
Query: 1654 V-YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQ 1711
V Y +++DK KKL ++ + P+IIF+N K+ AD LA+ +K LHG K Q
Sbjct: 415 VEYADNDEDKFKKLKPIVAK-YDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQ 473
Query: 1712 EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771
EQRE +L + I++AT+VA RG+DI +VS+V+N+ ++K ++DY HRIGRTGRA
Sbjct: 474 EQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAAN 533
Query: 1772 EGLAVSFCTK-DDSHLFYDL-KQMMISSPVST 1801
EG AVSF + +D L +L K + P+++
Sbjct: 534 EGTAVSFVSAAEDESLIRELYKYVRKHDPLNS 565
Score = 378 (138.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 86/173 (49%), Positives = 116/173 (67%)
Query: 1 IIEKIGYAEPTPIQRQAIP--IGL-QNRDIIGVAETGSGKTLAFLLPLLVWI-QSLPKIA 56
II+++ + PTPIQR IP + Q RD +GVA TGSGKTLAF++P+L+ + +S P+
Sbjct: 188 IIQELRFPSPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPP 247
Query: 57 RMEDADQGPYAIIMAPTRELAQQIEEETNKFG------TPLGIRTVLVVGGLSREEQGFR 110
++ D GP A+I+APTREL QQI++ET K + + + +VGG S EE F
Sbjct: 248 SLKIID-GPKALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFS 306
Query: 111 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
L GC+I++ATPGRLID LEN LV+ Q +VLDEAD+MID+GFE V IL
Sbjct: 307 LSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNIL 359
Score = 208 (78.3 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 48/123 (39%), Positives = 72/123 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV-YILSEQDKRKKLMEV 300
RQT+MFTATM P +E++A Y+++P IG I+Q+V Y +++DK KKL +
Sbjct: 372 RQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPI 431
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ + P+IIF+N K+ AD LA+ +K LHG K QEQRE +L + I
Sbjct: 432 VAK-YDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQI 490
Query: 360 LMA 362
++A
Sbjct: 491 MIA 493
Score = 54 (24.1 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1125 TGRAGKEGLAVSFCTK-DDSHLFYDL-KQMMISSPVST 1160
TGRA EG AVSF + +D L +L K + P+++
Sbjct: 528 TGRAANEGTAVSFVSAAEDESLIRELYKYVRKHDPLNS 565
Score = 46 (21.3 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 611 FDWDASEDTSVDYNSIYKER 630
F W+ SEDT Y+ I R
Sbjct: 95 FSWNESEDTLSGYDPIVSTR 114
Score = 46 (21.3 bits), Expect = 4.0e-71, Sum P(3) = 4.0e-71
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1286 FDWDASEDTSVDYNSIYKER 1305
F W+ SEDT Y+ I R
Sbjct: 95 FSWNESEDTLSGYDPIVSTR 114
Score = 41 (19.5 bits), Expect = 3.4e-32, Sum P(3) = 3.4e-32
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 151 IDMGFEPDVQKILEY 165
++ G EP +Q+++EY
Sbjct: 403 VETGSEPLIQQVVEY 417
Score = 37 (18.1 bits), Expect = 5.8e-72, Sum P(3) = 5.8e-72
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 642 AGIDIK-AQKRDQSKFYGEMLEKRR 665
A ++IK RD S F+ E +K+R
Sbjct: 60 AKVEIKKVNSRDDS-FFNETNDKKR 83
Score = 37 (18.1 bits), Expect = 7.8e-69, Sum P(2) = 7.8e-69
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1317 AGIDIK-AQKRDQSKFYGEMLEKRR 1340
A ++IK RD S F+ E +K+R
Sbjct: 60 AKVEIKKVNSRDDS-FFNETNDKKR 83
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 453 (164.5 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+R IT+KG P P+ + EA+ P ++++I K + +PTPIQ Q P+ L +D++
Sbjct: 78 YRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMV 137
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTL++LLP +V I P + E D GP +++APTRELAQQ+++ ++G
Sbjct: 138 GIAQTGSGKTLSYLLPAIVHINHQPFL---EHGD-GPICLVLAPTRELAQQVQQVAAEYG 193
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
I++ + GG + Q L G EI IATPGRLID LE L +CTY+VLDEAD
Sbjct: 194 KASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEAD 253
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 254 RMLDMGFEPQIRKIVD-----QIRPDRQ 276
Score = 453 (164.5 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+R IT+KG P P+ + EA+ P ++++I K + +PTPIQ Q P+ L +D++
Sbjct: 78 YRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMV 137
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTL++LLP +V I P + E D GP +++APTRELAQQ+++ ++G
Sbjct: 138 GIAQTGSGKTLSYLLPAIVHINHQPFL---EHGD-GPICLVLAPTRELAQQVQQVAAEYG 193
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
I++ + GG + Q L G EI IATPGRLID LE L +CTY+VLDEAD
Sbjct: 194 KASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEAD 253
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 254 RMLDMGFEPQIRKIVD-----QIRPDRQ 276
Score = 405 (147.6 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 113/317 (35%), Positives = 172/317 (54%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I K + +PTPIQ Q P+ L +D++G+A+TGSGKTL++LLP +V I P + E
Sbjct: 110 VITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFL---EH 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
D GP +++APTRELAQQ+++ ++G I++ + GG + Q L G EI IA
Sbjct: 167 GD-GPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIA 225
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L +CTY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 226 TPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 285
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPA-KILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
E + LA + K+Y Q + + IL+ + V N D E + +LL S+
Sbjct: 286 KEVRQLAE-DFLKEYIQINVGALQLSANHNILQIVDVCN---DGEKEDKLIRLLEEIMSE 341
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K+ +T++F T + L R +RR +G G ++ V + K L+
Sbjct: 342 KE-NKTIIFVETKRRC-DDLTRR-MRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILI 398
Query: 299 --EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 399 ATDVASRGLDVEDVKFV 415
Score = 329 (120.9 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +L+ + +G++ I QIV + ++ +K KL+ +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRL 334
Query: 995 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
L + + IIFV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKA 394
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VIN+D + EDY HRIGRT R+ K G A +F T ++
Sbjct: 395 PILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454
Query: 1112 FYDLKQMM 1119
+DL ++
Sbjct: 455 AHDLVSVL 462
Score = 329 (120.9 bits), Expect = 2.8e-72, Sum P(2) = 2.8e-72
Identities = 71/188 (37%), Positives = 111/188 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +L+ + +G++ I QIV + ++ +K KL+ +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRL 334
Query: 1670 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
L + + IIFV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKA 394
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VIN+D + EDY HRIGRT R+ K G A +F T ++
Sbjct: 395 PILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454
Query: 1787 FYDLKQMM 1794
+DL ++
Sbjct: 455 AHDLVSVL 462
Score = 171 (65.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 41/125 (32%), Positives = 69/125 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +L+ + +G++ I QIV + ++ +K KL+ +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRL 334
Query: 301 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L + + IIFV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKA 394
Query: 358 DILMA 362
IL+A
Sbjct: 395 PILIA 399
Score = 39 (18.8 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
T R+ K G A +F T ++ +DL ++
Sbjct: 434 TARSQKTGTAYTFFTPNNMKQAHDLVSVL 462
Score = 39 (18.8 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTVMFT-ATMPPAVERLAR 954
L P E A+ ++ A Y + + T ++ A P + L R
Sbjct: 175 LAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLER 218
Score = 39 (18.8 bits), Expect = 8.6e-25, Sum P(2) = 8.6e-25
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 1587 LKPDTEDAEDENKLLANYNSKKKYRQTVMFT-ATMPPAVERLAR 1629
L P E A+ ++ A Y + + T ++ A P + L R
Sbjct: 175 LAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLER 218
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 701 (251.8 bits), Expect = 5.4e-72, Sum P(2) = 5.4e-72
Identities = 160/391 (40%), Positives = 235/391 (60%)
Query: 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI 796
+L I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 797 ARMEDADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
E ++ P +I+APTRELA QI + KF GI+ V++ GG + +
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-E 905
Q L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 906 Y-MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y MP + T + + E K N K RQT+MF+AT ++ LA+ YL + +
Sbjct: 553 YDMPGNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLL 609
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
+G VG E I+Q + + E++K L+ +L I+FV K+ AD++ + L
Sbjct: 610 VGKVGSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQK 669
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
NA +HG K Q++RE AL K G K+ILVATDVA RG+DI ++ VIN+D+ +I+DY
Sbjct: 670 LNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDY 729
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
HRIGRTGRAG G+A SF +D+ ++F DL
Sbjct: 730 IHRIGRTGRAGNIGIATSFVNEDNKNIFKDL 760
Score = 701 (251.8 bits), Expect = 6.8e-68, P = 6.8e-68
Identities = 160/391 (40%), Positives = 235/391 (60%)
Query: 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI 1471
+L I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 1472 ARMEDADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
E ++ P +I+APTRELA QI + KF GI+ V++ GG + +
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-E 1580
Q L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 1581 Y-MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y MP + T + + E K N K RQT+MF+AT ++ LA+ YL + +
Sbjct: 553 YDMPGNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLL 609
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1699
+G VG E I+Q + + E++K L+ +L I+FV K+ AD++ + L
Sbjct: 610 VGKVGSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQK 669
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
NA +HG K Q++RE AL K G K+ILVATDVA RG+DI ++ VIN+D+ +I+DY
Sbjct: 670 LNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDY 729
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
HRIGRTGRAG G+A SF +D+ ++F DL
Sbjct: 730 IHRIGRTGRAGNIGIATSFVNEDNKNIFKDL 760
Score = 358 (131.1 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 118/360 (32%), Positives = 183/360 (50%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKIARME 59
I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK E
Sbjct: 377 IKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYE 436
Query: 60 DADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 109
++ P +I+APTRELA QI + KF GI+ V++ GG + + Q
Sbjct: 437 QNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLS 496
Query: 110 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EY-MP 167
L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +Y MP
Sbjct: 497 NLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMP 556
Query: 168 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM-PPAKIL--EYM----------- 213
+ T + + E K N K RQT+MF+AT ++L EY+
Sbjct: 557 GNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKV 613
Query: 214 PVTN--LKPDTEDAEDENKL--LANYNSKKKYRQTVMFTATMPPA--VERLARSYLRRPA 267
TN +K + E+ENK L N ++ T++F T A +ER +
Sbjct: 614 GSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAV 673
Query: 268 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
++ G QD+R++ +++ RG+K ++ DV A+GL+
Sbjct: 674 CIH-GD---------------KSQDERERALKLFKRGIKNILV-------ATDVAARGLD 710
Score = 203 (76.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 49/143 (34%), Positives = 77/143 (53%)
Query: 221 DTEDAEDENKL-LANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 279
D + ENK+ Y + RQT+MF+AT ++ LA+ YL + + +G VG E
Sbjct: 559 DNDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNE 618
Query: 280 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
I+Q + + E++K L+ +L I+FV K+ AD++ + L NA +HG
Sbjct: 619 YIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGD 678
Query: 340 KGQEQRELALNSLKGGSKDILMA 362
K Q++RE AL K G K+IL+A
Sbjct: 679 KSQDERERALKLFKRGIKNILVA 701
Score = 69 (29.3 bits), Expect = 5.4e-72, Sum P(2) = 5.4e-72
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG G+A SF +D+ ++F DL
Sbjct: 736 TGRAGNIGIATSFVNEDNKNIFKDL 760
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 701 (251.8 bits), Expect = 5.4e-72, Sum P(2) = 5.4e-72
Identities = 160/391 (40%), Positives = 235/391 (60%)
Query: 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI 796
+L I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 797 ARMEDADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
E ++ P +I+APTRELA QI + KF GI+ V++ GG + +
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-E 905
Q L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 906 Y-MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
Y MP + T + + E K N K RQT+MF+AT ++ LA+ YL + +
Sbjct: 553 YDMPGNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLL 609
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
+G VG E I+Q + + E++K L+ +L I+FV K+ AD++ + L
Sbjct: 610 VGKVGSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQK 669
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
NA +HG K Q++RE AL K G K+ILVATDVA RG+DI ++ VIN+D+ +I+DY
Sbjct: 670 LNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDY 729
Query: 1085 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
HRIGRTGRAG G+A SF +D+ ++F DL
Sbjct: 730 IHRIGRTGRAGNIGIATSFVNEDNKNIFKDL 760
Score = 701 (251.8 bits), Expect = 6.8e-68, P = 6.8e-68
Identities = 160/391 (40%), Positives = 235/391 (60%)
Query: 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI 1471
+L I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK
Sbjct: 373 LLSNIKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKH 432
Query: 1472 ARMEDADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
E ++ P +I+APTRELA QI + KF GI+ V++ GG + +
Sbjct: 433 TYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIK 492
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-E 1580
Q L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVND 552
Query: 1581 Y-MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
Y MP + T + + E K N K RQT+MF+AT ++ LA+ YL + +
Sbjct: 553 YDMPGNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLL 609
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1699
+G VG E I+Q + + E++K L+ +L I+FV K+ AD++ + L
Sbjct: 610 VGKVGSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQK 669
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
NA +HG K Q++RE AL K G K+ILVATDVA RG+DI ++ VIN+D+ +I+DY
Sbjct: 670 LNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDY 729
Query: 1760 THRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
HRIGRTGRAG G+A SF +D+ ++F DL
Sbjct: 730 IHRIGRTGRAGNIGIATSFVNEDNKNIFKDL 760
Score = 358 (131.1 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 118/360 (32%), Positives = 183/360 (50%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKIARME 59
I+K+ Y + TPIQ+ ++ I + D+IGVA+TGSGKT +LLP++ + I PK E
Sbjct: 377 IKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYE 436
Query: 60 DADQG----------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 109
++ P +I+APTRELA QI + KF GI+ V++ GG + + Q
Sbjct: 437 QNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLS 496
Query: 110 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EY-MP 167
L G +I++ATPGRL D+LE + L T++VLDEADRM+DMGF P ++ I+ +Y MP
Sbjct: 497 NLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMP 556
Query: 168 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM-PPAKIL--EYM----------- 213
+ T + + E K N K RQT+MF+AT ++L EY+
Sbjct: 557 GNDNDVHTSENKVEYKKYCNDIIK---RQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKV 613
Query: 214 PVTN--LKPDTEDAEDENKL--LANYNSKKKYRQTVMFTATMPPA--VERLARSYLRRPA 267
TN +K + E+ENK L N ++ T++F T A +ER +
Sbjct: 614 GSTNEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAV 673
Query: 268 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
++ G QD+R++ +++ RG+K ++ DV A+GL+
Sbjct: 674 CIH-GD---------------KSQDERERALKLFKRGIKNILV-------ATDVAARGLD 710
Score = 203 (76.5 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 49/143 (34%), Positives = 77/143 (53%)
Query: 221 DTEDAEDENKL-LANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 279
D + ENK+ Y + RQT+MF+AT ++ LA+ YL + + +G VG E
Sbjct: 559 DNDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNE 618
Query: 280 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
I+Q + + E++K L+ +L I+FV K+ AD++ + L NA +HG
Sbjct: 619 YIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGD 678
Query: 340 KGQEQRELALNSLKGGSKDILMA 362
K Q++RE AL K G K+IL+A
Sbjct: 679 KSQDERERALKLFKRGIKNILVA 701
Score = 69 (29.3 bits), Expect = 5.4e-72, Sum P(2) = 5.4e-72
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG G+A SF +D+ ++F DL
Sbjct: 736 TGRAGNIGIATSFVNEDNKNIFKDL 760
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 396 (144.5 bits), Expect = 7.8e-72, Sum P(2) = 7.8e-72
Identities = 77/212 (36%), Positives = 133/212 (62%)
Query: 701 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 760
+M+ + + R+ + IT+ G +P P++N+ + P+ +L +++ G PTPIQ Q +P
Sbjct: 70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLP 129
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
+ L RD+IG+A TGSGKTL F+LP+++ + +I A +GP A+++ P+RELA+Q
Sbjct: 130 VVLSGRDMIGIAFTGSGKTLVFVLPMII-LALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
Query: 821 IEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 874
+ +F L G +R++L +GG+ Q ++ G IV+ATPGRL D+L +
Sbjct: 189 TYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK 248
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
+ L+ C + LDEADR++D+GFE D++ + ++
Sbjct: 249 MSLDACRLLTLDEADRLVDLGFEDDIRHVFDH 280
Score = 396 (144.5 bits), Expect = 7.8e-72, Sum P(2) = 7.8e-72
Identities = 77/212 (36%), Positives = 133/212 (62%)
Query: 1376 EMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 1435
+M+ + + R+ + IT+ G +P P++N+ + P+ +L +++ G PTPIQ Q +P
Sbjct: 70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLP 129
Query: 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
+ L RD+IG+A TGSGKTL F+LP+++ + +I A +GP A+++ P+RELA+Q
Sbjct: 130 VVLSGRDMIGIAFTGSGKTLVFVLPMII-LALQEEIMMPIAAGEGPIALVICPSRELAKQ 188
Query: 1496 IEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 1549
+ +F L G +R++L +GG+ Q ++ G IV+ATPGRL D+L +
Sbjct: 189 TYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK 248
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
+ L+ C + LDEADR++D+GFE D++ + ++
Sbjct: 249 MSLDACRLLTLDEADRLVDLGFEDDIRHVFDH 280
Score = 390 (142.3 bits), Expect = 7.8e-72, Sum P(2) = 7.8e-72
Identities = 88/207 (42%), Positives = 121/207 (58%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A S L +P TV +G G + I+++ Y+ E K L
Sbjct: 282 KSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYL 340
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF K D + + L G A +HGGK QE R+ A++ K G K
Sbjct: 341 LECLQK-TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKK 399
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
D+LVATDVA +G+D D+ VINYDM IE+Y HRIGRTGR GK G+A +F K+ S +
Sbjct: 400 DVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEI 459
Query: 1787 -FYDLKQMMISSPVSTCPPEL--LNHP 1810
DLK ++ + PP L LN P
Sbjct: 460 TLLDLKHLLQEAK-QRIPPVLAELNGP 485
Score = 384 (140.2 bits), Expect = 3.4e-71, Sum P(2) = 3.4e-71
Identities = 82/189 (43%), Positives = 114/189 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A S L +P TV +G G + I+++ Y+ E K L
Sbjct: 282 KSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYL 340
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF K D + + L G A +HGGK QE R+ A++ K G K
Sbjct: 341 LECLQK-TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKK 399
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
D+LVATDVA +G+D D+ VINYDM IE+Y HRIGRTGR GK G+A +F K+ S +
Sbjct: 400 DVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEI 459
Query: 1112 -FYDLKQMM 1119
DLK ++
Sbjct: 460 TLLDLKHLL 468
Score = 326 (119.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 67/166 (40%), Positives = 106/166 (63%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G PTPIQ Q +P+ L RD+IG+A TGSGKTL F+LP+++ + +I A +GP
Sbjct: 116 GIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII-LALQEEIMMPIAAGEGP 174
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPL---G---IRTVLVVGGLSREEQGFRLRLGCEIVI 119
A+++ P+RELA+Q + +F L G +R++L +GG+ Q ++ G IV+
Sbjct: 175 IALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVV 234
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
ATPGRL D+L + + L+ C + LDEADR++D+GFE D++ + ++
Sbjct: 235 ATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDH 280
Score = 201 (75.8 bits), Expect = 9.6e-45, Sum P(3) = 9.6e-45
Identities = 47/125 (37%), Positives = 70/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A S L +P TV +G G + I+++ Y+ E K L
Sbjct: 282 KSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA-KIVYL 340
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF K D + + L G A +HGGK QE R+ A++ K G K
Sbjct: 341 LECLQK-TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKK 399
Query: 358 DILMA 362
D+L+A
Sbjct: 400 DVLVA 404
Score = 71 (30.1 bits), Expect = 9.6e-45, Sum P(3) = 9.6e-45
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHL-FYDLKQMMISSPVSTCPPEL--LNHP 1169
TGR GK G+A +F K+ S + DLK ++ + PP L LN P
Sbjct: 439 TGRCGKTGIATTFINKNQSEITLLDLKHLLQEAK-QRIPPVLAELNGP 485
Score = 60 (26.2 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDT 222
K RQT++F+ATMP AKI + +KP T
Sbjct: 282 KSQRQTLLFSATMP-AKIQIFATSALVKPVT 311
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 418 (152.2 bits), Expect = 8.7e-72, Sum P(2) = 8.7e-72
Identities = 93/222 (41%), Positives = 134/222 (60%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE LP IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHP 204
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 418 (152.2 bits), Expect = 8.7e-72, Sum P(2) = 8.7e-72
Identities = 93/222 (41%), Positives = 134/222 (60%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE LP IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHP 204
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 387 (141.3 bits), Expect = 8.7e-72, Sum P(2) = 8.7e-72
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 544 VLMDLKALLLEAKQKV-PPVL 563
Score = 383 (139.9 bits), Expect = 2.3e-71, Sum P(2) = 2.3e-71
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 544 VLMDLKALLLEA 555
Score = 344 (126.2 bits), Expect = 1.8e-63, Sum P(2) = 1.8e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 256 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 313
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 314 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 210 (79.0 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 358 DILMA 362
D+L+A
Sbjct: 484 DVLVA 488
Score = 64 (27.6 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 523 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 563
Score = 60 (26.2 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 366 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 421
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 482 -KKDVLV------ATDVASKGLD 497
Score = 42 (19.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 443
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 444 DVDAIHE 450
Score = 41 (19.5 bits), Expect = 7.5e-38, Sum P(3) = 7.5e-38
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 433
Score = 37 (18.1 bits), Expect = 5.6e-35, Sum P(2) = 5.6e-35
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 393 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 416 (151.5 bits), Expect = 1.5e-71, Sum P(2) = 1.5e-71
Identities = 93/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE LP IL ++K G P
Sbjct: 145 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHP 203
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 204 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 262
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL + L +GG+S +EQ +R G I++ATPG
Sbjct: 263 CPSRELARQTHGILEYYCRLLQEDSSPL-LHCALCIGGVSLKEQMETMRHGVHIMVATPG 321
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 322 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 363
Score = 416 (151.5 bits), Expect = 1.5e-71, Sum P(2) = 1.5e-71
Identities = 93/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE LP IL ++K G P
Sbjct: 145 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHP 203
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 204 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 262
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL + L +GG+S +EQ +R G I++ATPG
Sbjct: 263 CPSRELARQTHGILEYYCRLLQEDSSPL-LHCALCIGGVSLKEQMETMRHGVHIMVATPG 321
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 322 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 363
Score = 387 (141.3 bits), Expect = 1.5e-71, Sum P(2) = 1.5e-71
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 365 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 423
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 424 LECLQK-TPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 482
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 483 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 542
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 543 VLMDLKALLLEAKQKV-PPVL 562
Score = 383 (139.9 bits), Expect = 4.0e-71, Sum P(2) = 4.0e-71
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 365 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 423
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 424 LECLQK-TPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 482
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 483 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 542
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 543 VLMDLKALLLEA 554
Score = 342 (125.4 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 75/171 (43%), Positives = 106/171 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 195 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 254
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL + L +GG+S +EQ +R G
Sbjct: 255 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LHCALCIGGVSLKEQMETMRHG 312
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
I++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 313 VHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 363
Score = 210 (79.0 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 365 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 423
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 424 LECLQK-TPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 482
Query: 358 DILMA 362
D+L+A
Sbjct: 483 DVLVA 487
Score = 64 (27.6 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 522 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 562
Score = 62 (26.9 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 36/143 (25%), Positives = 64/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 365 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 420
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + ++ A V + +E + ++ +Q++R K +E G
Sbjct: 421 VYLLECLQKTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 480
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 481 -KKDVLV------ATDVASKGLD 496
Score = 41 (19.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 383 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 432
Score = 37 (18.1 bits), Expect = 9.9e-35, Sum P(2) = 9.9e-35
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 392 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 435
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 415 (151.1 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 88/189 (46%), Positives = 126/189 (66%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+T++G VP PV + EA LP +I E++ + +PT IQ + PI + RDII +A+TG
Sbjct: 118 VTLEGRGVPRPVFEFNEAPLPGQIHELLYG-KFQKPTVIQSISWPIAMSGRDIISIAKTG 176
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKTLAF+LP LV I K A + + GP +++ PTRELAQQ++E + F LG++
Sbjct: 177 SGKTLAFMLPALVHIT---KQAHRQRGE-GPAVLVLLPTRELAQQVQEVSIDFCHSLGLK 232
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
+ GG S+ Q L G +IV+ATPGRL+D L+N + +C+Y+VLDEADRM+DMG
Sbjct: 233 MTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMG 292
Query: 896 FEPDVQKIL 904
FEP ++KI+
Sbjct: 293 FEPQIKKII 301
Score = 415 (151.1 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 88/189 (46%), Positives = 126/189 (66%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+T++G VP PV + EA LP +I E++ + +PT IQ + PI + RDII +A+TG
Sbjct: 118 VTLEGRGVPRPVFEFNEAPLPGQIHELLYG-KFQKPTVIQSISWPIAMSGRDIISIAKTG 176
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKTLAF+LP LV I K A + + GP +++ PTRELAQQ++E + F LG++
Sbjct: 177 SGKTLAFMLPALVHIT---KQAHRQRGE-GPAVLVLLPTRELAQQVQEVSIDFCHSLGLK 232
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
+ GG S+ Q L G +IV+ATPGRL+D L+N + +C+Y+VLDEADRM+DMG
Sbjct: 233 MTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMG 292
Query: 1571 FEPDVQKIL 1579
FEP ++KI+
Sbjct: 293 FEPQIKKII 301
Score = 372 (136.0 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 97/262 (37%), Positives = 149/262 (56%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ +PT IQ + PI + RDII +A+TGSGKTLAF+LP LV I K A + + GP
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHIT---KQAHRQRGE-GPA 204
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++ PTRELAQQ++E + F LG++ + GG S+ Q L G +IV+ATPGRL+
Sbjct: 205 VLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLL 264
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMPVTNLKPDTEDAEDENKLL 185
D L+N + +C+Y+VLDEADRM+DMGFEP ++KI+ + P + E + L
Sbjct: 265 DFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRAL 324
Query: 186 ANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKL--LANYNSKKKYRQ 243
A+ +++ F + ++ +T + E+ + KL L N+ +K +
Sbjct: 325 AS-----DFQKDAAFL-NVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECK 378
Query: 244 TVMFTATMPPAVERLARSYLRR 265
T++F T A E L R+ +RR
Sbjct: 379 TIIFVETKRKADE-LTRA-MRR 398
Score = 354 (129.7 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 80/200 (40%), Positives = 115/200 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+MF+AT P V LA + + A + +GS+ I Q+V IL E K+ KLME+
Sbjct: 308 RQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 1670 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
LN + + IIFV K+ AD L + + + G+ +HG K Q +R+ L K G
Sbjct: 368 LNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
I++ATDVA RG+D+ D+ VINYD + EDY HRIGRTGR+ K+G A +F T ++
Sbjct: 428 PIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
Query: 1787 FYDLKQMMISSPVSTCPPEL 1806
DL +++ + T P L
Sbjct: 488 AKDLLKVLDEAK-QTVPQAL 506
Score = 353 (129.3 bits), Expect = 2.4e-71, Sum P(2) = 2.4e-71
Identities = 77/188 (40%), Positives = 111/188 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+MF+AT P V LA + + A + +GS+ I Q+V IL E K+ KLME+
Sbjct: 308 RQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 995 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
LN + + IIFV K+ AD L + + + G+ +HG K Q +R+ L K G
Sbjct: 368 LNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
I++ATDVA RG+D+ D+ VINYD + EDY HRIGRTGR+ K+G A +F T ++
Sbjct: 428 PIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASK 487
Query: 1112 FYDLKQMM 1119
DL +++
Sbjct: 488 AKDLLKVL 495
Score = 190 (71.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 46/125 (36%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+MF+AT P V LA + + A + +GS+ I Q+V IL E K+ KLME+
Sbjct: 308 RQTLMFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMEL 367
Query: 301 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
LN + + IIFV K+ AD L + + + G+ +HG K Q +R+ L K G
Sbjct: 368 LNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKT 427
Query: 358 DILMA 362
I++A
Sbjct: 428 PIMLA 432
Score = 46 (21.3 bits), Expect = 4.8e-39, Sum P(2) = 4.8e-39
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+ K+G A +F T ++ DL +++ + T P L
Sbjct: 467 TGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAK-QTVPQAL 506
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 414 (150.8 bits), Expect = 2.7e-71, Sum P(2) = 2.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHP 204
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 414 (150.8 bits), Expect = 2.7e-71, Sum P(2) = 2.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHP 204
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 387 (141.3 bits), Expect = 2.7e-71, Sum P(2) = 2.7e-71
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 544 VLMDLKALLLEAKQKV-PPVL 563
Score = 383 (139.9 bits), Expect = 7.2e-71, Sum P(2) = 7.2e-71
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 544 VLMDLKALLLEA 555
Score = 344 (126.2 bits), Expect = 1.8e-63, Sum P(2) = 1.8e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 196 LKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 256 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 313
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 314 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 210 (79.0 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 358 DILMA 362
D+L+A
Sbjct: 484 DVLVA 488
Score = 64 (27.6 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 523 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 563
Score = 60 (26.2 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 366 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 421
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 482 -KKDVLV------ATDVASKGLD 497
Score = 42 (19.8 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 443
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 444 DVDAIHE 450
Score = 41 (19.5 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 433
Score = 37 (18.1 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 393 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 413 (150.4 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 413 (150.4 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 387 (141.3 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 544 VLMDLKALLLEAKQKV-PPVL 563
Score = 383 (139.9 bits), Expect = 9.9e-71, Sum P(2) = 9.9e-71
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 544 VLMDLKALLLEA 555
Score = 343 (125.8 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 256 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 313
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 314 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 210 (79.0 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 358 DILMA 362
D+L+A
Sbjct: 484 DVLVA 488
Score = 64 (27.6 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 523 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 563
Score = 60 (26.2 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 366 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 421
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 482 -KKDVLV------ATDVASKGLD 497
Score = 42 (19.8 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 443
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 444 DVDAIHE 450
Score = 41 (19.5 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 433
Score = 37 (18.1 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 393 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 413 (150.4 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 413 (150.4 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 387 (141.3 bits), Expect = 3.7e-71, Sum P(2) = 3.7e-71
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 544 VLMDLKALLLEAKQKV-PPVL 563
Score = 383 (139.9 bits), Expect = 9.9e-71, Sum P(2) = 9.9e-71
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 544 VLMDLKALLLEA 555
Score = 343 (125.8 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 256 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 313
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 314 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 210 (79.0 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 358 DILMA 362
D+L+A
Sbjct: 484 DVLVA 488
Score = 64 (27.6 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 523 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 563
Score = 60 (26.2 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 366 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 421
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 482 -KKDVLV------ATDVASKGLD 497
Score = 42 (19.8 bits), Expect = 7.3e-35, Sum P(2) = 7.3e-35
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 443
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 444 DVDAIHE 450
Score = 41 (19.5 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 433
Score = 37 (18.1 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 393 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 413 (150.4 bits), Expect = 6.2e-71, Sum P(2) = 6.2e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 164 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 222
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 223 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 281
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 282 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 340
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 341 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 382
Score = 413 (150.4 bits), Expect = 6.2e-71, Sum P(2) = 6.2e-71
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 164 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 222
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 223 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 281
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 282 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 340
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 341 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 382
Score = 387 (141.3 bits), Expect = 6.2e-71, Sum P(2) = 6.2e-71
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 384 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 442
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 443 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 501
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 502 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 561
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 562 VLMDLKALLLEAKQKV-PPVL 581
Score = 383 (139.9 bits), Expect = 1.6e-70, Sum P(2) = 1.6e-70
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 384 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 442
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 443 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 501
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 502 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 561
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 562 VLMDLKALLLEA 573
Score = 343 (125.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 214 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 273
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 274 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 331
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 332 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 382
Score = 210 (79.0 bits), Expect = 4.9e-46, Sum P(3) = 4.9e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 384 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 442
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 443 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 501
Query: 358 DILMA 362
D+L+A
Sbjct: 502 DVLVA 506
Score = 64 (27.6 bits), Expect = 4.9e-46, Sum P(3) = 4.9e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 541 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 581
Score = 60 (26.2 bits), Expect = 2.0e-30, Sum P(3) = 2.0e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 384 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 439
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 440 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 499
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 500 -KKDVLV------ATDVASKGLD 515
Score = 42 (19.8 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 402 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 461
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 462 DVDAIHE 468
Score = 41 (19.5 bits), Expect = 7.6e-37, Sum P(3) = 7.6e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 402 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 451
Score = 37 (18.1 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 411 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 454
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 413 (150.4 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 413 (150.4 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 146 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 204
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 205 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 263
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 264 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 322
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 323 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 387 (141.3 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 544 VLMDLKALLLEAKQKV-PPVL 563
Score = 383 (139.9 bits), Expect = 4.5e-70, Sum P(3) = 4.5e-70
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 484 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 543
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 544 VLMDLKALLLEA 555
Score = 343 (125.8 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 196 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 256 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 313
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 314 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 364
Score = 210 (79.0 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 366 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 425 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 483
Query: 358 DILMA 362
D+L+A
Sbjct: 484 DVLVA 488
Score = 64 (27.6 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 523 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 563
Score = 60 (26.2 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 366 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 421
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 422 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 482 -KKDVLV------ATDVASKGLD 497
Score = 42 (19.8 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 443
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 444 DVDAIHE 450
Score = 41 (19.5 bits), Expect = 3.8e-37, Sum P(4) = 3.8e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 384 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 433
Score = 37 (18.1 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 156 EPDVQKI-LEYMPVTNLKPDTEDAEDE 181
EP+ ++ + + T + +TED +DE
Sbjct: 5 EPERKRARTDEVTATGSRSETEDEDDE 31
Score = 37 (18.1 bits), Expect = 1.7e-70, Sum P(3) = 1.7e-70
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 897 EPDVQKI-LEYMPVTNLKPDTEDAEDE 922
EP+ ++ + + T + +TED +DE
Sbjct: 5 EPERKRARTDEVTATGSRSETEDEDDE 31
Score = 37 (18.1 bits), Expect = 6.0e-34, Sum P(3) = 6.0e-34
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 393 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 436
Score = 37 (18.1 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 1572 EPDVQKI-LEYMPVTNLKPDTEDAEDE 1597
EP+ ++ + + T + +TED +DE
Sbjct: 5 EPERKRARTDEVTATGSRSETEDEDDE 31
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 420 (152.9 bits), Expect = 3.1e-70, Sum P(3) = 3.1e-70
Identities = 94/215 (43%), Positives = 141/215 (65%)
Query: 698 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYA 749
S+ + +WR +E+Y+I +K G+ +P+P N+++A P E++ IEK G+
Sbjct: 206 SMSQEQVDNWR--KENYNIICDDLKDGEKRPLPNPTCNFEDAFHCYP-EVMRNIEKAGFQ 262
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + I S P + R A GP +
Sbjct: 263 KPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQR---ARNGPGML 319
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
++ PTRELA Q++ E +++ G+++V + GG R+ Q L G +I+IATPGRL D+
Sbjct: 320 VLTPTRELALQVDAECSEYSYR-GLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHDL 378
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
N ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 379 QMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL 413
Score = 420 (152.9 bits), Expect = 1.0e-69, Sum P(2) = 1.0e-69
Identities = 94/215 (43%), Positives = 141/215 (65%)
Query: 1373 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYA 1424
S+ + +WR +E+Y+I +K G+ +P+P N+++A P E++ IEK G+
Sbjct: 206 SMSQEQVDNWR--KENYNIICDDLKDGEKRPLPNPTCNFEDAFHCYP-EVMRNIEKAGFQ 262
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + I S P + R A GP +
Sbjct: 263 KPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQR---ARNGPGML 319
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
++ PTRELA Q++ E +++ G+++V + GG R+ Q L G +I+IATPGRL D+
Sbjct: 320 VLTPTRELALQVDAECSEYSYR-GLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHDL 378
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
N ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 379 QMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL 413
Score = 388 (141.6 bits), Expect = 6.3e-66, Sum P(4) = 6.3e-66
Identities = 80/162 (49%), Positives = 112/162 (69%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IEK G+ +PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + I S P + R A
Sbjct: 256 IEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQR---A 312
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA Q++ E +++ G+++V + GG R+ Q L G +I+IAT
Sbjct: 313 RNGPGMLVLTPTRELALQVDAECSEYSYR-GLKSVCIYGGGDRDGQIKDLSKGADIIIAT 371
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 372 PGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL 413
Score = 368 (134.6 bits), Expect = 1.0e-69, Sum P(2) = 1.0e-69
Identities = 85/221 (38%), Positives = 133/221 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 1669
RQTVM +AT P AV RLA+SYL+ P VY+G++ + Q + + +E +KR +
Sbjct: 420 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAF 479
Query: 1670 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ K VIIFV++K AD L+ L + +LHG + Q RE AL S K G I
Sbjct: 480 IDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V NYD ++IE+Y HR+GRTGRAG+ G++++ T++D +
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAG 599
Query: 1789 DLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEK 1829
+L ++ + S P +L++ + ++K + KK E K
Sbjct: 600 ELINILERANQSV-PEDLVSMAE-RYKANKL---KKETENK 635
Score = 364 (133.2 bits), Expect = 3.1e-70, Sum P(3) = 3.1e-70
Identities = 76/175 (43%), Positives = 112/175 (64%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 994
RQTVM +AT P AV RLA+SYL+ P VY+G++ + Q + + +E +KR +
Sbjct: 420 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAF 479
Query: 995 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ K VIIFV++K AD L+ L + +LHG + Q RE AL S K G I
Sbjct: 480 IDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V NYD ++IE+Y HR+GRTGRAG+ G++++ T++D
Sbjct: 540 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRND 594
Score = 195 (73.7 bits), Expect = 1.5e-48, Sum P(3) = 1.5e-48
Identities = 49/123 (39%), Positives = 70/123 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 300
RQTVM +AT P AV RLA+SYL+ P VY+G++ + Q + + +E +KR +
Sbjct: 420 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAF 479
Query: 301 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ K VIIFV++K AD L+ L + +LHG + Q RE AL S K G I
Sbjct: 480 IDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRI 539
Query: 360 LMA 362
L+A
Sbjct: 540 LIA 542
Score = 53 (23.7 bits), Expect = 3.1e-70, Sum P(3) = 3.1e-70
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
TGRAG+ G++++ T++D + +L ++ + S P +L++
Sbjct: 577 TGRAGRTGVSITLITRNDWKIAGELINILERANQSV-PEDLVS 618
Score = 43 (20.2 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 614 DASEDTSVDY-NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 661
D + + D+ +I + H+V GR G+ I R+ K GE++
Sbjct: 554 DVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELI 602
Score = 43 (20.2 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 1289 DASEDTSVDY-NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 1336
D + + D+ +I + H+V GR G+ I R+ K GE++
Sbjct: 554 DVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELI 602
Score = 39 (18.8 bits), Expect = 6.3e-66, Sum P(4) = 6.3e-66
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 195 RQTVMFTATMPPA 207
RQTVM +AT P A
Sbjct: 420 RQTVMTSATWPYA 432
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 672 (241.6 bits), Expect = 3.4e-70, Sum P(3) = 3.4e-70
Identities = 160/425 (37%), Positives = 239/425 (56%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
ED + G VP + ++ + L TEI+ + Y +PTP+Q+ AIPI + RD++
Sbjct: 279 EDIPVEATGQNVPPNITSFDDVQL-TEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMA 337
Query: 771 VAETGSGKTLAFLLPLLVWIQSL-----PKIARMEDA-DQGPYAIIMAPTRELAQQIEEE 824
A+TGSGKT AFL+P+L + L P+ R Q P +++APTRELA QI EE
Sbjct: 338 CAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEE 397
Query: 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884
KF +R ++ GG + EQ L GC +++ATPGRL D++ + L ++V
Sbjct: 398 AKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLV 457
Query: 885 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 944
LDEADRM+DMGFEP +++I+E + N+ P + RQT+MF+AT
Sbjct: 458 LDEADRMLDMGFEPQIRRIVEQL---NMPPTGQ------------------RQTLMFSAT 496
Query: 945 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP-- 1002
P ++ LA +L + +G VG +E I Q + + E DKR L+++L+ P
Sbjct: 497 FPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEY 556
Query: 1003 -----VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1057
+IFV KKGAD L + L + + ++HG + Q++RE AL + G ILVAT
Sbjct: 557 TKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVAT 616
Query: 1058 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
VA RG+DI V VIN+D+ +E+Y HRIGRTGR G G+A SF + + ++ DL +
Sbjct: 617 AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLE 676
Query: 1118 MMISS 1122
++I +
Sbjct: 677 LLIET 681
Score = 672 (241.6 bits), Expect = 5.5e-67, Sum P(2) = 5.5e-67
Identities = 160/425 (37%), Positives = 239/425 (56%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEI-IEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
ED + G VP + ++ + L TEI+ + Y +PTP+Q+ AIPI + RD++
Sbjct: 279 EDIPVEATGQNVPPNITSFDDVQL-TEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMA 337
Query: 1446 VAETGSGKTLAFLLPLLVWIQSL-----PKIARMEDA-DQGPYAIIMAPTRELAQQIEEE 1499
A+TGSGKT AFL+P+L + L P+ R Q P +++APTRELA QI EE
Sbjct: 338 CAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEE 397
Query: 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559
KF +R ++ GG + EQ L GC +++ATPGRL D++ + L ++V
Sbjct: 398 AKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLV 457
Query: 1560 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTAT 1619
LDEADRM+DMGFEP +++I+E + N+ P + RQT+MF+AT
Sbjct: 458 LDEADRMLDMGFEPQIRRIVEQL---NMPPTGQ------------------RQTLMFSAT 496
Query: 1620 MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP-- 1677
P ++ LA +L + +G VG +E I Q + + E DKR L+++L+ P
Sbjct: 497 FPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEY 556
Query: 1678 -----VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT 1732
+IFV KKGAD L + L + + ++HG + Q++RE AL + G ILVAT
Sbjct: 557 TKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVAT 616
Query: 1733 DVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
VA RG+DI V VIN+D+ +E+Y HRIGRTGR G G+A SF + + ++ DL +
Sbjct: 617 AVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLE 676
Query: 1793 MMISS 1797
++I +
Sbjct: 677 LLIET 681
Score = 350 (128.3 bits), Expect = 2.9e-42, Sum P(4) = 2.9e-42
Identities = 76/171 (44%), Positives = 107/171 (62%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-----PKIARMEDA 61
Y +PTP+Q+ AIPI + RD++ A+TGSGKT AFL+P+L + L P+ R
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374
Query: 62 -DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P +++APTRELA QI EE KF +R ++ GG + EQ L GC +++A
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 434
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY--MPVT 169
TPGRL D++ + L ++VLDEADRM+DMGFEP +++I+E MP T
Sbjct: 435 TPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPT 485
Score = 184 (69.8 bits), Expect = 2.9e-42, Sum P(4) = 2.9e-42
Identities = 45/128 (35%), Positives = 70/128 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+MF+AT P ++ LA +L + +G VG +E I Q + + E DKR L+++L
Sbjct: 488 RQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLL 547
Query: 302 NRGVKKP-------VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 354
+ P +IFV KKGAD L + L + + ++HG + Q++RE AL +
Sbjct: 548 SSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS 607
Query: 355 GSKDILMA 362
G IL+A
Sbjct: 608 GDCPILVA 615
Score = 55 (24.4 bits), Expect = 3.4e-70, Sum P(3) = 3.4e-70
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGR G G+A SF + + ++ DL +++I +
Sbjct: 650 TGRMGNLGVATSFFNEKNRNICSDLLELLIET 681
Score = 51 (23.0 bits), Expect = 3.4e-70, Sum P(3) = 3.4e-70
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 613 WDASEDTSVDYNSI--YKERHQVQFFGRGNIAGID 645
W ++VDY + ER +V+ FG GN GI+
Sbjct: 241 WKEGGGSNVDYTKLGARDERLEVELFGVGN-TGIN 274
Score = 51 (23.0 bits), Expect = 5.5e-67, Sum P(2) = 5.5e-67
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 1288 WDASEDTSVDYNSI--YKERHQVQFFGRGNIAGID 1320
W ++VDY + ER +V+ FG GN GI+
Sbjct: 241 WKEGGGSNVDYTKLGARDERLEVELFGVGN-TGIN 274
Score = 44 (20.5 bits), Expect = 2.9e-42, Sum P(4) = 2.9e-42
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 488 RQTLMFSATFP 498
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 413 (150.4 bits), Expect = 5.0e-70, Sum P(3) = 5.0e-70
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 694 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 173 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 231
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 232 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 290
Query: 812 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 864
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 291 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 349
Query: 865 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 350 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 391
Score = 413 (150.4 bits), Expect = 5.0e-70, Sum P(3) = 5.0e-70
Identities = 92/222 (41%), Positives = 133/222 (59%)
Query: 1369 WTEKS--LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
WT L ER R+ R+ Y I ++G +P P++++KE P IL ++K G P
Sbjct: 173 WTPPRYVLSMSEERHERV-RKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHP 231
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K + GPY +I+
Sbjct: 232 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLII 290
Query: 1487 APTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 1539
P+RELA+Q + +PL +R L +GG+S +EQ +R G +++ATPG
Sbjct: 291 CPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHGVHMMVATPG 349
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
RL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 350 RLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 391
Score = 387 (141.3 bits), Expect = 5.0e-70, Sum P(3) = 5.0e-70
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 1666
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 393 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 451
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 452 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 510
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 511 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 570
Query: 1786 LFYDLKQMMISSPVSTCPPEL 1806
+ DLK +++ + PP L
Sbjct: 571 VLMDLKALLLEAKQKV-PPVL 590
Score = 383 (139.9 bits), Expect = 1.3e-69, Sum P(3) = 1.3e-69
Identities = 78/192 (40%), Positives = 119/192 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 991
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 393 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 451
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 452 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 510
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
D+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D
Sbjct: 511 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDES 570
Query: 1111 LFYDLKQMMISS 1122
+ DLK +++ +
Sbjct: 571 VLMDLKALLLEA 582
Score = 343 (125.8 bits), Expect = 3.8e-63, Sum P(2) = 3.8e-63
Identities = 75/171 (43%), Positives = 107/171 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 223 LKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 282
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF-------GTPLGIRTVLVVGGLSREEQGFRLRLG 114
+ GPY +I+ P+RELA+Q + +PL +R L +GG+S +EQ +R G
Sbjct: 283 E-GPYGLIICPSRELARQTHGILEYYCRLLQEDSSPL-LRCALCIGGMSVKEQMETIRHG 340
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 341 VHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 391
Score = 210 (79.0 bits), Expect = 5.7e-46, Sum P(3) = 5.7e-46
Identities = 45/125 (36%), Positives = 74/125 (59%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++ Y+ E+ K L
Sbjct: 393 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYV-KEEAKMVYL 451
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G K
Sbjct: 452 LECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 510
Query: 358 DILMA 362
D+L+A
Sbjct: 511 DVLVA 515
Score = 64 (27.6 bits), Expect = 5.7e-46, Sum P(3) = 5.7e-46
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 550 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 590
Score = 60 (26.2 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 393 KGQRQTLLFSATMPK-KIQNFAKSALVKPVTINVGRAGAASLDVIQEVEY---VKEEAKM 448
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 449 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 508
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 509 -KKDVLV------ATDVASKGLD 524
Score = 42 (19.8 bits), Expect = 5.2e-34, Sum P(3) = 5.2e-34
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 411 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 470
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 471 DVDAIHE 477
Score = 41 (19.5 bits), Expect = 1.5e-36, Sum P(4) = 1.5e-36
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 411 NFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 460
Score = 37 (18.1 bits), Expect = 5.0e-70, Sum P(3) = 5.0e-70
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 176 EDAEDENKLLANYNSKKKYRQTVMFTATMPPAKI----LEYMPVTNLKPDTEDAEDE 228
ED+E E K+ A S + + + + P + + + T + +TED +DE
Sbjct: 2 EDSEPERKVGARPVSARVAGGSESRSLSFPHVYLQRARTDEVTATGSRSETEDEDDE 58
Score = 37 (18.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1123 PVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
PVT G+ G A ++ ++ + K + + + PP +L
Sbjct: 420 PVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVL 463
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 425 (154.7 bits), Expect = 5.7e-70, Sum P(2) = 5.7e-70
Identities = 93/227 (40%), Positives = 147/227 (64%)
Query: 698 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA-SLPTEILEIIEKIGYAE 750
S+ + ++WR +E+Y+I +K G+ +P+P +++A E++ I+K G+ +
Sbjct: 206 SMSQEQVQNWR--KENYNIMCDDLKDGEKRPIPNPACKFEDAFQCYPEVMINIKKAGFQK 263
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + + S P + ++ A GP ++
Sbjct: 264 PTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLV 323
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTRELA Q+E E +K+ G+++V V GG R+ Q L G +I+IATPGRL D+
Sbjct: 324 LTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQ 382
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
N ++ L +Y+VLDEAD+M+DMGFEP + KIL +++PD +
Sbjct: 383 MNNFVYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPDRQ 424
Score = 425 (154.7 bits), Expect = 5.7e-70, Sum P(2) = 5.7e-70
Identities = 93/227 (40%), Positives = 147/227 (64%)
Query: 1373 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA-SLPTEILEIIEKIGYAE 1425
S+ + ++WR +E+Y+I +K G+ +P+P +++A E++ I+K G+ +
Sbjct: 206 SMSQEQVQNWR--KENYNIMCDDLKDGEKRPIPNPACKFEDAFQCYPEVMINIKKAGFQK 263
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + + S P + ++ A GP ++
Sbjct: 264 PTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLV 323
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTRELA Q+E E +K+ G+++V V GG R+ Q L G +I+IATPGRL D+
Sbjct: 324 LTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQ 382
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
N ++ L +Y+VLDEAD+M+DMGFEP + KIL +++PD +
Sbjct: 383 MNNFVYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPDRQ 424
Score = 396 (144.5 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 81/175 (46%), Positives = 119/175 (68%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K G+ +PTPIQ QA PI LQ D+IGVA+TG+GKTL++L+P + + S P + ++ A
Sbjct: 256 IKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRA 315
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA Q+E E +K+ G+++V V GG R+ Q L G +I+IAT
Sbjct: 316 RNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCVYGGGDRDGQIKDLLKGVDIIIAT 374
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRL D+ N ++ L +Y+VLDEAD+M+DMGFEP + KIL +++PD +
Sbjct: 375 PGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKIL-----LDIRPDRQ 424
Score = 365 (133.5 bits), Expect = 5.7e-70, Sum P(2) = 5.7e-70
Identities = 84/222 (37%), Positives = 134/222 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 1669
RQTVM +AT P AV RLA+SYL+ P VY+G++ ++Q + + +E +KR +
Sbjct: 423 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTF 482
Query: 1670 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ + K VIIFV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 483 IESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V NYD ++IE+Y HR+GRTGRAG+ G++++ T+ D +
Sbjct: 543 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAG 602
Query: 1789 DLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEKI 1830
+L ++ + S P +L+ + ++K + KK E+K+
Sbjct: 603 ELIHILERANQSI-PEDLVEMAE-RYKANKL---KKEMEKKL 639
Score = 360 (131.8 bits), Expect = 1.9e-69, Sum P(2) = 1.9e-69
Identities = 75/175 (42%), Positives = 112/175 (64%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 994
RQTVM +AT P AV RLA+SYL+ P VY+G++ ++Q + + +E +KR +
Sbjct: 423 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTF 482
Query: 995 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ + K VIIFV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 483 IESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V NYD ++IE+Y HR+GRTGRAG+ G++++ T+ D
Sbjct: 543 LIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSD 597
Score = 192 (72.6 bits), Expect = 5.6e-49, Sum P(3) = 5.6e-49
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 300
RQTVM +AT P AV RLA+SYL+ P VY+G++ ++Q + + +E +KR +
Sbjct: 423 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTF 482
Query: 301 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ + K VIIFV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 483 IESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRI 542
Query: 360 LMA 362
L+A
Sbjct: 543 LIA 545
Score = 51 (23.0 bits), Expect = 5.6e-49, Sum P(3) = 5.6e-49
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG+ G++++ T+ D
Sbjct: 580 TGRAGRTGVSITLITRSD 597
Score = 42 (19.8 bits), Expect = 4.9e-48, Sum P(3) = 4.9e-48
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 614 DASEDTSVDY-NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 661
D + + D+ +I + H+V GR G+ I R K GE++
Sbjct: 557 DVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELI 605
Score = 42 (19.8 bits), Expect = 4.9e-48, Sum P(3) = 4.9e-48
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 1289 DASEDTSVDY-NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEML 1336
D + + D+ +I + H+V GR G+ I R K GE++
Sbjct: 557 DVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELI 605
Score = 42 (19.8 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 32/137 (23%), Positives = 61/137 (44%)
Query: 195 RQTVMFTATMPPA--KILE-YM--P----VTNLKPDTEDAEDENKLLANYNSKKKYRQTV 245
RQTVM +AT P A ++ + Y+ P V L +N ++ + K+ + QT
Sbjct: 423 RQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQT- 481
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGS-VGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
F +M P +++ R+ ++ S +G +E + + EQ R++ ++ G
Sbjct: 482 -FIESMSPK-DKVIIFVSRKAVADHLSSDLGIRHISVESL-HGNREQGDRERALKNFKTG 538
Query: 305 VKKPVIIFVNQKKGADV 321
+ +I +G DV
Sbjct: 539 KVRILIATDLASRGLDV 555
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 431 (156.8 bits), Expect = 6.8e-70, Sum P(2) = 6.8e-70
Identities = 90/208 (43%), Positives = 131/208 (62%)
Query: 711 REDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R ITI+G + P PV + + S P +++ + + EPTPIQ Q P+ L RD++
Sbjct: 72 RRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMV 131
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 132 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 187
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE L +CTY+VLDEAD
Sbjct: 188 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEAD 247
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 248 RMLDMGFEPQIRKIVD-----QIRPDRQ 270
Score = 431 (156.8 bits), Expect = 6.8e-70, Sum P(2) = 6.8e-70
Identities = 90/208 (43%), Positives = 131/208 (62%)
Query: 1386 REDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R ITI+G + P PV + + S P +++ + + EPTPIQ Q P+ L RD++
Sbjct: 72 RRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMV 131
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 132 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 187
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE L +CTY+VLDEAD
Sbjct: 188 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEAD 247
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 248 RMLDMGFEPQIRKIVD-----QIRPDRQ 270
Score = 396 (144.5 bits), Expect = 2.1e-67, Sum P(3) = 2.1e-67
Identities = 80/170 (47%), Positives = 113/170 (66%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 110 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 165
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 166 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 225
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 226 DFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 270
Score = 323 (118.8 bits), Expect = 6.8e-70, Sum P(2) = 6.8e-70
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +L+ + +G++ I QIV + E +K KL+++
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 328
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 329 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 388
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 389 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 442
Score = 323 (118.8 bits), Expect = 6.8e-70, Sum P(2) = 6.8e-70
Identities = 69/174 (39%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +L+ + +G++ I QIV + E +K KL+++
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 328
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 329 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 388
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 389 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 442
Score = 168 (64.2 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 40/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +L+ + +G++ I QIV + E +K KL+++
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 328
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 329 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 388
Query: 358 DILMA 362
IL+A
Sbjct: 389 PILIA 393
Score = 38 (18.4 bits), Expect = 2.1e-67, Sum P(3) = 2.1e-67
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+M++AT P
Sbjct: 269 RQTLMWSATWP 279
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 401 (146.2 bits), Expect = 7.3e-70, Sum P(2) = 7.3e-70
Identities = 86/211 (40%), Positives = 128/211 (60%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
M+E R+ Y I ++G +P P++++KE P IL ++K G +PTPIQ Q IP
Sbjct: 151 MSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPT 210
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
L RD+IG+A TGSGKTL F LP++++ K + GPY +I+ P+RELA+Q
Sbjct: 211 ILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLIICPSRELARQT 269
Query: 822 EEETNKFGTPLG------IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 875
+ L +R L +GG+S +EQ ++ G +++ATPGRL+D+L+ + +
Sbjct: 270 HGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMV 329
Query: 876 VLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 330 SLDICRYLALDEADRMIDMGFEGDIRTIFSY 360
Score = 401 (146.2 bits), Expect = 7.3e-70, Sum P(2) = 7.3e-70
Identities = 86/211 (40%), Positives = 128/211 (60%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
M+E R+ Y I ++G +P P++++KE P IL ++K G +PTPIQ Q IP
Sbjct: 151 MSEARHNRVRKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPT 210
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
L RD+IG+A TGSGKTL F LP++++ K + GPY +I+ P+RELA+Q
Sbjct: 211 ILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKRE-GPYGLIICPSRELARQT 269
Query: 1497 EEETNKFGTPLG------IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 1550
+ L +R L +GG+S +EQ ++ G +++ATPGRL+D+L+ + +
Sbjct: 270 HGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMV 329
Query: 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 330 SLDICRYLALDEADRMIDMGFEGDIRTIFSY 360
Score = 387 (141.3 bits), Expect = 7.3e-70, Sum P(2) = 7.3e-70
Identities = 81/200 (40%), Positives = 119/200 (59%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K RQT++F+ATMP ++ A+S L +P T+ +G G + + Q V + E+ K L+
Sbjct: 362 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL 421
Query: 1668 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G KD
Sbjct: 422 ECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKD 480
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1786
+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D +
Sbjct: 481 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESV 540
Query: 1787 FYDLKQMMISSPVSTCPPEL 1806
DLK +++ + PP L
Sbjct: 541 LMDLKALLLEAKQKV-PPVL 559
Score = 383 (139.9 bits), Expect = 1.9e-69, Sum P(2) = 1.9e-69
Identities = 78/191 (40%), Positives = 116/191 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K RQT++F+ATMP ++ A+S L +P T+ +G G + + Q V + E+ K L+
Sbjct: 362 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL 421
Query: 993 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G KD
Sbjct: 422 ECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKD 480
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHL 1111
+LVATDVA +G+D + VINYDM + IE+Y HRIGRTGR+G G+A +F K D +
Sbjct: 481 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESV 540
Query: 1112 FYDLKQMMISS 1122
DLK +++ +
Sbjct: 541 LMDLKALLLEA 551
Score = 337 (123.7 bits), Expect = 7.1e-63, Sum P(2) = 7.1e-63
Identities = 73/170 (42%), Positives = 106/170 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G +PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K
Sbjct: 192 LKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKR 251
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLG------IRTVLVVGGLSREEQGFRLRLGC 115
+ GPY +I+ P+RELA+Q + L +R L +GG+S +EQ ++ G
Sbjct: 252 E-GPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQMETIKHGV 310
Query: 116 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
+++ATPGRL+D+L+ + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 311 HMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY 360
Score = 210 (79.0 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 45/124 (36%), Positives = 71/124 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K RQT++F+ATMP ++ A+S L +P T+ +G G + + Q V + E+ K L+
Sbjct: 362 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL 421
Query: 299 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
E L + PV+IF +K D + + L G A +HGGK QE+R A+ + + G KD
Sbjct: 422 ECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKD 480
Query: 359 ILMA 362
+L+A
Sbjct: 481 VLVA 484
Score = 64 (27.6 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+G G+A +F K D + DLK +++ + PP L
Sbjct: 519 TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV-PPVL 559
Score = 58 (25.5 bits), Expect = 8.6e-30, Sum P(3) = 8.6e-30
Identities = 36/143 (25%), Positives = 63/143 (44%)
Query: 192 KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K RQT++F+ATMP KI + +KP T + + + +Y V A M
Sbjct: 362 KGQRQTLLFSATMPK-KIQNFAKSALVKPITINVGRAGAASLDVVQEVEY---VKEEAKM 417
Query: 252 PPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRG 304
+E L ++ + + A V + +E + ++ +Q++R K +E G
Sbjct: 418 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDG 477
Query: 305 VKKPVIIFVNQKKGADVLAKGLE 327
KK V++ DV +KGL+
Sbjct: 478 -KKDVLV------ATDVASKGLD 493
Score = 41 (19.5 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 380 NFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 439
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 440 DVDAIHE 446
Score = 40 (19.1 bits), Expect = 8.9e-36, Sum P(3) = 8.9e-36
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 380 NFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLECLQKTPP 429
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 464 (168.4 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 94/208 (45%), Positives = 138/208 (66%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+RE+ IT++G +VP+P++++ E LP +++ I + GY PT IQ Q PI + + +
Sbjct: 264 YREEQEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFV 322
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTL ++LP +V I + + R + GP A+++APTRELAQQI++ +FG
Sbjct: 323 GIAKTGSGKTLGYILPAIVHINNQQPLQRGD----GPIALVLAPTRELAQQIQQVATEFG 378
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+ +R V GG + Q L+ GCEIVIATPGRLID L L +CTY+VLDEAD
Sbjct: 379 SSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEAD 438
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI V+ ++PD +
Sbjct: 439 RMLDMGFEPQIRKI-----VSQIRPDRQ 461
Score = 464 (168.4 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 94/208 (45%), Positives = 138/208 (66%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+RE+ IT++G +VP+P++++ E LP +++ I + GY PT IQ Q PI + + +
Sbjct: 264 YREEQEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFV 322
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTL ++LP +V I + + R + GP A+++APTRELAQQI++ +FG
Sbjct: 323 GIAKTGSGKTLGYILPAIVHINNQQPLQRGD----GPIALVLAPTRELAQQIQQVATEFG 378
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+ +R V GG + Q L+ GCEIVIATPGRLID L L +CTY+VLDEAD
Sbjct: 379 SSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEAD 438
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI V+ ++PD +
Sbjct: 439 RMLDMGFEPQIRKI-----VSQIRPDRQ 461
Score = 398 (145.2 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 83/175 (47%), Positives = 114/175 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + GY PT IQ Q PI + + +G+A+TGSGKTL ++LP +V I + + R +
Sbjct: 296 IRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGD-- 353
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP A+++APTRELAQQI++ +FG+ +R V GG + Q L+ GCEIVIAT
Sbjct: 354 --GPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIAT 411
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID L L +CTY+VLDEADRM+DMGFEP ++KI V+ ++PD +
Sbjct: 412 PGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKI-----VSQIRPDRQ 461
Score = 313 (115.2 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 68/180 (37%), Positives = 104/180 (57%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V++LA +L + IGS+ I Q+V + E K +KL +
Sbjct: 460 RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTL 519
Query: 995 LNR---GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
L+ + P +IIFV K+ D L + + G +HG K Q +R+ L + G
Sbjct: 520 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 579
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+ILVATDVA RG+D+ + VIN+D ++ EDY HRIGRTGR+ +G + +F TK+++
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Score = 313 (115.2 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 68/180 (37%), Positives = 104/180 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V++LA +L + IGS+ I Q+V + E K +KL +
Sbjct: 460 RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTL 519
Query: 1670 LNR---GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
L+ + P +IIFV K+ D L + + G +HG K Q +R+ L + G
Sbjct: 520 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 579
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+ILVATDVA RG+D+ + VIN+D ++ EDY HRIGRTGR+ +G + +F TK+++
Sbjct: 580 KSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNA 639
Score = 163 (62.4 bits), Expect = 5.4e-44, Sum P(4) = 5.4e-44
Identities = 41/127 (32%), Positives = 65/127 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V++LA +L + IGS+ I Q+V + E K +KL +
Sbjct: 460 RQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTL 519
Query: 301 LNR---GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 355
L+ + P +IIFV K+ D L + + G +HG K Q +R+ L + G
Sbjct: 520 LSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSG 579
Query: 356 SKDILMA 362
+IL+A
Sbjct: 580 KSNILVA 586
Score = 57 (25.1 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 235 YNSKKKYRQTVMFTAT---MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 291
++ ++ R+T++F +T + +R R + + Y+ S+ K +R + ++
Sbjct: 73 FHGSRRNRETILFPSTYSSLQAQSQRAFRDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDP 132
Query: 292 DKRKKLMEVLNRGVKKP 308
D+R + E+ GV P
Sbjct: 133 DERTE--EIKIEGVMAP 147
Score = 57 (25.1 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 16/77 (20%), Positives = 37/77 (48%)
Query: 929 YNSKKKYRQTVMFTAT---MPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQ 985
++ ++ R+T++F +T + +R R + + Y+ S+ K +R + ++
Sbjct: 73 FHGSRRNRETILFPSTYSSLQAQSQRAFRDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDP 132
Query: 986 DKRKKLMEVLNRGVKKP 1002
D+R + E+ GV P
Sbjct: 133 DERTE--EIKIEGVMAP 147
Score = 42 (19.8 bits), Expect = 3.2e-68, Sum P(3) = 3.2e-68
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 188 YNSKKKYRQTVMFTATMPPAKILEYMPVTNL-KPDTEDAED 227
++ ++ R+T++F +T + + KPD++D D
Sbjct: 73 FHGSRRNRETILFPSTYSSLQAQSQRAFRDSSKPDSDDYVD 113
Score = 42 (19.8 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---LG-C 1531
D + P II+ E ++++ +F G+R + G S+ E+ F LR G
Sbjct: 525 DTSESPGKIIIFV--ETKRRVDNLV-RFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 581
Query: 1532 EIVIATP--GRLIDVLENRYLV 1551
I++AT R +DV +Y++
Sbjct: 582 NILVATDVAARGLDVDGIKYVI 603
Score = 42 (19.8 bits), Expect = 1.6e-31, Sum P(4) = 1.6e-31
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---LG-C 856
D + P II+ E ++++ +F G+R + G S+ E+ F LR G
Sbjct: 525 DTSESPGKIIIFV--ETKRRVDNLV-RFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 581
Query: 857 EIVIATP--GRLIDVLENRYLV 876
I++AT R +DV +Y++
Sbjct: 582 NILVATDVAARGLDVDGIKYVI 603
Score = 40 (19.1 bits), Expect = 5.4e-44, Sum P(4) = 5.4e-44
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 1125 TGRAGKEGLAVSFCTKDDS 1143
TGR+ +G + +F TK+++
Sbjct: 621 TGRSNTKGTSFAFFTKNNA 639
Score = 38 (18.4 bits), Expect = 6.9e-60, Sum P(3) = 6.9e-60
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+M++AT P
Sbjct: 460 RQTLMWSATWP 470
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 396 (144.5 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 84/214 (39%), Positives = 130/214 (60%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQI 1653
E++ + + +Y K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++
Sbjct: 206 EEDIRTIFSYF--KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEV 263
Query: 1654 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713
Y+ E+ K L+E L + PV+IF +K D + + L G A +HGGK QE+
Sbjct: 264 EYV-KEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEE 321
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
R A+ + K G KD+LVATDVA +G+D + V+NYDM + IE+Y HRIGRTGR+GK G
Sbjct: 322 RTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTG 381
Query: 1774 LAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1806
+A +F K D + DLK +++ + PP L
Sbjct: 382 IATTFINKGCDESVLMDLKALLVEAKQKV-PPVL 414
Score = 392 (143.0 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 81/205 (39%), Positives = 127/205 (61%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQI 978
E++ + + +Y K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++
Sbjct: 206 EEDIRTIFSYF--KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEV 263
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
Y+ E+ K L+E L + PV+IF +K D + + L G A +HGGK QE+
Sbjct: 264 EYV-KEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEE 321
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
R A+ + K G KD+LVATDVA +G+D + V+NYDM + IE+Y HRIGRTGR+GK G
Sbjct: 322 RTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTG 381
Query: 1099 LAVSFCTKD-DSHLFYDLKQMMISS 1122
+A +F K D + DLK +++ +
Sbjct: 382 IATTFINKGCDESVLMDLKALLVEA 406
Score = 356 (130.4 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 82/206 (39%), Positives = 123/206 (59%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
R+ Y I ++G +P P+++++E P IL+ ++K G PTPIQ Q IP L RD+IG
Sbjct: 20 RKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIG 79
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD-QGPYAIIMAPTRELAQQIEEETNKF- 828
+A TGSGKTL F LP++++ K R+ +GPY +I+ P+ +A+ ++
Sbjct: 80 IAFTGSGKTLVFTLPIIMFCLEQEK--RLPFCKREGPYGLIICPSVNVAKHTHHGIIEYY 137
Query: 829 -------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIV-IATPGRLIDVLENRYLVLNQC 880
G P +R L +GG+S +EQ E+V +ATPGRL+D+L + + L+ C
Sbjct: 138 CKLLEDEGAPQ-MRCALCIGGMSVKEQ-------MEVVKLATPGRLMDLLNKKMVSLDIC 189
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEY 906
Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 190 RYLALDEADRMIDMGFEEDIRTIFSY 215
Score = 356 (130.4 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 82/206 (39%), Positives = 123/206 (59%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
R+ Y I ++G +P P+++++E P IL+ ++K G PTPIQ Q IP L RD+IG
Sbjct: 20 RKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIG 79
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD-QGPYAIIMAPTRELAQQIEEETNKF- 1503
+A TGSGKTL F LP++++ K R+ +GPY +I+ P+ +A+ ++
Sbjct: 80 IAFTGSGKTLVFTLPIIMFCLEQEK--RLPFCKREGPYGLIICPSVNVAKHTHHGIIEYY 137
Query: 1504 -------GTPLGIRTVLVVGGLSREEQGFRLRLGCEIV-IATPGRLIDVLENRYLVLNQC 1555
G P +R L +GG+S +EQ E+V +ATPGRL+D+L + + L+ C
Sbjct: 138 CKLLEDEGAPQ-MRCALCIGGMSVKEQ-------MEVVKLATPGRLMDLLNKKMVSLDIC 189
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEY 1581
Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 190 RYLALDEADRMIDMGFEEDIRTIFSY 215
Score = 298 (110.0 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 72/174 (41%), Positives = 103/174 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K G PTPIQ Q IP L RD+IG+A TGSGKTL F LP++++ K R+
Sbjct: 52 LKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEK--RLPFC 109
Query: 62 D-QGPYAIIMAPTRELAQQIEEETNKF--------GTPLGIRTVLVVGGLSREEQGFRLR 112
+GPY +I+ P+ +A+ ++ G P +R L +GG+S +EQ
Sbjct: 110 KREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQ-MRCALCIGGMSVKEQ----- 163
Query: 113 LGCEIV-IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 165
E+V +ATPGRL+D+L + + L+ C Y+ LDEADRMIDMGFE D++ I Y
Sbjct: 164 --MEVVKLATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSY 215
Score = 213 (80.0 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 48/138 (34%), Positives = 81/138 (58%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQI 284
E++ + + +Y K RQT++F+ATMP ++ A+S L +P T+ +G G + + I+++
Sbjct: 206 EEDIRTIFSYF--KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEV 263
Query: 285 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 344
Y+ E+ K L+E L + PV+IF +K D + + L G A +HGGK QE+
Sbjct: 264 EYV-KEEAKMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEE 321
Query: 345 RELALNSLKGGSKDILMA 362
R A+ + K G KD+L+A
Sbjct: 322 RTKAIEAFKEGKKDVLVA 339
Score = 71 (30.1 bits), Expect = 1.7e-43, Sum P(3) = 1.7e-43
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCPPEL 1165
TGR+GK G+A +F K D + DLK +++ + PP L
Sbjct: 374 TGRSGKTGIATTFINKGCDESVLMDLKALLVEAKQKV-PPVL 414
Score = 61 (26.5 bits), Expect = 1.0e-27, Sum P(3) = 1.0e-27
Identities = 38/156 (24%), Positives = 70/156 (44%)
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
E++ + + +Y K RQT++F+ATMP KI + +KP T + + +
Sbjct: 206 EEDIRTIFSYF--KGQRQTLLFSATMPK-KIQNFAKSALVKPITINVGRAGAASLDVIQE 262
Query: 239 KKYRQTVMFTATMPPAVERLARS------YLRRPATVYIGSVGKPTERIEQI-VYILSEQ 291
+Y V A M +E L ++ + + A V + +E + ++ +Q
Sbjct: 263 VEY---VKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQ 319
Query: 292 DKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
++R K +E G KK V++ DV +KGL+
Sbjct: 320 EERTKAIEAFKEG-KKDVLV------ATDVASKGLD 348
Score = 42 (19.8 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 1749 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
N+ + ++ T +GR G A + + K+++ + Y L+ + + P E
Sbjct: 235 NFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKA 294
Query: 1809 HPDAQHK 1815
DA H+
Sbjct: 295 DVDAIHE 301
Score = 41 (19.5 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 1074 NYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSP 1123
N+ + ++ T +GR G A + + K+++ + Y L+ + + P
Sbjct: 235 NFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPP 284
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 456 (165.6 bits), Expect = 1.4e-69, Sum P(2) = 1.4e-69
Identities = 93/216 (43%), Positives = 136/216 (62%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
M++ D +R IT++G P PV N+ +A P +++++ + + EPT IQ Q P+
Sbjct: 69 MSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPL 128
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
L RD++G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 129 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQV 184
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
++ +G I++ V GG + Q L G EI IATPGRLID LE L +CT
Sbjct: 185 QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCT 244
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
Y+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 245 YLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 275
Score = 456 (165.6 bits), Expect = 1.4e-69, Sum P(2) = 1.4e-69
Identities = 93/216 (43%), Positives = 136/216 (62%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
M++ D +R IT++G P PV N+ +A P +++++ + + EPT IQ Q P+
Sbjct: 69 MSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPL 128
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
L RD++G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 129 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQV 184
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
++ +G I++ V GG + Q L G EI IATPGRLID LE L +CT
Sbjct: 185 QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCT 244
Query: 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
Y+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 245 YLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 275
Score = 389 (142.0 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 81/170 (47%), Positives = 111/170 (65%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPT IQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 115 FKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 170
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ +G I++ V GG + Q L G EI IATPGRLI
Sbjct: 171 CLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLI 230
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 231 DFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 275
Score = 327 (120.2 bits), Expect = 1.4e-69, Sum P(2) = 1.4e-69
Identities = 76/205 (37%), Positives = 114/205 (55%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +L+ + IG++ I QIV + E +K KL+++
Sbjct: 274 RQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQL 333
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV KK D L + + + G+ A +HG K Q +R+ L + G
Sbjct: 334 MEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKA 393
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T +
Sbjct: 394 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQ 453
Query: 1787 FYDLKQMMISSPVSTCPPELLNHPD 1811
DL +++ + P+LL D
Sbjct: 454 ARDLVRVLEEAR-QAINPKLLQLVD 477
Score = 326 (119.8 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 72/188 (38%), Positives = 108/188 (57%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +L+ + IG++ I QIV + E +K KL+++
Sbjct: 274 RQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQL 333
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV KK D L + + + G+ A +HG K Q +R+ L + G
Sbjct: 334 MEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKA 393
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T +
Sbjct: 394 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQ 453
Query: 1112 FYDLKQMM 1119
DL +++
Sbjct: 454 ARDLVRVL 461
Score = 168 (64.2 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 41/125 (32%), Positives = 67/125 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +L+ + IG++ I QIV + E +K KL+++
Sbjct: 274 RQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQL 333
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV KK D L + + + G+ A +HG K Q +R+ L + G
Sbjct: 334 MEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKA 393
Query: 358 DILMA 362
IL+A
Sbjct: 394 PILIA 398
Score = 38 (18.4 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+M++AT P
Sbjct: 274 RQTLMWSATWP 284
Score = 38 (18.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 290 EQDKRKKLMEVLNRGVKKPVIIF 312
E+ +RK+ + V G KPV F
Sbjct: 75 EEYRRKREITVRGSGCPKPVTNF 97
Score = 38 (18.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 984 EQDKRKKLMEVLNRGVKKPVIIF 1006
E+ +RK+ + V G KPV F
Sbjct: 75 EEYRRKREITVRGSGCPKPVTNF 97
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 395 (144.1 bits), Expect = 9.2e-69, Sum P(3) = 9.2e-69
Identities = 93/206 (45%), Positives = 134/206 (65%)
Query: 707 WRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQA 758
WR +E+ +I +K G+ +P+PV +++ P +I+ I K G+ +PTPIQ QA
Sbjct: 27 WR--KENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYP-DIMANIRKTGFQKPTPIQSQA 83
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D GP +++APTRELA
Sbjct: 84 WPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DKRGGPGMLVLAPTRELA 140
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
Q+E E K+ T G +++ + GG R+ Q + G +IVIATPGRL D+ N ++ L
Sbjct: 141 LQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLK 199
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKIL 904
TY+VLDEADRM+DMGFEP + KIL
Sbjct: 200 SITYLVLDEADRMLDMGFEPQIMKIL 225
Score = 395 (144.1 bits), Expect = 5.3e-67, Sum P(2) = 5.3e-67
Identities = 93/206 (45%), Positives = 134/206 (65%)
Query: 1382 WRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQA 1433
WR +E+ +I +K G+ +P+PV +++ P +I+ I K G+ +PTPIQ QA
Sbjct: 27 WR--KENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYP-DIMANIRKTGFQKPTPIQSQA 83
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D GP +++APTRELA
Sbjct: 84 WPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DKRGGPGMLVLAPTRELA 140
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
Q+E E K+ T G +++ + GG R+ Q + G +IVIATPGRL D+ N ++ L
Sbjct: 141 LQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLK 199
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKIL 1579
TY+VLDEADRM+DMGFEP + KIL
Sbjct: 200 SITYLVLDEADRMLDMGFEPQIMKIL 225
Score = 381 (139.2 bits), Expect = 4.2e-69, Sum P(4) = 4.2e-69
Identities = 82/162 (50%), Positives = 111/162 (68%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K G+ +PTPIQ QA PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D
Sbjct: 68 IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DK 124
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++APTRELA Q+E E K+ T G +++ + GG R+ Q + G +IVIAT
Sbjct: 125 RGGPGMLVLAPTRELALQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIAT 183
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N ++ L TY+VLDEADRM+DMGFEP + KIL
Sbjct: 184 PGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKIL 225
Score = 332 (121.9 bits), Expect = 5.3e-67, Sum P(2) = 5.3e-67
Identities = 81/209 (38%), Positives = 119/209 (56%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK-KLMEV 1669
RQTVM +AT P V RLA+SYLR P VY+G++ + + Y+ ++D K M+V
Sbjct: 232 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVV-LKYLQFDKDIFTWKYMQV 290
Query: 1670 LNRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ V++FV AD +A L G +LHG + Q RE AL+ K G I
Sbjct: 291 NAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVATD+A RG+D+ D++ V N+D ++IE+Y HR+GRTGRAG+ G AV+ TK D
Sbjct: 351 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAAS 410
Query: 1789 DLKQMMISSPVSTCPPELLNHPDA--QHK 1815
+L ++ + P EL++ + QH+
Sbjct: 411 ELIDILQRAK-QVVPDELISMAERYKQHQ 438
Score = 330 (121.2 bits), Expect = 4.2e-69, Sum P(4) = 4.2e-69
Identities = 75/175 (42%), Positives = 105/175 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK-KLMEV 994
RQTVM +AT P V RLA+SYLR P VY+G++ + + Y+ ++D K M+V
Sbjct: 232 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVV-LKYLQFDKDIFTWKYMQV 290
Query: 995 LNRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ V++FV AD +A L G +LHG + Q RE AL+ K G I
Sbjct: 291 NAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
LVATD+A RG+D+ D++ V N+D ++IE+Y HR+GRTGRAG+ G AV+ TK D
Sbjct: 351 LVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKD 405
Score = 162 (62.1 bits), Expect = 1.3e-51, Sum P(4) = 1.3e-51
Identities = 46/123 (37%), Positives = 65/123 (52%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK-KLMEV 300
RQTVM +AT P V RLA+SYLR P VY+G++ + + Y+ ++D K M+V
Sbjct: 232 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVV-LKYLQFDKDIFTWKYMQV 290
Query: 301 LNRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ V++FV AD +A L G +LHG + Q RE AL+ K G I
Sbjct: 291 NAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRI 350
Query: 360 LMA 362
L+A
Sbjct: 351 LVA 353
Score = 57 (25.1 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 31/131 (23%), Positives = 61/131 (46%)
Query: 1055 VATDVAGRGIDIKDVSMVINY-DMAKSIEDYTH---RIGRTGRAGKEGLAVSFCTKDDSH 1110
+A+D+ +G+ ++ + D ++++D+ RI GL V D +H
Sbjct: 313 IASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVH----DITH 368
Query: 1111 LF-YD----LKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
+F +D +++ + TGRAG+ G AV+ TK D +L ++ + P EL
Sbjct: 369 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAK-QVVPDEL 427
Query: 1166 LNHPDA--QHK 1174
++ + QH+
Sbjct: 428 ISMAERYKQHQ 438
Score = 45 (20.9 bits), Expect = 4.2e-69, Sum P(4) = 4.2e-69
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEK 1420
T K++ +T++DW+ E I + +V PD + + E +I + +EK
Sbjct: 394 TGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERYKQHQIRKEMEK 445
Score = 45 (20.9 bits), Expect = 1.3e-51, Sum P(4) = 1.3e-51
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 695 TEKSLDEMTERDWRIFREDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEK 745
T K++ +T++DW+ E I + +V PD + + E +I + +EK
Sbjct: 394 TGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERYKQHQIRKEMEK 445
Score = 40 (19.1 bits), Expect = 4.2e-69, Sum P(4) = 4.2e-69
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQTVM +AT P
Sbjct: 232 RQTVMMSATWP 242
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 699 (251.1 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 175/466 (37%), Positives = 262/466 (56%)
Query: 699 LDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTPIQR 756
L +++ + R+D +I +KG VP P+ W +LPT + +I +K+ + +P+ IQ
Sbjct: 263 LSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQS 322
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
QA+P L RD+IG+A+TGSGKTL+++LP+L IQ + +QGP +I++PTRE
Sbjct: 323 QALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSKDNQGPIGLILSPTRE 378
Query: 817 LAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---EN 872
LA QIE+E F +R GG S E Q L+ G EI++ TPGR+ID+L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 932
R L L +CT++VLDEADRM D+GFEP V KIL T ++PD
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD----------------- 476
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKR 988
RQTV+F+AT P +E LA+ L P + +G + I+Q V + EQDK
Sbjct: 477 ---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKY 533
Query: 989 K-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
K KL ++L N ++ P +++F ++ AD L L Y A +HGGK Q R
Sbjct: 534 KQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDR 593
Query: 1040 ELALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
+ A+ S+ G +IL+AT +A RG+D++++ +VIN+D +EDY HR+GRTGRAG
Sbjct: 594 KYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 1097 EGLAVSFCTKDDSHLFYDL-KQMMIS-SPVTGRAGKEGLAVSFCTK 1140
+G A++F + ++L K + +S S + + E +A F TK
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKL--EEIANKFVTK 696
Score = 695 (249.7 bits), Expect = 3.0e-67, P = 3.0e-67
Identities = 172/456 (37%), Positives = 257/456 (56%)
Query: 1374 LDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTPIQR 1431
L +++ + R+D +I +KG VP P+ W +LPT + +I +K+ + +P+ IQ
Sbjct: 263 LSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQS 322
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
QA+P L RD+IG+A+TGSGKTL+++LP+L IQ + +QGP +I++PTRE
Sbjct: 323 QALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSKDNQGPIGLILSPTRE 378
Query: 1492 LAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---EN 1547
LA QIE+E F +R GG S E Q L+ G EI++ TPGR+ID+L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 1607
R L L +CT++VLDEADRM D+GFEP V KIL T ++PD
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD----------------- 476
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKR 1663
RQTV+F+AT P +E LA+ L P + +G + I+Q V + EQDK
Sbjct: 477 ---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKY 533
Query: 1664 K-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
K KL ++L N ++ P +++F ++ AD L L Y A +HGGK Q R
Sbjct: 534 KQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDR 593
Query: 1715 ELALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771
+ A+ S+ G +IL+AT +A RG+D++++ +VIN+D +EDY HR+GRTGRAG
Sbjct: 594 KYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 1772 EGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
+G A++F + ++L K + +S S P+L
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSH--SDIDPKL 686
Score = 369 (135.0 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 83/180 (46%), Positives = 115/180 (63%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I +K+ + +P+ IQ QA+P L RD+IG+A+TGSGKTL+++LP+L IQ +
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSK 363
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVI 119
+QGP +I++PTRELA QIE+E F +R GG S E Q L+ G EI++
Sbjct: 364 DNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIV 423
Query: 120 ATPGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
TPGR+ID+L R L L +CT++VLDEADRM D+GFEP V KIL T ++PD +
Sbjct: 424 GTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPDRQ 478
Score = 154 (59.3 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 49/150 (32%), Positives = 74/150 (49%)
Query: 229 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 288
NK+L RQTV+F+AT P +E LA+ L P + +G + I+Q V +
Sbjct: 467 NKILTQIRPD---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLF 523
Query: 289 S----EQDKRK-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACT 335
EQDK K KL ++L N ++ P +++F ++ AD L L Y A
Sbjct: 524 ETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIA 583
Query: 336 LHGGKGQEQRELALN---SLKGGSKDILMA 362
+HGGK Q R+ A+ S+ G +IL+A
Sbjct: 584 IHGGKDQMDRKYAIKEFASMDSGI-NILIA 612
Score = 50 (22.7 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA------EDE- 181
+EN+ L + I++ R+ID+ + ++L T + D D E +
Sbjct: 408 IENQINELKKGVEIIVGTPGRVIDL-LAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQV 466
Query: 182 NKLLANYNSKKKYRQTVMFTATMP 205
NK+L RQTV+F+AT P
Sbjct: 467 NKILTQIRPD---RQTVLFSATFP 487
Score = 48 (22.0 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A++F + ++L K + +S S P+L
Sbjct: 647 TGRAGAKGNAITFVSSSQPKEVFNLVKALKLSH--SDIDPKL 686
Score = 40 (19.1 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1246 PEEKELNKDKEREGEAIK 1263
P K L+ D+ER G K
Sbjct: 822 PGSKPLSNDQERNGSLAK 839
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 699 (251.1 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 175/466 (37%), Positives = 262/466 (56%)
Query: 699 LDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTPIQR 756
L +++ + R+D +I +KG VP P+ W +LPT + +I +K+ + +P+ IQ
Sbjct: 263 LSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQS 322
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
QA+P L RD+IG+A+TGSGKTL+++LP+L IQ + +QGP +I++PTRE
Sbjct: 323 QALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSKDNQGPIGLILSPTRE 378
Query: 817 LAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---EN 872
LA QIE+E F +R GG S E Q L+ G EI++ TPGR+ID+L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 932
R L L +CT++VLDEADRM D+GFEP V KIL T ++PD
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD----------------- 476
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKR 988
RQTV+F+AT P +E LA+ L P + +G + I+Q V + EQDK
Sbjct: 477 ---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKY 533
Query: 989 K-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
K KL ++L N ++ P +++F ++ AD L L Y A +HGGK Q R
Sbjct: 534 KQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDR 593
Query: 1040 ELALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1096
+ A+ S+ G +IL+AT +A RG+D++++ +VIN+D +EDY HR+GRTGRAG
Sbjct: 594 KYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 1097 EGLAVSFCTKDDSHLFYDL-KQMMIS-SPVTGRAGKEGLAVSFCTK 1140
+G A++F + ++L K + +S S + + E +A F TK
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKL--EEIANKFVTK 696
Score = 695 (249.7 bits), Expect = 3.0e-67, P = 3.0e-67
Identities = 172/456 (37%), Positives = 257/456 (56%)
Query: 1374 LDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTPIQR 1431
L +++ + R+D +I +KG VP P+ W +LPT + +I +K+ + +P+ IQ
Sbjct: 263 LSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQS 322
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
QA+P L RD+IG+A+TGSGKTL+++LP+L IQ + +QGP +I++PTRE
Sbjct: 323 QALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSKDNQGPIGLILSPTRE 378
Query: 1492 LAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---EN 1547
LA QIE+E F +R GG S E Q L+ G EI++ TPGR+ID+L
Sbjct: 379 LALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSG 438
Query: 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSK 1607
R L L +CT++VLDEADRM D+GFEP V KIL T ++PD
Sbjct: 439 RVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPD----------------- 476
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS----EQDKR 1663
RQTV+F+AT P +E LA+ L P + +G + I+Q V + EQDK
Sbjct: 477 ---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKY 533
Query: 1664 K-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
K KL ++L N ++ P +++F ++ AD L L Y A +HGGK Q R
Sbjct: 534 KQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDR 593
Query: 1715 ELALN---SLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGK 1771
+ A+ S+ G +IL+AT +A RG+D++++ +VIN+D +EDY HR+GRTGRAG
Sbjct: 594 KYAIKEFASMDSGI-NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 1772 EGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
+G A++F + ++L K + +S S P+L
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSH--SDIDPKL 686
Score = 369 (135.0 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 83/180 (46%), Positives = 115/180 (63%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I +K+ + +P+ IQ QA+P L RD+IG+A+TGSGKTL+++LP+L IQ +
Sbjct: 308 IHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQD----QQFSK 363
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRLRLGCEIVI 119
+QGP +I++PTRELA QIE+E F +R GG S E Q L+ G EI++
Sbjct: 364 DNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIV 423
Query: 120 ATPGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
TPGR+ID+L R L L +CT++VLDEADRM D+GFEP V KIL T ++PD +
Sbjct: 424 GTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKIL-----TQIRPDRQ 478
Score = 154 (59.3 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 49/150 (32%), Positives = 74/150 (49%)
Query: 229 NKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL 288
NK+L RQTV+F+AT P +E LA+ L P + +G + I+Q V +
Sbjct: 467 NKILTQIRPD---RQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLF 523
Query: 289 S----EQDKRK-----KLMEVL-NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACT 335
EQDK K KL ++L N ++ P +++F ++ AD L L Y A
Sbjct: 524 ETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIA 583
Query: 336 LHGGKGQEQRELALN---SLKGGSKDILMA 362
+HGGK Q R+ A+ S+ G +IL+A
Sbjct: 584 IHGGKDQMDRKYAIKEFASMDSGI-NILIA 612
Score = 50 (22.7 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDA------EDE- 181
+EN+ L + I++ R+ID+ + ++L T + D D E +
Sbjct: 408 IENQINELKKGVEIIVGTPGRVIDL-LAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQV 466
Query: 182 NKLLANYNSKKKYRQTVMFTATMP 205
NK+L RQTV+F+AT P
Sbjct: 467 NKILTQIRPD---RQTVLFSATFP 487
Score = 48 (22.0 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A++F + ++L K + +S S P+L
Sbjct: 647 TGRAGAKGNAITFVSSSQPKEVFNLVKALKLSH--SDIDPKL 686
Score = 40 (19.1 bits), Expect = 1.0e-68, Sum P(2) = 1.0e-68
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1246 PEEKELNKDKEREGEAIK 1263
P K L+ D+ER G K
Sbjct: 822 PGSKPLSNDQERNGSLAK 839
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 399 (145.5 bits), Expect = 7.5e-63, Sum P(2) = 7.5e-63
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 167
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 168 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 227
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 228 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 172 (65.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 358 DILMA 362
IL+A
Sbjct: 391 PILIA 395
Score = 43 (20.2 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 271 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 310
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 399 (145.5 bits), Expect = 7.5e-63, Sum P(2) = 7.5e-63
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 167
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 168 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 227
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 228 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 172 (65.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 358 DILMA 362
IL+A
Sbjct: 391 PILIA 395
Score = 43 (20.2 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 271 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 310
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 446 (162.1 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 399 (145.5 bits), Expect = 7.5e-63, Sum P(2) = 7.5e-63
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 167
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 168 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 227
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 228 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 327 (120.2 bits), Expect = 1.3e-68, Sum P(2) = 1.3e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 444
Score = 172 (65.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 358 DILMA 362
IL+A
Sbjct: 391 PILIA 395
Score = 43 (20.2 bits), Expect = 5.3e-33, Sum P(2) = 5.3e-33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 271 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 310
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 430 (156.4 bits), Expect = 2.6e-68, Sum P(2) = 2.6e-68
Identities = 86/200 (43%), Positives = 125/200 (62%)
Query: 1384 IFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 1443
I+R+ + +T G +P P ++ + LP EIL + G+ PTPIQ Q PI LQ+RDI
Sbjct: 416 IYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDI 475
Query: 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 1503
+ +A+TGSGKTL +L+P + ++ D+ GP +I+APTRELA QI++E +F
Sbjct: 476 VAIAKTGSGKTLGYLIPAFILLRHC-----RNDSRNGPTVLILAPTRELATQIQDEALRF 530
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G I + GG + Q L G +IV+ATPGRL D+LE + + Q + +VLDEA
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
DRM+DMGFEP ++KI+ +P
Sbjct: 591 DRMLDMGFEPQIRKIVNEIP 610
Score = 430 (156.4 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 86/200 (43%), Positives = 125/200 (62%)
Query: 709 IFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 768
I+R+ + +T G +P P ++ + LP EIL + G+ PTPIQ Q PI LQ+RDI
Sbjct: 416 IYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDI 475
Query: 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF 828
+ +A+TGSGKTL +L+P + ++ D+ GP +I+APTRELA QI++E +F
Sbjct: 476 VAIAKTGSGKTLGYLIPAFILLRHC-----RNDSRNGPTVLILAPTRELATQIQDEALRF 530
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G I + GG + Q L G +IV+ATPGRL D+LE + + Q + +VLDEA
Sbjct: 531 GRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEA 590
Query: 889 DRMIDMGFEPDVQKILEYMP 908
DRM+DMGFEP ++KI+ +P
Sbjct: 591 DRMLDMGFEPQIRKIVNEIP 610
Score = 373 (136.4 bits), Expect = 2.6e-60, Sum P(3) = 2.6e-60
Identities = 75/162 (46%), Positives = 105/162 (64%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ PTPIQ Q PI LQ+RDI+ +A+TGSGKTL +L+P + ++ D+ GP
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHC-----RNDSRNGP 508
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+I+APTRELA QI++E +FG I + GG + Q L G +IV+ATPGRL
Sbjct: 509 TVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRL 568
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
D+LE + + Q + +VLDEADRM+DMGFEP ++KI+ +P
Sbjct: 569 NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIP 610
Score = 360 (131.8 bits), Expect = 2.6e-68, Sum P(2) = 2.6e-68
Identities = 89/239 (37%), Positives = 135/239 (56%)
Query: 1577 KILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 1632
K++++ V+ L D D D E ++ N RQT+M+TAT P V ++A L
Sbjct: 575 KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634
Query: 1633 RRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLN---RGVKKPVIIFVNQKKG 1687
P V IG V + + I Q V ++ + +K ++L ++L RG K VIIF + K+
Sbjct: 635 VNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSK--VIIFCSTKRL 692
Query: 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1747
D LA+ + + + A +HG K Q +R+ LN + G +L+ATDVA RG+DIKD+ +V
Sbjct: 693 CDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVV 751
Query: 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
INYD +EDY HRIGRTGRAG G+A +F T+ D DL +++ + PP++
Sbjct: 752 INYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQV-PPQV 809
Score = 358 (131.1 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 87/227 (38%), Positives = 130/227 (57%)
Query: 902 KILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 957
K++++ V+ L D D D E ++ N RQT+M+TAT P V ++A L
Sbjct: 575 KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634
Query: 958 RRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLN---RGVKKPVIIFVNQKKG 1012
P V IG V + + I Q V ++ + +K ++L ++L RG K VIIF + K+
Sbjct: 635 VNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSK--VIIFCSTKRL 692
Query: 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMV 1072
D LA+ + + + A +HG K Q +R+ LN + G +L+ATDVA RG+DIKD+ +V
Sbjct: 693 CDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVV 751
Query: 1073 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
INYD +EDY HRIGRTGRAG G+A +F T+ D DL +++
Sbjct: 752 INYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVL 798
Score = 174 (66.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 52/164 (31%), Positives = 85/164 (51%)
Query: 208 KILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYL 263
K++++ V+ L D D D E ++ N RQT+M+TAT P V ++A L
Sbjct: 575 KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634
Query: 264 RRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLN---RGVKKPVIIFVNQKKG 318
P V IG V + + I Q V ++ + +K ++L ++L RG K VIIF + K+
Sbjct: 635 VNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSK--VIIFCSTKRL 692
Query: 319 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
D LA+ + + + A +HG K Q +R+ LN + G +L+A
Sbjct: 693 CDHLARSVGR-HFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIA 735
Score = 54 (24.1 bits), Expect = 7.8e-35, Sum P(3) = 7.8e-35
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG G+A +F T+ D DL +++ + PP++
Sbjct: 770 TGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQV-PPQV 809
Score = 37 (18.1 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 1628 ARSYLRRPATVY 1639
+RSY R P+ VY
Sbjct: 1011 SRSYSRSPSPVY 1022
Score = 37 (18.1 bits), Expect = 2.4e-34, Sum P(2) = 2.4e-34
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 953 ARSYLRRPATVY 964
+RSY R P+ VY
Sbjct: 1011 SRSYSRSPSPVY 1022
Score = 37 (18.1 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 259 ARSYLRRPATVY 270
+RSY R P+ VY
Sbjct: 1011 SRSYSRSPSPVY 1022
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 392 (143.0 bits), Expect = 2.7e-68, Sum P(2) = 2.7e-68
Identities = 80/202 (39%), Positives = 126/202 (62%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QTV+ +AT+P +VE+LA LR P + G P + QIV + E K+KKL E+LN
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILN 439
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G D+
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDV 499
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ V +V+N+DM S+++Y H+IGR GR G+ G A++F + LF+
Sbjct: 500 VVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFW 559
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
D+ + + S PP+LLN P
Sbjct: 560 DIAKR-VKPTGSLLPPQLLNSP 580
Score = 384 (140.2 bits), Expect = 2.7e-68, Sum P(2) = 2.7e-68
Identities = 84/218 (38%), Positives = 126/218 (57%)
Query: 694 WTEKS-LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 752
+TE + + + E R IT++G VP P+ +++ P + ++ GY PT
Sbjct: 169 YTEHAFVSHLREDQIENLRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPT 228
Query: 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812
PIQ Q IP+GL RD++ A+TGSGKT AFLLP+++ R + P +++
Sbjct: 229 PIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVIL---------RALSQSKSPSGLVLT 279
Query: 813 PTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
PTRELA QIE + + G P +RT L+VGGL Q RLR +++IATPGRL+D++
Sbjct: 280 PTRELAIQIERQAKELMSGLPC-LRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDII 338
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+ R + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 339 KQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLP 376
Score = 384 (140.2 bits), Expect = 2.7e-68, Sum P(2) = 2.7e-68
Identities = 84/218 (38%), Positives = 126/218 (57%)
Query: 1369 WTEKS-LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 1427
+TE + + + E R IT++G VP P+ +++ P + ++ GY PT
Sbjct: 169 YTEHAFVSHLREDQIENLRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPT 228
Query: 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487
PIQ Q IP+GL RD++ A+TGSGKT AFLLP+++ R + P +++
Sbjct: 229 PIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVIL---------RALSQSKSPSGLVLT 279
Query: 1488 PTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
PTRELA QIE + + G P +RT L+VGGL Q RLR +++IATPGRL+D++
Sbjct: 280 PTRELAIQIERQAKELMSGLPC-LRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDII 338
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+ R + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 339 KQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLP 376
Score = 366 (133.9 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 73/182 (40%), Positives = 116/182 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QTV+ +AT+P +VE+LA LR P + G P + QIV + E K+KKL E+LN
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILN 439
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G D+
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDV 499
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ V +V+N+DM S+++Y H+IGR GR G+ G A++F + LF+
Sbjct: 500 VVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFW 559
Query: 1114 DL 1115
D+
Sbjct: 560 DI 561
Score = 342 (125.4 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 73/164 (44%), Positives = 102/164 (62%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY PTPIQ Q IP+GL RD++ A+TGSGKT AFLLP+++ R + P
Sbjct: 223 GYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVIL---------RALSQSKSP 273
Query: 66 YAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
+++ PTRELA QIE + + G P +RT L+VGGL Q RLR +++IATPG
Sbjct: 274 SGLVLTPTRELAIQIERQAKELMSGLPC-LRTALLVGGLPAPPQRHRLRQRIQVIIATPG 332
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
RL+D+++ R + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 333 RLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLP 376
Score = 204 (76.9 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 46/123 (37%), Positives = 75/123 (60%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QTV+ +AT+P +VE+LA LR P + G P + QIV + E K+KKL E+LN
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILN 439
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G D+
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDV 499
Query: 360 LMA 362
+++
Sbjct: 500 VVS 502
Score = 82 (33.9 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G+ G A++F + LF+D+ + + S PP+LLN P
Sbjct: 538 GRLGQHGTAITFINNNSKRLFWDIAKR-VKPTGSLLPPQLLNSP 580
Score = 44 (20.5 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 291 QDKRKKL-MEVLNRGVKKPVIIFVNQKKG-ADVLAKGLEKLGYNACT 335
++ R++L + V RGV +P++ F + G + L + L+ GY T
Sbjct: 184 ENLRRQLGITVRGRGVPRPIVDF--EHCGFPEALNRNLKASGYEVPT 228
Score = 44 (20.5 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 985 QDKRKKL-MEVLNRGVKKPVIIFVNQKKG-ADVLAKGLEKLGYNACT 1029
++ R++L + V RGV +P++ F + G + L + L+ GY T
Sbjct: 184 ENLRRQLGITVRGRGVPRPIVDF--EHCGFPEALNRNLKASGYEVPT 228
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 436 (158.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 408 (148.7 bits), Expect = 3.6e-68, Sum P(4) = 3.6e-68
Identities = 89/216 (41%), Positives = 132/216 (61%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
+TE R++ I + G + +PV ++ +L+ I K PTPIQ+QAIPI
Sbjct: 279 LTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPI 338
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
L RD+I +A+TGSGKT F+ P + I P + E D GP A+ +APTRELA QI
Sbjct: 339 ALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYL---EKGD-GPIALFLAPTRELAHQI 394
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
ET K+ ++T ++ GG+S+++Q L+ GCEI++ATPGRLID+++ + LN+ +
Sbjct: 395 YLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVS 454
Query: 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
Y+VLDEAD+M D GF P V I V +++PD +
Sbjct: 455 YLVLDEADKMFDFGFGPQVLSI-----VNHVRPDRQ 485
Score = 408 (148.7 bits), Expect = 4.3e-68, Sum P(3) = 4.3e-68
Identities = 89/216 (41%), Positives = 132/216 (61%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
+TE R++ I + G + +PV ++ +L+ I K PTPIQ+QAIPI
Sbjct: 279 LTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPI 338
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
L RD+I +A+TGSGKT F+ P + I P + E D GP A+ +APTRELA QI
Sbjct: 339 ALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYL---EKGD-GPIALFLAPTRELAHQI 394
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
ET K+ ++T ++ GG+S+++Q L+ GCEI++ATPGRLID+++ + LN+ +
Sbjct: 395 YLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVS 454
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
Y+VLDEAD+M D GF P V I V +++PD +
Sbjct: 455 YLVLDEADKMFDFGFGPQVLSI-----VNHVRPDRQ 485
Score = 390 (142.3 bits), Expect = 3.6e-68, Sum P(4) = 3.6e-68
Identities = 91/228 (39%), Positives = 132/228 (57%)
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL- 1657
++L+ N + RQT++F+AT P VE AR+ L P + IG +G I QIV +L
Sbjct: 472 QVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLK 531
Query: 1658 SEQDK----RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713
S+ DK +L +L++G V+IFV+ K + L+ L K G+ CTLHG K Q +
Sbjct: 532 SDSDKWNWLTNQLALLLSQG---SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIE 588
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
R + + K G +IL+ATDVA RG+DI + V+NYD ++ IE +THRIGRTGRAG G
Sbjct: 589 RSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTG 648
Query: 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL----NHPDAQHKPG 1817
+A + T D H DL + + S+ PPEL+ N+P + + G
Sbjct: 649 VAYTLITPKDIHFSVDLIKNLESAS-QFVPPELIDVAMNNPHFKRERG 695
Score = 384 (140.2 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 81/175 (46%), Positives = 114/175 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K PTPIQ+QAIPI L RD+I +A+TGSGKT F+ P + I P + E
Sbjct: 320 IAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYL---EKG 376
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+ +APTRELA QI ET K+ ++T ++ GG+S+++Q L+ GCEI++AT
Sbjct: 377 D-GPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVAT 435
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRLID+++ + LN+ +Y+VLDEAD+M D GF P V I V +++PD +
Sbjct: 436 PGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSI-----VNHVRPDRQ 485
Score = 376 (137.4 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 83/197 (42%), Positives = 117/197 (59%)
Query: 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL- 982
++L+ N + RQT++F+AT P VE AR+ L P + IG +G I QIV +L
Sbjct: 472 QVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLK 531
Query: 983 SEQDK----RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
S+ DK +L +L++G V+IFV+ K + L+ L K G+ CTLHG K Q +
Sbjct: 532 SDSDKWNWLTNQLALLLSQG---SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIE 588
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
R + + K G +IL+ATDVA RG+DI + V+NYD ++ IE +THRIGRTGRAG G
Sbjct: 589 RSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTG 648
Query: 1099 LAVSFCTKDDSHLFYDL 1115
+A + T D H DL
Sbjct: 649 VAYTLITPKDIHFSVDL 665
Score = 207 (77.9 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 51/138 (36%), Positives = 77/138 (55%)
Query: 230 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL- 288
++L+ N + RQT++F+AT P VE AR+ L P + IG +G I QIV +L
Sbjct: 472 QVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLK 531
Query: 289 SEQDK----RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 344
S+ DK +L +L++G V+IFV+ K + L+ L K G+ CTLHG K Q +
Sbjct: 532 SDSDKWNWLTNQLALLLSQG---SVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIE 588
Query: 345 RELALNSLKGGSKDILMA 362
R + + K G +IL+A
Sbjct: 589 RSQTIQTFKEGKINILIA 606
Score = 71 (30.1 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL----NHPDAQHKPG 1176
TGRAG G+A + T D H DL + + S+ PPEL+ N+P + + G
Sbjct: 641 TGRAGNTGVAYTLITPKDIHFSVDLIKNLESAS-QFVPPELIDVAMNNPHFKRERG 695
Score = 48 (22.0 bits), Expect = 3.6e-68, Sum P(4) = 3.6e-68
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 1106 KDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYD 1148
+DD +FY L+Q +++ + + + V + + DD ++D
Sbjct: 193 EDDEEIFYKLRQKQLANKSSKQQQDDD--VDYSSLDDDDGYFD 233
Score = 44 (20.5 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 183 KLLANYNSKKKYRQTVMFTATMPP 206
++L+ N + RQT++F+AT P
Sbjct: 472 QVLSIVNHVRPDRQTLLFSATFKP 495
Score = 42 (19.8 bits), Expect = 1.5e-67, Sum P(4) = 1.5e-67
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1140 KDDSHLFYDLKQMMISSPVS 1159
+DD +FY L+Q +++ S
Sbjct: 193 EDDEEIFYKLRQKQLANKSS 212
Score = 40 (19.1 bits), Expect = 3.6e-68, Sum P(4) = 3.6e-68
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1289 DASEDTSVDYNSIYKERH 1306
D S++ +++N I+ E H
Sbjct: 256 DHSKEEYIEFNKIFYEEH 273
Score = 40 (19.1 bits), Expect = 4.3e-68, Sum P(3) = 4.3e-68
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 614 DASEDTSVDYNSIYKERH 631
D S++ +++N I+ E H
Sbjct: 256 DHSKEEYIEFNKIFYEEH 273
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 388 (141.6 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 90/212 (42%), Positives = 121/212 (57%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 351 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 410
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 411 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 469
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 470 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 529
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N QH G
Sbjct: 530 ITKDLLDLLVEAKQEV-PSWLENMAYEQHHKG 560
Score = 387 (141.3 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 142 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 201
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 202 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 261
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 262 EEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 321
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 322 LVLDEADRMLDMGFEPQIRRIVE 344
Score = 387 (141.3 bits), Expect = 5.6e-68, Sum P(2) = 5.6e-68
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 142 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 201
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 202 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 261
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 262 EEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 321
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 322 LVLDEADRMLDMGFEPQIRRIVE 344
Score = 380 (138.8 bits), Expect = 4.0e-67, Sum P(2) = 4.0e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 351 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 410
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 411 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 469
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 470 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 529
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 530 ITKDLLDLLVEA 541
Score = 368 (134.6 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 173 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAM 232
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 233 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLE 292
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 293 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 344
Score = 216 (81.1 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 351 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 410
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 411 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 469
Query: 357 KDILMA 362
IL+A
Sbjct: 470 SPILVA 475
Score = 62 (26.9 bits), Expect = 2.1e-49, Sum P(3) = 2.1e-49
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N QH G
Sbjct: 510 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEQHHKG 560
Score = 41 (19.5 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 351 KGVRHTMMFSATFP 364
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 434 (157.8 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 434 (157.8 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 5.9e-68, Sum P(2) = 5.9e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 434 (157.8 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 434 (157.8 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 6.3e-68, Sum P(2) = 6.3e-68
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 436 (158.5 bits), Expect = 7.3e-68, Sum P(2) = 7.3e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 436 (158.5 bits), Expect = 7.3e-68, Sum P(2) = 7.3e-68
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 371 (135.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 108/318 (33%), Positives = 168/318 (52%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSE--QDKRKKL 297
+ +T++F T E L R +RR +G G ++ ++ ++L+E K L
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQ--QERGWVLNEFKHGKAPIL 395
Query: 298 M--EVLNRGVKKPVIIFV 313
+ +V +RG+ + FV
Sbjct: 396 IATDVASRGLDVEDVKFV 413
Score = 324 (119.1 bits), Expect = 7.3e-68, Sum P(2) = 7.3e-68
Identities = 74/184 (40%), Positives = 106/184 (57%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 324 (119.1 bits), Expect = 7.3e-68, Sum P(2) = 7.3e-68
Identities = 74/184 (40%), Positives = 106/184 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 164 (62.8 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 42/125 (33%), Positives = 67/125 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 388 (141.6 bits), Expect = 8.1e-68, Sum P(2) = 8.1e-68
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 388 (141.6 bits), Expect = 8.1e-68, Sum P(2) = 8.1e-68
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 387 (141.3 bits), Expect = 8.1e-68, Sum P(2) = 8.1e-68
Identities = 91/221 (41%), Positives = 124/221 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +++
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNAN 551
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMVPKKRR 1826
+ DL +++ + P L N H G+ K R
Sbjct: 552 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGSSRGRSKSR 591
Score = 383 (139.9 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
Identities = 84/192 (43%), Positives = 116/192 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +++
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNAN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ITKDLLDLLVEA 563
Score = 369 (135.0 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 254
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 255 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 216 (81.1 bits), Expect = 4.1e-49, Sum P(3) = 4.1e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 60 (26.2 bits), Expect = 4.1e-49, Sum P(3) = 4.1e-49
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + ++++ DL +++ + P L N H G+
Sbjct: 532 TGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 583
Score = 41 (19.5 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 446 (162.1 bits), Expect = 9.5e-68, Sum P(2) = 9.5e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 268
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 328
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 329 RMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 446 (162.1 bits), Expect = 9.5e-68, Sum P(2) = 9.5e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 268
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 328
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 329 RMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 399 (145.5 bits), Expect = 2.2e-62, Sum P(2) = 2.2e-62
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 246
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 247 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 306
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 307 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 327 (120.2 bits), Expect = 9.5e-68, Sum P(2) = 9.5e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 470 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 523
Score = 327 (120.2 bits), Expect = 9.5e-68, Sum P(2) = 9.5e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 470 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 523
Score = 172 (65.6 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 358 DILMA 362
IL+A
Sbjct: 470 PILIA 474
Score = 43 (20.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 350 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 389
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 446 (162.1 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 268
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 328
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 329 RMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 446 (162.1 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 268
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 269 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 328
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 329 RMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 399 (145.5 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 246
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 247 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 306
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 307 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 351
Score = 327 (120.2 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 470 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 523
Score = 327 (120.2 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 470 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 523
Score = 172 (65.6 bits), Expect = 4.6e-46, Sum P(2) = 4.6e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 409
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 410 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 469
Query: 358 DILMA 362
IL+A
Sbjct: 470 PILIA 474
Score = 43 (20.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 350 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 389
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 423 (154.0 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 91/224 (40%), Positives = 139/224 (62%)
Query: 694 WTEKSLDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 752
++E +L T+ + E+ + + G VP + ++ EA ++E + + GY++PT
Sbjct: 104 YSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPT 163
Query: 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMEDADQG-----P 806
P+Q+ +IP L NRD++ A+TGSGKT AFLLP++ I + P + + G P
Sbjct: 164 PVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYP 223
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR-EEQGFRLRLGCEIVIATPGR 865
A++++PTRELA QI +E KF I+T ++ GG +Q RLR G I+IATPGR
Sbjct: 224 CALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGR 283
Query: 866 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMP 908
LID++E ++ L C Y+VLDEADRM+DMGFEP ++KI+ + MP
Sbjct: 284 LIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 327
Score = 423 (154.0 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 91/224 (40%), Positives = 139/224 (62%)
Query: 1369 WTEKSLDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 1427
++E +L T+ + E+ + + G VP + ++ EA ++E + + GY++PT
Sbjct: 104 YSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPT 163
Query: 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMEDADQG-----P 1481
P+Q+ +IP L NRD++ A+TGSGKT AFLLP++ I + P + + G P
Sbjct: 164 PVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYP 223
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR-EEQGFRLRLGCEIVIATPGR 1540
A++++PTRELA QI +E KF I+T ++ GG +Q RLR G I+IATPGR
Sbjct: 224 CALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGR 283
Query: 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMP 1583
LID++E ++ L C Y+VLDEADRM+DMGFEP ++KI+ + MP
Sbjct: 284 LIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 327
Score = 383 (139.9 bits), Expect = 4.9e-63, Sum P(2) = 4.9e-63
Identities = 81/174 (46%), Positives = 116/174 (66%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMED 60
+ + GY++PTP+Q+ +IP L NRD++ A+TGSGKT AFLLP++ I + P + +
Sbjct: 154 VNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPA 213
Query: 61 ADQG-----PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR-EEQGFRLRLG 114
G P A++++PTRELA QI +E KF I+T ++ GG +Q RLR G
Sbjct: 214 FTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAG 273
Query: 115 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMP 167
I+IATPGRLID++E ++ L C Y+VLDEADRM+DMGFEP ++KI+ + MP
Sbjct: 274 THILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 327
Score = 347 (127.2 bits), Expect = 1.0e-67, Sum P(2) = 1.0e-67
Identities = 83/221 (37%), Positives = 124/221 (56%)
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYIL 1657
K++ K R T MF+AT P ++ LA+ +L+ + +G VG +E IEQ + +
Sbjct: 320 KIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV 379
Query: 1658 SEQDKRKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716
+E +KR LME+L N + V++FV K+GA+ LA L + + ++HG Q +RE
Sbjct: 380 NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 439
Query: 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776
L + G ILVAT VA RG+DI +V VINYD+ ++Y HRIGRTGR G G+A
Sbjct: 440 NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 499
Query: 1777 SFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
SF + + DLK +++ S PE L+ A+ + G
Sbjct: 500 SFFNDKNRGIGRDLKNLIVESNQEV--PEWLHQVAAEGRIG 538
Score = 342 (125.4 bits), Expect = 3.4e-67, Sum P(2) = 3.4e-67
Identities = 78/201 (38%), Positives = 116/201 (57%)
Query: 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYIL 982
K++ K R T MF+AT P ++ LA+ +L+ + +G VG +E IEQ + +
Sbjct: 320 KIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV 379
Query: 983 SEQDKRKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041
+E +KR LME+L N + V++FV K+GA+ LA L + + ++HG Q +RE
Sbjct: 380 NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 439
Query: 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1101
L + G ILVAT VA RG+DI +V VINYD+ ++Y HRIGRTGR G G+A
Sbjct: 440 NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 499
Query: 1102 SFCTKDDSHLFYDLKQMMISS 1122
SF + + DLK +++ S
Sbjct: 500 SFFNDKNRGIGRDLKNLIVES 520
Score = 184 (69.8 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 46/135 (34%), Positives = 74/135 (54%)
Query: 230 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTERIEQIVYIL 288
K++ K R T MF+AT P ++ LA+ +L+ + +G VG +E IEQ + +
Sbjct: 320 KIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV 379
Query: 289 SEQDKRKKLMEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 347
+E +KR LME+L N + V++FV K+GA+ LA L + + ++HG Q +RE
Sbjct: 380 NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 439
Query: 348 ALNSLKGGSKDILMA 362
L + G IL+A
Sbjct: 440 NLELFRSGQCPILVA 454
Score = 62 (26.9 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G G+A SF + + DLK +++ S PE L+ A+ + G
Sbjct: 489 TGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEV--PEWLHQVAAEGRIG 538
Score = 40 (19.1 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 183 KLLANYNSKKKYRQTVMFTATMP 205
K++ K R T MF+AT P
Sbjct: 320 KIVGQGMPPKTARTTAMFSATFP 342
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 446 (162.1 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 270
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 271 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 330
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 331 RMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 446 (162.1 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 270
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 271 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 330
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 331 RMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 399 (145.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 248
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 249 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 308
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 309 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 327 (120.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 472 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 525
Score = 327 (120.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 472 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 525
Score = 172 (65.6 bits), Expect = 4.8e-46, Sum P(2) = 4.8e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 358 DILMA 362
IL+A
Sbjct: 472 PILIA 476
Score = 43 (20.2 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 352 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 391
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 446 (162.1 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 270
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 271 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 330
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 331 RMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 446 (162.1 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 270
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 271 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 330
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 331 RMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 399 (145.5 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 248
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 249 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 308
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 309 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 353
Score = 327 (120.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 472 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 525
Score = 327 (120.2 bits), Expect = 1.1e-67, Sum P(2) = 1.1e-67
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 472 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 525
Score = 172 (65.6 bits), Expect = 4.8e-46, Sum P(2) = 4.8e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 411
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 412 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 471
Query: 358 DILMA 362
IL+A
Sbjct: 472 PILIA 476
Score = 43 (20.2 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 352 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 391
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 388 (141.6 bits), Expect = 1.4e-67, Sum P(2) = 1.4e-67
Identities = 90/212 (42%), Positives = 121/212 (57%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 350 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 409
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 410 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 468
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 469 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 528
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N QH G
Sbjct: 529 ITKDLLDLLVEAKQEV-PSWLENMAYEQHHKG 559
Score = 383 (139.9 bits), Expect = 1.4e-67, Sum P(2) = 1.4e-67
Identities = 82/204 (40%), Positives = 120/204 (58%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 140 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 199
Query: 772 AETGSGKTLAFLLPLL--VWIQSLPKIARMEDADQG--------PYAIIMAPTRELAQQI 821
A+TGSGKT AFLLP+L ++ R A G P ++++APTRELA QI
Sbjct: 200 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQI 259
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C
Sbjct: 260 YEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCK 319
Query: 882 YIVLDEADRMIDMGFEPDVQKILE 905
Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 320 YLVLDEADRMLDMGFEPQIRRIVE 343
Score = 383 (139.9 bits), Expect = 1.4e-67, Sum P(2) = 1.4e-67
Identities = 82/204 (40%), Positives = 120/204 (58%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 140 DDIPVEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 199
Query: 1447 AETGSGKTLAFLLPLL--VWIQSLPKIARMEDADQG--------PYAIIMAPTRELAQQI 1496
A+TGSGKT AFLLP+L ++ R A G P ++++APTRELA QI
Sbjct: 200 AQTGSGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQI 259
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C
Sbjct: 260 YEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCK 319
Query: 1557 YIVLDEADRMIDMGFEPDVQKILE 1580
Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 320 YLVLDEADRMLDMGFEPQIRRIVE 343
Score = 380 (138.8 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 350 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 409
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 410 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 468
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 469 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 528
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 529 ITKDLLDLLVEA 540
Score = 364 (133.2 bits), Expect = 4.2e-65, Sum P(3) = 4.2e-65
Identities = 78/173 (45%), Positives = 108/173 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKIARME 59
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L ++ R
Sbjct: 171 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAM 230
Query: 60 DADQG--------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 111
A G P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 231 KATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDL 290
Query: 112 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 291 ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 343
Score = 216 (81.1 bits), Expect = 6.0e-49, Sum P(3) = 6.0e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 350 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 409
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 410 DLLNATGKDSLTLVFVETKKGADALEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 468
Query: 357 KDILMA 362
IL+A
Sbjct: 469 SPILVA 474
Score = 62 (26.9 bits), Expect = 6.0e-49, Sum P(3) = 6.0e-49
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N QH G
Sbjct: 509 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEQHHKG 559
Score = 41 (19.5 bits), Expect = 4.2e-65, Sum P(3) = 4.2e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 350 KGVRHTMMFSATFP 363
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 446 (162.1 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTE 917
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 446 (162.1 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 91/208 (43%), Positives = 134/208 (64%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
G+A+TGSGKTLA+LLP +V I P + R + GP +++APTRELAQQ+++ + +G
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPICLVLAPTRELAQQVQQVADDYG 189
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+++ + GG + Q L G EI IATPGRLID LE+ L +CTY+VLDEAD
Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
RM+DMGFEP ++KI++ ++PD +
Sbjct: 250 RMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 399 (145.5 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 80/170 (47%), Positives = 114/170 (67%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 167
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
+++APTRELAQQ+++ + +G +++ + GG + Q L G EI IATPGRLI
Sbjct: 168 CLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLI 227
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
D LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 228 DFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 272
Score = 316 (116.3 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 70/176 (39%), Positives = 103/176 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1052 DILVATDVAGRGI--DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+ D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 446
Score = 316 (116.3 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 70/176 (39%), Positives = 103/176 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 1727 DILVATDVAGRGI--DIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+ D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 391 PILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 446
Score = 172 (65.6 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 330
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 331 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 358 DILMA 362
IL+A
Sbjct: 391 PILIA 395
Score = 43 (20.2 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 271 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 310
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 388 (141.6 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 772 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 388 (141.6 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 1447 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 383 (139.9 bits), Expect = 2.1e-67, Sum P(2) = 2.1e-67
Identities = 89/213 (41%), Positives = 121/213 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 431
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 550
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ DL +++ + P L N H G+
Sbjct: 551 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 582
Score = 380 (138.8 bits), Expect = 4.4e-67, Sum P(2) = 4.4e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 431
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 550
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 551 ITKDLLDLLVEA 562
Score = 369 (135.0 bits), Expect = 8.9e-65, Sum P(3) = 8.9e-65
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 194 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 253
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 254 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 313
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 314 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 216 (81.1 bits), Expect = 8.4e-49, Sum P(3) = 8.4e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 431
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 357 KDILMA 362
IL+A
Sbjct: 491 SPILVA 496
Score = 57 (25.1 bits), Expect = 8.4e-49, Sum P(3) = 8.4e-49
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 531 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 582
Score = 41 (19.5 bits), Expect = 8.9e-65, Sum P(3) = 8.9e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 372 KGVRHTMMFSATFP 385
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 388 (141.6 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 388 (141.6 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 383 (139.9 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 89/213 (41%), Positives = 121/213 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ DL +++ + P L N H G+
Sbjct: 552 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 583
Score = 380 (138.8 bits), Expect = 4.5e-67, Sum P(2) = 4.5e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ITKDLLDLLVEA 563
Score = 369 (135.0 bits), Expect = 9.1e-65, Sum P(3) = 9.1e-65
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 254
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 255 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 216 (81.1 bits), Expect = 8.6e-49, Sum P(3) = 8.6e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 57 (25.1 bits), Expect = 8.6e-49, Sum P(3) = 8.6e-49
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 532 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 583
Score = 41 (19.5 bits), Expect = 9.1e-65, Sum P(3) = 9.1e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 388 (141.6 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 388 (141.6 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 383 (139.9 bits), Expect = 2.2e-67, Sum P(2) = 2.2e-67
Identities = 89/213 (41%), Positives = 121/213 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ DL +++ + P L N H G+
Sbjct: 552 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 583
Score = 380 (138.8 bits), Expect = 4.5e-67, Sum P(2) = 4.5e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ITKDLLDLLVEA 563
Score = 369 (135.0 bits), Expect = 9.1e-65, Sum P(3) = 9.1e-65
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 254
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 255 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 216 (81.1 bits), Expect = 8.6e-49, Sum P(3) = 8.6e-49
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 57 (25.1 bits), Expect = 8.6e-49, Sum P(3) = 8.6e-49
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 532 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 583
Score = 41 (19.5 bits), Expect = 9.1e-65, Sum P(3) = 9.1e-65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 393 (143.4 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 83/203 (40%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 393 (143.4 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 83/203 (40%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 282
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 377 (137.8 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 84/192 (43%), Positives = 117/192 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 431
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 490
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
K ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 KPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLN 550
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 551 ITKDLLDLLVEA 562
Score = 377 (137.8 bits), Expect = 2.3e-67, Sum P(2) = 2.3e-67
Identities = 84/192 (43%), Positives = 117/192 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 431
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 490
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
K ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 KPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLN 550
Query: 1786 LFYDLKQMMISS 1797
+ DL +++ +
Sbjct: 551 ITKDLLDLLVEA 562
Score = 370 (135.3 bits), Expect = 3.4e-64, Sum P(3) = 3.4e-64
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 194 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAM 253
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 254 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLE 313
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 314 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 213 (80.0 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 431
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 432 DLLNATGKDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 490
Query: 357 KDILMA 362
K IL+A
Sbjct: 491 KPILVA 496
Score = 54 (24.1 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGR G GLA SF + + ++ DL +++ +
Sbjct: 531 TGRVGNLGLATSFFNERNLNITKDLLDLLVEA 562
Score = 41 (19.5 bits), Expect = 3.4e-64, Sum P(3) = 3.4e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 372 KGVRHTMMFSATFP 385
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 429 (156.1 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 89/219 (40%), Positives = 134/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G E IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLR 240
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 429 (156.1 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 89/219 (40%), Positives = 134/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 65 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 124
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 125 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 180
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G E IATPGRLID LE L
Sbjct: 181 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLR 240
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 241 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 274
Score = 364 (133.2 bits), Expect = 7.5e-30, P = 7.5e-30
Identities = 106/316 (33%), Positives = 163/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 166
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G E IA
Sbjct: 167 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIA 223
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 224 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 340
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 341 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 398 TDVASRGLDVEDVKFV 413
Score = 328 (120.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1112 FYDL 1115
DL
Sbjct: 453 VSDL 456
Score = 328 (120.5 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452
Query: 1787 FYDL 1790
DL
Sbjct: 453 VSDL 456
Score = 168 (64.2 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392
Query: 358 DILMA 362
IL+A
Sbjct: 393 PILIA 397
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 436 (158.5 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 122 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 181
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 182 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 237
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 238 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 297
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 298 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 331
Score = 436 (158.5 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 90/219 (41%), Positives = 135/219 (61%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q
Sbjct: 122 LARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQG 181
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
P+ L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELA
Sbjct: 182 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELA 237
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QQ+++ ++ +++ + GG + Q L G EI IATPGRLID LE L
Sbjct: 238 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 297
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
+ TY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 298 RTTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 331
Score = 371 (135.7 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 107/316 (33%), Positives = 164/316 (51%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 165 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 223
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 224 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 280
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAE 179
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + P +
Sbjct: 281 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 340
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E + LA K + IL+ + V + D E E +L+ S+K
Sbjct: 341 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCH---DVEKDEKLIRLMEEIMSEK 397
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM- 298
+ +T++F T E L R +RR +G G +++ V + K L+
Sbjct: 398 E-NKTIVFVETKRRCDE-LTRK-MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 454
Query: 299 -EVLNRGVKKPVIIFV 313
+V +RG+ + FV
Sbjct: 455 TDVASRGLDVEDVKFV 470
Score = 328 (120.5 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 991
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 330 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 389
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 390 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 449
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 450 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 509
Query: 1112 FYDL 1115
DL
Sbjct: 510 VSDL 513
Score = 328 (120.5 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 74/184 (40%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 1666
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 330 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 389
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 390 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 449
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ K G A +F T ++
Sbjct: 450 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 509
Query: 1787 FYDL 1790
DL
Sbjct: 510 VSDL 513
Score = 168 (64.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKL--- 297
RQT+M++AT P V +LA +L+ + IG++ I QIV + + +K +KL
Sbjct: 330 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 389
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
ME + + I+FV K+ D L + + + G+ A +HG K Q++R+ LN K G
Sbjct: 390 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 449
Query: 358 DILMA 362
IL+A
Sbjct: 450 PILIA 454
Score = 43 (20.2 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 252 PPAVERLAR-SYLRRPATVYIGSV-GKPTER 280
PPA R R S LR P T I ++ G ++R
Sbjct: 35 PPAATRRTRFSLLRSPPTATIDAMSGYSSDR 65
Score = 43 (20.2 bits), Expect = 4.4e-67, Sum P(3) = 4.4e-67
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 946 PPAVERLAR-SYLRRPATVYIGSV-GKPTER 974
PPA R R S LR P T I ++ G ++R
Sbjct: 35 PPAATRRTRFSLLRSPPTATIDAMSGYSSDR 65
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 81/203 (39%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 162 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 221
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + + Q P ++++APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 281
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVE 364
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 81/203 (39%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 162 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 221
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + + Q P ++++APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 281
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVE 364
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 89/212 (41%), Positives = 121/212 (57%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 430
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 490 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 549
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N H G
Sbjct: 550 ITKDLLDLLVEAKQEV-PSWLENMAFEHHYKG 580
Score = 382 (139.5 bits), Expect = 7.6e-67, Sum P(2) = 7.6e-67
Identities = 84/192 (43%), Positives = 116/192 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 430
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 490 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 549
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 550 ITKDLLDLLVEA 561
Score = 365 (133.5 bits), Expect = 1.7e-64, Sum P(3) = 1.7e-64
Identities = 77/172 (44%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 193 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAM 252
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ + Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 253 KENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 312
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 313 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 218 (81.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 52/126 (41%), Positives = 72/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 430
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 357 KDILMA 362
IL+A
Sbjct: 490 SPILVA 495
Score = 56 (24.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N H G
Sbjct: 530 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAFEHHYKG 580
Score = 41 (19.5 bits), Expect = 1.7e-64, Sum P(3) = 1.7e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 371 KGVRHTMMFSATFP 384
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 81/203 (39%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + + Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 282
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 81/203 (39%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 163 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 222
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + + Q P ++++APTRELA QI
Sbjct: 223 AQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIY 282
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 283 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 342
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 343 LVLDEADRMLDMGFEPQIRRIVE 365
Score = 384 (140.2 bits), Expect = 4.7e-67, Sum P(2) = 4.7e-67
Identities = 89/212 (41%), Positives = 121/212 (57%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 431
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 550
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N H G
Sbjct: 551 ITKDLLDLLVEAKQEV-PSWLENMAFEHHYKG 581
Score = 382 (139.5 bits), Expect = 7.7e-67, Sum P(2) = 7.7e-67
Identities = 84/192 (43%), Positives = 116/192 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 431
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 491 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 550
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 551 ITKDLLDLLVEA 562
Score = 365 (133.5 bits), Expect = 1.8e-64, Sum P(3) = 1.8e-64
Identities = 77/172 (44%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 194 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAM 253
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ + Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 254 KENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 313
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 314 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 218 (81.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 52/126 (41%), Positives = 72/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 372 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 431
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G +++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 432 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 490
Query: 357 KDILMA 362
IL+A
Sbjct: 491 SPILVA 496
Score = 56 (24.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N H G
Sbjct: 531 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAFEHHYKG 581
Score = 41 (19.5 bits), Expect = 1.8e-64, Sum P(3) = 1.8e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 372 KGVRHTMMFSATFP 385
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 384 (140.2 bits), Expect = 4.9e-67, Sum P(2) = 4.9e-67
Identities = 73/202 (36%), Positives = 125/202 (61%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++E+L L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G N+ ++H K Q +R L L G ++
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ +V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
D+ + + S PP+LLN P
Sbjct: 559 DVAKR-VKPTGSILPPQLLNSP 579
Score = 381 (139.2 bits), Expect = 4.9e-67, Sum P(2) = 4.9e-67
Identities = 82/200 (41%), Positives = 125/200 (62%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
++ I+++G V P+ +++ P + + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 828
A+TGSGKT AFLLP+++ R D+ P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVII---------RAFSEDKTPSALILTPTRELAIQIERQAKELMS 296
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L+ +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEA 355
Query: 889 DRMIDMGFEPDVQKILEYMP 908
D M+ MGF+ V +LE+ P
Sbjct: 356 DTMLKMGFQQQVLDVLEHTP 375
Score = 381 (139.2 bits), Expect = 4.9e-67, Sum P(2) = 4.9e-67
Identities = 82/200 (41%), Positives = 125/200 (62%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
++ I+++G V P+ +++ P + + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 1503
A+TGSGKT AFLLP+++ R D+ P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVII---------RAFSEDKTPSALILTPTRELAIQIERQAKELMS 296
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L+ +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEA 355
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
D M+ MGF+ V +LE+ P
Sbjct: 356 DTMLKMGFQQQVLDVLEHTP 375
Score = 358 (131.1 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 66/182 (36%), Positives = 115/182 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++E+L L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G N+ ++H K Q +R L L G ++
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ +V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1114 DL 1115
D+
Sbjct: 559 DV 560
Score = 352 (129.0 bits), Expect = 5.6e-64, Sum P(2) = 5.6e-64
Identities = 77/168 (45%), Positives = 109/168 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY PTPIQ Q IP+GL RDI+ A+TGSGKT AFLLP+++ R
Sbjct: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVII---------RAFSE 268
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
D+ P A+I+ PTRELA QIE + + G P ++TVL+VGGL Q +RLR +++I
Sbjct: 269 DKTPSALILTPTRELAIQIERQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLRQHVKVII 327
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ATPGRL+D+++ + L+ +V+DEAD M+ MGF+ V +LE+ P
Sbjct: 328 ATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTP 375
Score = 196 (74.1 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 40/123 (32%), Positives = 73/123 (59%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++E+L L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G N+ ++H K Q +R L L G ++
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498
Query: 360 LMA 362
+++
Sbjct: 499 VVS 501
Score = 81 (33.6 bits), Expect = 1.4e-47, Sum P(3) = 1.4e-47
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G+ G A++F + LF+D+ + + S PP+LLN P
Sbjct: 537 GRLGQNGTAITFINNNSKRLFWDVAKR-VKPTGSILPPQLLNSP 579
Score = 38 (18.4 bits), Expect = 3.8e-31, Sum P(3) = 3.8e-31
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 726 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETG 775
PV + + L ++L E ++KI G ++E + ++R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTG 503
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 1401 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
PV + + L ++L E ++KI G ++E + ++R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTG 503
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 390 (142.3 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 85/214 (39%), Positives = 142/214 (66%)
Query: 1373 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEASLP-TEILEIIEKIGYAE 1425
S+ ++ WR +E++++ +K G+ +P+P+ +++A P E+++ I+K G+ +
Sbjct: 180 SMSQVQVDIWR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQK 237
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R + GP ++
Sbjct: 238 PTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR--NGPGMLV 294
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 295 LTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQ 353
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 354 MNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 387
Score = 390 (142.3 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 85/214 (39%), Positives = 142/214 (66%)
Query: 698 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEASLP-TEILEIIEKIGYAE 750
S+ ++ WR +E++++ +K G+ +P+P+ +++A P E+++ I+K G+ +
Sbjct: 180 SMSQVQVDIWR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQK 237
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R + GP ++
Sbjct: 238 PTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR--NGPGMLV 294
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 295 LTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQ 353
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 354 MNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 387
Score = 374 (136.7 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 394 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 453
Query: 1670 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 454 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +V+ T+DD +
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 573
Query: 1789 DLKQMMISSPVSTCPPELLNHPDAQHK 1815
+L +++ + S P +LL+ + Q+K
Sbjct: 574 ELIEILQRANQSI-PEDLLSMAE-QYK 598
Score = 368 (134.6 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 76/175 (43%), Positives = 111/175 (63%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 994
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 394 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 453
Query: 995 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 454 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +V+ T+DD
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDD 568
Score = 358 (131.1 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 74/162 (45%), Positives = 112/162 (69%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K G+ +PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R +
Sbjct: 230 IKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR- 287
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IAT
Sbjct: 288 -NGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIAT 345
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 346 PGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 387
Score = 199 (75.1 bits), Expect = 6.7e-45, Sum P(4) = 6.7e-45
Identities = 47/123 (38%), Positives = 70/123 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 300
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 394 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 453
Query: 301 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 454 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 360 LMA 362
L+A
Sbjct: 514 LIA 516
Score = 65 (27.9 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 32/126 (25%), Positives = 69/126 (54%)
Query: 1055 VATDVAGRGIDIKDVSMVINY-DMAKSIEDY-THRIG---RTGRAGKEGLAVSFCTKDDS 1109
+++D++ +GI ++ + D ++++D+ T ++ T A + GL VS T +
Sbjct: 476 LSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASR-GLDVSDVTHVFN 534
Query: 1110 HLF-YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1168
+ F ++++ + TGRAGK G +V+ T+DD + +L +++ + S P +LL+
Sbjct: 535 YNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSI-PEDLLSM 593
Query: 1169 PDAQHK 1174
+ Q+K
Sbjct: 594 AE-QYK 598
Score = 50 (22.7 bits), Expect = 6.7e-45, Sum P(4) = 6.7e-45
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 614 DASEDTSV-DYN---SIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 662
D S+ T V +YN +I + H+V GR G + +D K GE++E
Sbjct: 525 DVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIE 577
Score = 50 (22.7 bits), Expect = 6.7e-45, Sum P(4) = 6.7e-45
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1289 DASEDTSV-DYN---SIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 1337
D S+ T V +YN +I + H+V GR G + +D K GE++E
Sbjct: 525 DVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIE 577
Score = 38 (18.4 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 1407
+S+ MT+ DW++ E I + + +P+ + + E
Sbjct: 559 ESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAE 595
Score = 38 (18.4 bits), Expect = 1.2e-43, Sum P(4) = 1.2e-43
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 732
+S+ MT+ DW++ E I + + +P+ + + E
Sbjct: 559 ESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAE 595
Score = 37 (18.1 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQT+M +AT P
Sbjct: 394 RQTIMTSATWP 404
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 387 (141.3 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 387 (141.3 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 380 (138.8 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 89/213 (41%), Positives = 121/213 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ DL +++ + P L N H G+
Sbjct: 552 ITKDLLDLLVEAKQEV-PSWLENMAFEHHYKGS 583
Score = 377 (137.8 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ITKDLLDLLVEA 563
Score = 368 (134.6 bits), Expect = 2.6e-64, Sum P(3) = 2.6e-64
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAM 254
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 255 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 213 (80.0 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 57 (25.1 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 532 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAFEHHYKGS 583
Score = 41 (19.5 bits), Expect = 2.6e-64, Sum P(3) = 2.6e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 387 (141.3 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 387 (141.3 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 82/203 (40%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIVE 366
Score = 380 (138.8 bits), Expect = 5.8e-67, Sum P(2) = 5.8e-67
Identities = 89/213 (41%), Positives = 121/213 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ DL +++ + P L N H G+
Sbjct: 552 ITKDLLDLLVEAKQEV-PSWLENMAFEHHYKGS 583
Score = 377 (137.8 bits), Expect = 1.2e-66, Sum P(2) = 1.2e-66
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ITKDLLDLLVEA 563
Score = 368 (134.6 bits), Expect = 2.6e-64, Sum P(3) = 2.6e-64
Identities = 78/172 (45%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I +++
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAM 254
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 255 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 213 (80.0 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 57 (25.1 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 532 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAFEHHYKGS 583
Score = 41 (19.5 bits), Expect = 2.6e-64, Sum P(3) = 2.6e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 390 (142.3 bits), Expect = 6.5e-67, Sum P(2) = 6.5e-67
Identities = 85/214 (39%), Positives = 142/214 (66%)
Query: 1373 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEASLP-TEILEIIEKIGYAE 1425
S+ ++ WR +E++++ +K G+ +P+P+ +++A P E+++ I+K G+ +
Sbjct: 189 SMSQVQVDIWR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQK 246
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R + GP ++
Sbjct: 247 PTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR--NGPGMLV 303
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 304 LTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQ 362
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 363 MNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 396
Score = 390 (142.3 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 85/214 (39%), Positives = 142/214 (66%)
Query: 698 SLDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEASLP-TEILEIIEKIGYAE 750
S+ ++ WR +E++++ +K G+ +P+P+ +++A P E+++ I+K G+ +
Sbjct: 189 SMSQVQVDIWR--KENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQK 246
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R + GP ++
Sbjct: 247 PTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR--NGPGMLV 303
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 304 LTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQ 362
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 363 MNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 396
Score = 374 (136.7 bits), Expect = 6.5e-67, Sum P(2) = 6.5e-67
Identities = 83/207 (40%), Positives = 128/207 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 403 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 462
Query: 1670 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 463 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +V+ T+DD +
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAG 582
Query: 1789 DLKQMMISSPVSTCPPELLNHPDAQHK 1815
+L +++ + S P +LL+ + Q+K
Sbjct: 583 ELIEILQRANQSI-PEDLLSMAE-QYK 607
Score = 368 (134.6 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 76/175 (43%), Positives = 111/175 (63%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 994
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 403 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 462
Query: 995 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 463 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +V+ T+DD
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDD 577
Score = 358 (131.1 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 74/162 (45%), Positives = 112/162 (69%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K G+ +PTPIQ QA PI LQ D+IG+A+TG+GKTL++L+P + + S P ++R +
Sbjct: 239 IKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQP-VSRGKR- 296
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA Q+ E +K+ G+++V + GG +R+ Q + G +I+IAT
Sbjct: 297 -NGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYGGGNRKGQIQDIMKGVDIIIAT 354
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N ++ L TY+VLDEAD+M+D+GFE + KIL
Sbjct: 355 PGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 396
Score = 199 (75.1 bits), Expect = 8.6e-45, Sum P(4) = 8.6e-45
Identities = 47/123 (38%), Positives = 70/123 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 300
RQT+M +AT P + +LA SYL+ P VY+G++ + ++Q + I +E++KR E
Sbjct: 403 RQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEF 462
Query: 301 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L K VI+FV++K AD L+ L G +LHG + Q RE AL+ K G I
Sbjct: 463 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 360 LMA 362
L+A
Sbjct: 523 LIA 525
Score = 65 (27.9 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 32/126 (25%), Positives = 69/126 (54%)
Query: 1055 VATDVAGRGIDIKDVSMVINY-DMAKSIEDY-THRIG---RTGRAGKEGLAVSFCTKDDS 1109
+++D++ +GI ++ + D ++++D+ T ++ T A + GL VS T +
Sbjct: 485 LSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASR-GLDVSDVTHVFN 543
Query: 1110 HLF-YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1168
+ F ++++ + TGRAGK G +V+ T+DD + +L +++ + S P +LL+
Sbjct: 544 YNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSI-PEDLLSM 602
Query: 1169 PDAQHK 1174
+ Q+K
Sbjct: 603 AE-QYK 607
Score = 50 (22.7 bits), Expect = 8.6e-45, Sum P(4) = 8.6e-45
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 614 DASEDTSV-DYN---SIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 662
D S+ T V +YN +I + H+V GR G + +D K GE++E
Sbjct: 534 DVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIE 586
Score = 50 (22.7 bits), Expect = 8.6e-45, Sum P(4) = 8.6e-45
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1289 DASEDTSV-DYN---SIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 1337
D S+ T V +YN +I + H+V GR G + +D K GE++E
Sbjct: 534 DVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIE 586
Score = 38 (18.4 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 1407
+S+ MT+ DW++ E I + + +P+ + + E
Sbjct: 568 ESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAE 604
Score = 38 (18.4 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 732
+S+ MT+ DW++ E I + + +P+ + + E
Sbjct: 568 ESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAE 604
Score = 37 (18.1 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQT+M +AT P
Sbjct: 403 RQTIMTSATWP 413
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 386 (140.9 bits), Expect = 9.5e-67, Sum P(2) = 9.5e-67
Identities = 82/203 (40%), Positives = 123/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + + G P + ++ + ++ I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 772 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF + +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIIE 366
Score = 386 (140.9 bits), Expect = 9.5e-67, Sum P(2) = 9.5e-67
Identities = 82/203 (40%), Positives = 123/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + + G P + ++ + ++ I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 164 DDIPVEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 223
Query: 1447 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 224 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIY 283
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF + +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 284 EEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 343
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 344 LVLDEADRMLDMGFEPQIRRIIE 366
Score = 379 (138.5 bits), Expect = 9.5e-67, Sum P(2) = 9.5e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 432
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGTDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 552 ISKDLLDLLVEA 563
Score = 379 (138.5 bits), Expect = 9.5e-67, Sum P(2) = 9.5e-67
Identities = 84/192 (43%), Positives = 115/192 (59%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 432
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGTDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 492 SPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNIN 551
Query: 1786 LFYDLKQMMISS 1797
+ DL +++ +
Sbjct: 552 ISKDLLDLLVEA 563
Score = 362 (132.5 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 78/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI------QSLPKI 55
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I ++L +
Sbjct: 195 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAV 254
Query: 56 ---ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
R Q P ++++APTRELA QI EE KF + +V GG +Q L
Sbjct: 255 KESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLE 314
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 315 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIE 366
Score = 217 (81.4 bits), Expect = 9.0e-48, Sum P(3) = 9.0e-48
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 373 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLL 432
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 433 DLLNATGTDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 491
Query: 357 KDILMA 362
IL+A
Sbjct: 492 SPILVA 497
Score = 54 (24.1 bits), Expect = 9.0e-48, Sum P(3) = 9.0e-48
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGR G GLA SF + + ++ DL +++ +
Sbjct: 532 TGRVGNLGLATSFFNERNINISKDLLDLLVEA 563
Score = 41 (19.5 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 373 KGVRHTMMFSATFP 386
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 388 (141.6 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 206 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 265
Query: 772 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 266 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 325
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 326 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 385
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 386 LVLDEADRMLDMGFEPQIRRIVE 408
Score = 388 (141.6 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 206 DDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 265
Query: 1447 AETGSGKTLAFLLPLLVWIQS---------LPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I S + + R Q P ++++APTRELA QI
Sbjct: 266 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIY 325
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 326 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 385
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 386 LVLDEADRMLDMGFEPQIRRIVE 408
Score = 379 (138.5 bits), Expect = 1.0e-66, Sum P(2) = 1.0e-66
Identities = 89/215 (41%), Positives = 121/215 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 415 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 474
Query: 1668 EVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKG 1723
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ +
Sbjct: 475 DLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS 533
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +
Sbjct: 534 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 593
Query: 1784 SHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
++ DL +++ + P L N H G+
Sbjct: 594 INITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 627
Score = 376 (137.4 bits), Expect = 2.1e-66, Sum P(2) = 2.1e-66
Identities = 84/194 (43%), Positives = 115/194 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 415 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 474
Query: 993 EVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKG 1048
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ +
Sbjct: 475 DLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS 533
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
G ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +
Sbjct: 534 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 593
Query: 1109 SHLFYDLKQMMISS 1122
++ DL +++ +
Sbjct: 594 INITKDLLDLLVEA 607
Score = 369 (135.0 bits), Expect = 5.9e-64, Sum P(3) = 5.9e-64
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS---------L 52
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 237 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 296
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 297 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 356
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 357 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 408
Score = 212 (79.7 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 52/128 (40%), Positives = 71/128 (55%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 415 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 474
Query: 299 EVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKG 354
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ +
Sbjct: 475 DLLNATESGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS 533
Query: 355 GSKDILMA 362
G IL+A
Sbjct: 534 GKSPILVA 541
Score = 57 (25.1 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
TGR G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 576 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 627
Score = 41 (19.5 bits), Expect = 5.9e-64, Sum P(3) = 5.9e-64
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 415 KGVRHTMMFSATFP 428
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 408 (148.7 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 94/218 (43%), Positives = 138/218 (63%)
Query: 695 TEKSLDEMTERD-WRIFREDYSIT---IKGGK---VPDPVRNWKEA-SLPTEILEIIEKI 746
T S E D WR +E+++IT +K G+ +P+P + +A E++E I+K
Sbjct: 203 TATSAMSKVEADSWR--KENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKA 260
Query: 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806
G+ +PTPIQ QA PI LQ D+IGVA+TG+GKTL +L+P + + P + + P
Sbjct: 261 GFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNR---P 317
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
+++ PTRELA Q+E E K+ G+R+V V GG +R+EQ L+ G +I+IATPGRL
Sbjct: 318 GMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRL 376
Query: 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
D+ + ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 377 NDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Score = 408 (148.7 bits), Expect = 3.8e-66, Sum P(2) = 3.8e-66
Identities = 94/218 (43%), Positives = 138/218 (63%)
Query: 1370 TEKSLDEMTERD-WRIFREDYSIT---IKGGK---VPDPVRNWKEA-SLPTEILEIIEKI 1421
T S E D WR +E+++IT +K G+ +P+P + +A E++E I+K
Sbjct: 203 TATSAMSKVEADSWR--KENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKA 260
Query: 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481
G+ +PTPIQ QA PI LQ D+IGVA+TG+GKTL +L+P + + P + + P
Sbjct: 261 GFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNR---P 317
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
+++ PTRELA Q+E E K+ G+R+V V GG +R+EQ L+ G +I+IATPGRL
Sbjct: 318 GMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRL 376
Query: 1542 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
D+ + ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 377 NDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Score = 373 (136.4 bits), Expect = 5.7e-62, Sum P(4) = 5.7e-62
Identities = 78/162 (48%), Positives = 110/162 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+K G+ +PTPIQ QA PI LQ D+IGVA+TG+GKTL +L+P + + P + +
Sbjct: 257 IKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNR 316
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +++ PTRELA Q+E E K+ G+R+V V GG +R+EQ L+ G +I+IAT
Sbjct: 317 ---PGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRDEQIEELKKGVDIIIAT 372
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ + ++ L TY+VLDEAD+M+DMGFEP + KIL
Sbjct: 373 PGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Score = 348 (127.6 bits), Expect = 3.8e-66, Sum P(2) = 3.8e-66
Identities = 77/200 (38%), Positives = 124/200 (62%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 1669
RQTVM +AT P +V RLA+SYL+ P VY+G++ ++Q + + +E++K +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTF 480
Query: 1670 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L + VI+FV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V N+D ++IE+Y HRIGRTGRAG+ G++++ T++D +
Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVAS 600
Query: 1789 DLKQMMISSPVSTCPPELLN 1808
+L ++ + S P EL++
Sbjct: 601 ELINILERANQSI-PEELVS 619
Score = 344 (126.2 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 72/175 (41%), Positives = 112/175 (64%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 994
RQTVM +AT P +V RLA+SYL+ P VY+G++ ++Q + + +E++K +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTF 480
Query: 995 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L + VI+FV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V N+D ++IE+Y HRIGRTGRAG+ G++++ T++D
Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595
Score = 180 (68.4 bits), Expect = 6.0e-45, Sum P(4) = 6.0e-45
Identities = 45/123 (36%), Positives = 70/123 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLMEV 300
RQTVM +AT P +V RLA+SYL+ P VY+G++ ++Q + + +E++K +
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTF 480
Query: 301 L-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L + VI+FV++K AD L+ L + +LHG + Q RE AL + K G I
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 360 LMA 362
L+A
Sbjct: 541 LIA 543
Score = 54 (24.1 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
TGRAG+ G++++ T++D + +L ++ + S P EL++
Sbjct: 578 TGRAGRTGVSITTLTRNDWRVASELINILERANQSI-PEELVS 619
Score = 42 (19.8 bits), Expect = 1.9e-65, Sum P(3) = 1.9e-65
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 1407
T S+ +T DWR+ E +I + + +P+ + + E
Sbjct: 584 TGVSITTLTRNDWRVASELINILERANQSIPEELVSMAE 622
Score = 42 (19.8 bits), Expect = 1.0e-43, Sum P(4) = 1.0e-43
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 695 TEKSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKE 732
T S+ +T DWR+ E +I + + +P+ + + E
Sbjct: 584 TGVSITTLTRNDWRVASELINILERANQSIPEELVSMAE 622
Score = 38 (18.4 bits), Expect = 5.7e-62, Sum P(4) = 5.7e-62
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQTVM +AT P
Sbjct: 421 RQTVMTSATWP 431
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 383 (139.9 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 76/167 (45%), Positives = 113/167 (67%)
Query: 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801
++ G++ P+PIQ Q+ PI +QNRDI+ +A+TGSGKTL +L+P + +Q + +RM
Sbjct: 243 MVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-- 300
Query: 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861
GP ++++PTRELA QI+ E KFG I + GG + Q + G +IV+A
Sbjct: 301 ---GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVA 357
Query: 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
TPGRL D+LE + + L+Q +Y+VLDEADRM+DMGFEP ++KI+ +P
Sbjct: 358 TPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP 404
Score = 383 (139.9 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 76/167 (45%), Positives = 113/167 (67%)
Query: 1417 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476
++ G++ P+PIQ Q+ PI +QNRDI+ +A+TGSGKTL +L+P + +Q + +RM
Sbjct: 243 MVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-- 300
Query: 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536
GP ++++PTRELA QI+ E KFG I + GG + Q + G +IV+A
Sbjct: 301 ---GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVA 357
Query: 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
TPGRL D+LE + + L+Q +Y+VLDEADRM+DMGFEP ++KI+ +P
Sbjct: 358 TPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP 404
Score = 383 (139.9 bits), Expect = 1.5e-64, Sum P(2) = 1.5e-64
Identities = 76/167 (45%), Positives = 113/167 (67%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
++ G++ P+PIQ Q+ PI +QNRDI+ +A+TGSGKTL +L+P + +Q + +RM
Sbjct: 243 MVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-- 300
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP ++++PTRELA QI+ E KFG I + GG + Q + G +IV+A
Sbjct: 301 ---GPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVA 357
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGRL D+LE + + L+Q +Y+VLDEADRM+DMGFEP ++KI+ +P
Sbjct: 358 TPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVP 404
Score = 364 (133.2 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 78/199 (39%), Positives = 119/199 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 1668
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +L+ +K +L +
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQ 466
Query: 1669 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
+L ++ +IIF + K+ D LA+ L + + A +HG K Q +R+ LN + G
Sbjct: 467 ILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
+LVATDVA RG+D+KD+ +V+NYD +EDY HRIGRTGRAG GLA +F D+
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585
Query: 1788 YDLKQMMISSPVSTCPPEL 1806
DL +++ + PP++
Sbjct: 586 SDLIKILEGANQKV-PPQV 603
Score = 362 (132.5 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
Identities = 76/187 (40%), Positives = 114/187 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 993
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +L+ +K +L +
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQ 466
Query: 994 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
+L ++ +IIF + K+ D LA+ L + + A +HG K Q +R+ LN + G
Sbjct: 467 ILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
+LVATDVA RG+D+KD+ +V+NYD +EDY HRIGRTGRAG GLA +F D+
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585
Query: 1113 YDLKQMM 1119
DL +++
Sbjct: 586 SDLIKIL 592
Score = 181 (68.8 bits), Expect = 9.0e-46, Sum P(3) = 9.0e-46
Identities = 42/124 (33%), Positives = 70/124 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLME 299
RQT+M+TAT P V ++A L PA V IG+V + + I Q + +L+ +K +L +
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQ 466
Query: 300 VL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
+L ++ +IIF + K+ D LA+ L + + A +HG K Q +R+ LN + G
Sbjct: 467 ILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 359 ILMA 362
+L+A
Sbjct: 526 VLVA 529
Score = 68 (29.0 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 714 YSITIKGGKVPDPVRNWKEASLPTEIL 740
+ IT+ GG+VP P+ +++ LP E+L
Sbjct: 147 HEITVSGGQVPPPLMSFEATGLPNELL 173
Score = 68 (29.0 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 1389 YSITIKGGKVPDPVRNWKEASLPTEIL 1415
+ IT+ GG+VP P+ +++ LP E+L
Sbjct: 147 HEITVSGGQVPPPLMSFEATGLPNELL 173
Score = 54 (24.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 39/147 (26%), Positives = 70/147 (47%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP- 253
RQT+M+TAT P ++ + + P + + ++L+AN K QT+ A M
Sbjct: 407 RQTLMYTATWPK-EVRKIAADLLVNPAQVNIGNVDELVAN----KSITQTIEVLAPMEKH 461
Query: 254 -AVERLARSYLRRPATVYIGSVGKPTERI-EQIVYILSEQ--------DKRK-KLMEVLN 302
+E++ RS + P + I + T+R+ +Q+ L+ DK + + +VLN
Sbjct: 462 SRLEQILRS--QEPGSKII--IFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLN 517
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLE 327
R + PV++ DV A+GL+
Sbjct: 518 QFRSGRTPVLV------ATDVAARGLD 538
Score = 51 (23.0 bits), Expect = 9.0e-46, Sum P(3) = 9.0e-46
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG GLA +F D+ DL +++ + PP++
Sbjct: 564 TGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKV-PPQV 603
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 392 (143.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 95/231 (41%), Positives = 144/231 (62%)
Query: 695 TEKSLDEMTERDWRIFREDYSITIKGGK----VPDPVRNWKE--ASLPTEILEIIEKIGY 748
T+ ++ + E + +I Y K G+ +P+PV +++ A P ++LE I K+G+
Sbjct: 246 TKSEIERIREENNKI-TVSYVFEPKEGETSPPIPNPVWTFEQCFAEYP-DMLEEITKMGF 303
Query: 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI--QSLPKIARMEDADQGP 806
++P+PIQ QA PI LQ D+IG+A+TG+GKTLAFLLP ++ QS P+ R G
Sbjct: 304 SKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTR-----GGA 358
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
+++APTRELA QIE E K+ G++ V V GG +R Q L G EI+I TPGRL
Sbjct: 359 NVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLERGAEIIICTPGRL 417
Query: 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
D++ + ++ TY+VLDEADRM+DMGFEP ++K++ +++PD +
Sbjct: 418 NDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM-----LDIRPDRQ 463
Score = 392 (143.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 95/231 (41%), Positives = 144/231 (62%)
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGK----VPDPVRNWKE--ASLPTEILEIIEKIGY 1423
T+ ++ + E + +I Y K G+ +P+PV +++ A P ++LE I K+G+
Sbjct: 246 TKSEIERIREENNKI-TVSYVFEPKEGETSPPIPNPVWTFEQCFAEYP-DMLEEITKMGF 303
Query: 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI--QSLPKIARMEDADQGP 1481
++P+PIQ QA PI LQ D+IG+A+TG+GKTLAFLLP ++ QS P+ R G
Sbjct: 304 SKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTR-----GGA 358
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
+++APTRELA QIE E K+ G++ V V GG +R Q L G EI+I TPGRL
Sbjct: 359 NVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLERGAEIIICTPGRL 417
Query: 1542 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
D++ + ++ TY+VLDEADRM+DMGFEP ++K++ +++PD +
Sbjct: 418 NDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM-----LDIRPDRQ 463
Score = 374 (136.7 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 82/201 (40%), Positives = 123/201 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQ-DKRKKLME 1668
RQT+M +AT PP V RLA+SY++ P V +GS+ T ++QI+ ++ + DK +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521
Query: 1669 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
V N +IIF +K AD L+ L G+ +HG + Q RE A+ +K G
Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
ILVATDVA RG+DI+D++ VINYD +IE+Y HR+GRTGRAG++G ++SF T++D +
Sbjct: 582 ILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMA 641
Query: 1788 YDLKQMMISSPVSTCPPELLN 1808
+L +++ + P EL N
Sbjct: 642 KELIEILQEAEQEV-PDELHN 661
Score = 370 (135.3 bits), Expect = 3.0e-66, Sum P(2) = 3.0e-66
Identities = 78/187 (41%), Positives = 118/187 (63%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQ-DKRKKLME 993
RQT+M +AT PP V RLA+SY++ P V +GS+ T ++QI+ ++ + DK +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521
Query: 994 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
V N +IIF +K AD L+ L G+ +HG + Q RE A+ +K G
Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
ILVATDVA RG+DI+D++ VINYD +IE+Y HR+GRTGRAG++G ++SF T++D +
Sbjct: 582 ILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMA 641
Query: 1113 YDLKQMM 1119
+L +++
Sbjct: 642 KELIEIL 648
Score = 368 (134.6 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 82/177 (46%), Positives = 117/177 (66%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI--QSLPKIARME 59
I K+G+++P+PIQ QA PI LQ D+IG+A+TG+GKTLAFLLP ++ QS P+ R
Sbjct: 298 ITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRGTR-- 355
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G +++APTRELA QIE E K+ G++ V V GG +R Q L G EI+I
Sbjct: 356 ---GGANVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLERGAEIII 411
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
TPGRL D++ + ++ TY+VLDEADRM+DMGFEP ++K++ +++PD +
Sbjct: 412 CTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVM-----LDIRPDRQ 463
Score = 182 (69.1 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 45/124 (36%), Positives = 68/124 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQ-DKRKKLME 299
RQT+M +AT PP V RLA+SY++ P V +GS+ T ++QI+ ++ + DK +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521
Query: 300 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
V N +IIF +K AD L+ L G+ +HG + Q RE A+ +K G
Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581
Query: 359 ILMA 362
IL+A
Sbjct: 582 ILVA 585
Score = 67 (28.6 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
TGRAG++G ++SF T++D + +L +++ + P EL N
Sbjct: 620 TGRAGRQGTSISFFTREDWAMAKELIEILQEAEQEV-PDELHN 661
Score = 44 (20.5 bits), Expect = 1.3e-63, Sum P(3) = 1.3e-63
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 195 RQTVMFTATMPP 206
RQT+M +AT PP
Sbjct: 462 RQTIMTSATWPP 473
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 386 (140.9 bits), Expect = 1.3e-66, Sum P(2) = 1.3e-66
Identities = 82/203 (40%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 157 DDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 216
Query: 772 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSG T AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 217 AQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 276
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 277 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 336
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 337 LVLDEADRMLDMGFEPQIRRIVE 359
Score = 386 (140.9 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 82/203 (40%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 157 DDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 216
Query: 1447 AETGSGKTLAFLLPLLVWI---------QSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSG T AFLLP+L I +++ + R Q P ++++APTRELA QI
Sbjct: 217 AQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIY 276
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 277 EEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 336
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 337 LVLDEADRMLDMGFEPQIRRIVE 359
Score = 377 (137.8 bits), Expect = 1.3e-66, Sum P(2) = 1.3e-66
Identities = 88/213 (41%), Positives = 124/213 (58%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 366 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 425
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 426 DLLNATGRDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 484
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
K ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 485 KPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLN 544
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDS 1143
+ DL +++ + + E +A K +S
Sbjct: 545 ITKDLLDLLVEAKQEVPSWLESMAYEHHYKGNS 577
Score = 376 (137.4 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 84/192 (43%), Positives = 117/192 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 366 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 425
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 426 DLLNATGRDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 484
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
K ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 485 KPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLN 544
Query: 1786 LFYDLKQMMISS 1797
+ DL +++ +
Sbjct: 545 ITKDLLDLLVEA 556
Score = 362 (132.5 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 77/172 (44%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI---------QSL 52
IE Y PTP+Q+ AIPI + RD++ A+TGSG T AFLLP+L I +++
Sbjct: 188 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAM 247
Query: 53 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
+ R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 248 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLE 307
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 308 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 359
Score = 212 (79.7 bits), Expect = 2.6e-47, Sum P(3) = 2.6e-47
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 366 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLL 425
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L + Y ACT +HG + Q+ RE AL+ + G
Sbjct: 426 DLLNATGRDSLTLVFVETKKGADSLENFLFQERY-ACTSIHGDRSQKDREEALHQFRSGR 484
Query: 357 KDILMA 362
K IL+A
Sbjct: 485 KPILVA 490
Score = 54 (24.1 bits), Expect = 2.6e-47, Sum P(3) = 2.6e-47
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGR G GLA SF + + ++ DL +++ +
Sbjct: 525 TGRVGNLGLATSFFNERNLNITKDLLDLLVEA 556
Score = 41 (19.5 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 366 KGVRHTMMFSATFP 379
Score = 37 (18.1 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 1147 YDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMM 1180
YD + + + + CPP + N D + G ++M
Sbjct: 156 YD--DIPVEATGNNCPPHIENFSDVEM--GEIIM 185
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 374 (136.7 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 77/173 (44%), Positives = 105/173 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+ F+ATMP AVE LA ++LR PA V + RIEQ V + + +K L+E +
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKI 245
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ I+F K GAD + K L K ++ +HG K Q QRE AL + K G ILV
Sbjct: 246 RDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
ATD+A RGI + ++ VINYD+ E + HRIGRT RAG G+A+SFC++D+
Sbjct: 306 ATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDE 358
Score = 374 (136.7 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 77/173 (44%), Positives = 105/173 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+ F+ATMP AVE LA ++LR PA V + RIEQ V + + +K L+E +
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKI 245
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ I+F K GAD + K L K ++ +HG K Q QRE AL + K G ILV
Sbjct: 246 RDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
ATD+A RGI + ++ VINYD+ E + HRIGRT RAG G+A+SFC++D+
Sbjct: 306 ATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDE 358
Score = 349 (127.9 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 76/180 (42%), Positives = 112/180 (62%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L IL + K GY PTPIQ QAIP+ +Q RDI+G+A+TG+GKTLAF P+L
Sbjct: 8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL- 66
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
L + A +G +++APTRELA QI +G L +R V+V GG Q
Sbjct: 67 --DRLSRNASPAPV-RGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQ 123
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+L G I++ATPGRLID++E R + L++ ++LDEAD+M+D+GF ++ I + +P
Sbjct: 124 IRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP 183
Score = 349 (127.9 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 76/180 (42%), Positives = 112/180 (62%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L IL + K GY PTPIQ QAIP+ +Q RDI+G+A+TG+GKTLAF P+L
Sbjct: 8 DFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL- 66
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
L + A +G +++APTRELA QI +G L +R V+V GG Q
Sbjct: 67 --DRLSRNASPAPV-RGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQ 123
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+L G I++ATPGRLID++E R + L++ ++LDEAD+M+D+GF ++ I + +P
Sbjct: 124 IRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP 183
Score = 341 (125.1 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 73/166 (43%), Positives = 106/166 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ K GY PTPIQ QAIP+ +Q RDI+G+A+TG+GKTLAF P+L L + A
Sbjct: 22 LTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPIL---DRLSRNASPAPV 78
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+G +++APTRELA QI +G L +R V+V GG Q +L G I++AT
Sbjct: 79 -RGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVAT 137
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRLID++E R + L++ ++LDEAD+M+D+GF ++ I + +P
Sbjct: 138 PGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVP 183
Score = 217 (81.4 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 49/121 (40%), Positives = 67/121 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+ F+ATMP AVE LA ++LR PA V + RIEQ V + + +K L+E +
Sbjct: 186 RQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKI 245
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ I+F K GAD + K L K ++ +HG K Q QRE AL + K G IL+
Sbjct: 246 RDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 362 A 362
A
Sbjct: 306 A 306
Score = 64 (27.6 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
T RAG G+A+SFC++D+
Sbjct: 341 TARAGNSGVAISFCSRDE 358
Score = 52 (23.4 bits), Expect = 5.5e-36, Sum P(3) = 5.5e-36
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTE 223
RQT+ F+ATMP K +E + T L+ E
Sbjct: 186 RQTLFFSATMP--KAVESLAATFLRNPAE 212
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 387 (141.3 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 94/239 (39%), Positives = 145/239 (60%)
Query: 1373 SLDEMTERDWRIFREDYSITI----KGGK--VPDPVRNWKEA--SLPTEILEIIEKIGYA 1424
SL E WR +E+++I +G K +P P +++A P EI++ I + G+
Sbjct: 166 SLSEAQVEIWR--KENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQYP-EIMQSIRRAGFQ 222
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+PTPIQ Q+ PI LQ D+IG+A+TG+GKTL++L+P + I S P ++R + GP +
Sbjct: 223 KPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQP-VSRKQR--NGPGML 279
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
++ PTRELA Q+E E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 280 VLTPTRELALQVEAECSKY-LYKGLKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLNDL 338
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMPVTNLKPDTEDAEDENKLLA 1602
N ++ L TY+VLDEAD+M+D+GFE + KIL + P T D + LA
Sbjct: 339 QMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPDSTRRLA 397
Score = 387 (141.3 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 94/239 (39%), Positives = 145/239 (60%)
Query: 698 SLDEMTERDWRIFREDYSITI----KGGK--VPDPVRNWKEA--SLPTEILEIIEKIGYA 749
SL E WR +E+++I +G K +P P +++A P EI++ I + G+
Sbjct: 166 SLSEAQVEIWR--KENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQYP-EIMQSIRRAGFQ 222
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+PTPIQ Q+ PI LQ D+IG+A+TG+GKTL++L+P + I S P ++R + GP +
Sbjct: 223 KPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQP-VSRKQR--NGPGML 279
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
++ PTRELA Q+E E +K+ G+++V + GG +R+ Q + G +I+IATPGRL D+
Sbjct: 280 VLTPTRELALQVEAECSKY-LYKGLKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLNDL 338
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMPVTNLKPDTEDAEDENKLLA 927
N ++ L TY+VLDEAD+M+D+GFE + KIL + P T D + LA
Sbjct: 339 QMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPDSTRRLA 397
Score = 372 (136.0 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 83/210 (39%), Positives = 128/210 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 1669
RQTVM TA+ P + RLA+SYL++P VY+G++ T ++Q + + +E++KR + E
Sbjct: 380 RQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEF 439
Query: 1670 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
L K VI+FV++K AD L+ L G +LHG + Q R+ AL + G I
Sbjct: 440 LQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +++ T+DD +
Sbjct: 500 LIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIAD 559
Query: 1789 DLKQMMISSPVSTCPPELLNHPDA---QHK 1815
+L +++ + PP L + D QHK
Sbjct: 560 ELIKILQRAN-QIVPPSLRSMADRFKKQHK 588
Score = 364 (133.2 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 75/175 (42%), Positives = 113/175 (64%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 994
RQTVM TA+ P + RLA+SYL++P VY+G++ T ++Q + + +E++KR + E
Sbjct: 380 RQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEF 439
Query: 995 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
L K VI+FV++K AD L+ L G +LHG + Q R+ AL + G I
Sbjct: 440 LQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
L+ATD+A RG+D+ DV+ V NY+ ++IE+Y HR+GRTGRAGK G +++ T+DD
Sbjct: 500 LIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDD 554
Score = 360 (131.8 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 79/186 (42%), Positives = 119/186 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +PTPIQ Q+ PI LQ D+IG+A+TG+GKTL++L+P + I S P ++R +
Sbjct: 216 IRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQP-VSRKQR- 273
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA Q+E E +K+ G+++V + GG +R+ Q + G +I+IAT
Sbjct: 274 -NGPGMLVLTPTRELALQVEAECSKY-LYKGLKSVCIYGGGNRKGQIQDVTKGVDIIIAT 331
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMPVTNLKPDTEDAED 180
PGRL D+ N ++ L TY+VLDEAD+M+D+GFE + KIL + P T D
Sbjct: 332 PGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPD 391
Query: 181 ENKLLA 186
+ LA
Sbjct: 392 STRRLA 397
Score = 198 (74.8 bits), Expect = 4.5e-44, Sum P(4) = 4.5e-44
Identities = 47/123 (38%), Positives = 72/123 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 300
RQTVM TA+ P + RLA+SYL++P VY+G++ T ++Q + + +E++KR + E
Sbjct: 380 RQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEEKRSLVKEF 439
Query: 301 LNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
L K VI+FV++K AD L+ L G +LHG + Q R+ AL + G I
Sbjct: 440 LQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKI 499
Query: 360 LMA 362
L+A
Sbjct: 500 LIA 502
Score = 69 (29.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 34/129 (26%), Positives = 67/129 (51%)
Query: 1055 VATDVAGRGIDIKDVSMVINY-DMAKSIEDY-THRIG---RTGRAGKEGLAVSFCTKDDS 1109
+++D++ +GI ++ + D +++ED+ T R+ T A + GL VS T +
Sbjct: 462 LSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAAR-GLDVSDVTHVYN 520
Query: 1110 HLF-YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNH 1168
+ F ++++ + TGRAGK G +++ T+DD + +L +++ + PP L +
Sbjct: 521 YNFPRNIEEYVHRVGRTGRAGKIGESITLVTQDDWKIADELIKILQRAN-QIVPPSLRSM 579
Query: 1169 PDA---QHK 1174
D QHK
Sbjct: 580 ADRFKKQHK 588
Score = 38 (18.4 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDP 1401
+S+ +T+ DW+I E I + ++ P
Sbjct: 545 ESITLVTQDDWKIADELIKILQRANQIVPP 574
Score = 38 (18.4 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQTVM TA+ P
Sbjct: 380 RQTVMTTASWP 390
Score = 38 (18.4 bits), Expect = 4.5e-44, Sum P(4) = 4.5e-44
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDP 726
+S+ +T+ DW+I E I + ++ P
Sbjct: 545 ESITLVTQDDWKIADELIKILQRANQIVPP 574
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 387 (141.3 bits), Expect = 2.2e-66, Sum P(2) = 2.2e-66
Identities = 90/213 (42%), Positives = 122/213 (57%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 405 KGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 464
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 465 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 523
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +
Sbjct: 524 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGN 583
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDS 1143
+ DL +++ + + E LA K S
Sbjct: 584 ITKDLLDILVEAKQEVPSWLESLAYEHQHKSSS 616
Score = 384 (140.2 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 85/192 (44%), Positives = 116/192 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 405 KGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 464
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 465 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 523
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + +
Sbjct: 524 CPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGN 583
Query: 1786 LFYDLKQMMISS 1797
+ DL +++ +
Sbjct: 584 ITKDLLDILVEA 595
Score = 376 (137.4 bits), Expect = 2.2e-66, Sum P(2) = 2.2e-66
Identities = 86/217 (39%), Positives = 126/217 (58%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P P+ + + + I+ I Y PTP+Q+ AIPI RD++
Sbjct: 192 DDIPVEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMAC 251
Query: 772 AETGSGKTLAFLLPLLVWI------QSLP--KIARMEDADQG-----PYAIIMAPTRELA 818
A+TGSGKT AFLLP+L I ++L K + E+ G P ++++APTRELA
Sbjct: 252 AQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELA 311
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
QI +E KF +R +V GG +Q L GC +++ATPGRL+D++E + L+
Sbjct: 312 LQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLD 371
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKILEY--MPVTNLK 913
C Y+VLDEADRM+DMGFEP +++I+E MP L+
Sbjct: 372 YCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLR 408
Score = 376 (137.4 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 86/217 (39%), Positives = 126/217 (58%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P P+ + + + I+ I Y PTP+Q+ AIPI RD++
Sbjct: 192 DDIPVEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMAC 251
Query: 1447 AETGSGKTLAFLLPLLVWI------QSLP--KIARMEDADQG-----PYAIIMAPTRELA 1493
A+TGSGKT AFLLP+L I ++L K + E+ G P ++++APTRELA
Sbjct: 252 AQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELA 311
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
QI +E KF +R +V GG +Q L GC +++ATPGRL+D++E + L+
Sbjct: 312 LQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLD 371
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKILEY--MPVTNLK 1588
C Y+VLDEADRM+DMGFEP +++I+E MP L+
Sbjct: 372 YCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLR 408
Score = 358 (131.1 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 80/181 (44%), Positives = 113/181 (62%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI------QSLP--KIARM 58
Y PTP+Q+ AIPI RD++ A+TGSGKT AFLLP+L I ++L K +
Sbjct: 228 YTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQ 287
Query: 59 EDADQG-----PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 113
E+ G P ++++APTRELA QI +E KF +R +V GG +Q L
Sbjct: 288 ENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLER 347
Query: 114 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY--MPVTNL 171
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E MP L
Sbjct: 348 GCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 407
Query: 172 K 172
+
Sbjct: 408 R 408
Score = 220 (82.5 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 53/126 (42%), Positives = 73/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 405 KGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 464
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 465 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 523
Query: 357 KDILMA 362
IL+A
Sbjct: 524 CPILVA 529
Score = 54 (24.1 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGR G GLA SF + ++ DL +++ +
Sbjct: 564 TGRVGNLGLATSFFNDKNGNITKDLLDILVEA 595
Score = 46 (21.3 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 192 KKYRQTVMFTATMP 205
K RQT+MF+AT P
Sbjct: 405 KGLRQTMMFSATFP 418
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 387 (141.3 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 84/203 (41%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI RD++
Sbjct: 159 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 218
Query: 772 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 219 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 278
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 279 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 338
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 339 LVLDEADRMLDMGFEPQIRRIVE 361
Score = 387 (141.3 bits), Expect = 2.2e-65, Sum P(3) = 2.2e-65
Identities = 84/203 (41%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI RD++
Sbjct: 159 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 218
Query: 1447 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 219 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 278
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 279 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 338
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 339 LVLDEADRMLDMGFEPQIRRIVE 361
Score = 374 (136.7 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 87/212 (41%), Positives = 119/212 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 368 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 427
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 428 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 486
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 487 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 546
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N H G
Sbjct: 547 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKG 577
Score = 372 (136.0 bits), Expect = 3.8e-66, Sum P(2) = 3.8e-66
Identities = 82/192 (42%), Positives = 114/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 368 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 427
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 428 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 486
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 487 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 546
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 547 ITKDLLDLLVEA 558
Score = 364 (133.2 bits), Expect = 3.3e-63, Sum P(3) = 3.3e-63
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI------QSLPKI 55
IE Y PTP+Q+ AIPI RD++ A+TGSGKT AFLLP+L I ++L +
Sbjct: 190 IELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAV 249
Query: 56 ---ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 250 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 309
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 310 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 361
Score = 207 (77.9 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 50/126 (39%), Positives = 70/126 (55%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 368 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 427
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 428 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 486
Query: 357 KDILMA 362
IL+A
Sbjct: 487 SPILVA 492
Score = 58 (25.5 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N H G
Sbjct: 527 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEV-PSWLENMAYEHHYKG 577
Score = 41 (19.5 bits), Expect = 3.3e-63, Sum P(3) = 3.3e-63
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 368 KGVRHTMMFSATFP 381
Score = 37 (18.1 bits), Expect = 2.2e-65, Sum P(3) = 2.2e-65
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 1147 YDLKQMMISSPVSTCPPELLNHPD 1170
YD + + + S CPP + N D
Sbjct: 158 YD--DIPVEATGSNCPPHIENFSD 179
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 387 (141.3 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 84/203 (41%), Positives = 121/203 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI RD++
Sbjct: 162 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 221
Query: 772 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 281
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVE 364
Score = 387 (141.3 bits), Expect = 2.3e-65, Sum P(3) = 2.3e-65
Identities = 84/203 (41%), Positives = 121/203 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + N+ + + I+ IE Y PTP+Q+ AIPI RD++
Sbjct: 162 DDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMAC 221
Query: 1447 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 222 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 281
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 282 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 341
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 342 LVLDEADRMLDMGFEPQIRRIVE 364
Score = 374 (136.7 bits), Expect = 2.4e-66, Sum P(2) = 2.4e-66
Identities = 87/212 (41%), Positives = 119/212 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 430
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 490 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1817
+ DL +++ + P L N H G
Sbjct: 550 ITKDLLDLLVEAKQEV-PSWLENMAYEHHYKG 580
Score = 372 (136.0 bits), Expect = 3.9e-66, Sum P(2) = 3.9e-66
Identities = 82/192 (42%), Positives = 114/192 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 430
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + +
Sbjct: 490 SPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549
Query: 1111 LFYDLKQMMISS 1122
+ DL +++ +
Sbjct: 550 ITKDLLDLLVEA 561
Score = 364 (133.2 bits), Expect = 3.4e-63, Sum P(3) = 3.4e-63
Identities = 79/172 (45%), Positives = 109/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI------QSLPKI 55
IE Y PTP+Q+ AIPI RD++ A+TGSGKT AFLLP+L I ++L +
Sbjct: 193 IELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAV 252
Query: 56 ---ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 253 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 312
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 313 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 207 (77.9 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 50/126 (39%), Positives = 70/126 (55%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + + DKR L+
Sbjct: 371 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLL 430
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++L G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 431 DILGATGSDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 489
Query: 357 KDILMA 362
IL+A
Sbjct: 490 SPILVA 495
Score = 58 (25.5 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPG 1176
TGR G GLA SF + + ++ DL +++ + P L N H G
Sbjct: 530 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEV-PSWLENMAYEHHYKG 580
Score = 41 (19.5 bits), Expect = 3.4e-63, Sum P(3) = 3.4e-63
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 371 KGVRHTMMFSATFP 384
Score = 37 (18.1 bits), Expect = 2.3e-65, Sum P(3) = 2.3e-65
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 1147 YDLKQMMISSPVSTCPPELLNHPD 1170
YD + + + S CPP + N D
Sbjct: 161 YD--DIPVEATGSNCPPHIENFSD 182
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 400 (145.9 bits), Expect = 3.0e-66, Sum P(3) = 3.0e-66
Identities = 94/205 (45%), Positives = 133/205 (64%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 768
FRE+ ++ K+P PV ++++A I+ I K G+ +P+PIQ Q P+ L +D
Sbjct: 70 FREESTV-----KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDC 124
Query: 769 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ----GPYAIIMAPTRELAQQIEEE 824
IGV++TGSGKTLAFLLP L+ I + ++A+ E D+ P+ ++++PTRELAQQIE E
Sbjct: 125 IGVSQTGSGKTLAFLLPALLHIDA--QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGE 182
Query: 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884
K+ G ++V + GG SR EQ R G EIVIATPGRL D+ + + L TY+V
Sbjct: 183 VKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVV 241
Query: 885 LDEADRMIDMGFEPDVQKIL-EYMP 908
LDEADRM+DMGFE +++IL E P
Sbjct: 242 LDEADRMLDMGFEVAIRRILFEIRP 266
Score = 400 (145.9 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 94/205 (45%), Positives = 133/205 (64%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDI 1443
FRE+ ++ K+P PV ++++A I+ I K G+ +P+PIQ Q P+ L +D
Sbjct: 70 FREESTV-----KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDC 124
Query: 1444 IGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ----GPYAIIMAPTRELAQQIEEE 1499
IGV++TGSGKTLAFLLP L+ I + ++A+ E D+ P+ ++++PTRELAQQIE E
Sbjct: 125 IGVSQTGSGKTLAFLLPALLHIDA--QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGE 182
Query: 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559
K+ G ++V + GG SR EQ R G EIVIATPGRL D+ + + L TY+V
Sbjct: 183 VKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVV 241
Query: 1560 LDEADRMIDMGFEPDVQKIL-EYMP 1583
LDEADRM+DMGFE +++IL E P
Sbjct: 242 LDEADRMLDMGFEVAIRRILFEIRP 266
Score = 375 (137.1 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 85/171 (49%), Positives = 115/171 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K G+ +P+PIQ Q P+ L +D IGV++TGSGKTLAFLLP L+ I + ++A+ E
Sbjct: 99 IRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDA--QLAQYEKN 156
Query: 62 DQ----GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 117
D+ P+ ++++PTRELAQQIE E K+ G ++V + GG SR EQ R G EI
Sbjct: 157 DEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCLYGGGSRPEQVEACRGGVEI 215
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EYMP 167
VIATPGRL D+ + + L TY+VLDEADRM+DMGFE +++IL E P
Sbjct: 216 VIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRP 266
Score = 309 (113.8 bits), Expect = 3.0e-66, Sum P(3) = 3.0e-66
Identities = 71/193 (36%), Positives = 105/193 (54%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 994
R + +AT P V +L Y + GS+ + + + Q + + ++ E+
Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEI 327
Query: 995 LN-----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
+N G +IIFV K AD L+ G N+ LHGG+ Q RE++LN L+ G
Sbjct: 328 VNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSG 387
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
ILVATD+A RGID+ D++ V+NYD IE+Y HR+GRTGRAG++G A+SF +D
Sbjct: 388 EVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDR 447
Query: 1110 HLFYDLKQMMISS 1122
F L Q++ S
Sbjct: 448 SNFEGLIQILEKS 460
Score = 309 (113.8 bits), Expect = 4.1e-65, Sum P(2) = 4.1e-65
Identities = 71/193 (36%), Positives = 105/193 (54%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 1669
R + +AT P V +L Y + GS+ + + + Q + + ++ E+
Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEI 327
Query: 1670 LN-----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
+N G +IIFV K AD L+ G N+ LHGG+ Q RE++LN L+ G
Sbjct: 328 VNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSG 387
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
ILVATD+A RGID+ D++ V+NYD IE+Y HR+GRTGRAG++G A+SF +D
Sbjct: 388 EVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDR 447
Query: 1785 HLFYDLKQMMISS 1797
F L Q++ S
Sbjct: 448 SNFEGLIQILEKS 460
Score = 135 (52.6 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 37/127 (29%), Positives = 59/127 (46%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 300
R + +AT P V +L Y + GS+ + + + Q + + ++ E+
Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEI 327
Query: 301 LN-----RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 355
+N G +IIFV K AD L+ G N+ LHGG+ Q RE++LN L+ G
Sbjct: 328 VNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSG 387
Query: 356 SKDILMA 362
IL+A
Sbjct: 388 EVQILVA 394
Score = 56 (24.8 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGRAG++G A+SF +D F L Q++ S
Sbjct: 429 TGRAGRKGEAMSFLWWNDRSNFEGLIQILEKS 460
Score = 37 (18.1 bits), Expect = 3.0e-66, Sum P(3) = 3.0e-66
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
W + S +++I+EK P ++R A
Sbjct: 444 WNDRSNFEGLIQILEKSEQEVPDQLRRDA 472
Score = 37 (18.1 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQA 758
W + S +++I+EK P ++R A
Sbjct: 444 WNDRSNFEGLIQILEKSEQEVPDQLRRDA 472
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 392 (143.0 bits), Expect = 6.6e-66, Sum P(2) = 6.6e-66
Identities = 78/202 (38%), Positives = 124/202 (61%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P +E+LA L P V G P + QIV + E K+KKL E+LN
Sbjct: 367 QTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILN 426
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ +EK+ G + ++H K Q +R+ L L G D+
Sbjct: 427 DKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDV 486
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 487 VVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 546
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
D+ + + S PP+LLN P
Sbjct: 547 DIAKR-VKPTGSLLPPQLLNSP 567
Score = 366 (133.9 bits), Expect = 8.3e-63, Sum P(2) = 8.3e-63
Identities = 71/182 (39%), Positives = 114/182 (62%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P +E+LA L P V G P + QIV + E K+KKL E+LN
Sbjct: 367 QTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILN 426
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ +EK+ G + ++H K Q +R+ L L G D+
Sbjct: 427 DKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDV 486
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 487 VVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 546
Query: 1114 DL 1115
D+
Sbjct: 547 DI 548
Score = 360 (131.8 bits), Expect = 6.6e-66, Sum P(2) = 6.6e-66
Identities = 84/218 (38%), Positives = 123/218 (56%)
Query: 694 WTEKS-LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 752
+TE + + + E R I ++G VP P+ ++ P + ++ GY PT
Sbjct: 156 YTEHAFISNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPT 215
Query: 753 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 812
PIQ Q IP+GL RD++ A+TGSGKT AFLLP+ I R + P A+++
Sbjct: 216 PIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPV---------ITRALVQSKAPSALVLT 266
Query: 813 PTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
PTRELA QIE + + G P +RT L+VGGL Q RLR +++IATPGRL+D++
Sbjct: 267 PTRELAIQIERQAKELMGGLPR-MRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIM 325
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+ + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 326 KQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVP 363
Score = 360 (131.8 bits), Expect = 6.6e-66, Sum P(2) = 6.6e-66
Identities = 84/218 (38%), Positives = 123/218 (56%)
Query: 1369 WTEKS-LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPT 1427
+TE + + + E R I ++G VP P+ ++ P + ++ GY PT
Sbjct: 156 YTEHAFISNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPT 215
Query: 1428 PIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMA 1487
PIQ Q IP+GL RD++ A+TGSGKT AFLLP+ I R + P A+++
Sbjct: 216 PIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPV---------ITRALVQSKAPSALVLT 266
Query: 1488 PTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
PTRELA QIE + + G P +RT L+VGGL Q RLR +++IATPGRL+D++
Sbjct: 267 PTRELAIQIERQAKELMGGLPR-MRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIM 325
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+ + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 326 KQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVP 363
Score = 331 (121.6 bits), Expect = 7.5e-63, Sum P(2) = 7.5e-63
Identities = 74/168 (44%), Positives = 103/168 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ GY PTPIQ Q IP+GL RD++ A+TGSGKT AFLLP+ I R
Sbjct: 206 LKTAGYEVPTPIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPV---------ITRALVQ 256
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P A+++ PTRELA QIE + + G P +RT L+VGGL Q RLR +++I
Sbjct: 257 SKAPSALVLTPTRELAIQIERQAKELMGGLPR-MRTALLVGGLPAPPQLHRLRQRVQVII 315
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ATPGRL+D+++ + L +V+DEAD M+ MGF+ V +LE +P
Sbjct: 316 ATPGRLLDIMKQSSVDLGNIKIVVVDEADTMLKMGFQEQVLDVLENVP 363
Score = 205 (77.2 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 45/123 (36%), Positives = 73/123 (59%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P +E+LA L P V G P + QIV + E K+KKL E+LN
Sbjct: 367 QTILVSATIPTRIEQLASRLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILN 426
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ +EK+ G + ++H K Q +R+ L L G D+
Sbjct: 427 DKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDV 486
Query: 360 LMA 362
+++
Sbjct: 487 VVS 489
Score = 82 (33.9 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G+ G A++F + LF+D+ + + S PP+LLN P
Sbjct: 525 GRLGQNGTAITFINNNSKRLFWDIAKR-VKPTGSLLPPQLLNSP 567
Score = 45 (20.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 726 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 776
PV + + L ++L E +EKI G ++E + I+R+ I GL D V TG
Sbjct: 434 PVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVL 493
Query: 777 GKTLAFLLPLLV 788
G+ L + LV
Sbjct: 494 GRGLDLISVKLV 505
Score = 45 (20.9 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 1401 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 1451
PV + + L ++L E +EKI G ++E + I+R+ I GL D V TG
Sbjct: 434 PVLVFVDCKLGADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVL 493
Query: 1452 GKTLAFLLPLLV 1463
G+ L + LV
Sbjct: 494 GRGLDLISVKLV 505
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 386 (140.9 bits), Expect = 9.2e-66, Sum P(2) = 9.2e-66
Identities = 83/203 (40%), Positives = 122/203 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 165 DDIPVEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 224
Query: 772 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 822
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 225 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 284
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 285 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 344
Query: 883 IVLDEADRMIDMGFEPDVQKILE 905
+VLDEADRM+DMGFEP +++I+E
Sbjct: 345 LVLDEADRMLDMGFEPQIRRIVE 367
Score = 386 (140.9 bits), Expect = 9.2e-66, Sum P(2) = 9.2e-66
Identities = 83/203 (40%), Positives = 122/203 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++
Sbjct: 165 DDIPVEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMAC 224
Query: 1447 AETGSGKTLAFLLPLLVWI------QSLPKI---ARMEDADQGPYAIIMAPTRELAQQIE 1497
A+TGSGKT AFLLP+L I ++L + R Q P ++++APTRELA QI
Sbjct: 225 AQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIY 284
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y
Sbjct: 285 EEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 344
Query: 1558 IVLDEADRMIDMGFEPDVQKILE 1580
+VLDEADRM+DMGFEP +++I+E
Sbjct: 345 LVLDEADRMLDMGFEPQIRRIVE 367
Score = 370 (135.3 bits), Expect = 9.2e-66, Sum P(2) = 9.2e-66
Identities = 89/216 (41%), Positives = 121/216 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 374 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 433
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 434 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 492
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL---AVSFCTKD 1782
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GL A SF +
Sbjct: 493 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNER 552
Query: 1783 DSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1818
+ ++ DL +++ + P L N H G+
Sbjct: 553 NINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 587
Score = 368 (134.6 bits), Expect = 4.4e-63, Sum P(3) = 4.4e-63
Identities = 79/172 (45%), Positives = 110/172 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI------QSLPKI 55
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I ++L +
Sbjct: 196 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAV 255
Query: 56 ---ARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
R Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 256 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 315
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 316 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 367
Score = 367 (134.2 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 84/195 (43%), Positives = 115/195 (58%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 374 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 433
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 434 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 492
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL---AVSFCTKD 1107
ILVAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GL A SF +
Sbjct: 493 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNER 552
Query: 1108 DSHLFYDLKQMMISS 1122
+ ++ DL +++ +
Sbjct: 553 NINITKDLLDLLVEA 567
Score = 216 (81.1 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 52/126 (41%), Positives = 71/126 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K R T+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 374 KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLL 433
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L GY ACT +HG + Q RE AL+ + G
Sbjct: 434 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRSGK 492
Query: 357 KDILMA 362
IL+A
Sbjct: 493 SPILVA 498
Score = 44 (20.5 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGT 1177
G G GLA SF + + ++ DL +++ + P L N H G+
Sbjct: 537 GNLGLIGLATSFFNERNINITKDLLDLLVEAKQEV-PSWLENMAYEHHYKGS 587
Score = 41 (19.5 bits), Expect = 4.4e-63, Sum P(3) = 4.4e-63
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 KKYRQTVMFTATMP 205
K R T+MF+AT P
Sbjct: 374 KGVRHTMMFSATFP 387
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 395 (144.1 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
Identities = 95/228 (41%), Positives = 141/228 (61%)
Query: 1372 KSLDEMTERDWRIFREDYSITIK----GGK--VPDPVRNWKEASLPTE-ILEIIEKIGYA 1424
+S +E+ + WR +E+ +I + G K +P+PV ++EA I+E I ++G+
Sbjct: 244 RSAEEV--KIWR--KENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFK 299
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+PTPIQ QA P+ L D+IG+A+TG+GKTLA+LLP + + P + R D GP +
Sbjct: 300 KPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQP-MPR--DKRNGPGML 356
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
++ PTRELA QIE E NK+ G +++ + GG R Q + G +IVIATPGRL D+
Sbjct: 357 VLTPTRELALQIEAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDL 415
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
N + L TY+VLDEADRM+DMGFEP + KI + +++PD +
Sbjct: 416 QMNELINLRSITYLVLDEADRMLDMGFEPQIMKI-----ILDIRPDRQ 458
Score = 395 (144.1 bits), Expect = 5.5e-65, Sum P(3) = 5.5e-65
Identities = 95/228 (41%), Positives = 141/228 (61%)
Query: 697 KSLDEMTERDWRIFREDYSITIK----GGK--VPDPVRNWKEASLPTE-ILEIIEKIGYA 749
+S +E+ + WR +E+ +I + G K +P+PV ++EA I+E I ++G+
Sbjct: 244 RSAEEV--KIWR--KENNNIFVDDLKDGDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFK 299
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+PTPIQ QA P+ L D+IG+A+TG+GKTLA+LLP + + P + R D GP +
Sbjct: 300 KPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQP-MPR--DKRNGPGML 356
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
++ PTRELA QIE E NK+ G +++ + GG R Q + G +IVIATPGRL D+
Sbjct: 357 VLTPTRELALQIEAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIATPGRLNDL 415
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
N + L TY+VLDEADRM+DMGFEP + KI + +++PD +
Sbjct: 416 QMNELINLRSITYLVLDEADRMLDMGFEPQIMKI-----ILDIRPDRQ 458
Score = 373 (136.4 bits), Expect = 1.6e-62, Sum P(4) = 1.6e-62
Identities = 80/175 (45%), Positives = 113/175 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +PTPIQ QA P+ L D+IG+A+TG+GKTLA+LLP + + P + R D
Sbjct: 293 IVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQP-MPR--DK 349
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA QIE E NK+ G +++ + GG R Q + G +IVIAT
Sbjct: 350 RNGPGMLVLTPTRELALQIEAECNKYSYK-GFKSICIYGGGDRNAQIKVVTSGVDIVIAT 408
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGRL D+ N + L TY+VLDEADRM+DMGFEP + KI + +++PD +
Sbjct: 409 PGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKI-----ILDIRPDRQ 458
Score = 361 (132.1 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
Identities = 80/199 (40%), Positives = 120/199 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQTVM +AT PP V RLA+SYL+ P VY+G++ ++Q V + E +K+ + +
Sbjct: 457 RQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDF 516
Query: 1670 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++R V+IFV +K AD L+ L G +LHG + Q RE AL K G I
Sbjct: 517 IHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVATD+A RG+D+ D++ V NYD +++E+Y HR+GRTGRAG+ G +V+ T++D +
Sbjct: 577 LVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAA 636
Query: 1789 DLKQMMISSPVSTCPPELL 1807
+L ++ S P EL+
Sbjct: 637 ELITILERSGQDV-PEELV 654
Score = 359 (131.4 bits), Expect = 5.5e-65, Sum P(3) = 5.5e-65
Identities = 75/175 (42%), Positives = 110/175 (62%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQTVM +AT PP V RLA+SYL+ P VY+G++ ++Q V + E +K+ + +
Sbjct: 457 RQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDF 516
Query: 995 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++R V+IFV +K AD L+ L G +LHG + Q RE AL K G I
Sbjct: 517 IHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
LVATD+A RG+D+ D++ V NYD +++E+Y HR+GRTGRAG+ G +V+ T++D
Sbjct: 577 LVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTRED 631
Score = 191 (72.3 bits), Expect = 4.0e-46, Sum P(4) = 4.0e-46
Identities = 48/123 (39%), Positives = 69/123 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQTVM +AT PP V RLA+SYL+ P VY+G++ ++Q V + E +K+ + +
Sbjct: 457 RQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDF 516
Query: 301 LNRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++R V+IFV +K AD L+ L G +LHG + Q RE AL K G I
Sbjct: 517 IHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRI 576
Query: 360 LMA 362
L+A
Sbjct: 577 LVA 579
Score = 54 (24.1 bits), Expect = 4.0e-46, Sum P(4) = 4.0e-46
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 1107 DDSHLF-YD----LKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTC 1161
D +H+F YD +++ + TGRAG+ G +V+ T++D + +L ++ S
Sbjct: 591 DITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELITILERSGQDV- 649
Query: 1162 PPELL 1166
P EL+
Sbjct: 650 PEELV 654
Score = 45 (20.9 bits), Expect = 1.6e-62, Sum P(4) = 1.6e-62
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 195 RQTVMFTATMPP 206
RQTVM +AT PP
Sbjct: 457 RQTVMTSATWPP 468
Score = 44 (20.5 bits), Expect = 5.5e-65, Sum P(3) = 5.5e-65
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGK-VPD 1400
+S+ +T DWR+ E +I + G+ VP+
Sbjct: 622 ESVTLVTREDWRVAAELITILERSGQDVPE 651
Score = 44 (20.5 bits), Expect = 4.3e-45, Sum P(4) = 4.3e-45
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGK-VPD 725
+S+ +T DWR+ E +I + G+ VP+
Sbjct: 622 ESVTLVTREDWRVAAELITILERSGQDVPE 651
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 384 (140.2 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 74/202 (36%), Positives = 125/202 (61%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ V +V+N+DM S+++Y H+IGR GR G+ G A++F + LF+
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
D+ + + S PP+LLN P
Sbjct: 559 DIAKR-VKPTGSILPPQLLNSP 579
Score = 366 (133.9 bits), Expect = 1.9e-65, Sum P(2) = 1.9e-65
Identities = 84/200 (42%), Positives = 125/200 (62%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
++ I ++G +V P+ +++ SLP + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 1503
A+TGSGKT AFLLP+++ A E + P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVIMR-------ALFES--KTPSALILTPTRELAIQIERQAKELMS 296
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G P ++TVL+VGGL Q +RL+ +++IATPGRL+D+++ + L +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEA 355
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
D M+ MGF+ V ILE +P
Sbjct: 356 DTMLKMGFQQQVLDILENIP 375
Score = 366 (133.9 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 84/200 (42%), Positives = 125/200 (62%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
++ I ++G +V P+ +++ SLP + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 828
A+TGSGKT AFLLP+++ A E + P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVIMR-------ALFES--KTPSALILTPTRELAIQIERQAKELMS 296
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G P ++TVL+VGGL Q +RL+ +++IATPGRL+D+++ + L +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEA 355
Query: 889 DRMIDMGFEPDVQKILEYMP 908
D M+ MGF+ V ILE +P
Sbjct: 356 DTMLKMGFQQQVLDILENIP 375
Score = 358 (131.1 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 67/182 (36%), Positives = 115/182 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ V +V+N+DM S+++Y H+IGR GR G+ G A++F + LF+
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558
Query: 1114 DL 1115
D+
Sbjct: 559 DI 560
Score = 332 (121.9 bits), Expect = 6.7e-58, Sum P(3) = 6.7e-58
Identities = 77/168 (45%), Positives = 108/168 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY PTPIQ Q IP+GL RDI+ A+TGSGKT AFLLP+++ A E
Sbjct: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR-------ALFES- 269
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P A+I+ PTRELA QIE + + G P ++TVL+VGGL Q +RL+ +++I
Sbjct: 270 -KTPSALILTPTRELAIQIERQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLQQHVKVII 327
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ATPGRL+D+++ + L +V+DEAD M+ MGF+ V ILE +P
Sbjct: 328 ATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIP 375
Score = 197 (74.4 bits), Expect = 6.9e-45, Sum P(4) = 6.9e-45
Identities = 40/123 (32%), Positives = 74/123 (60%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 360 LMA 362
+++
Sbjct: 499 VVS 501
Score = 82 (33.9 bits), Expect = 6.9e-45, Sum P(4) = 6.9e-45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G+ G A++F + LF+D+ + + S PP+LLN P
Sbjct: 537 GRLGQNGTAITFINNNSKRLFWDIAKR-VKPTGSILPPQLLNSP 579
Score = 41 (19.5 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEA-----DRMIDMGFEPDVQKIL--EYMPVTNLKPD-- 1590
+++D+LEN + N C I++ +++ V+ I + +P N++
Sbjct: 366 QVLDILEN---IPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIIL 422
Query: 1591 -TEDAEDENKLLANYNSKKKYRQTVM 1615
ED + KL N KK ++ V+
Sbjct: 423 WVEDPAKKKKLFEILNDKKLFKPPVL 448
Score = 41 (19.5 bits), Expect = 8.0e-29, Sum P(4) = 8.0e-29
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 865 RLIDVLENRYLVLNQCTYIVLDEA-----DRMIDMGFEPDVQKIL--EYMPVTNLKPD-- 915
+++D+LEN + N C I++ +++ V+ I + +P N++
Sbjct: 366 QVLDILEN---IPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIIL 422
Query: 916 -TEDAEDENKLLANYNSKKKYRQTVM 940
ED + KL N KK ++ V+
Sbjct: 423 WVEDPAKKKKLFEILNDKKLFKPPVL 448
Score = 40 (19.1 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1401 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 1451
PV + + L ++L E ++KI G ++E + I+R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
Query: 1452 GKTLAFLLPLLV 1463
G+ L + LV
Sbjct: 506 GRGLDLISVRLV 517
Score = 40 (19.1 bits), Expect = 1.0e-28, Sum P(4) = 1.0e-28
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 726 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 776
PV + + L ++L E ++KI G ++E + I+R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
Query: 777 GKTLAFLLPLLV 788
G+ L + LV
Sbjct: 506 GRGLDLISVRLV 517
Score = 37 (18.1 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1245 DPEEKELNKDKEREGEAI 1262
D + KE KDK+ + + +
Sbjct: 583 DQKRKEQQKDKQTQNDLV 600
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 350 (128.3 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 77/192 (40%), Positives = 112/192 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT++F+ATMP + LA+ L P TV +G+V P + +Y + + K L+E+L
Sbjct: 176 RQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVA-PAVTVAHALYPVEQHLKTPLLLELL 234
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V+IF K A L + LEK GY A +L G Q +R+ AL+ + G+ ILV
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATD+A RGID+ VS VINYD+ + E Y HRIGRTGRA + G A + T DD + +
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAI 354
Query: 1116 KQMMISSPVTGR 1127
++ + +P+ R
Sbjct: 355 ERSL-GAPIERR 365
Score = 348 (127.6 bits), Expect = 4.0e-65, Sum P(3) = 4.0e-65
Identities = 76/189 (40%), Positives = 111/189 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT++F+ATMP + LA+ L P TV +G+V P + +Y + + K L+E+L
Sbjct: 176 RQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVA-PAVTVAHALYPVEQHLKTPLLLELL 234
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V+IF K A L + LEK GY A +L G Q +R+ AL+ + G+ ILV
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATD+A RGID+ VS VINYD+ + E Y HRIGRTGRA + G A + T DD + +
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAI 354
Query: 1791 KQMMISSPV 1799
++ + +P+
Sbjct: 355 ERSL-GAPI 362
Score = 342 (125.4 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 71/167 (42%), Positives = 108/167 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I GY PTPIQ QAIP + RD++G+A+TG+GKT AF LP+L R++
Sbjct: 16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL---------HRLQQG 66
Query: 62 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
++G A+++APTRELA+QI + G +R+V V GG+ Q +L+ G E+V+A
Sbjct: 67 ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVA 126
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D + + L++ +VLDEAD+M DMGF PD++++L+++P
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLP 173
Score = 342 (125.4 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 71/167 (42%), Positives = 108/167 (64%)
Query: 743 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802
I GY PTPIQ QAIP + RD++G+A+TG+GKT AF LP+L R++
Sbjct: 16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL---------HRLQQG 66
Query: 803 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861
++G A+++APTRELA+QI + G +R+V V GG+ Q +L+ G E+V+A
Sbjct: 67 ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVA 126
Query: 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
PGRL+D + + L++ +VLDEAD+M DMGF PD++++L+++P
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLP 173
Score = 342 (125.4 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 71/167 (42%), Positives = 108/167 (64%)
Query: 1418 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477
I GY PTPIQ QAIP + RD++G+A+TG+GKT AF LP+L R++
Sbjct: 16 IAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL---------HRLQQG 66
Query: 1478 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536
++G A+++APTRELA+QI + G +R+V V GG+ Q +L+ G E+V+A
Sbjct: 67 ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVA 126
Query: 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
PGRL+D + + L++ +VLDEAD+M DMGF PD++++L+++P
Sbjct: 127 CPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLP 173
Score = 188 (71.2 bits), Expect = 6.4e-51, Sum P(4) = 6.4e-51
Identities = 44/121 (36%), Positives = 67/121 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+ATMP + LA+ L P TV +G+V P + +Y + + K L+E+L
Sbjct: 176 RQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVA-PAVTVAHALYPVEQHLKTPLLLELL 234
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V+IF K A L + LEK GY A +L G Q +R+ AL+ + G+ IL+
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILV 294
Query: 362 A 362
A
Sbjct: 295 A 295
Score = 46 (21.3 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 195 RQTVMFTATMP 205
RQT++F+ATMP
Sbjct: 176 RQTLLFSATMP 186
Score = 46 (21.3 bits), Expect = 6.4e-51, Sum P(4) = 6.4e-51
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1158
TGRA + G A + T DD + +++ + +P+
Sbjct: 330 TGRAARSGDAFTLVTSDDGAMVRAIERSL-GAPI 362
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 392 (143.0 bits), Expect = 2.9e-65, Sum P(2) = 2.9e-65
Identities = 93/220 (42%), Positives = 127/220 (57%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 421 KGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 480
Query: 1668 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1725
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 481 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 539
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
I+VAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF +S+
Sbjct: 540 CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSN 599
Query: 1786 LFYDLKQMMISSPVSTCPPELLNHP-DAQHKPGTVMVPKK 1824
+ DL +++ + P L N + QHK PK+
Sbjct: 600 ITKDLLDILVEAKQEV-PSWLENLAYEHQHKSTNRGRPKR 638
Score = 388 (141.6 bits), Expect = 8.2e-65, Sum P(2) = 8.2e-65
Identities = 88/204 (43%), Positives = 121/204 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 421 KGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 480
Query: 993 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 1050
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 481 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 539
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
I+VAT VA RG+DI +V VIN+D+ IE+Y HRIGRTGR G GLA SF +S+
Sbjct: 540 CPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSN 599
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLA 1134
+ DL +++ + + E LA
Sbjct: 600 ITKDLLDILVEAKQEVPSWLENLA 623
Score = 361 (132.1 bits), Expect = 2.9e-65, Sum P(2) = 2.9e-65
Identities = 81/208 (38%), Positives = 120/208 (57%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G P + ++ + + I+ I Y PTP+Q+ AIPI RD++
Sbjct: 207 DDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMAC 266
Query: 772 AETGSGKTLAFLLPLLVWIQS--------LPKIARMED------ADQGPYAIIMAPTREL 817
A+TGSGKT AFLLP+L I S K + ++ Q P ++++APTREL
Sbjct: 267 AQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTREL 326
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 877
A QI +E KF +R +V GG +Q L GC +++ATPGRL+D++E + L
Sbjct: 327 ALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 386
Query: 878 NQCTYIVLDEADRMIDMGFEPDVQKILE 905
+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 387 DYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 361 (132.1 bits), Expect = 2.9e-65, Sum P(2) = 2.9e-65
Identities = 81/208 (38%), Positives = 120/208 (57%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G P + ++ + + I+ I Y PTP+Q+ AIPI RD++
Sbjct: 207 DDIPVEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMAC 266
Query: 1447 AETGSGKTLAFLLPLLVWIQS--------LPKIARMED------ADQGPYAIIMAPTREL 1492
A+TGSGKT AFLLP+L I S K + ++ Q P ++++APTREL
Sbjct: 267 AQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTREL 326
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVL 1552
A QI +E KF +R +V GG +Q L GC +++ATPGRL+D++E + L
Sbjct: 327 ALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 386
Query: 1553 NQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 387 DYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 349 (127.9 bits), Expect = 9.1e-64, Sum P(3) = 9.1e-64
Identities = 76/172 (44%), Positives = 107/172 (62%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS--------LPKIARM 58
Y PTP+Q+ AIPI RD++ A+TGSGKT AFLLP+L I S K +
Sbjct: 243 YTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQ 302
Query: 59 ED------ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
++ Q P ++++APTRELA QI +E KF +R +V GG +Q L
Sbjct: 303 QENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLE 362
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E
Sbjct: 363 RGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 219 (82.2 bits), Expect = 6.4e-47, Sum P(3) = 6.4e-47
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
K RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + E DKR L+
Sbjct: 421 KGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLL 480
Query: 299 EVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGS 356
++LN G ++FV KKGAD L L + GY ACT +HG + Q RE AL+ + G
Sbjct: 481 DLLNATGKDSLTLVFVETKKGADALEDFLYREGY-ACTSIHGDRSQRDREEALHQFRSGR 539
Query: 357 KDILMA 362
I++A
Sbjct: 540 CPIMVA 545
Score = 61 (26.5 bits), Expect = 6.4e-47, Sum P(3) = 6.4e-47
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP-DAQHK 1174
TGR G GLA SF +S++ DL +++ + P L N + QHK
Sbjct: 580 TGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEV-PSWLENLAYEHQHK 629
Score = 45 (20.9 bits), Expect = 9.1e-64, Sum P(3) = 9.1e-64
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 192 KKYRQTVMFTATMP 205
K RQT+MF+AT P
Sbjct: 421 KGSRQTMMFSATFP 434
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 370 (135.3 bits), Expect = 4.4e-65, Sum P(2) = 4.4e-65
Identities = 82/222 (36%), Positives = 127/222 (57%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K RQT++F+ATMP +E LA + L P + I + + + Q VY L + +K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFN 238
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+L + + V+IF K GAD++ K LEK A +LH GK Q RE AL + K + +
Sbjct: 239 ILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVATDVA RGID+ ++++VINY++ + +Y HRIGRT RAGK G+A+SF ++D
Sbjct: 299 LVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVEND----- 353
Query: 1789 DLKQMM-ISSPVSTCPPELLNHPDAQHKPGTVMVPKKRREEK 1829
++Q+ I + + P + P + + KK+++ K
Sbjct: 354 -IRQLTNIENSIGQVIPVVTEQPFHKEFSKAPIQDKKKKQVK 394
Score = 369 (135.0 bits), Expect = 5.7e-65, Sum P(2) = 5.7e-65
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K RQT++F+ATMP +E LA + L P + I + + + Q VY L + +K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFN 238
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+L + + V+IF K GAD++ K LEK A +LH GK Q RE AL + K + +
Sbjct: 239 ILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
LVATDVA RGID+ ++++VINY++ + +Y HRIGRT RAGK G+A+SF ++D
Sbjct: 299 LVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVEND 353
Score = 339 (124.4 bits), Expect = 4.4e-65, Sum P(2) = 4.4e-65
Identities = 70/179 (39%), Positives = 111/179 (62%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+K SL I++ + GY +PTPIQ++ IP + D++G+A+TG+GKT AF LP+
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI--- 60
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I + +++ + ++I+ PTRELA QI + + + LG++T +V GG+ R+ Q
Sbjct: 61 INKFGR-NKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQV 119
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+ LG +I++ATPGRL+D++E + VLDEAD M+DMGF DVQ I+ +P
Sbjct: 120 DSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178
Score = 339 (124.4 bits), Expect = 4.4e-65, Sum P(2) = 4.4e-65
Identities = 70/179 (39%), Positives = 111/179 (62%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+K SL I++ + GY +PTPIQ++ IP + D++G+A+TG+GKT AF LP+
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI--- 60
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I + +++ + ++I+ PTRELA QI + + + LG++T +V GG+ R+ Q
Sbjct: 61 INKFGR-NKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQV 119
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+ LG +I++ATPGRL+D++E + VLDEAD M+DMGF DVQ I+ +P
Sbjct: 120 DSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLP 178
Score = 332 (121.9 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 90/256 (35%), Positives = 139/256 (54%)
Query: 1 IIEKI---GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 57
II+++ GY +PTPIQ++ IP + D++G+A+TG+GKT AF LP+ I + +
Sbjct: 13 IIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI---INKFGR-NK 68
Query: 58 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 117
++ + ++I+ PTRELA QI + + + LG++T +V GG+ R+ Q + LG +I
Sbjct: 69 IDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDI 128
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV---TNLKPD 174
++ATPGRL+D++E + VLDEAD M+DMGF DVQ I+ +P T L
Sbjct: 129 LVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSA 188
Query: 175 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLAN 234
T AE E A K + T T T+ L V +L D ++ LL N
Sbjct: 189 TMPAEIEILAEAILTDPTKIQITAE-TVTID----LVNQSVYHL-----DKSNKVPLLFN 238
Query: 235 YNSKKKYRQTVMFTAT 250
+K Y + ++F T
Sbjct: 239 ILTKADYEKVLIFCKT 254
Score = 203 (76.5 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 46/123 (37%), Positives = 68/123 (55%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K RQT++F+ATMP +E LA + L P + I + + + Q VY L + +K L
Sbjct: 179 KSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFN 238
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+L + + V+IF K GAD++ K LEK A +LH GK Q RE AL + K + +
Sbjct: 239 ILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRV 298
Query: 360 LMA 362
L+A
Sbjct: 299 LVA 301
Score = 58 (25.5 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
T RAGK G+A+SF ++D
Sbjct: 336 TARAGKSGMAISFAVEND 353
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 388 (141.6 bits), Expect = 4.8e-65, Sum P(2) = 4.8e-65
Identities = 74/202 (36%), Positives = 125/202 (61%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
D+ + + S PP+LLN P
Sbjct: 560 DIAKR-VKPTGSILPPQLLNSP 580
Score = 362 (132.5 bits), Expect = 4.7e-61, Sum P(3) = 4.7e-61
Identities = 67/182 (36%), Positives = 115/182 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ V +V+N+DM S+++Y H++GR GR G+ G A++F + LF+
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559
Query: 1114 DL 1115
D+
Sbjct: 560 DI 561
Score = 358 (131.1 bits), Expect = 4.8e-65, Sum P(2) = 4.8e-65
Identities = 81/200 (40%), Positives = 119/200 (59%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
+ I ++G V P+ +++ P + ++ GY PTPIQ Q IP+GL RD++
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 828
A+TGSGKT AFLLP+ I R + P A+I+ PTRELA QIE + +
Sbjct: 247 SADTGSGKTAAFLLPV---------ITRALCESKTPSALILTPTRELAIQIENQAKELMS 297
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L +V+DEA
Sbjct: 298 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEA 356
Query: 889 DRMIDMGFEPDVQKILEYMP 908
D M+ MGF+ V ILE++P
Sbjct: 357 DTMLKMGFQQQVLDILEHVP 376
Score = 358 (131.1 bits), Expect = 4.8e-65, Sum P(2) = 4.8e-65
Identities = 81/200 (40%), Positives = 119/200 (59%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
+ I ++G V P+ +++ P + ++ GY PTPIQ Q IP+GL RD++
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 1503
A+TGSGKT AFLLP+ I R + P A+I+ PTRELA QIE + +
Sbjct: 247 SADTGSGKTAAFLLPV---------ITRALCESKTPSALILTPTRELAIQIENQAKELMS 297
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L +V+DEA
Sbjct: 298 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEA 356
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
D M+ MGF+ V ILE++P
Sbjct: 357 DTMLKMGFQQQVLDILEHVP 376
Score = 334 (122.6 bits), Expect = 1.5e-58, Sum P(3) = 1.5e-58
Identities = 76/164 (46%), Positives = 104/164 (63%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY PTPIQ Q IP+GL RD++ A+TGSGKT AFLLP+ I R + P
Sbjct: 223 GYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV---------ITRALCESKTP 273
Query: 66 YAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
A+I+ PTRELA QIE + + G P ++TVL+VGGL Q +RLR +++IATPG
Sbjct: 274 SALILTPTRELAIQIENQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 332
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
RL+D+++ + L +V+DEAD M+ MGF+ V ILE++P
Sbjct: 333 RLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVP 376
Score = 202 (76.2 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 41/123 (33%), Positives = 74/123 (60%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 360 LMA 362
+++
Sbjct: 500 VVS 502
Score = 82 (33.9 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G+ G A++F + LF+D+ + + S PP+LLN P
Sbjct: 538 GRLGQNGTAITFINNNSKRLFWDIAKR-VKPTGSILPPQLLNSP 580
Score = 37 (18.1 bits), Expect = 4.7e-61, Sum P(3) = 4.7e-61
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1245 DPEEKELNKDKEREGEAI 1262
D + KE KDK+ + + +
Sbjct: 584 DQKRKEQQKDKQTQNDLV 601
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 376 (137.4 bits), Expect = 7.6e-65, Sum P(2) = 7.6e-65
Identities = 84/213 (39%), Positives = 126/213 (59%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
+ E+TE + + I G +V PV ++ PT + ++ GY PTP+Q Q
Sbjct: 141 ISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQM 200
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTREL 1492
+P+GL RD+I A+TGSGKT+AFLLP+++ + + E A P +I+ PTREL
Sbjct: 201 VPVGLTGRDVIATADTGSGKTVAFLLPVVM------RALQSESASPSCPACLILTPTREL 254
Query: 1493 AQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 1550
A QIEE+ + G P +RT L+VGG+ Q RL+ +IVI TPGRL+++L+ + +
Sbjct: 255 AIQIEEQAKELMRGLP-NMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEILKQKAV 313
Query: 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L+ +V+DEAD M+ MGF+ V ILE +P
Sbjct: 314 QLDHVRTVVVDEADTMLKMGFQQQVLDILEQVP 346
Score = 376 (137.4 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 84/213 (39%), Positives = 126/213 (59%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
+ E+TE + + I G +V PV ++ PT + ++ GY PTP+Q Q
Sbjct: 141 ISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQM 200
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-PYAIIMAPTREL 817
+P+GL RD+I A+TGSGKT+AFLLP+++ + + E A P +I+ PTREL
Sbjct: 201 VPVGLTGRDVIATADTGSGKTVAFLLPVVM------RALQSESASPSCPACLILTPTREL 254
Query: 818 AQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 875
A QIEE+ + G P +RT L+VGG+ Q RL+ +IVI TPGRL+++L+ + +
Sbjct: 255 AIQIEEQAKELMRGLP-NMRTALLVGGMPLPPQLHRLKHNIKIVIGTPGRLLEILKQKAV 313
Query: 876 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L+ +V+DEAD M+ MGF+ V ILE +P
Sbjct: 314 QLDHVRTVVVDEADTMLKMGFQQQVLDILEQVP 346
Score = 366 (133.9 bits), Expect = 7.6e-65, Sum P(2) = 7.6e-65
Identities = 71/202 (35%), Positives = 121/202 (59%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++LA P T+ IG +P + QIV + E K+KKL E+LN
Sbjct: 350 QTLLTSATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILN 409
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ + PV++FV+ K GAD+L + ++K + N +H K Q +R + L G D+
Sbjct: 410 DEKLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDV 469
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+++T + GRG+D+ +V +VIN+DM ++++Y H+IGR GR G G A++F ++ LF
Sbjct: 470 VISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFL 529
Query: 1789 DLKQMMISSPVSTCPPELLNHP 1810
++ + + S PP++LN P
Sbjct: 530 EMVKR-VKPTGSILPPQILNSP 550
Score = 343 (125.8 bits), Expect = 8.0e-62, Sum P(3) = 8.0e-62
Identities = 65/182 (35%), Positives = 111/182 (60%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++LA P T+ IG +P + QIV + E K+KKL E+LN
Sbjct: 350 QTLLTSATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILN 409
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ + PV++FV+ K GAD+L + ++K + N +H K Q +R + L G D+
Sbjct: 410 DEKLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDV 469
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+++T + GRG+D+ +V +VIN+DM ++++Y H+IGR GR G G A++F ++ LF
Sbjct: 470 VISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFL 529
Query: 1114 DL 1115
++
Sbjct: 530 EM 531
Score = 343 (125.8 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 74/169 (43%), Positives = 108/169 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ GY PTP+Q Q +P+GL RD+I A+TGSGKT+AFLLP+++ + + E A
Sbjct: 185 LKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVM------RALQSESA 238
Query: 62 DQG-PYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 118
P +I+ PTRELA QIEE+ + G P +RT L+VGG+ Q RL+ +IV
Sbjct: 239 SPSCPACLILTPTRELAIQIEEQAKELMRGLP-NMRTALLVGGMPLPPQLHRLKHNIKIV 297
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
I TPGRL+++L+ + + L+ +V+DEAD M+ MGF+ V ILE +P
Sbjct: 298 IGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVP 346
Score = 191 (72.3 bits), Expect = 5.6e-45, Sum P(4) = 5.6e-45
Identities = 41/123 (33%), Positives = 70/123 (56%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++LA P T+ IG +P + QIV + E K+KKL E+LN
Sbjct: 350 QTLLTSATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILN 409
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEK-LGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ + PV++FV+ K GAD+L + ++K + N +H K Q +R + L G D+
Sbjct: 410 DEKLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDV 469
Query: 360 LMA 362
+++
Sbjct: 470 VIS 472
Score = 71 (30.1 bits), Expect = 5.6e-45, Sum P(4) = 5.6e-45
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1169
GR G G A++F ++ LF ++ + + S PP++LN P
Sbjct: 508 GRLGHRGTAITFMNNNNKRLFLEMVKR-VKPTGSILPPQILNSP 550
Score = 40 (19.1 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQ 1439
++L+I+E++ T + IP G Q
Sbjct: 337 QVLDILEQVPEDHQTLLTSATIPTGTQ 363
Score = 40 (19.1 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQ 764
++L+I+E++ T + IP G Q
Sbjct: 337 QVLDILEQVPEDHQTLLTSATIPTGTQ 363
Score = 38 (18.4 bits), Expect = 8.0e-62, Sum P(3) = 8.0e-62
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 1645 KPTERIEQIVYILSEQDKR 1663
K T+ I++++ + DKR
Sbjct: 562 KNTQHTHSILHLIQQHDKR 580
Score = 38 (18.4 bits), Expect = 7.7e-42, Sum P(3) = 7.7e-42
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 970 KPTERIEQIVYILSEQDKR 988
K T+ I++++ + DKR
Sbjct: 562 KNTQHTHSILHLIQQHDKR 580
Score = 38 (18.4 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 276 KPTERIEQIVYILSEQDKR 294
K T+ I++++ + DKR
Sbjct: 562 KNTQHTHSILHLIQQHDKR 580
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 373 (136.4 bits), Expect = 9.7e-65, Sum P(2) = 9.7e-65
Identities = 90/206 (43%), Positives = 132/206 (64%)
Query: 1382 WRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQA 1433
WR +E+ +I +K G+ +P+PV +++ P +I+ I K G+ +PTPIQ QA
Sbjct: 214 WR--KENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYP-DIMANIRKTGFQKPTPIQSQA 270
Query: 1434 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 1493
PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D GP +++APTRELA
Sbjct: 271 WPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DKRGGPGMLVLAPTRELA 327
Query: 1494 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 1553
Q+E E K+ T G +++ + GG R+ Q + G +IVIATPGRL D+ N ++ L
Sbjct: 328 LQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLK 386
Query: 1554 QCTYIVLDEADRMIDMGFEPDVQKIL 1579
TY+ +EADRM+DMGFEP + KIL
Sbjct: 387 SITYLA-NEADRMLDMGFEPQIMKIL 411
Score = 373 (136.4 bits), Expect = 9.7e-65, Sum P(2) = 9.7e-65
Identities = 87/210 (41%), Positives = 125/210 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLME- 1668
RQTVM +AT P V RLA+SYLR P VY+G++ +EQ V +++E++K K ME
Sbjct: 418 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEK-KAFMEN 476
Query: 1669 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
+ + K IIFV +K AD +A L G +LHG + Q RE AL+ K G
Sbjct: 477 FIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVR 536
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
ILVATD+A RG+D+ D++ V N+D ++IE+Y HR+GRTGRAG+ G AV+ TK D
Sbjct: 537 ILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAA 596
Query: 1788 YDLKQMMISSPVSTCPPELLNHPDA--QHK 1815
+L ++ + P EL++ + QH+
Sbjct: 597 SELIDILQRAK-QVVPDELISMAERYKQHQ 625
Score = 373 (136.4 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 90/206 (43%), Positives = 132/206 (64%)
Query: 707 WRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAEPTPIQRQA 758
WR +E+ +I +K G+ +P+PV +++ P +I+ I K G+ +PTPIQ QA
Sbjct: 214 WR--KENNNIICDDLKEGEKRCIPNPVCKFEDVFEQYP-DIMANIRKTGFQKPTPIQSQA 270
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D GP +++APTRELA
Sbjct: 271 WPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DKRGGPGMLVLAPTRELA 327
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
Q+E E K+ T G +++ + GG R+ Q + G +IVIATPGRL D+ N ++ L
Sbjct: 328 LQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLK 386
Query: 879 QCTYIVLDEADRMIDMGFEPDVQKIL 904
TY+ +EADRM+DMGFEP + KIL
Sbjct: 387 SITYLA-NEADRMLDMGFEPQIMKIL 411
Score = 371 (135.7 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 81/176 (46%), Positives = 111/176 (63%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLME- 993
RQTVM +AT P V RLA+SYLR P VY+G++ +EQ V +++E++K K ME
Sbjct: 418 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEK-KAFMEN 476
Query: 994 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
+ + K IIFV +K AD +A L G +LHG + Q RE AL+ K G
Sbjct: 477 FIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVR 536
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
ILVATD+A RG+D+ D++ V N+D ++IE+Y HR+GRTGRAG+ G AV+ TK D
Sbjct: 537 ILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKD 592
Score = 359 (131.4 bits), Expect = 1.3e-62, Sum P(4) = 1.3e-62
Identities = 79/162 (48%), Positives = 109/162 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K G+ +PTPIQ QA PI LQ D+IG+A+TG+GKTLA+L+P + + S P I + D
Sbjct: 255 IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQP-IPK--DK 311
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++APTRELA Q+E E K+ T G +++ + GG R+ Q + G +IVIAT
Sbjct: 312 RGGPGMLVLAPTRELALQVEAECLKY-TYKGFKSICIYGGGDRKAQINVVTKGVDIVIAT 370
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N ++ L TY+ +EADRM+DMGFEP + KIL
Sbjct: 371 PGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKIL 411
Score = 203 (76.5 bits), Expect = 5.6e-45, Sum P(4) = 5.6e-45
Identities = 52/124 (41%), Positives = 71/124 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLME- 299
RQTVM +AT P V RLA+SYLR P VY+G++ +EQ V +++E++K K ME
Sbjct: 418 RQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEK-KAFMEN 476
Query: 300 -VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
+ + K IIFV +K AD +A L G +LHG + Q RE AL+ K G
Sbjct: 477 FIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVR 536
Query: 359 ILMA 362
IL+A
Sbjct: 537 ILVA 540
Score = 57 (25.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 31/131 (23%), Positives = 61/131 (46%)
Query: 1055 VATDVAGRGIDIKDVSMVINY-DMAKSIEDYTH---RIGRTGRAGKEGLAVSFCTKDDSH 1110
+A+D+ +G+ ++ + D ++++D+ RI GL V D +H
Sbjct: 500 IASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVH----DITH 555
Query: 1111 LF-YD----LKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
+F +D +++ + TGRAG+ G AV+ TK D +L ++ + P EL
Sbjct: 556 VFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDILQRAK-QVVPDEL 614
Query: 1166 LNHPDA--QHK 1174
++ + QH+
Sbjct: 615 ISMAERYKQHQ 625
Score = 45 (20.9 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEK 1420
T K++ +T++DW+ E I + +V PD + + E +I + +EK
Sbjct: 581 TGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERYKQHQIRKEMEK 632
Score = 45 (20.9 bits), Expect = 5.6e-45, Sum P(4) = 5.6e-45
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 695 TEKSLDEMTERDWRIFREDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEK 745
T K++ +T++DW+ E I + +V PD + + E +I + +EK
Sbjct: 581 TGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERYKQHQIRKEMEK 632
Score = 40 (19.1 bits), Expect = 1.3e-62, Sum P(4) = 1.3e-62
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQTVM +AT P
Sbjct: 418 RQTVMMSATWP 428
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 413 (150.4 bits), Expect = 2.2e-64, Sum P(2) = 2.2e-64
Identities = 85/197 (43%), Positives = 119/197 (60%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
R ++ + G P P ++ +++ I K Y +PTPIQ Q +PI L RD IG
Sbjct: 240 RRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIG 299
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 1505
+A+TGSGKT AF+ P+LV I ++ + +GP A+I+ PTREL QQI E +FG
Sbjct: 300 IAKTGSGKTAAFIWPILVHIMDQKEL----EPGEGPIAVIVCPTRELCQQIHAECKRFGK 355
Query: 1506 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 1565
G+R+V V GG S EQ L+ G EIV+ TPGRLID ++ + L + T++V DEADR
Sbjct: 356 AYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADR 415
Query: 1566 MIDMGFEPDVQKILEYM 1582
M DMGFE V+ I ++
Sbjct: 416 MFDMGFEYQVRSIASHV 432
Score = 413 (150.4 bits), Expect = 3.1e-63, Sum P(3) = 3.1e-63
Identities = 85/197 (43%), Positives = 119/197 (60%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
R ++ + G P P ++ +++ I K Y +PTPIQ Q +PI L RD IG
Sbjct: 240 RRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIG 299
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT 830
+A+TGSGKT AF+ P+LV I ++ + +GP A+I+ PTREL QQI E +FG
Sbjct: 300 IAKTGSGKTAAFIWPILVHIMDQKEL----EPGEGPIAVIVCPTRELCQQIHAECKRFGK 355
Query: 831 PLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADR 890
G+R+V V GG S EQ L+ G EIV+ TPGRLID ++ + L + T++V DEADR
Sbjct: 356 AYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADR 415
Query: 891 MIDMGFEPDVQKILEYM 907
M DMGFE V+ I ++
Sbjct: 416 MFDMGFEYQVRSIASHV 432
Score = 390 (142.3 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 81/165 (49%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +PI L RD IG+A+TGSGKT AF+ P+LV I ++ +
Sbjct: 272 IRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKEL----EP 327
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+I+ PTREL QQI E +FG G+R+V V GG S EQ L+ G EIV+ T
Sbjct: 328 GEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCT 387
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + T++V DEADRM DMGFE V+ I ++
Sbjct: 388 PGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHV 432
Score = 337 (123.7 bits), Expect = 2.2e-64, Sum P(2) = 2.2e-64
Identities = 77/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDK----RKK 1665
RQT++F+AT +E+LAR L P V G +G+ E I QIV +L S QDK ++
Sbjct: 436 RQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRR 495
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K + LA L + GY+ LHG Q +R + K +
Sbjct: 496 LVEFTSAG---SVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKN 552
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + V+NYD+A+ I+ +THRIGRTGRAG++G+A + T D+
Sbjct: 553 LPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTS 612
Query: 1786 LFYDL 1790
DL
Sbjct: 613 FAGDL 617
Score = 337 (123.7 bits), Expect = 3.1e-63, Sum P(3) = 3.1e-63
Identities = 77/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDK----RKK 990
RQT++F+AT +E+LAR L P V G +G+ E I QIV +L S QDK ++
Sbjct: 436 RQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRR 495
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K + LA L + GY+ LHG Q +R + K +
Sbjct: 496 LVEFTSAG---SVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKN 552
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + V+NYD+A+ I+ +THRIGRTGRAG++G+A + T D+
Sbjct: 553 LPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTS 612
Query: 1111 LFYDL 1115
DL
Sbjct: 613 FAGDL 617
Score = 167 (63.8 bits), Expect = 1.3e-43, Sum P(4) = 1.3e-43
Identities = 45/126 (35%), Positives = 68/126 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDK----RKK 296
RQT++F+AT +E+LAR L P V G +G+ E I QIV +L S QDK ++
Sbjct: 436 RQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRR 495
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K + LA L + GY+ LHG Q +R + K +
Sbjct: 496 LVEFTSAG---SVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKN 552
Query: 357 KDILMA 362
+L+A
Sbjct: 553 LPVLVA 558
Score = 52 (23.4 bits), Expect = 1.3e-43, Sum P(4) = 1.3e-43
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T D+ DL
Sbjct: 593 TGRAGEKGVAYTLLTTKDTSFAGDL 617
Score = 41 (19.5 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 25/126 (19%), Positives = 49/126 (38%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTATMP-----PAVERLARSYLRRPATVYIGSVGKPT 1647
D + NK++A++ KKK ++ T P++ + + R + +G+
Sbjct: 537 DQSERNKVIADF--KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTG 594
Query: 1648 ERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
E+ + Y L K L R ++ NQ D+L ++ +
Sbjct: 595 RAGEKGVAYTLLTT-KDTSFAGDLVRNLEG-----ANQSVSKDLLDLAMQNPWFRKSRFK 648
Query: 1707 GGKGQE 1712
GGKG++
Sbjct: 649 GGKGKK 654
Score = 41 (19.5 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
Identities = 25/126 (19%), Positives = 49/126 (38%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTATMP-----PAVERLARSYLRRPATVYIGSVGKPT 972
D + NK++A++ KKK ++ T P++ + + R + +G+
Sbjct: 537 DQSERNKVIADF--KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTG 594
Query: 973 ERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
E+ + Y L K L R ++ NQ D+L ++ +
Sbjct: 595 RAGEKGVAYTLLTT-KDTSFAGDLVRNLEG-----ANQSVSKDLLDLAMQNPWFRKSRFK 648
Query: 1032 GGKGQE 1037
GGKG++
Sbjct: 649 GGKGKK 654
Score = 41 (19.5 bits), Expect = 7.8e-30, Sum P(3) = 7.8e-30
Identities = 25/126 (19%), Positives = 49/126 (38%)
Query: 224 DAEDENKLLANYNSKKKYRQTVMFTATMP-----PAVERLARSYLRRPATVYIGSVGKPT 278
D + NK++A++ KKK ++ T P++ + + R + +G+
Sbjct: 537 DQSERNKVIADF--KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTG 594
Query: 279 ERIEQ-IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
E+ + Y L K L R ++ NQ D+L ++ +
Sbjct: 595 RAGEKGVAYTLLTT-KDTSFAGDLVRNLEG-----ANQSVSKDLLDLAMQNPWFRKSRFK 648
Query: 338 GGKGQE 343
GGKG++
Sbjct: 649 GGKGKK 654
Score = 39 (18.8 bits), Expect = 3.1e-63, Sum P(3) = 3.1e-63
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 1248 EKELNKDKEREGE 1260
E+E ++D++R GE
Sbjct: 841 ERERDRDRDRHGE 853
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 404 (147.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 404 (147.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 4.4e-62, Sum P(2) = 4.4e-62
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 346 (126.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 77/184 (41%), Positives = 111/184 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK----RKKL 991
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL K ++L
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRL 491
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 VEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 548
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 608
Query: 1112 FYDL 1115
DL
Sbjct: 609 AGDL 612
Score = 346 (126.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 77/184 (41%), Positives = 111/184 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK----RKKL 1666
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL K ++L
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRL 491
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 VEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDI 548
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 PVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNF 608
Query: 1787 FYDL 1790
DL
Sbjct: 609 AGDL 612
Score = 169 (64.5 bits), Expect = 3.1e-44, Sum P(3) = 3.1e-44
Identities = 44/122 (36%), Positives = 66/122 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK----RKKL 297
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL K ++L
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRL 491
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K K
Sbjct: 492 VEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK--KK 546
Query: 358 DI 359
DI
Sbjct: 547 DI 548
Score = 57 (25.1 bits), Expect = 3.1e-44, Sum P(3) = 3.1e-44
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 588 TGRAGEKGVAYTLLTPKDSNFAGDL 612
Score = 41 (19.5 bits), Expect = 6.3e-31, Sum P(3) = 6.3e-31
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 195 RQTVMFTATMPP-----AKILEYMPVTNLKPDTEDA-EDENKLLANYNSKKKY----RQT 244
RQT++F+AT A+ + P+ ++ D +A ED +++ +S K+ R+
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRL 491
Query: 245 VMFTAT 250
V FT++
Sbjct: 492 VEFTSS 497
Score = 37 (18.1 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 27/123 (21%), Positives = 45/123 (36%)
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
NQ ++L ++ + GGKG++ LN + GG L + G G +
Sbjct: 620 NQHVSKELLDLAMQNAWFRKSRFKGGKGKK-----LN-IGGGG---LGYRERPGLGSENS 670
Query: 1068 DVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY-DLKQMMISSPVTG 1126
D N ++ + E Y G G + +F ++ SH L S G
Sbjct: 671 DRGS--NNNVMSNYEAYKPSTGAMGDR-LTAMKAAFQSQYKSHFVAASLSNQKAGSSAAG 727
Query: 1127 RAG 1129
+G
Sbjct: 728 ASG 730
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 378 (138.1 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 82/175 (46%), Positives = 116/175 (66%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSL 793
L E+L I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
P + R A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR
Sbjct: 77 PPLQR--SAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I++ATPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P
Sbjct: 135 RGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Score = 378 (138.1 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 82/175 (46%), Positives = 116/175 (66%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSL 1468
L E+L I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
P + R A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR
Sbjct: 77 PPLQR--SAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I++ATPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P
Sbjct: 135 RGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Score = 371 (135.7 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 96/260 (36%), Positives = 150/260 (57%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSLPKIARMED 60
I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S P + R
Sbjct: 25 IREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR--S 82
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR G +I++A
Sbjct: 83 AKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P + + + +
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPES--RQNLLFSAT 200
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+K + K + ++ A A +T++ D + + +LL+ K
Sbjct: 201 FSKEIKELTDKLLHSPALIEVARRNTAAAR----ITHVVHPV-DRQRKRELLSFMIGSKN 255
Query: 241 YRQTVMFTATMPPAVERLAR 260
+RQ ++FT T A RL++
Sbjct: 256 WRQVLVFTRTKHGA-NRLSQ 274
Score = 320 (117.7 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 71/212 (33%), Positives = 115/212 (54%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +LV
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+DI + VIN+++ + +DY HR+GRTGRA +G+A+S + D+ L D+
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 1791 KQMMISSPVSTCPPELLNHPDAQHKPGTVMVP 1822
++++ S P E++ P + P T P
Sbjct: 372 EKLLQSK----MPQEVI--PGYEPSPFTKAAP 397
Score = 316 (116.3 bits), Expect = 1.7e-63, Sum P(2) = 1.7e-63
Identities = 65/186 (34%), Positives = 106/186 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +LV
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+DI + VIN+++ + +DY HR+GRTGRA +G+A+S + D+ L D+
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 1116 KQMMIS 1121
++++ S
Sbjct: 372 EKLLQS 377
Score = 154 (59.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +L+
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 362 A 362
A
Sbjct: 312 A 312
Score = 63 (27.2 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS-PVSTCP 1162
TGRA +G+A+S + D+ L D+++++ S P P
Sbjct: 347 TGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMPQEVIP 385
Score = 44 (20.5 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
D + + +LL+ K +RQ ++FT T A RL++
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGA-NRLSQ 274
Score = 44 (20.5 bits), Expect = 6.5e-35, Sum P(2) = 6.5e-35
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
D + + +LL+ K +RQ ++FT T A RL++
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGA-NRLSQ 274
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 378 (138.1 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 82/175 (46%), Positives = 116/175 (66%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSL 793
L E+L I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
P + R A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR
Sbjct: 77 PPLQR--SAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I++ATPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P
Sbjct: 135 RGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Score = 378 (138.1 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 82/175 (46%), Positives = 116/175 (66%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSL 1468
L E+L I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S
Sbjct: 17 LSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSR 76
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
P + R A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR
Sbjct: 77 PPLQR--SAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLR 134
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I++ATPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P
Sbjct: 135 RGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLP 189
Score = 371 (135.7 bits), Expect = 3.7e-36, Sum P(2) = 3.7e-36
Identities = 96/260 (36%), Positives = 150/260 (57%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-QSLPKIARMED 60
I + GY EPTP+QRQAIP+ LQ RD++ A+TG+GKT F LPLL + S P + R
Sbjct: 25 IREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQR--S 82
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A A+I+ PTRELA Q+ E +G L ++ +V GG+S + Q LR G +I++A
Sbjct: 83 AKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRL+D++ L L++ + VLDEADRM+DMGF PD+++IL+ +P + + + +
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPES--RQNLLFSAT 200
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+K + K + ++ A A +T++ D + + +LL+ K
Sbjct: 201 FSKEIKELTDKLLHSPALIEVARRNTAAAR----ITHVVHPV-DRQRKRELLSFMIGSKN 255
Query: 241 YRQTVMFTATMPPAVERLAR 260
+RQ ++FT T A RL++
Sbjct: 256 WRQVLVFTRTKHGA-NRLSQ 274
Score = 320 (117.7 bits), Expect = 6.3e-64, Sum P(2) = 6.3e-64
Identities = 71/212 (33%), Positives = 115/212 (54%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +LV
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+DI + VIN+++ + +DY HR+GRTGRA +G+A+S + D+ L D+
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 1791 KQMMISSPVSTCPPELLNHPDAQHKPGTVMVP 1822
++++ S P E++ P + P T P
Sbjct: 372 EKLLQSK----MPQEVI--PGYEPSPFTKAAP 397
Score = 316 (116.3 bits), Expect = 1.7e-63, Sum P(2) = 1.7e-63
Identities = 65/186 (34%), Positives = 106/186 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +LV
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+DI + VIN+++ + +DY HR+GRTGRA +G+A+S + D+ L D+
Sbjct: 312 ATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDI 371
Query: 1116 KQMMIS 1121
++++ S
Sbjct: 372 EKLLQS 377
Score = 154 (59.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ ++F+AT ++ L L PA + + RI +V+ + Q KR+ L ++
Sbjct: 192 RQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFMI 251
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F K GA+ L++ LE G ++ +HG K Q R AL K G +L+
Sbjct: 252 GSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLV 311
Query: 362 A 362
A
Sbjct: 312 A 312
Score = 63 (27.2 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS-PVSTCP 1162
TGRA +G+A+S + D+ L D+++++ S P P
Sbjct: 347 TGRASNDGVAISLVSGDEVRLLRDIEKLLQSKMPQEVIP 385
Score = 44 (20.5 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
D + + +LL+ K +RQ ++FT T A RL++
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGA-NRLSQ 274
Score = 44 (20.5 bits), Expect = 6.5e-35, Sum P(2) = 6.5e-35
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
D + + +LL+ K +RQ ++FT T A RL++
Sbjct: 239 DRQRKRELLSFMIGSKNWRQVLVFTRTKHGA-NRLSQ 274
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 407 (148.3 bits), Expect = 7.6e-64, Sum P(2) = 7.6e-64
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 1366 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 1425
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 214 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 270
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 271 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 326
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 327 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 386
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 387 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 423
Score = 407 (148.3 bits), Expect = 6.0e-63, Sum P(3) = 6.0e-63
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 691 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 750
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 214 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 270
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 271 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 326
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 327 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 386
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 387 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 423
Score = 387 (141.3 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 263 IRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 319
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 320 D-GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 378
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 379 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 423
Score = 331 (121.6 bits), Expect = 7.6e-64, Sum P(2) = 7.6e-64
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 427 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 486
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 487 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 543
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 544 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 603
Query: 1786 LFYDL 1790
DL
Sbjct: 604 FAGDL 608
Score = 331 (121.6 bits), Expect = 6.0e-63, Sum P(3) = 6.0e-63
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 427 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 486
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 487 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 543
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 544 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 603
Query: 1111 LFYDL 1115
DL
Sbjct: 604 FAGDL 608
Score = 154 (59.3 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 41/126 (32%), Positives = 65/126 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 427 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 486
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 487 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 543
Query: 357 KDILMA 362
IL+A
Sbjct: 544 IPILVA 549
Score = 57 (25.1 bits), Expect = 1.1e-43, Sum P(4) = 1.1e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 584 TGRAGEKGVAYTLLTPKDSNFAGDL 608
Score = 38 (18.4 bits), Expect = 6.0e-63, Sum P(3) = 6.0e-63
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L Y L ++ D + N +++NY + K
Sbjct: 653 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 682
Score = 38 (18.4 bits), Expect = 4.0e-42, Sum P(3) = 4.0e-42
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L Y L ++ D + N +++NY + K
Sbjct: 653 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 682
Score = 38 (18.4 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 163 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L Y L ++ D + N +++NY + K
Sbjct: 653 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 682
Score = 38 (18.4 bits), Expect = 8.7e-31, Sum P(2) = 8.7e-31
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
L Y L ++ D + N +++NY + K
Sbjct: 653 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 682
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 404 (147.3 bits), Expect = 8.8e-64, Sum P(2) = 8.8e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 404 (147.3 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 3.6e-60, Sum P(3) = 3.6e-60
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 341 (125.1 bits), Expect = 8.8e-64, Sum P(2) = 8.8e-64
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 341 (125.1 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 164 (62.8 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 7.1e-43, Sum P(4) = 7.1e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
Score = 37 (18.1 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 163 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 404 (147.3 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 404 (147.3 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 341 (125.1 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 341 (125.1 bits), Expect = 9.0e-64, Sum P(2) = 9.0e-64
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 164 (62.8 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 404 (147.3 bits), Expect = 9.3e-64, Sum P(2) = 9.3e-64
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 404 (147.3 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 341 (125.1 bits), Expect = 9.3e-64, Sum P(2) = 9.3e-64
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 341 (125.1 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 164 (62.8 bits), Expect = 4.8e-43, Sum P(4) = 4.8e-43
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 4.8e-43, Sum P(4) = 4.8e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
Score = 39 (18.8 bits), Expect = 1.5e-62, Sum P(3) = 1.5e-62
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742
NQ ++L ++ + GGKG++ LN + GG + +D
Sbjct: 621 NQHVSKELLDLAMQNAWFRKSRFKGGKGKK-----LN-IGGGGLGYRERPGLGSENMDRG 674
Query: 1743 DVSMVINYDMAK 1754
+ +++ NY+ K
Sbjct: 675 NNNVMSNYEAYK 686
Score = 39 (18.8 bits), Expect = 7.3e-42, Sum P(3) = 7.3e-42
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
NQ ++L ++ + GGKG++ LN + GG + +D
Sbjct: 621 NQHVSKELLDLAMQNAWFRKSRFKGGKGKK-----LN-IGGGGLGYRERPGLGSENMDRG 674
Query: 1068 DVSMVINYDMAK 1079
+ +++ NY+ K
Sbjct: 675 NNNVMSNYEAYK 686
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 403 (146.9 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 403 (146.9 bits), Expect = 1.9e-62, Sum P(3) = 1.9e-62
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 383 (139.9 bits), Expect = 3.2e-60, Sum P(3) = 3.2e-60
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 341 (125.1 bits), Expect = 1.2e-63, Sum P(2) = 1.2e-63
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 341 (125.1 bits), Expect = 1.9e-62, Sum P(3) = 1.9e-62
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 164 (62.8 bits), Expect = 6.4e-43, Sum P(4) = 6.4e-43
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 6.4e-43, Sum P(4) = 6.4e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
Score = 39 (18.8 bits), Expect = 1.9e-62, Sum P(3) = 1.9e-62
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742
NQ ++L ++ + GGKG++ LN + GG + +D
Sbjct: 621 NQHVSKELLDLAMQNAWFRKSRFKGGKGKK-----LN-IGGGGLGYRERPGLGSENMDRG 674
Query: 1743 DVSMVINYDMAK 1754
+ +++ NY+ K
Sbjct: 675 NNNVMSNYEAYK 686
Score = 39 (18.8 bits), Expect = 9.6e-42, Sum P(3) = 9.6e-42
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
NQ ++L ++ + GGKG++ LN + GG + +D
Sbjct: 621 NQHVSKELLDLAMQNAWFRKSRFKGGKGKK-----LN-IGGGGLGYRERPGLGSENMDRG 674
Query: 1068 DVSMVINYDMAK 1079
+ +++ NY+ K
Sbjct: 675 NNNVMSNYEAYK 686
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 404 (147.3 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 876
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 404 (147.3 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 85/211 (40%), Positives = 124/211 (58%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
+ + +T + R ++ + G P P ++ +++ I K Y +PTPIQ
Sbjct: 222 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC 281
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I+ PTRE
Sbjct: 282 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRE 337
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV 1551
L QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID ++ +
Sbjct: 338 LCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATN 397
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 398 LQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 3.6e-61, Sum P(2) = 3.6e-61
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 337 (123.7 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 76/185 (41%), Positives = 110/185 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R + K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 337 (123.7 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 76/185 (41%), Positives = 110/185 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R + K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 160 (61.4 bits), Expect = 2.4e-43, Sum P(3) = 2.4e-43
Identities = 43/123 (34%), Positives = 65/123 (52%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R + K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 2.4e-43, Sum P(3) = 2.4e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 354 (129.7 bits), Expect = 6.7e-31, Sum P(2) = 6.7e-31
Identities = 99/298 (33%), Positives = 156/298 (52%)
Query: 693 HWTEKSLDEMTERDWRIFREDYSITIKGGKVPDP-VRNWKEAS-LPTEILEIIEKI-GYA 749
++ +LD + + + F D+SI I P +R S LP ++ + G+A
Sbjct: 35 YFQSPALDNVPQTEIDKFLSDHSIKITDASADKPSLRPIISFSFLPPSNKDLYAPLDGFA 94
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
PT IQ P+ RD+IG+AETGSGKTLAF LP L + L + + P A+
Sbjct: 95 SPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDL----KTKQKSCRPLAV 150
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
+++PTRELA QI ++ KF + I+ + GG+ ++EQ L+ +V+ATPGRL D+
Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALK-SAAVVVATPGRLKDL 209
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 929
+ L L + Y+VLDEADRM+D GFE D++ I+ MPV+ + A ++ N
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWP-PIVRNL 268
Query: 930 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK 987
S V T P+ + A S +++ + V KP E+ +++V IL+ +
Sbjct: 269 ASTFM-TSPVTVTIGGDPSADPRANSRIKQ-----VVEVVKPHEKEQRLVQILNRHQR 320
Score = 354 (129.7 bits), Expect = 5.8e-30, P = 5.8e-30
Identities = 99/298 (33%), Positives = 156/298 (52%)
Query: 1368 HWTEKSLDEMTERDWRIFREDYSITIKGGKVPDP-VRNWKEAS-LPTEILEIIEKI-GYA 1424
++ +LD + + + F D+SI I P +R S LP ++ + G+A
Sbjct: 35 YFQSPALDNVPQTEIDKFLSDHSIKITDASADKPSLRPIISFSFLPPSNKDLYAPLDGFA 94
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
PT IQ P+ RD+IG+AETGSGKTLAF LP L + L + + P A+
Sbjct: 95 SPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDL----KTKQKSCRPLAV 150
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
+++PTRELA QI ++ KF + I+ + GG+ ++EQ L+ +V+ATPGRL D+
Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALK-SAAVVVATPGRLKDL 209
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 1604
+ L L + Y+VLDEADRM+D GFE D++ I+ MPV+ + A ++ N
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWP-PIVRNL 268
Query: 1605 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK 1662
S V T P+ + A S +++ + V KP E+ +++V IL+ +
Sbjct: 269 ASTFM-TSPVTVTIGGDPSADPRANSRIKQ-----VVEVVKPHEKEQRLVQILNRHQR 320
Score = 348 (127.6 bits), Expect = 2.4e-63, Sum P(4) = 2.4e-63
Identities = 76/182 (41%), Positives = 110/182 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT------ERIEQIVYILSEQDKRK 989
RQTVMFTAT PP V LA +++ P TV IG G P+ RI+Q+V ++ +K +
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIG--GDPSADPRANSRIKQVVEVVKPHEKEQ 309
Query: 990 KLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046
+L+++LNR G V+ F KK A + + L G+ +HG Q++R +L +
Sbjct: 310 RLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAF 369
Query: 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1106
K G+ +LVATDVA RG+DI V +V+N ++EDY HRIGRTGRAG +G A++ T+
Sbjct: 370 KSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTE 429
Query: 1107 DD 1108
D
Sbjct: 430 TD 431
Score = 348 (127.6 bits), Expect = 5.7e-62, Sum P(3) = 5.7e-62
Identities = 76/182 (41%), Positives = 110/182 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT------ERIEQIVYILSEQDKRK 1664
RQTVMFTAT PP V LA +++ P TV IG G P+ RI+Q+V ++ +K +
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIG--GDPSADPRANSRIKQVVEVVKPHEKEQ 309
Query: 1665 KLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
+L+++LNR G V+ F KK A + + L G+ +HG Q++R +L +
Sbjct: 310 RLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAF 369
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTK 1781
K G+ +LVATDVA RG+DI V +V+N ++EDY HRIGRTGRAG +G A++ T+
Sbjct: 370 KSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTE 429
Query: 1782 DD 1783
D
Sbjct: 430 TD 431
Score = 335 (123.0 bits), Expect = 2.4e-63, Sum P(4) = 2.4e-63
Identities = 72/164 (43%), Positives = 103/164 (62%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+A PT IQ P+ RD+IG+AETGSGKTLAF LP L + L + + P
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDL----KTKQKSCRP 147
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A++++PTRELA QI ++ KF + I+ + GG+ ++EQ L+ +V+ATPGRL
Sbjct: 148 LAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALK-SAAVVVATPGRL 206
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 169
D+ + L L + Y+VLDEADRM+D GFE D++ I+ MPV+
Sbjct: 207 KDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVS 250
Score = 194 (73.4 bits), Expect = 4.2e-46, Sum P(4) = 4.2e-46
Identities = 47/130 (36%), Positives = 73/130 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT------ERIEQIVYILSEQDKRK 295
RQTVMFTAT PP V LA +++ P TV IG G P+ RI+Q+V ++ +K +
Sbjct: 252 RQTVMFTATWPPIVRNLASTFMTSPVTVTIG--GDPSADPRANSRIKQVVEVVKPHEKEQ 309
Query: 296 KLMEVLNR---GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
+L+++LNR G V+ F KK A + + L G+ +HG Q++R +L +
Sbjct: 310 RLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAF 369
Query: 353 KGGSKDILMA 362
K G+ +L+A
Sbjct: 370 KSGAATVLVA 379
Score = 57 (25.1 bits), Expect = 2.4e-63, Sum P(4) = 2.4e-63
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 195 RQTVMFTATMPP 206
RQTVMFTAT PP
Sbjct: 252 RQTVMFTATWPP 263
Score = 48 (22.0 bits), Expect = 5.3e-31, Sum P(3) = 5.3e-31
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 320 DVLAKGLEKLGYN-ACTLHGGKGQEQRELALNS 351
D L K EK+ AC G K EQRE AL S
Sbjct: 164 DQLVKFAEKVDIQVACIFGGVKKDEQRE-ALKS 195
Score = 47 (21.6 bits), Expect = 2.4e-63, Sum P(4) = 2.4e-63
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG +G A++ T+ D
Sbjct: 414 TGRAGADGHAITLFTETD 431
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 367 (134.2 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 76/184 (41%), Positives = 113/184 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+MF+AT P ++ LAR +L + +G VG +E I Q + + + DK+ L+++L
Sbjct: 347 RQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLL 406
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ K +IFV K+ AD L L + A +HG + Q +RE AL++ K DILV
Sbjct: 407 SAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILV 466
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
AT VA RG+DI +V+ VINYD+ I+DY HRIGRTGRAG G+A SF ++ ++ L
Sbjct: 467 ATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGL 526
Query: 1116 KQMM 1119
+++
Sbjct: 527 MEIL 530
Score = 367 (134.2 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 76/184 (41%), Positives = 113/184 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+MF+AT P ++ LAR +L + +G VG +E I Q + + + DK+ L+++L
Sbjct: 347 RQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLL 406
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ K +IFV K+ AD L L + A +HG + Q +RE AL++ K DILV
Sbjct: 407 SAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILV 466
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
AT VA RG+DI +V+ VINYD+ I+DY HRIGRTGRAG G+A SF ++ ++ L
Sbjct: 467 ATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGL 526
Query: 1791 KQMM 1794
+++
Sbjct: 527 MEIL 530
Score = 364 (133.2 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 79/200 (39%), Positives = 121/200 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
++ + G VP+P+ ++ L ++E I+ + +PTP+Q+ +IPI + RD++
Sbjct: 138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query: 772 AETGSGKTLAFLLPLLVWI-----QSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEET 825
A+TGSGKT FL PL + +P+ A+ + +G P A+++APTRELA QI EE
Sbjct: 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query: 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885
KF +R +V GG Q + GC++++ATPGRL D+LE + L Y+VL
Sbjct: 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVL 317
Query: 886 DEADRMIDMGFEPDVQKILE 905
DEADRM+DMGFEP ++ I+E
Sbjct: 318 DEADRMLDMGFEPQIRHIVE 337
Score = 364 (133.2 bits), Expect = 2.9e-63, Sum P(2) = 2.9e-63
Identities = 79/200 (39%), Positives = 121/200 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
++ + G VP+P+ ++ L ++E I+ + +PTP+Q+ +IPI + RD++
Sbjct: 138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query: 1447 AETGSGKTLAFLLPLLVWI-----QSLPKIARMEDADQG-PYAIIMAPTRELAQQIEEET 1500
A+TGSGKT FL PL + +P+ A+ + +G P A+++APTRELA QI EE
Sbjct: 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560
KF +R +V GG Q + GC++++ATPGRL D+LE + L Y+VL
Sbjct: 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVL 317
Query: 1561 DEADRMIDMGFEPDVQKILE 1580
DEADRM+DMGFEP ++ I+E
Sbjct: 318 DEADRMLDMGFEPQIRHIVE 337
Score = 333 (122.3 bits), Expect = 7.7e-60, Sum P(3) = 7.7e-60
Identities = 73/169 (43%), Positives = 106/169 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI-----QSLPKIA 56
I+ + +PTP+Q+ +IPI + RD++ A+TGSGKT FL PL + +P+ A
Sbjct: 169 IKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKA 228
Query: 57 RMEDADQG-PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC 115
+ + +G P A+++APTRELA QI EE KF +R +V GG Q + GC
Sbjct: 229 QSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGC 288
Query: 116 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
++++ATPGRL D+LE + L Y+VLDEADRM+DMGFEP ++ I+E
Sbjct: 289 DLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Score = 199 (75.1 bits), Expect = 5.9e-43, Sum P(4) = 5.9e-43
Identities = 44/121 (36%), Positives = 69/121 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+MF+AT P ++ LAR +L + +G VG +E I Q + + + DK+ L+++L
Sbjct: 347 RQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLL 406
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ K +IFV K+ AD L L + A +HG + Q +RE AL++ K DIL+
Sbjct: 407 SAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILV 466
Query: 362 A 362
A
Sbjct: 467 A 467
Score = 53 (23.7 bits), Expect = 5.9e-43, Sum P(4) = 5.9e-43
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG G+A SF ++ ++ L +++
Sbjct: 502 TGRAGNTGVATSFFNSNNQNIVKGLMEIL 530
Score = 44 (20.5 bits), Expect = 7.7e-60, Sum P(3) = 7.7e-60
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 347 RQTLMFSATFP 357
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 368 (134.6 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 75/203 (36%), Positives = 119/203 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P +E LA L + IG P + QI+ + E K+KKL E+LN
Sbjct: 385 QTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 444
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L+ + K+ CT +H K Q +R L L ++
Sbjct: 445 DKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEV 504
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
+V+T V GRG+D+ +V +V+N+DM S+++Y H++GR GR G G A++F + LF+
Sbjct: 505 IVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 564
Query: 1789 DLKQMMISSPVSTC-PPELLNHP 1810
D+ + + P T PP+LLN P
Sbjct: 565 DVVKRV--KPTGTILPPQLLNSP 585
Score = 363 (132.8 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 81/192 (42%), Positives = 118/192 (61%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
I I+G +VP P+ ++ P + ++ GY PTPIQ Q IP+GL RDI+ A+TG
Sbjct: 197 IAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTG 256
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF--GTPLG 833
SGKT AFLLP+++ ++ + + P A+I+APTRELA QIE + + G P
Sbjct: 257 SGKTAAFLLPVIM---------KVLNETETPSALILAPTRELAIQIERQAKELMAGLP-N 306
Query: 834 IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893
+RTVL+VGGL Q RL+ +++IATPGRL+++L + L+ +V+DE D M+
Sbjct: 307 MRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLK 366
Query: 894 MGFEPDVQKILE 905
MGF+ V ILE
Sbjct: 367 MGFQQQVLDILE 378
Score = 363 (132.8 bits), Expect = 3.2e-63, Sum P(2) = 3.2e-63
Identities = 81/192 (42%), Positives = 118/192 (61%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
I I+G +VP P+ ++ P + ++ GY PTPIQ Q IP+GL RDI+ A+TG
Sbjct: 197 IAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTG 256
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF--GTPLG 1508
SGKT AFLLP+++ ++ + + P A+I+APTRELA QIE + + G P
Sbjct: 257 SGKTAAFLLPVIM---------KVLNETETPSALILAPTRELAIQIERQAKELMAGLP-N 306
Query: 1509 IRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568
+RTVL+VGGL Q RL+ +++IATPGRL+++L + L+ +V+DE D M+
Sbjct: 307 MRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLK 366
Query: 1569 MGFEPDVQKILE 1580
MGF+ V ILE
Sbjct: 367 MGFQQQVLDILE 378
Score = 342 (125.4 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 67/182 (36%), Positives = 108/182 (59%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P +E LA L + IG P + QI+ + E K+KKL E+LN
Sbjct: 385 QTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 444
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L+ + K+ CT +H K Q +R L L ++
Sbjct: 445 DKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEV 504
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
+V+T V GRG+D+ +V +V+N+DM S+++Y H++GR GR G G A++F + LF+
Sbjct: 505 IVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 564
Query: 1114 DL 1115
D+
Sbjct: 565 DV 566
Score = 330 (121.2 bits), Expect = 9.6e-60, Sum P(2) = 9.6e-60
Identities = 74/165 (44%), Positives = 105/165 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ GY PTPIQ Q IP+GL RDI+ A+TGSGKT AFLLP+++ ++ +
Sbjct: 224 LKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIM---------KVLNE 274
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P A+I+APTRELA QIE + + G P +RTVL+VGGL Q RL+ +++I
Sbjct: 275 TETPSALILAPTRELAIQIERQAKELMAGLP-NMRTVLLVGGLPLPPQLHRLKQSVKVII 333
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
ATPGRL+++L + L+ +V+DE D M+ MGF+ V ILE
Sbjct: 334 ATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILE 378
Score = 183 (69.5 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P +E LA L + IG P + QI+ + E K+KKL E+LN
Sbjct: 385 QTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 444
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L+ + K+ CT +H K Q +R L L ++
Sbjct: 445 DKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEV 504
Query: 360 LMA 362
+++
Sbjct: 505 IVS 507
Score = 78 (32.5 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTC-PPELLNHP 1169
GR G G A++F + LF+D+ + + P T PP+LLN P
Sbjct: 543 GRLGHSGTAITFINNNSKKLFWDVVKRV--KPTGTILPPQLLNSP 585
Score = 58 (25.5 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 709 IFREDYSITIKGGK--VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 765
I R+ S+ + G K V D V + ++L+I+E I + T + IP+G+++
Sbjct: 342 ILRQS-SVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGIEH 399
Score = 58 (25.5 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 1384 IFREDYSITIKGGK--VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
I R+ S+ + G K V D V + ++L+I+E I + T + IP+G+++
Sbjct: 342 ILRQS-SVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGIEH 399
Score = 38 (18.4 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQN 24
I+E I + T + IP+G+++
Sbjct: 376 ILEDISHDHQTILVSATIPVGIEH 399
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 362 (132.5 bits), Expect = 3.6e-63, Sum P(2) = 3.6e-63
Identities = 73/179 (40%), Positives = 109/179 (60%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
E L IL+ + GY EPTP+Q A+P L+N D++ A+TG+GKT AF+LP L +
Sbjct: 5 ELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLS 64
Query: 792 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 851
S P + +GP +++ PTRELAQQ+ + +G + +R+ ++GG+ Q
Sbjct: 65 SPP-----QGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRL 119
Query: 852 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
L + ++ATPGRL+D+L+ R L L++ +VLDEADRM+DMGF DV +I P T
Sbjct: 120 LSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178
Score = 362 (132.5 bits), Expect = 3.6e-63, Sum P(2) = 3.6e-63
Identities = 73/179 (40%), Positives = 109/179 (60%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
E L IL+ + GY EPTP+Q A+P L+N D++ A+TG+GKT AF+LP L +
Sbjct: 5 ELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLS 64
Query: 1467 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526
S P + +GP +++ PTRELAQQ+ + +G + +R+ ++GG+ Q
Sbjct: 65 SPP-----QGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRL 119
Query: 1527 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
L + ++ATPGRL+D+L+ R L L++ +VLDEADRM+DMGF DV +I P T
Sbjct: 120 LSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPAT 178
Score = 359 (131.4 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 89/255 (34%), Positives = 139/255 (54%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY EPTP+Q A+P L+N D++ A+TG+GKT AF+LP L + S P + +GP
Sbjct: 20 GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPP-----QGPGRGP 74
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+++ PTRELAQQ+ + +G + +R+ ++GG+ Q L + ++ATPGRL
Sbjct: 75 RVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATPGRL 134
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP-DTEDAEDENKL 184
+D+L+ R L L++ +VLDEADRM+DMGF DV +I P T T +
Sbjct: 135 VDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTATMDSAMAR 194
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
LA ++ R + T T I + + V +D +N+LL + + + R+
Sbjct: 195 LAGRLLREPERIDIAGTKTTHE-HIEQRLHVA------DDLHHKNRLLRHLITDESLRRA 247
Query: 245 VMFTATMPPAVERLA 259
++F+AT A E LA
Sbjct: 248 IIFSATKRDA-ENLA 261
Score = 329 (120.9 bits), Expect = 3.6e-63, Sum P(2) = 3.6e-63
Identities = 71/175 (40%), Positives = 106/175 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME-- 993
RQT++FTATM A+ RLA LR P + I E IEQ +++ + + +L+
Sbjct: 179 RQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL 238
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ + +++ IIF K+ A+ LA L+ G++A LHG Q R + ++K G +
Sbjct: 239 ITDESLRR-AIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
LVATDVA RG+D+ +S VIN+D+ K EDY HRIGRTGRAG G+A+SF + ++
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNE 352
Score = 329 (120.9 bits), Expect = 3.6e-63, Sum P(2) = 3.6e-63
Identities = 71/175 (40%), Positives = 106/175 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME-- 1668
RQT++FTATM A+ RLA LR P + I E IEQ +++ + + +L+
Sbjct: 179 RQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL 238
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ + +++ IIF K+ A+ LA L+ G++A LHG Q R + ++K G +
Sbjct: 239 ITDESLRR-AIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
LVATDVA RG+D+ +S VIN+D+ K EDY HRIGRTGRAG G+A+SF + ++
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNE 352
Score = 158 (60.7 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME-- 299
RQT++FTATM A+ RLA LR P + I E IEQ +++ + + +L+
Sbjct: 179 RQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL 238
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ + +++ IIF K+ A+ LA L+ G++A LHG Q R + ++K G +
Sbjct: 239 ITDESLRR-AIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297
Query: 360 LMA 362
L+A
Sbjct: 298 LVA 300
Score = 52 (23.4 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG G+A+SF + ++
Sbjct: 335 TGRAGASGIAISFASLNE 352
Score = 49 (22.3 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 917 EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 953
+D +N+LL + + + R+ ++F+AT A E LA
Sbjct: 226 DDLHHKNRLLRHLITDESLRRAIIFSATKRDA-ENLA 261
Score = 49 (22.3 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 1592 EDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628
+D +N+LL + + + R+ ++F+AT A E LA
Sbjct: 226 DDLHHKNRLLRHLITDESLRRAIIFSATKRDA-ENLA 261
Score = 38 (18.4 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1315 NIAGIDIKAQKRDQSKFYGEMLEKRR 1340
N+A +++KAQ + +G+M + R
Sbjct: 259 NLA-LELKAQGHSAAALHGDMPQNAR 283
Score = 38 (18.4 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 640 NIAGIDIKAQKRDQSKFYGEMLEKRR 665
N+A +++KAQ + +G+M + R
Sbjct: 259 NLA-LELKAQGHSAAALHGDMPQNAR 283
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 398 (145.2 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 83/190 (43%), Positives = 116/190 (61%)
Query: 718 IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 777
+ G P P ++ +++ I K Y +PTPIQ Q +P+ L RD+IG+A+TGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 778 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 837
KT AF+ P+L+ I ++ E D GP A+I+ PTREL QQI E +FG +R+V
Sbjct: 303 KTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSV 358
Query: 838 LVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 897
V GG S EQ L+ G EIV+ TPGRLID ++ + L + +Y+V DEADRM DMGFE
Sbjct: 359 AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFE 418
Query: 898 PDVQKILEYM 907
V+ I ++
Sbjct: 419 YQVRSIASHV 428
Score = 398 (145.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 83/190 (43%), Positives = 116/190 (61%)
Query: 1393 IKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 1452
+ G P P ++ +++ I K Y +PTPIQ Q +P+ L RD+IG+A+TGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 1453 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 1512
KT AF+ P+L+ I ++ E D GP A+I+ PTREL QQI E +FG +R+V
Sbjct: 303 KTAAFIWPMLIHIMDQKEL---EPGD-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSV 358
Query: 1513 LVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFE 1572
V GG S EQ L+ G EIV+ TPGRLID ++ + L + +Y+V DEADRM DMGFE
Sbjct: 359 AVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFE 418
Query: 1573 PDVQKILEYM 1582
V+ I ++
Sbjct: 419 YQVRSIASHV 428
Score = 384 (140.2 bits), Expect = 4.0e-60, Sum P(3) = 4.0e-60
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ L RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + +Y+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 341 (125.1 bits), Expect = 4.3e-63, Sum P(2) = 4.3e-63
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 341 (125.1 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKD 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
+LVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 164 (62.8 bits), Expect = 7.9e-43, Sum P(4) = 7.9e-43
Identities = 43/123 (34%), Positives = 66/123 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV IL + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ G+N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK--K 546
Query: 357 KDI 359
KDI
Sbjct: 547 KDI 549
Score = 57 (25.1 bits), Expect = 7.9e-43, Sum P(4) = 7.9e-43
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
Score = 37 (18.1 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.2e-41, Sum P(3) = 1.2e-41
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 163 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
Score = 37 (18.1 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
L Y L + D + N +++NY + K
Sbjct: 658 LGYRERPGLGSENSDRGNNNNVMSNYEAYK 687
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 372 (136.0 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 76/193 (39%), Positives = 119/193 (61%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
++ + + G VP + ++EA+L + + + GY + TP+Q+ +IPI + RD++
Sbjct: 258 DEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMAC 317
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP+L ++ + A Q P AII+APTREL QI + KF
Sbjct: 318 AQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYG 377
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
+R V+V GG+ + GC I+ ATPGRL+D++ + L++ Y+VLDEADRM
Sbjct: 378 TCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRM 437
Query: 892 IDMGFEPDVQKIL 904
+DMGF P+++K++
Sbjct: 438 LDMGFAPEIEKLM 450
Score = 372 (136.0 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 76/193 (39%), Positives = 119/193 (61%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
++ + + G VP + ++EA+L + + + GY + TP+Q+ +IPI + RD++
Sbjct: 258 DEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMAC 317
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP+L ++ + A Q P AII+APTREL QI + KF
Sbjct: 318 AQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYG 377
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
+R V+V GG+ + GC I+ ATPGRL+D++ + L++ Y+VLDEADRM
Sbjct: 378 TCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRM 437
Query: 1567 IDMGFEPDVQKIL 1579
+DMGF P+++K++
Sbjct: 438 LDMGFAPEIEKLM 450
Score = 361 (132.1 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 77/180 (42%), Positives = 110/180 (61%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P + RLA +YL+ V +G VG + Q V + E K +KL
Sbjct: 458 KEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKL 517
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L K+ +IFVN KK AD +A L + +++ ++HG + Q QRE AL + G
Sbjct: 518 LEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKC 577
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
++V T VA RG+DI++V VINYD+ K +++Y HRIGRTGR G G A SF D H+
Sbjct: 578 TVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637
Score = 361 (132.1 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 77/180 (42%), Positives = 110/180 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P + RLA +YL+ V +G VG + Q V + E K +KL
Sbjct: 458 KEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKL 517
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L K+ +IFVN KK AD +A L + +++ ++HG + Q QRE AL + G
Sbjct: 518 LEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKC 577
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
++V T VA RG+DI++V VINYD+ K +++Y HRIGRTGR G G A SF D H+
Sbjct: 578 TVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637
Score = 346 (126.9 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 70/162 (43%), Positives = 104/162 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ + GY + TP+Q+ +IPI + RD++ A+TGSGKT AFLLP+L ++ + A
Sbjct: 289 VARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQ 348
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P AII+APTREL QI + KF +R V+V GG+ + GC I+ AT
Sbjct: 349 LQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCAT 408
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L++ Y+VLDEADRM+DMGF P+++K++
Sbjct: 409 PGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLM 450
Score = 196 (74.1 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P + RLA +YL+ V +G VG + Q V + E K +KL
Sbjct: 458 KEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKL 517
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L K+ +IFVN KK AD +A L + +++ ++HG + Q QRE AL + G
Sbjct: 518 LEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKC 577
Query: 358 DILM 361
+++
Sbjct: 578 TVIV 581
Score = 50 (22.7 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHL 1145
TGR G G A SF D H+
Sbjct: 617 TGRCGNTGKATSFFNVQDDHV 637
Score = 47 (21.6 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 458 KEKRQTLMFSATYP 471
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 407 (148.3 bits), Expect = 5.1e-63, Sum P(2) = 5.1e-63
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 1366 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 1425
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 219 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQ 275
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 276 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 331
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 407 (148.3 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 691 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 750
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 219 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQ 275
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 276 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 331
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 387 (141.3 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 268 IRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 324
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 325 D-GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 383
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 384 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 428
Score = 331 (121.6 bits), Expect = 5.1e-63, Sum P(2) = 5.1e-63
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 491
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 548
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1786 LFYDL 1790
DL
Sbjct: 609 FAGDL 613
Score = 331 (121.6 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 491
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 548
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 549 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 608
Query: 1111 LFYDL 1115
DL
Sbjct: 609 FAGDL 613
Score = 154 (59.3 bits), Expect = 3.2e-42, Sum P(4) = 3.2e-42
Identities = 41/126 (32%), Positives = 65/126 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 432 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 491
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 492 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 548
Query: 357 KDILMA 362
IL+A
Sbjct: 549 IPILVA 554
Score = 57 (25.1 bits), Expect = 3.2e-42, Sum P(4) = 3.2e-42
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 589 TGRAGEKGVAYTLLTPKDSNFAGDL 613
Score = 38 (18.4 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L Y L ++ D + N +++NY + K
Sbjct: 658 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 687
Score = 38 (18.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L Y L ++ D + N +++NY + K
Sbjct: 658 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 687
Score = 38 (18.4 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 163 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L Y L ++ D + N +++NY + K
Sbjct: 658 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 687
Score = 38 (18.4 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
L Y L ++ D + N +++NY + K
Sbjct: 658 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 687
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 407 (148.3 bits), Expect = 5.1e-63, Sum P(2) = 5.1e-63
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 1366 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 1425
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 221 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 277
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 278 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 333
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 334 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 393
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 394 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 430
Score = 407 (148.3 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 87/217 (40%), Positives = 126/217 (58%)
Query: 691 DRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAE 750
D H + + +T + R ++ + G P P ++ +++ I K Y +
Sbjct: 221 DEH---EEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 277
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E D GP A+I
Sbjct: 278 PTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPGD-GPIAVI 333
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ TPGRLID +
Sbjct: 334 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 393
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
+ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 394 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 430
Score = 387 (141.3 bits), Expect = 1.7e-59, Sum P(3) = 1.7e-59
Identities = 80/165 (48%), Positives = 107/165 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ Q +P+ + RD+IG+A+TGSGKT AF+ P+L+ I ++ E
Sbjct: 270 IRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKEL---EPG 326
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
D GP A+I+ PTREL QQI E +FG +R+V V GG S EQ L+ G EIV+ T
Sbjct: 327 D-GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCT 385
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
PGRLID ++ + L + TY+V DEADRM DMGFE V+ I ++
Sbjct: 386 PGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHV 430
Score = 331 (121.6 bits), Expect = 5.1e-63, Sum P(2) = 5.1e-63
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 434 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 493
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 494 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 550
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1785
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 551 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 610
Query: 1786 LFYDL 1790
DL
Sbjct: 611 FAGDL 615
Score = 331 (121.6 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 75/185 (40%), Positives = 109/185 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 434 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 493
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 494 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 550
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSH 1110
ILVATDVA RG+DI + VINYD+A+ I+ +THRIGRTGRAG++G+A + T DS+
Sbjct: 551 IPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 610
Query: 1111 LFYDL 1115
DL
Sbjct: 611 FAGDL 615
Score = 154 (59.3 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 41/126 (32%), Positives = 65/126 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQT++F+AT +E+LAR L P V G +G+ E + QIV I + ++
Sbjct: 434 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRR 493
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V++FV +K A+ LA L++ +N LHG Q +R ++ K
Sbjct: 494 LVEFTSSG---SVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKG 550
Query: 357 KDILMA 362
IL+A
Sbjct: 551 IPILVA 556
Score = 57 (25.1 bits), Expect = 3.3e-42, Sum P(4) = 3.3e-42
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL 1149
TGRAG++G+A + T DS+ DL
Sbjct: 591 TGRAGEKGVAYTLLTPKDSNFAGDL 615
Score = 38 (18.4 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L Y L ++ D + N +++NY + K
Sbjct: 660 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 689
Score = 38 (18.4 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L Y L ++ D + N +++NY + K
Sbjct: 660 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 689
Score = 38 (18.4 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 163 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L Y L ++ D + N +++NY + K
Sbjct: 660 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 689
Score = 38 (18.4 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
L Y L ++ D + N +++NY + K
Sbjct: 660 LGYRERPGLGSESSDRGNNNSVMSNYEAYK 689
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 369 (135.0 bits), Expect = 5.7e-63, Sum P(2) = 5.7e-63
Identities = 75/184 (40%), Positives = 113/184 (61%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + QDK+ L+++L
Sbjct: 335 RQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLL 394
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ +IFV K+ AD L L + A +HG + Q +RE AL + + G+ +LV
Sbjct: 395 SASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
AT VA RG+DI +V+ VINYD+ ++DY HRIGRTGRAG GLA +F ++S++ L
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGL 514
Query: 1116 KQMM 1119
+++
Sbjct: 515 HEIL 518
Score = 369 (135.0 bits), Expect = 5.7e-63, Sum P(2) = 5.7e-63
Identities = 75/184 (40%), Positives = 113/184 (61%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + QDK+ L+++L
Sbjct: 335 RQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLL 394
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ +IFV K+ AD L L + A +HG + Q +RE AL + + G+ +LV
Sbjct: 395 SASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
AT VA RG+DI +V+ VINYD+ ++DY HRIGRTGRAG GLA +F ++S++ L
Sbjct: 455 ATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGL 514
Query: 1791 KQMM 1794
+++
Sbjct: 515 HEIL 518
Score = 358 (131.1 bits), Expect = 5.7e-63, Sum P(2) = 5.7e-63
Identities = 81/207 (39%), Positives = 118/207 (57%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G VP+P+ + L +LE I+ + +PTP+Q+ ++PI RD++
Sbjct: 126 DDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMAC 185
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--------PYAIIMAPTRELAQQIEE 823
A+TGSGKT FL P+L +S + QG P A+IMAPTRELA QI +
Sbjct: 186 AQTGSGKTGGFLFPVLS--ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFD 243
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
E KF ++ +V GG Q + GC++++ATPGRL D+LE + L Y+
Sbjct: 244 EAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYL 303
Query: 884 VLDEADRMIDMGFEPDVQKILEYMPVT 910
VLDEADRM+DMGFEP ++ I+E +T
Sbjct: 304 VLDEADRMLDMGFEPQIRHIVEDCDMT 330
Score = 358 (131.1 bits), Expect = 5.7e-63, Sum P(2) = 5.7e-63
Identities = 81/207 (39%), Positives = 118/207 (57%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G VP+P+ + L +LE I+ + +PTP+Q+ ++PI RD++
Sbjct: 126 DDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMAC 185
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--------PYAIIMAPTRELAQQIEE 1498
A+TGSGKT FL P+L +S + QG P A+IMAPTRELA QI +
Sbjct: 186 AQTGSGKTGGFLFPVLS--ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFD 243
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
E KF ++ +V GG Q + GC++++ATPGRL D+LE + L Y+
Sbjct: 244 EAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYL 303
Query: 1559 VLDEADRMIDMGFEPDVQKILEYMPVT 1585
VLDEADRM+DMGFEP ++ I+E +T
Sbjct: 304 VLDEADRMLDMGFEPQIRHIVEDCDMT 330
Score = 322 (118.4 bits), Expect = 4.4e-59, Sum P(3) = 4.4e-59
Identities = 72/171 (42%), Positives = 102/171 (59%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG-- 64
+ +PTP+Q+ ++PI RD++ A+TGSGKT FL P+L +S + QG
Sbjct: 162 FTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS--ESFKTGPSPQPESQGSF 219
Query: 65 ------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 118
P A+IMAPTRELA QI +E KF ++ +V GG Q + GC+++
Sbjct: 220 YQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLL 279
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 169
+ATPGRL D+LE + L Y+VLDEADRM+DMGFEP ++ I+E +T
Sbjct: 280 VATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMT 330
Score = 197 (74.4 bits), Expect = 4.4e-42, Sum P(4) = 4.4e-42
Identities = 43/121 (35%), Positives = 68/121 (56%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+MF+AT P ++ LAR +L + +G VG +E I Q V + QDK+ L+++L
Sbjct: 335 RQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLL 394
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ +IFV K+ AD L L + A +HG + Q +RE AL + + G+ +L+
Sbjct: 395 SASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAATLLV 454
Query: 362 A 362
A
Sbjct: 455 A 455
Score = 58 (25.5 bits), Expect = 4.4e-42, Sum P(4) = 4.4e-42
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG GLA +F ++S++ L +++
Sbjct: 490 TGRAGNTGLATAFFNSENSNIVKGLHEIL 518
Score = 44 (20.5 bits), Expect = 4.4e-59, Sum P(3) = 4.4e-59
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 335 RQTLMFSATFP 345
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 362 (132.5 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 81/176 (46%), Positives = 114/176 (64%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L +IL + + GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHL- 63
Query: 795 KIARMEDAD-QGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 852
I R A + P A+I+ PTRELA QI E + L IR+++V GG+S Q +L
Sbjct: 64 -ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 853 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
R G ++++ATPGRL+D+ + L+Q +VLDEADRM+DMGF D++++L +P
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
Score = 362 (132.5 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 81/176 (46%), Positives = 114/176 (64%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L +IL + + GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L
Sbjct: 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHL- 63
Query: 1470 KIARMEDAD-QGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 1527
I R A + P A+I+ PTRELA QI E + L IR+++V GG+S Q +L
Sbjct: 64 -ITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 1528 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
R G ++++ATPGRL+D+ + L+Q +VLDEADRM+DMGF D++++L +P
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
Score = 352 (129.0 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 101/273 (36%), Positives = 152/273 (55%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD-QG 64
GY EPTPIQ+QAIP L+ RD++ A+TG+GKT F LPLL Q L I R A +
Sbjct: 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL---QHL--ITRQPHAKGRR 74
Query: 65 PY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
P A+I+ PTRELA QI E + L IR+++V GG+S Q +LR G ++++ATPG
Sbjct: 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT--NLKPDTEDAED- 180
RL+D+ + L+Q +VLDEADRM+DMGF D++++L +P NL ++D
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194
Query: 181 ---ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
KLL N + R+ TA+ + + ++ D + + +LL++
Sbjct: 195 KALAEKLLHNPLEIEVARRN---TASDQVTQHVHFV----------DKKRKRELLSHMIG 241
Query: 238 KKKYRQTVMFTATMPPA---VERLARSYLRRPA 267
K ++Q ++FT T A E+L + +R A
Sbjct: 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA 274
Score = 324 (119.1 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 65/184 (35%), Positives = 107/184 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ ++F+AT ++ LA L P + + ++++ Q V+ + ++ KR+ L ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+G + V++F K GA+ LA+ L K G + +HG K Q R AL K G +LV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATD+A RG+DI+++ V+NY++ EDY HRIGRTGRA G A+S D+ L D+
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
Query: 1116 KQMM 1119
++++
Sbjct: 361 EKLL 364
Score = 324 (119.1 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 65/184 (35%), Positives = 107/184 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ ++F+AT ++ LA L P + + ++++ Q V+ + ++ KR+ L ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+G + V++F K GA+ LA+ L K G + +HG K Q R AL K G +LV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATD+A RG+DI+++ V+NY++ EDY HRIGRTGRA G A+S D+ L D+
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
Query: 1791 KQMM 1794
++++
Sbjct: 361 EKLL 364
Score = 167 (63.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 36/121 (29%), Positives = 64/121 (52%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ ++F+AT ++ LA L P + + ++++ Q V+ + ++ KR+ L ++
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMI 240
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+G + V++F K GA+ LA+ L K G + +HG K Q R AL K G +L+
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
Query: 362 A 362
A
Sbjct: 301 A 301
Score = 48 (22.0 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRA G A+S D+ L D+++++
Sbjct: 336 TGRAAATGEALSLVCVDEHKLLRDIEKLL 364
Score = 42 (19.8 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTATMPPA---VERLARSYLRRPA 961
D + + +LL++ K ++Q ++FT T A E+L + +R A
Sbjct: 228 DKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA 274
Score = 42 (19.8 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTATMPPA---VERLARSYLRRPA 1636
D + + +LL++ K ++Q ++FT T A E+L + +R A
Sbjct: 228 DKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAA 274
Score = 38 (18.4 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 18/89 (20%), Positives = 35/89 (39%)
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLME-VLNRGVKKPVIIFVNQKKG--ADVLAKGLE 1021
IG G+ E + + ++ K + +E +L + + + I A+ + G +
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ 392
Query: 1022 KLGYNACTLHGGKGQEQRELALNSLKGGS 1050
+ G GG+GQ+Q K S
Sbjct: 393 QRGGGGRGQGGGRGQQQPRRGEGGAKSAS 421
Score = 38 (18.4 bits), Expect = 1.8e-34, Sum P(3) = 1.8e-34
Identities = 18/89 (20%), Positives = 35/89 (39%)
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRKKLME-VLNRGVKKPVIIFVNQKKG--ADVLAKGLE 1696
IG G+ E + + ++ K + +E +L + + + I A+ + G +
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ 392
Query: 1697 KLGYNACTLHGGKGQEQRELALNSLKGGS 1725
+ G GG+GQ+Q K S
Sbjct: 393 QRGGGGRGQGGGRGQQQPRRGEGGAKSAS 421
Score = 38 (18.4 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 18/89 (20%), Positives = 35/89 (39%)
Query: 271 IGSVGKPTERIEQIVYILSEQDKRKKLME-VLNRGVKKPVIIFVNQKKG--ADVLAKGLE 327
IG G+ E + + ++ K + +E +L + + + I A+ + G +
Sbjct: 333 IGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ 392
Query: 328 KLGYNACTLHGGKGQEQRELALNSLKGGS 356
+ G GG+GQ+Q K S
Sbjct: 393 QRGGGGRGQGGGRGQQQPRRGEGGAKSAS 421
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 367 (134.2 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 75/186 (40%), Positives = 116/186 (62%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q + + + +K+ +++
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILD 436
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+L+ I+F K+ AD LA L G+ A +HG + Q +RE AL + K G+ I
Sbjct: 437 LLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPI 496
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
LVAT VA RG+DI +VS VINYD+ I+DY HRIGRTGRAG G+A +F +++ ++
Sbjct: 497 LVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVK 556
Query: 1114 DLKQMM 1119
L +++
Sbjct: 557 GLIELL 562
Score = 367 (134.2 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 75/186 (40%), Positives = 116/186 (62%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q + + + +K+ +++
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILD 436
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+L+ I+F K+ AD LA L G+ A +HG + Q +RE AL + K G+ I
Sbjct: 437 LLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPI 496
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVAT VA RG+DI +VS VINYD+ I+DY HRIGRTGRAG G+A +F +++ ++
Sbjct: 497 LVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVK 556
Query: 1789 DLKQMM 1794
L +++
Sbjct: 557 GLIELL 562
Score = 360 (131.8 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 76/200 (38%), Positives = 118/200 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + G KVP+P+ ++ L ++E I+ + +PTP+Q+ ++PI RD++
Sbjct: 170 DDIPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMAC 229
Query: 772 AETGSGKTLAFLLPLLV--WIQSLPKIARMEDADQG----PYAIIMAPTRELAQQIEEET 825
A+TGSGKT FL P+L +++ + A P ++MAPTREL QI EE+
Sbjct: 230 AQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEES 289
Query: 826 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 885
KF +R +V GG +Q + GC++++ATPGRL D+L+ + L Y+VL
Sbjct: 290 KKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVL 349
Query: 886 DEADRMIDMGFEPDVQKILE 905
DEADRM+DMGFEP ++ I+E
Sbjct: 350 DEADRMLDMGFEPQIRYIVE 369
Score = 360 (131.8 bits), Expect = 1.6e-62, Sum P(2) = 1.6e-62
Identities = 76/200 (38%), Positives = 118/200 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + G KVP+P+ ++ L ++E I+ + +PTP+Q+ ++PI RD++
Sbjct: 170 DDIPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMAC 229
Query: 1447 AETGSGKTLAFLLPLLV--WIQSLPKIARMEDADQG----PYAIIMAPTRELAQQIEEET 1500
A+TGSGKT FL P+L +++ + A P ++MAPTREL QI EE+
Sbjct: 230 AQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEES 289
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVL 1560
KF +R +V GG +Q + GC++++ATPGRL D+L+ + L Y+VL
Sbjct: 290 KKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVL 349
Query: 1561 DEADRMIDMGFEPDVQKILE 1580
DEADRM+DMGFEP ++ I+E
Sbjct: 350 DEADRMLDMGFEPQIRYIVE 369
Score = 319 (117.4 bits), Expect = 4.3e-58, Sum P(3) = 4.3e-58
Identities = 67/164 (40%), Positives = 100/164 (60%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV--WIQSLPKIARMEDADQG 64
+ +PTP+Q+ ++PI RD++ A+TGSGKT FL P+L +++ + A
Sbjct: 206 FTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSS 265
Query: 65 ----PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P ++MAPTREL QI EE+ KF +R +V GG +Q + GC++++A
Sbjct: 266 HKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVA 325
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
TPGRL D+L+ + L Y+VLDEADRM+DMGFEP ++ I+E
Sbjct: 326 TPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVE 369
Score = 199 (75.1 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q + + + +K+ +++
Sbjct: 377 KDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILD 436
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+L+ I+F K+ AD LA L G+ A +HG + Q +RE AL + K G+ I
Sbjct: 437 LLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPI 496
Query: 360 LMA 362
L+A
Sbjct: 497 LVA 499
Score = 50 (22.7 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG G+A +F +++ ++ L +++
Sbjct: 534 TGRAGNVGIATAFFNRNNKNVVKGLIELL 562
Score = 46 (21.3 bits), Expect = 4.3e-58, Sum P(3) = 4.3e-58
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 193 KYRQTVMFTATMP 205
K RQT+MF+AT P
Sbjct: 377 KDRQTLMFSATFP 389
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 386 (140.9 bits), Expect = 2.0e-62, Sum P(2) = 2.0e-62
Identities = 88/214 (41%), Positives = 138/214 (64%)
Query: 699 LDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAE 750
+ EM +WR +E+++IT +K G+ +P P +K+A P ++L+ I ++G +
Sbjct: 188 MSEMQVINWR--KENFNITCDDLKSGEKRLIPKPTCRFKDAFQQYP-DLLKSIIRVGIVK 244
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 810
PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P I+R + GP ++
Sbjct: 245 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP-ISR--EQRNGPGMLV 301
Query: 811 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 870
+ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IATPGRL D+
Sbjct: 302 LTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQ 360
Query: 871 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
N + L TY+V+DEAD+M+DM FEP ++KIL
Sbjct: 361 MNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 394
Score = 386 (140.9 bits), Expect = 2.0e-62, Sum P(2) = 2.0e-62
Identities = 88/214 (41%), Positives = 138/214 (64%)
Query: 1374 LDEMTERDWRIFREDYSIT---IKGGK---VPDPVRNWKEA--SLPTEILEIIEKIGYAE 1425
+ EM +WR +E+++IT +K G+ +P P +K+A P ++L+ I ++G +
Sbjct: 188 MSEMQVINWR--KENFNITCDDLKSGEKRLIPKPTCRFKDAFQQYP-DLLKSIIRVGIVK 244
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 1485
PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P I+R + GP ++
Sbjct: 245 PTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP-ISR--EQRNGPGMLV 301
Query: 1486 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 1545
+ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IATPGRL D+
Sbjct: 302 LTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQ 360
Query: 1546 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
N + L TY+V+DEAD+M+DM FEP ++KIL
Sbjct: 361 MNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 394
Score = 347 (127.2 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 73/162 (45%), Positives = 109/162 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P I+R +
Sbjct: 237 IIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQP-ISR--EQ 293
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IAT
Sbjct: 294 RNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIAT 352
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL D+ N + L TY+V+DEAD+M+DM FEP ++KIL
Sbjct: 353 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 394
Score = 336 (123.3 bits), Expect = 2.0e-62, Sum P(2) = 2.0e-62
Identities = 92/285 (32%), Positives = 147/285 (51%)
Query: 1558 IVLDEADRMIDMGFEPDVQ-KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616
I++ R+ D+ V + + Y+ V + D E E ++ + RQTVM
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYL-VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMT 406
Query: 1617 TATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLME-VLNRGV 1674
+AT P V +LA SYL+ P VY+G++ ++Q + + +E++KR E V N
Sbjct: 407 SATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSP 466
Query: 1675 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1734
VI+FV+QK AD L+ G +A +LHG Q +E A+ K G+ IL+ TD+
Sbjct: 467 NDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDI 526
Query: 1735 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
RG+D+ DV+ V NYD ++I+ Y HR+G GR GK G +V+ T+ DS + +L +++
Sbjct: 527 VSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKIL 586
Query: 1795 ISSPVSTCPPEL--------LNHPDAQHKPGTVMVPKKRREEKIF 1831
+ S P +L LN +H+ P +RR+E F
Sbjct: 587 DRANQSV-PEDLVVMAEQYKLNQ-QKRHRETRSRKPGQRRKEFYF 629
Score = 333 (122.3 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 81/240 (33%), Positives = 130/240 (54%)
Query: 883 IVLDEADRMIDMGFEPDVQ-KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
I++ R+ D+ V + + Y+ V + D E E ++ + RQTVM
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYL-VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMT 406
Query: 942 TATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLME-VLNRGV 999
+AT P V +LA SYL+ P VY+G++ ++Q + + +E++KR E V N
Sbjct: 407 SATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSP 466
Query: 1000 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1059
VI+FV+QK AD L+ G +A +LHG Q +E A+ K G+ IL+ TD+
Sbjct: 467 NDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDI 526
Query: 1060 AGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
RG+D+ DV+ V NYD ++I+ Y HR+G GR GK G +V+ T+ DS + +L +++
Sbjct: 527 VSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKIL 586
Score = 185 (70.2 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 46/122 (37%), Positives = 68/122 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK-PTERIEQIVYILSEQDKRKKLME- 299
RQTVM +AT P V +LA SYL+ P VY+G++ ++Q + + +E++KR E
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEF 460
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
V N VI+FV+QK AD L+ G +A +LHG Q +E A+ K G+ I
Sbjct: 461 VENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKI 520
Query: 360 LM 361
L+
Sbjct: 521 LI 522
Score = 49 (22.3 bits), Expect = 2.1e-42, Sum P(3) = 2.1e-42
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
GR GK G +V+ T+ DS + +L +++ + S P +L+
Sbjct: 559 GRTGKTGTSVTLITQRDSKMAGELIKILDRANQSV-PEDLV 598
Score = 44 (20.5 bits), Expect = 7.0e-42, Sum P(3) = 7.0e-42
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 631 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 662
H+V + GR G + + SK GE+++
Sbjct: 553 HRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584
Score = 44 (20.5 bits), Expect = 7.0e-42, Sum P(3) = 7.0e-42
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1306 HQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLE 1337
H+V + GR G + + SK GE+++
Sbjct: 553 HRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 142 IVLDEADRMIDMGFEPDVQ-KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 200
I++ R+ D+ V + + Y+ V + D E E ++ + RQTVM
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYL-VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMT 406
Query: 201 TATMP 205
+AT P
Sbjct: 407 SATWP 411
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 337 (123.7 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 70/199 (35%), Positives = 113/199 (56%)
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980
D K+L N K RQ ++F+AT AV++LA + +P + + + Q+VY
Sbjct: 168 DIQKILQAVNKK---RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVY 224
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ ++ KR+ L E++ + + V++F + AD L K L G + +HG K Q R
Sbjct: 225 PVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRR 284
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
AL G +LVAT+VA RG+DI + V+N+D+ EDY HRIGRTGRAGK G+A
Sbjct: 285 RALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVA 344
Query: 1101 VSFCTKDDSHLFYDLKQMM 1119
+SF ++++ D+++++
Sbjct: 345 ISFVSREEERTLADIEKLI 363
Score = 337 (123.7 bits), Expect = 4.8e-61, Sum P(2) = 4.8e-61
Identities = 70/199 (35%), Positives = 113/199 (56%)
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 1655
D K+L N K RQ ++F+AT AV++LA + +P + + + Q+VY
Sbjct: 168 DIQKILQAVNKK---RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVY 224
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ ++ KR+ L E++ + + V++F + AD L K L G + +HG K Q R
Sbjct: 225 PVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRR 284
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
AL G +LVAT+VA RG+DI + V+N+D+ EDY HRIGRTGRAGK G+A
Sbjct: 285 RALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVA 344
Query: 1776 VSFCTKDDSHLFYDLKQMM 1794
+SF ++++ D+++++
Sbjct: 345 ISFVSREEERTLADIEKLI 363
Score = 336 (123.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 102/317 (32%), Positives = 155/317 (48%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I GY + TPIQ+QAIP + +D++ A+TG+GKT AF LP+L + P E
Sbjct: 16 ISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPS----ETL 71
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+ PTRELA Q+ E + L + + GG+ E Q +L+ G +I++AT
Sbjct: 72 KSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVAT 131
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL++ L L L+ ++VLDEADRM+DMGF D+QKIL+ N K +
Sbjct: 132 PGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ---AVNKKR-------Q 181
Query: 182 NKLL-ANYNSK-KKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENK--LLANYNS 237
N L A ++S KK +M + A + + E K LL+
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISAD-KQNTTADTVSQVVYPVEQRRKRELLSELIG 240
Query: 238 KKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
KK ++Q ++FTAT A + L P+ V G + + R + +S + +
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRR-RALREFVSGKVRVLV 299
Query: 297 LMEVLNRGVKKPVIIFV 313
EV RG+ P + +V
Sbjct: 300 ATEVAARGLDIPSLEYV 316
Score = 334 (122.6 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
EIL I GY + TPIQ+QAIP + +D++ A+TG+GKT AF LP+L + P
Sbjct: 11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPS-- 68
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 857
E +I+ PTRELA Q+ E + L + + GG+ E Q +L+ G +
Sbjct: 69 --ETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGAD 126
Query: 858 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
I++ATPGRL++ L L L+ ++VLDEADRM+DMGF D+QKIL+
Sbjct: 127 IIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ 174
Score = 334 (122.6 bits), Expect = 4.8e-61, Sum P(2) = 4.8e-61
Identities = 71/168 (42%), Positives = 101/168 (60%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
EIL I GY + TPIQ+QAIP + +D++ A+TG+GKT AF LP+L + P
Sbjct: 11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPS-- 68
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 1532
E +I+ PTRELA Q+ E + L + + GG+ E Q +L+ G +
Sbjct: 69 --ETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGAD 126
Query: 1533 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
I++ATPGRL++ L L L+ ++VLDEADRM+DMGF D+QKIL+
Sbjct: 127 IIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ 174
Score = 163 (62.4 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 40/136 (29%), Positives = 67/136 (49%)
Query: 227 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 286
D K+L N K RQ ++F+AT AV++LA + +P + + + Q+VY
Sbjct: 168 DIQKILQAVNKK---RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVY 224
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
+ ++ KR+ L E++ + + V++F + AD L K L G + +HG K Q R
Sbjct: 225 PVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRR 284
Query: 347 LALNSLKGGSKDILMA 362
AL G +L+A
Sbjct: 285 RALREFVSGKVRVLVA 300
Score = 71 (30.1 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAGK G+A+SF ++++ D+++++
Sbjct: 335 TGRAGKSGVAISFVSREEERTLADIEKLI 363
Score = 38 (18.4 bits), Expect = 7.8e-30, Sum P(2) = 7.8e-30
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 341 GQEQRELALNSLKGGSKDILM 361
GQ+ R + + + GS+D+L+
Sbjct: 364 GQKIRRITVPGYEVGSRDLLL 384
Score = 37 (18.1 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1710 GQEQRELALNSLKGGSKDILV 1730
GQ+ R + + + GS+D+L+
Sbjct: 364 GQKIRRITVPGYEVGSRDLLL 384
Score = 37 (18.1 bits), Expect = 9.9e-30, Sum P(2) = 9.9e-30
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 1035 GQEQRELALNSLKGGSKDILV 1055
GQ+ R + + + GS+D+L+
Sbjct: 364 GQKIRRITVPGYEVGSRDLLL 384
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 369 (135.0 bits), Expect = 4.2e-62, Sum P(2) = 4.2e-62
Identities = 80/211 (37%), Positives = 125/211 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + + GG + +PV + L + +L+ I+ GY +PTP+Q+ +IPI RD++
Sbjct: 154 DDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMAC 212
Query: 772 AETGSGKTLAFLLPLL-VWIQSLPKIARME-DADQG-------PYAIIMAPTRELAQQIE 822
A+TGSGKT FL P+L + P ++ DA G P +I+APTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
EE+ KF +R V GG Q ++ GC+++ ATPGRL+D+++ + L +
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKF 332
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
+VLDEADRM+DMGFEP ++ I+E +T+++
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVE 363
Score = 369 (135.0 bits), Expect = 4.2e-62, Sum P(2) = 4.2e-62
Identities = 80/211 (37%), Positives = 125/211 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + + GG + +PV + L + +L+ I+ GY +PTP+Q+ +IPI RD++
Sbjct: 154 DDIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMAC 212
Query: 1447 AETGSGKTLAFLLPLL-VWIQSLPKIARME-DADQG-------PYAIIMAPTRELAQQIE 1497
A+TGSGKT FL P+L + P ++ DA G P +I+APTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
EE+ KF +R V GG Q ++ GC+++ ATPGRL+D+++ + L +
Sbjct: 273 EESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKF 332
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
+VLDEADRM+DMGFEP ++ I+E +T+++
Sbjct: 333 LVLDEADRMLDMGFEPQIRHIVEGADMTSVE 363
Score = 352 (129.0 bits), Expect = 4.2e-62, Sum P(2) = 4.2e-62
Identities = 77/198 (38%), Positives = 120/198 (60%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q V + + +KR L+++L
Sbjct: 365 RQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDIL 424
Query: 1671 NRGVKKPV-IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729
+ + + +IFV K+ AD L L + A ++HG + Q +RE AL + G I+
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484
Query: 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789
VAT VA RG+DI +V+ VINYD+ I+DY HRIGRTGRAG G AV+F +++ + +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKE 544
Query: 1790 LKQMMISSPVSTCPPELL 1807
L +++ + CP L+
Sbjct: 545 LIELLQEAN-QECPSFLI 561
Score = 348 (127.6 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 74/185 (40%), Positives = 115/185 (62%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q V + + +KR L+++L
Sbjct: 365 RQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDIL 424
Query: 996 NRGVKKPV-IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054
+ + + +IFV K+ AD L L + A ++HG + Q +RE AL + G I+
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484
Query: 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114
VAT VA RG+DI +V+ VINYD+ I+DY HRIGRTGRAG G AV+F +++ + +
Sbjct: 485 VATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKE 544
Query: 1115 LKQMM 1119
L +++
Sbjct: 545 LIELL 549
Score = 334 (122.6 bits), Expect = 5.5e-58, Sum P(3) = 5.5e-58
Identities = 73/180 (40%), Positives = 109/180 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL-VWIQSLPKIARME- 59
I+ GY +PTP+Q+ +IPI RD++ A+TGSGKT FL P+L + P ++
Sbjct: 184 IKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQ 243
Query: 60 DADQG-------PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
DA G P +I+APTREL QI EE+ KF +R V GG Q ++
Sbjct: 244 DAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQID 303
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 172
GC+++ ATPGRL+D+++ + L ++VLDEADRM+DMGFEP ++ I+E +T+++
Sbjct: 304 QGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVE 363
Score = 183 (69.5 bits), Expect = 1.9e-41, Sum P(4) = 1.9e-41
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+MF+AT P ++ LAR +L+ + +G VG +E I Q V + + +KR L+++L
Sbjct: 365 RQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDIL 424
Query: 302 NRGVKKPV-IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ + + +IFV K+ AD L L + A ++HG + Q +RE AL + G I+
Sbjct: 425 HTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIM 484
Query: 361 MA 362
+A
Sbjct: 485 VA 486
Score = 55 (24.4 bits), Expect = 1.9e-41, Sum P(4) = 1.9e-41
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
TGRAG G AV+F +++ + +L +++ + CP L+
Sbjct: 521 TGRAGNTGQAVAFFNRNNKGIAKELIELLQEAN-QECPSFLI 561
Score = 44 (20.5 bits), Expect = 5.5e-58, Sum P(3) = 5.5e-58
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 365 RQTLMFSATFP 375
Score = 41 (19.5 bits), Expect = 5.4e-40, Sum P(4) = 5.4e-40
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 715 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 773
++ +G +P+ V + LPT+I + + +IG QA+ NR+ G+A+
Sbjct: 488 AVASRGLDIPN-VTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAV--AFFNRNNKGIAK 543
Score = 41 (19.5 bits), Expect = 5.4e-40, Sum P(4) = 5.4e-40
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAE 1448
++ +G +P+ V + LPT+I + + +IG QA+ NR+ G+A+
Sbjct: 488 AVASRGLDIPN-VTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAV--AFFNRNNKGIAK 543
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 367 (134.2 bits), Expect = 7.2e-62, Sum P(2) = 7.2e-62
Identities = 77/194 (39%), Positives = 116/194 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + + G VP + ++EA+L + + + K GY + TPIQ+ +IPI + RD++
Sbjct: 270 DDIVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMAC 329
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP+L + + + P AII+APTREL QI + KF
Sbjct: 330 AQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYG 389
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
+R V++ GG ++ GC I+ ATPGRL+DV+ + L + Y+VLDEADRM
Sbjct: 390 TCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRM 449
Query: 1567 IDMGFEPDVQKILE 1580
+DMGF D++ +L+
Sbjct: 450 LDMGFREDIENLLK 463
Score = 367 (134.2 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 77/194 (39%), Positives = 116/194 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + + G VP + ++EA+L + + + K GY + TPIQ+ +IPI + RD++
Sbjct: 270 DDIVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMAC 329
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP+L + + + P AII+APTREL QI + KF
Sbjct: 330 AQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYG 389
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
+R V++ GG ++ GC I+ ATPGRL+DV+ + L + Y+VLDEADRM
Sbjct: 390 TCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRM 449
Query: 892 IDMGFEPDVQKILE 905
+DMGF D++ +L+
Sbjct: 450 LDMGFREDIENLLK 463
Score = 356 (130.4 bits), Expect = 7.2e-62, Sum P(2) = 7.2e-62
Identities = 81/193 (41%), Positives = 118/193 (61%)
Query: 1595 ED-ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQ 1652
ED EN L ++ K+ RQT+MF+AT P +++ LAR L+ V +G VG +EQ
Sbjct: 456 EDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQ 515
Query: 1653 IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1712
+V + E K+ KLME+L + ++FV KK AD +A L + + ++HG + Q+
Sbjct: 516 MVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQK 575
Query: 1713 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1772
+RE AL + G ++VAT VA RG+DI++VS VIN+D+ I++Y HRIGRTGR G
Sbjct: 576 ERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNT 635
Query: 1773 GLAVSFCTK--DD 1783
G A+SF K DD
Sbjct: 636 GRAISFFDKRGDD 648
Score = 356 (130.4 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 81/193 (41%), Positives = 118/193 (61%)
Query: 920 ED-ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQ 977
ED EN L ++ K+ RQT+MF+AT P +++ LAR L+ V +G VG +EQ
Sbjct: 456 EDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQ 515
Query: 978 IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 1037
+V + E K+ KLME+L + ++FV KK AD +A L + + ++HG + Q+
Sbjct: 516 MVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQK 575
Query: 1038 QRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKE 1097
+RE AL + G ++VAT VA RG+DI++VS VIN+D+ I++Y HRIGRTGR G
Sbjct: 576 ERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNT 635
Query: 1098 GLAVSFCTK--DD 1108
G A+SF K DD
Sbjct: 636 GRAISFFDKRGDD 648
Score = 332 (121.9 bits), Expect = 9.2e-58, Sum P(3) = 9.2e-58
Identities = 70/161 (43%), Positives = 99/161 (61%)
Query: 4 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 63
K GY + TPIQ+ +IPI + RD++ A+TGSGKT AFLLP+L + + +
Sbjct: 303 KSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLK 362
Query: 64 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
P AII+APTREL QI + KF +R V++ GG ++ GC I+ ATPG
Sbjct: 363 EPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPG 422
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
RL+DV+ + L + Y+VLDEADRM+DMGF D++ +L+
Sbjct: 423 RLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLK 463
Score = 198 (74.8 bits), Expect = 4.5e-41, Sum P(3) = 4.5e-41
Identities = 49/139 (35%), Positives = 79/139 (56%)
Query: 226 ED-ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQ 283
ED EN L ++ K+ RQT+MF+AT P +++ LAR L+ V +G VG +EQ
Sbjct: 456 EDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQ 515
Query: 284 IVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 343
+V + E K+ KLME+L + ++FV KK AD +A L + + ++HG + Q+
Sbjct: 516 MVIEVDEFGKKDKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQK 575
Query: 344 QRELALNSLKGGSKDILMA 362
+RE AL + G +++A
Sbjct: 576 ERETALRDFRTGQCPVIVA 594
Score = 64 (27.6 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 179 ED-ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPD 221
ED EN L ++ K+ RQT+MF+AT P + ++ + LKPD
Sbjct: 456 EDIENLLKSSGMPSKEERQTLMFSATFPSS--IQSLAREILKPD 497
Score = 45 (20.9 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 1125 TGRAGKEGLAVSFCTK--DD 1142
TGR G G A+SF K DD
Sbjct: 629 TGRCGNTGRAISFFDKRGDD 648
Score = 38 (18.4 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 331
++EV V P I+ + D LAK + K GY
Sbjct: 273 VVEVSGSDVP-PAILTFEEANLCDSLAKNVCKSGY 306
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 361 (132.1 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 79/199 (39%), Positives = 119/199 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
++ ++ + G P P+ ++EA+ + + I K GY++ TP+Q+ +IP+ RD++
Sbjct: 151 DECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSC 210
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP++ + A Q P II+APTREL QI E KF
Sbjct: 211 AQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG 270
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
IR V++ GG ++ GC I+ ATPGRL+D++E + L + Y+VLDEADRM
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 892 IDMGFEPDVQKILEY--MP 908
+DMGF D++K++ Y MP
Sbjct: 331 LDMGFGLDMKKLISYPEMP 349
Score = 361 (132.1 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 79/199 (39%), Positives = 119/199 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
++ ++ + G P P+ ++EA+ + + I K GY++ TP+Q+ +IP+ RD++
Sbjct: 151 DECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSC 210
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP++ + A Q P II+APTREL QI E KF
Sbjct: 211 AQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG 270
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
IR V++ GG ++ GC I+ ATPGRL+D++E + L + Y+VLDEADRM
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 1567 IDMGFEPDVQKILEY--MP 1583
+DMGF D++K++ Y MP
Sbjct: 331 LDMGFGLDMKKLISYPEMP 349
Score = 348 (127.6 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 81/200 (40%), Positives = 117/200 (58%)
Query: 924 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 980
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
+AL + G ILVAT VA RG+DI++V VIN+D+ +IEDY HRIGRTGR G G A
Sbjct: 460 IALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKA 519
Query: 1101 VSFCT-KDDSHLFYDLKQMM 1119
VSF + D HL L +++
Sbjct: 520 VSFFDDQSDGHLVQSLLKVL 539
Score = 348 (127.6 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 81/200 (40%), Positives = 117/200 (58%)
Query: 1599 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 1655
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
+AL + G ILVAT VA RG+DI++V VIN+D+ +IEDY HRIGRTGR G G A
Sbjct: 460 IALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKA 519
Query: 1776 VSFCT-KDDSHLFYDLKQMM 1794
VSF + D HL L +++
Sbjct: 520 VSFFDDQSDGHLVQSLLKVL 539
Score = 340 (124.7 bits), Expect = 3.5e-59, Sum P(2) = 3.5e-59
Identities = 74/168 (44%), Positives = 103/168 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY++ TP+Q+ +IP+ RD++ A+TGSGKT AFLLP++ + A
Sbjct: 182 ISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQK 241
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF IR V++ GG ++ GC I+ AT
Sbjct: 242 QQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCAT 301
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY--MP 167
PGRL+D++E + L + Y+VLDEADRM+DMGF D++K++ Y MP
Sbjct: 302 PGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMP 349
Score = 176 (67.0 bits), Expect = 4.1e-42, Sum P(3) = 4.1e-42
Identities = 46/136 (33%), Positives = 73/136 (53%)
Query: 230 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 286
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 347 LALNSLKGGSKDILMA 362
+AL + G IL+A
Sbjct: 460 IALRDFRSGKCQILVA 475
Score = 54 (24.1 bits), Expect = 4.1e-42, Sum P(3) = 4.1e-42
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G AVSF + D HL L +++
Sbjct: 510 TGRCGNTGKAVSFFDDQSDGHLVQSLLKVL 539
Score = 47 (21.6 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 183 KLLANYNS--KKKYRQTVMFTATMP 205
K L +Y K RQT+MF+AT P
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFP 364
Score = 39 (18.8 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 308 PVIIFVNQKKGADVLAKGLEKLGYNACT 335
P++ F + A L K + K GY+ T
Sbjct: 165 PLLAF-EEANFAQTLRKNISKTGYSKLT 191
Score = 39 (18.8 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACT 1029
P++ F + A L K + K GY+ T
Sbjct: 165 PLLAF-EEANFAQTLRKNISKTGYSKLT 191
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 345 (126.5 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 73/175 (41%), Positives = 111/175 (63%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL T++++ + ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L
Sbjct: 7 SLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLL 63
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + A + A+++ PTRELA Q+++ K+ IR + GG+S E Q
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFN 123
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +++IATPGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 124 AGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 345 (126.5 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 73/175 (41%), Positives = 111/175 (63%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL T++++ + ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L
Sbjct: 7 SLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLL 63
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + A + A+++ PTRELA Q+++ K+ IR + GG+S E Q
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFN 123
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +++IATPGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 124 AGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 328 (120.5 bits), Expect = 9.5e-60, Sum P(3) = 9.5e-60
Identities = 70/166 (42%), Positives = 104/166 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L + + A
Sbjct: 16 LAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLLMADNQSDHA 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELA Q+++ K+ IR + GG+S E Q G +++IAT
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIAT 132
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 133 PGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 317 (116.6 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 68/185 (36%), Positives = 108/185 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 996 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114
VATDVA RG+DI ++ VIN+++ EDY HRIGRTGRAG GLA++ +++D+ L +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 1115 LKQMM 1119
++ ++
Sbjct: 360 VETLL 364
Score = 317 (116.6 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 68/185 (36%), Positives = 108/185 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 1671 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789
VATDVA RG+DI ++ VIN+++ EDY HRIGRTGRAG GLA++ +++D+ L +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 1790 LKQMM 1794
++ ++
Sbjct: 360 VETLL 364
Score = 154 (59.3 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 302 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 361 MA 362
+A
Sbjct: 300 VA 301
Score = 58 (25.5 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG GLA++ +++D+ L +++ ++
Sbjct: 336 TGRAGSAGLAITLFSQEDALLLEEVETLL 364
Score = 41 (19.5 bits), Expect = 5.5e-31, Sum P(3) = 5.5e-31
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 195 RQTVMFTATMPPA-----KILEYMP--VTNLKPDTEDAEDENKLLANYNSKK 239
RQT++F+AT+ + K L P + KP+T A+ E ++ A + +K
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Score = 40 (19.1 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1558 IVLDEADRMIDM--------GFEPDVQKIL 1579
++L+E + ++D GFEPD K+L
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKML 384
Score = 40 (19.1 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 883 IVLDEADRMIDM--------GFEPDVQKIL 904
++L+E + ++D GFEPD K+L
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKML 384
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 345 (126.5 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 73/175 (41%), Positives = 111/175 (63%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL T++++ + ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L
Sbjct: 7 SLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLL 63
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + A + A+++ PTRELA Q+++ K+ IR + GG+S E Q
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFN 123
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +++IATPGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 124 AGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 345 (126.5 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 73/175 (41%), Positives = 111/175 (63%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL T++++ + ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L
Sbjct: 7 SLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLL 63
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + A + A+++ PTRELA Q+++ K+ IR + GG+S E Q
Sbjct: 64 MADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFN 123
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +++IATPGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 124 AGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 328 (120.5 bits), Expect = 9.5e-60, Sum P(3) = 9.5e-60
Identities = 70/166 (42%), Positives = 104/166 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY +PTPIQ +AIP L +D++ A+TG+GKT AF LP+L Q L + + A
Sbjct: 16 LAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL---QLLMADNQSDHA 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELA Q+++ K+ IR + GG+S E Q G +++IAT
Sbjct: 73 AKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIAT 132
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D L L LNQ +V DEADRM+DMGF ++Q +L+ +P
Sbjct: 133 PGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP 178
Score = 317 (116.6 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 68/185 (36%), Positives = 108/185 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 996 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114
VATDVA RG+DI ++ VIN+++ EDY HRIGRTGRAG GLA++ +++D+ L +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 1115 LKQMM 1119
++ ++
Sbjct: 360 VETLL 364
Score = 317 (116.6 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 68/185 (36%), Positives = 108/185 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 1671 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789
VATDVA RG+DI ++ VIN+++ EDY HRIGRTGRAG GLA++ +++D+ L +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEE 359
Query: 1790 LKQMM 1794
++ ++
Sbjct: 360 VETLL 364
Score = 154 (59.3 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT+ ++ +++ LR P + + +IEQ VY + + D++ + + L
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHL 239
Query: 302 NRGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
R + V+IF K+G D L L KLG + HG Q RE L K G +L
Sbjct: 240 VRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 361 MA 362
+A
Sbjct: 300 VA 301
Score = 58 (25.5 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG GLA++ +++D+ L +++ ++
Sbjct: 336 TGRAGSAGLAITLFSQEDALLLEEVETLL 364
Score = 41 (19.5 bits), Expect = 5.5e-31, Sum P(3) = 5.5e-31
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 195 RQTVMFTATMPPA-----KILEYMP--VTNLKPDTEDAEDENKLLANYNSKK 239
RQT++F+AT+ + K L P + KP+T A+ E ++ A + +K
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRK 232
Score = 40 (19.1 bits), Expect = 1.5e-61, Sum P(3) = 1.5e-61
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1558 IVLDEADRMIDM--------GFEPDVQKIL 1579
++L+E + ++D GFEPD K+L
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKML 384
Score = 40 (19.1 bits), Expect = 1.0e-42, Sum P(3) = 1.0e-42
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 883 IVLDEADRMIDM--------GFEPDVQKIL 904
++L+E + ++D GFEPD K+L
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKML 384
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 334 (122.6 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 75/211 (35%), Positives = 117/211 (55%)
Query: 1605 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 1664
N+ +QT++F+AT+P ++ + + +L TV + K I Q+ Y L E +K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIE 228
Query: 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
L+ +LN + I+F KK D + + L GY A LHG Q +R + S K G
Sbjct: 229 GLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAG 288
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
++LVATDVA RG+DI DVS VIN+D+ ++ E Y HRIGRTGRAG+EG A++ +
Sbjct: 289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRER 348
Query: 1785 HLFYDLKQMMISSPVSTCPPELLNHPDAQHK 1815
L +++ + PE ++ +A+ K
Sbjct: 349 KLLKAIEEAINKRLKREILPEPVDLEEARFK 379
Score = 331 (121.6 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 70/173 (40%), Positives = 103/173 (59%)
Query: 930 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 989
N+ +QT++F+AT+P ++ + + +L TV + K I Q+ Y L E +K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIE 228
Query: 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
L+ +LN + I+F KK D + + L GY A LHG Q +R + S K G
Sbjct: 229 GLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAG 288
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
++LVATDVA RG+DI DVS VIN+D+ ++ E Y HRIGRTGRAG+EG A++
Sbjct: 289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAIT 341
Score = 323 (118.8 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 70/178 (39%), Positives = 109/178 (61%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
+ +K+ L T +L+ + +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L IQ R + A +I+ PTRELA Q+ +E K G L +R + V GG + E
Sbjct: 61 LQRIQ------RGKKAQ----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIE 110
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
Q LR G E+++ TPGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 323 (118.8 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 70/178 (39%), Positives = 109/178 (61%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
+ +K+ L T +L+ + +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L IQ R + A +I+ PTRELA Q+ +E K G L +R + V GG + E
Sbjct: 61 LQRIQ------RGKKAQ----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIE 110
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
Q LR G E+++ TPGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 305 (112.4 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
Identities = 66/162 (40%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+L IQ R + A
Sbjct: 17 VNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQ------RGKKA 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+ PTRELA Q+ +E K G L +R + V GG + E Q LR G E+++ T
Sbjct: 71 Q----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 171 (65.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 206 PAKILEYM-----PVTNLKPDTEDAEDE-------NKLLANYNSKKKYRQTVMFTATMPP 253
P +IL+++ P +K D DE + + A N+ +QT++F+AT+P
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPA 186
Query: 254 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 313
++ + + +L TV + K I Q+ Y L E +K + L+ +LN + I+F
Sbjct: 187 PIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFC 246
Query: 314 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
KK D + + L GY A LHG Q +R + S K G ++L+A
Sbjct: 247 RTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Score = 48 (22.0 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHK 1174
TGRAG+EG A++ + L +++ + PE ++ +A+ K
Sbjct: 330 TGRAGREGKAITLINYRERKLLKAIEEAINKRLKREILPEPVDLEEARFK 379
Score = 44 (20.5 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-Y---NACTLHGGKGQEQR 345
+++ + RG K V+I ++ A +A + KLG Y A ++GG+ E++
Sbjct: 60 VLQRIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQ 112
Score = 44 (20.5 bits), Expect = 3.5e-26, Sum P(3) = 3.5e-26
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 189 NSKKKYRQTVMFTATMP-PAKIL 210
N+ +QT++F+AT+P P K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTI 191
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 334 (122.6 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 75/211 (35%), Positives = 117/211 (55%)
Query: 1605 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 1664
N+ +QT++F+AT+P ++ + + +L TV + K I Q+ Y L E +K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIE 228
Query: 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
L+ +LN + I+F KK D + + L GY A LHG Q +R + S K G
Sbjct: 229 GLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAG 288
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
++LVATDVA RG+DI DVS VIN+D+ ++ E Y HRIGRTGRAG+EG A++ +
Sbjct: 289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRER 348
Query: 1785 HLFYDLKQMMISSPVSTCPPELLNHPDAQHK 1815
L +++ + PE ++ +A+ K
Sbjct: 349 KLLKAIEEAINKRLKREILPEPVDLEEARFK 379
Score = 331 (121.6 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 70/173 (40%), Positives = 103/173 (59%)
Query: 930 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 989
N+ +QT++F+AT+P ++ + + +L TV + K I Q+ Y L E +K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIE 228
Query: 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
L+ +LN + I+F KK D + + L GY A LHG Q +R + S K G
Sbjct: 229 GLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAG 288
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
++LVATDVA RG+DI DVS VIN+D+ ++ E Y HRIGRTGRAG+EG A++
Sbjct: 289 KTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAIT 341
Score = 323 (118.8 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 70/178 (39%), Positives = 109/178 (61%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
+ +K+ L T +L+ + +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
L IQ R + A +I+ PTRELA Q+ +E K G L +R + V GG + E
Sbjct: 61 LQRIQ------RGKKAQ----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIE 110
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
Q LR G E+++ TPGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 323 (118.8 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
Identities = 70/178 (39%), Positives = 109/178 (61%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
+ +K+ L T +L+ + +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
L IQ R + A +I+ PTRELA Q+ +E K G L +R + V GG + E
Sbjct: 61 LQRIQ------RGKKAQ----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIE 110
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
Q LR G E+++ TPGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 305 (112.4 bits), Expect = 1.2e-59, Sum P(3) = 1.2e-59
Identities = 66/162 (40%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ +G+ PTPIQ++AIP+ L+ +++G A TG+GKT A+LLP+L IQ R + A
Sbjct: 17 VNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQ------RGKKA 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+ PTRELA Q+ +E K G L +R + V GG + E Q LR G E+++ T
Sbjct: 71 Q----VLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGR++D + + + ++LDEAD M+DMGF D++ IL
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAIL 168
Score = 171 (65.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 48/169 (28%), Positives = 81/169 (47%)
Query: 206 PAKILEYM-----PVTNLKPDTEDAEDE-------NKLLANYNSKKKYRQTVMFTATMPP 253
P +IL+++ P +K D DE + + A N+ +QT++F+AT+P
Sbjct: 127 PGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPA 186
Query: 254 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 313
++ + + +L TV + K I Q+ Y L E +K + L+ +LN + I+F
Sbjct: 187 PIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFC 246
Query: 314 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
KK D + + L GY A LHG Q +R + S K G ++L+A
Sbjct: 247 RTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Score = 48 (22.0 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHK 1174
TGRAG+EG A++ + L +++ + PE ++ +A+ K
Sbjct: 330 TGRAGREGKAITLINYRERKLLKAIEEAINKRLKREILPEPVDLEEARFK 379
Score = 44 (20.5 bits), Expect = 1.9e-32, Sum P(3) = 1.9e-32
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG-Y---NACTLHGGKGQEQR 345
+++ + RG K V+I ++ A +A + KLG Y A ++GG+ E++
Sbjct: 60 VLQRIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQ 112
Score = 44 (20.5 bits), Expect = 3.5e-26, Sum P(3) = 3.5e-26
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 189 NSKKKYRQTVMFTATMP-PAKIL 210
N+ +QT++F+AT+P P K +
Sbjct: 169 NTLTNRQQTLLFSATLPAPIKTI 191
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 361 (132.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 79/199 (39%), Positives = 119/199 (59%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
++ ++ + G P P+ ++EA+ + + I K GY++ TP+Q+ +IP+ RD++
Sbjct: 151 DECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSC 210
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP++ + A Q P II+APTREL QI E KF
Sbjct: 211 AQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG 270
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
IR V++ GG ++ GC I+ ATPGRL+D++E + L + Y+VLDEADRM
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 892 IDMGFEPDVQKILEY--MP 908
+DMGF D++K++ Y MP
Sbjct: 331 LDMGFGLDMKKLISYPEMP 349
Score = 361 (132.1 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 79/199 (39%), Positives = 119/199 (59%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
++ ++ + G P P+ ++EA+ + + I K GY++ TP+Q+ +IP+ RD++
Sbjct: 151 DECAVEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSC 210
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP++ + A Q P II+APTREL QI E KF
Sbjct: 211 AQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG 270
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
IR V++ GG ++ GC I+ ATPGRL+D++E + L + Y+VLDEADRM
Sbjct: 271 TCIRPVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRM 330
Query: 1567 IDMGFEPDVQKILEY--MP 1583
+DMGF D++K++ Y MP
Sbjct: 331 LDMGFGLDMKKLISYPEMP 349
Score = 348 (127.6 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 81/200 (40%), Positives = 117/200 (58%)
Query: 924 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 980
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
+AL + G ILVAT VA RG+DI++V VIN+D+ +IEDY HRIGRTGR G G A
Sbjct: 460 IALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKA 519
Query: 1101 VSFCT-KDDSHLFYDLKQMM 1119
VSF + D HL L +++
Sbjct: 520 VSFFDDQSDGHLVQSLLKVL 539
Score = 348 (127.6 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 81/200 (40%), Positives = 117/200 (58%)
Query: 1599 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 1655
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
+AL + G ILVAT VA RG+DI++V VIN+D+ +IEDY HRIGRTGR G G A
Sbjct: 460 IALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKA 519
Query: 1776 VSFCT-KDDSHLFYDLKQMM 1794
VSF + D HL L +++
Sbjct: 520 VSFFDDQSDGHLVQSLLKVL 539
Score = 340 (124.7 bits), Expect = 6.6e-59, Sum P(2) = 6.6e-59
Identities = 74/168 (44%), Positives = 103/168 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY++ TP+Q+ +IP+ RD++ A+TGSGKT AFLLP++ + A
Sbjct: 182 ISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQK 241
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF IR V++ GG ++ GC I+ AT
Sbjct: 242 QQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQGCNILCAT 301
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY--MP 167
PGRL+D++E + L + Y+VLDEADRM+DMGF D++K++ Y MP
Sbjct: 302 PGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMP 349
Score = 176 (67.0 bits), Expect = 9.2e-42, Sum P(3) = 9.2e-42
Identities = 46/136 (33%), Positives = 73/136 (53%)
Query: 230 KLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVY 286
K L +Y K RQT+MF+AT P V+RLA +L+ + IG+ ++Q +
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNIL 399
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
+ KR KL+E+L + ++FV+ KK AD LA L + + ++HG + Q +RE
Sbjct: 400 QVPRLSKRDKLIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQRERE 459
Query: 347 LALNSLKGGSKDILMA 362
+AL + G IL+A
Sbjct: 460 IALRDFRSGKCQILVA 475
Score = 54 (24.1 bits), Expect = 9.2e-42, Sum P(3) = 9.2e-42
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G AVSF + D HL L +++
Sbjct: 510 TGRCGNTGKAVSFFDDQSDGHLVQSLLKVL 539
Score = 47 (21.6 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 183 KLLANYNS--KKKYRQTVMFTATMP 205
K L +Y K RQT+MF+AT P
Sbjct: 340 KKLISYPEMPSKDRRQTLMFSATFP 364
Score = 39 (18.8 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 308 PVIIFVNQKKGADVLAKGLEKLGYNACT 335
P++ F + A L K + K GY+ T
Sbjct: 165 PLLAF-EEANFAQTLRKNISKTGYSKLT 191
Score = 39 (18.8 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACT 1029
P++ F + A L K + K GY+ T
Sbjct: 165 PLLAF-EEANFAQTLRKNISKTGYSKLT 191
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 379 (138.5 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 76/193 (39%), Positives = 119/193 (61%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + + G +P + ++EA L + I + GY +PTP+Q+ +PI RD++
Sbjct: 165 DDILVDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMAC 224
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP+L + + A Q P A+I+APTREL QI +E KF
Sbjct: 225 AQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFG 284
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
+R V+V GG++ Q + GC ++ TPGRL+D++ + L++ ++VLDEADRM
Sbjct: 285 TCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRM 344
Query: 892 IDMGFEPDVQKIL 904
+DMGFEPD+++++
Sbjct: 345 LDMGFEPDMRRLV 357
Score = 379 (138.5 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 76/193 (39%), Positives = 119/193 (61%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + + G +P + ++EA L + I + GY +PTP+Q+ +PI RD++
Sbjct: 165 DDILVDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMAC 224
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP+L + + A Q P A+I+APTREL QI +E KF
Sbjct: 225 AQTGSGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFG 284
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
+R V+V GG++ Q + GC ++ TPGRL+D++ + L++ ++VLDEADRM
Sbjct: 285 TCVRPVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRM 344
Query: 1567 IDMGFEPDVQKIL 1579
+DMGFEPD+++++
Sbjct: 345 LDMGFEPDMRRLV 357
Score = 351 (128.6 bits), Expect = 3.1e-58, Sum P(3) = 3.1e-58
Identities = 70/162 (43%), Positives = 105/162 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + GY +PTP+Q+ +PI RD++ A+TGSGKT AFLLP+L + + A
Sbjct: 196 ISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 255
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P A+I+APTREL QI +E KF +R V+V GG++ Q + GC ++ T
Sbjct: 256 IQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGT 315
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L++ ++VLDEADRM+DMGFEPD+++++
Sbjct: 316 PGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLV 357
Score = 332 (121.9 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 74/181 (40%), Positives = 110/181 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG +EQ +++ +KR++L
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQL 424
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+++L + ++FV K+ AD +A L + ++HG + Q +RE AL + G
Sbjct: 425 LDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKC 484
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
+LVAT VA RG+DI DV V+N+D+ +I+DY HRIGRTGR G G AVSF D DS
Sbjct: 485 PVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQ 544
Query: 1111 L 1111
L
Sbjct: 545 L 545
Score = 332 (121.9 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 74/181 (40%), Positives = 110/181 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG +EQ +++ +KR++L
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQL 424
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+++L + ++FV K+ AD +A L + ++HG + Q +RE AL + G
Sbjct: 425 LDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKC 484
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
+LVAT VA RG+DI DV V+N+D+ +I+DY HRIGRTGR G G AVSF D DS
Sbjct: 485 PVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDPDVDSQ 544
Query: 1786 L 1786
L
Sbjct: 545 L 545
Score = 165 (63.1 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 40/125 (32%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG +EQ +++ +KR++L
Sbjct: 365 KEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQL 424
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+++L + ++FV K+ AD +A L + ++HG + Q +RE AL + G
Sbjct: 425 LDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKC 484
Query: 358 DILMA 362
+L+A
Sbjct: 485 PVLVA 489
Score = 50 (22.7 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHL 1145
TGR G G AVSF D DS L
Sbjct: 524 TGRCGNTGRAVSFYDPDVDSQL 545
Score = 48 (22.0 bits), Expect = 3.1e-58, Sum P(3) = 3.1e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 365 KEERQTLMFSATFP 378
Score = 47 (21.6 bits), Expect = 4.2e-32, Sum P(3) = 4.2e-32
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKK 933
E +P T++ D E E E K LA++ S K
Sbjct: 456 EKVPTTSIHGDREQRERE-KALADFRSGK 483
Score = 47 (21.6 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
E +P T++ D E E E K LA++ S K
Sbjct: 456 EKVPTTSIHGDREQRERE-KALADFRSGK 483
Score = 47 (21.6 bits), Expect = 1.4e-29, Sum P(4) = 1.4e-29
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 211 EYMPVTNLKPDTEDAEDENKLLANYNSKK 239
E +P T++ D E E E K LA++ S K
Sbjct: 456 EKVPTTSIHGDREQRERE-KALADFRSGK 483
Score = 47 (21.6 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 164 EYMPVTNLKPDTEDAEDENKLLANYNSKK 192
E +P T++ D E E E K LA++ S K
Sbjct: 456 EKVPTTSIHGDREQRERE-KALADFRSGK 483
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 363 (132.8 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 368
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 369 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 428
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 429 GFGPEMKKLI 438
Score = 363 (132.8 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 368
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 369 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 428
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 429 GFGPEMKKLI 438
Score = 352 (129.0 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
Identities = 78/206 (37%), Positives = 123/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 446 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKL 505
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 506 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 565
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF T+ D+H
Sbjct: 566 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNH 625
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 626 LAQPLVKVLSDAQQDVPAWLEEIAFS 651
Score = 350 (128.3 bits), Expect = 5.3e-61, Sum P(2) = 5.3e-61
Identities = 74/189 (39%), Positives = 117/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 446 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKL 505
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 506 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 565
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF T+ D+H
Sbjct: 566 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNH 625
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 626 LAQPLVKVL 634
Score = 342 (125.4 bits), Expect = 9.4e-59, Sum P(3) = 9.4e-59
Identities = 73/163 (44%), Positives = 104/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 277 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 336
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 337 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCA 395
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 396 TPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI 438
Score = 181 (68.8 bits), Expect = 4.8e-42, Sum P(3) = 4.8e-42
Identities = 41/125 (32%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 446 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKL 505
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 506 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 565
Query: 358 DILMA 362
+L+A
Sbjct: 566 PVLVA 570
Score = 58 (25.5 bits), Expect = 4.8e-42, Sum P(3) = 4.8e-42
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1125 TGRAGKEGLAVSFC-TKDDSHLFYDLKQMM 1153
TGR G G A+SF T+ D+HL L +++
Sbjct: 605 TGRCGNTGRAISFFDTESDNHLAQPLVKVL 634
Score = 46 (21.3 bits), Expect = 9.4e-59, Sum P(3) = 9.4e-59
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT++F+AT P
Sbjct: 446 KEQRQTLLFSATFP 459
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 364 (133.2 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 367
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 368 RAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 427
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 428 GFGPEMKKLI 437
Score = 364 (133.2 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 367
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 368 RAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 427
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 428 GFGPEMKKLI 437
Score = 352 (129.0 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 78/206 (37%), Positives = 122/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 445 KEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 504
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 505 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 564
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF D D+H
Sbjct: 565 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNH 624
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 625 LAQPLVKVLSDAQQDVPAWLEEIAFS 650
Score = 350 (128.3 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 74/189 (39%), Positives = 116/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 445 KEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 504
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 505 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 564
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF D D+H
Sbjct: 565 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNH 624
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 625 LAQPLVKVL 633
Score = 343 (125.8 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 73/163 (44%), Positives = 104/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 276 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 335
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 336 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQGCNILCA 394
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 395 TPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI 437
Score = 183 (69.5 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 41/125 (32%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 445 KEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 504
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 505 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 564
Query: 358 DILMA 362
+L+A
Sbjct: 565 PVLVA 569
Score = 56 (24.8 bits), Expect = 5.4e-42, Sum P(3) = 5.4e-42
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMM 1153
TGR G G A+SF D D+HL L +++
Sbjct: 604 TGRCGNTGRAISFFDTDSDNHLAQPLVKVL 633
Score = 46 (21.3 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT++F+AT P
Sbjct: 445 KEQRQTLLFSATFP 458
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 351 (128.6 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 73/178 (41%), Positives = 113/178 (63%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
++ + E++LP +L+ + + +P+PIQ P L RD+IG+A+TGSGKTLAF +P
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
++ + K P ++++PTRELA QI + + G P G++++ V GG S+
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
Q +R G +IVI TPGRL D++E+ L L+ +++VLDEADRM+DMGFE V+ IL
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL 290
Score = 351 (128.6 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 73/178 (41%), Positives = 113/178 (63%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
++ + E++LP +L+ + + +P+PIQ P L RD+IG+A+TGSGKTLAF +P
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
++ + K P ++++PTRELA QI + + G P G++++ V GG S+
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
Q +R G +IVI TPGRL D++E+ L L+ +++VLDEADRM+DMGFE V+ IL
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL 290
Score = 348 (127.6 bits), Expect = 1.9e-60, Sum P(2) = 1.9e-60
Identities = 85/213 (39%), Positives = 128/213 (60%)
Query: 1600 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYIL 1657
+L+N N K RQ VMF+AT P V +LA+ ++ P V IGSV + QI+ +L
Sbjct: 289 ILSNTN---KVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVL 345
Query: 1658 SEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
E+ + ++L+ +L ++ K V++F K A+ L + L++ G+ A ++HG K Q +R
Sbjct: 346 DERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSER 405
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
+L+ K GS +LVATDVA RG+DI DV +VINY + EDY HRIGRTGRAGK+G+
Sbjct: 406 TRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGV 465
Query: 1775 AVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1807
A +F T + L +L ++ + P +LL
Sbjct: 466 AHTFFTPLNKGLAGELVNVLREAG-QVVPADLL 497
Score = 346 (126.9 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 80/186 (43%), Positives = 117/186 (62%)
Query: 925 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYIL 982
+L+N N K RQ VMF+AT P V +LA+ ++ P V IGSV + QI+ +L
Sbjct: 289 ILSNTN---KVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVL 345
Query: 983 SEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
E+ + ++L+ +L ++ K V++F K A+ L + L++ G+ A ++HG K Q +R
Sbjct: 346 DERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSER 405
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
+L+ K GS +LVATDVA RG+DI DV +VINY + EDY HRIGRTGRAGK+G+
Sbjct: 406 TRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGV 465
Query: 1100 AVSFCT 1105
A +F T
Sbjct: 466 AHTFFT 471
Score = 335 (123.0 bits), Expect = 2.2e-59, Sum P(3) = 2.2e-59
Identities = 69/157 (43%), Positives = 101/157 (64%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ +P+PIQ P L RD+IG+A+TGSGKTLAF +P ++ + K P
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
++++PTRELA QI + + G P G++++ V GG S+ Q +R G +IVI TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 127 DVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
D++E+ L L+ +++VLDEADRM+DMGFE V+ IL
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL 290
Score = 178 (67.7 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 47/137 (34%), Positives = 79/137 (57%)
Query: 231 LLANYNSKKKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYIL 288
+L+N N K RQ VMF+AT P V +LA+ ++ P V IGSV + QI+ +L
Sbjct: 289 ILSNTN---KVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVL 345
Query: 289 SEQDKRKKLMEVL---NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
E+ + ++L+ +L ++ K V++F K A+ L + L++ G+ A ++HG K Q +R
Sbjct: 346 DERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSER 405
Query: 346 ELALNSLKGGSKDILMA 362
+L+ K GS +L+A
Sbjct: 406 TRSLSLFKEGSCPLLVA 422
Score = 52 (23.4 bits), Expect = 3.4e-61, Sum P(3) = 3.4e-61
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELL 1166
TGRAGK+G+A +F T + L +L ++ + P +LL
Sbjct: 457 TGRAGKKGVAHTFFTPLNKGLAGELVNVLREAG-QVVPADLL 497
Score = 48 (22.0 bits), Expect = 4.5e-28, Sum P(3) = 4.5e-28
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 184 LLANYNSKKKYRQTVMFTATMP 205
+L+N N K RQ VMF+AT P
Sbjct: 289 ILSNTN---KVRQMVMFSATWP 307
Score = 41 (19.5 bits), Expect = 9.2e-29, Sum P(3) = 9.2e-29
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 261 SYLRRPATVYIGSVGKPTERIEQIVYILSEQD--KRKKLMEVLNRGVKKPV-IIFVNQKK 317
S +R + IG+ G+ + IE V LS+ + +L+ G ++PV I N K
Sbjct: 236 SAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNK 295
Score = 37 (18.1 bits), Expect = 2.4e-28, Sum P(3) = 2.4e-28
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 319 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
+DVL + E G + ++GG + + A+ S
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRS 240
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 363 (132.8 bits), Expect = 5.6e-61, Sum P(2) = 5.6e-61
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 375
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 376 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 435
Query: 896 FEPDVQKIL 904
F P+++K++
Sbjct: 436 FGPEMKKLI 444
Score = 363 (132.8 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 375
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 376 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 435
Query: 1571 FEPDVQKIL 1579
F P+++K++
Sbjct: 436 FGPEMKKLI 444
Score = 351 (128.6 bits), Expect = 5.6e-61, Sum P(2) = 5.6e-61
Identities = 79/206 (38%), Positives = 122/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 452 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 511
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 512 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 571
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 572 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 631
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 632 LAQPLVKVLTDAQQDVPAWLEEIAFS 657
Score = 348 (127.6 bits), Expect = 1.2e-60, Sum P(2) = 1.2e-60
Identities = 75/189 (39%), Positives = 116/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 452 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 511
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 512 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 571
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 572 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 631
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 632 LAQPLVKVL 640
Score = 342 (125.4 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 73/162 (45%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L + A
Sbjct: 283 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 342
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ AT
Sbjct: 343 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 402
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 403 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 444
Score = 185 (70.2 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 43/125 (34%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 452 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 511
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 512 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 571
Query: 358 DILMA 362
+L+A
Sbjct: 572 PVLVA 576
Score = 52 (23.4 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + D+HL L +++
Sbjct: 611 TGRCGNTGRAISFFDLESDNHLAQPLVKVL 640
Score = 49 (22.3 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 452 KEQRQTLMFSATFP 465
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 363 (132.8 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 395
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 396 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 455
Query: 896 FEPDVQKIL 904
F P+++K++
Sbjct: 456 FGPEMKKLI 464
Score = 363 (132.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 395
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 396 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 455
Query: 1571 FEPDVQKIL 1579
F P+++K++
Sbjct: 456 FGPEMKKLI 464
Score = 351 (128.6 bits), Expect = 6.7e-61, Sum P(2) = 6.7e-61
Identities = 79/206 (38%), Positives = 122/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 472 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 531
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 532 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 591
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 592 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 651
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 652 LAQPLVKVLTDAQQDVPAWLEEIAFS 677
Score = 348 (127.6 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 75/189 (39%), Positives = 116/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 472 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 531
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 532 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 591
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 592 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 651
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 652 LAQPLVKVL 660
Score = 342 (125.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 73/162 (45%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L + A
Sbjct: 303 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 362
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ AT
Sbjct: 363 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 422
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 423 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 464
Score = 185 (70.2 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 43/125 (34%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 472 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 531
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 532 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 591
Query: 358 DILMA 362
+L+A
Sbjct: 592 PVLVA 596
Score = 52 (23.4 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + D+HL L +++
Sbjct: 631 TGRCGNTGRAISFFDLESDNHLAQPLVKVL 660
Score = 49 (22.3 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 472 KEQRQTLMFSATFP 485
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 363 (132.8 bits), Expect = 6.8e-61, Sum P(2) = 6.8e-61
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 396
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 397 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 456
Query: 896 FEPDVQKIL 904
F P+++K++
Sbjct: 457 FGPEMKKLI 465
Score = 363 (132.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 396
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 397 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 456
Query: 1571 FEPDVQKIL 1579
F P+++K++
Sbjct: 457 FGPEMKKLI 465
Score = 351 (128.6 bits), Expect = 6.8e-61, Sum P(2) = 6.8e-61
Identities = 79/206 (38%), Positives = 122/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 532
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 593 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 652
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 653 LAQPLVKVLTDAQQDVPAWLEEIAFS 678
Score = 348 (127.6 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 75/189 (39%), Positives = 116/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 532
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 593 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 652
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 653 LAQPLVKVL 661
Score = 342 (125.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 73/162 (45%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L + A
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKE 363
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ AT
Sbjct: 364 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 423
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 424 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 465
Score = 185 (70.2 bits), Expect = 1.5e-41, Sum P(3) = 1.5e-41
Identities = 43/125 (34%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q V + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKL 532
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 358 DILMA 362
+L+A
Sbjct: 593 PVLVA 597
Score = 52 (23.4 bits), Expect = 1.5e-41, Sum P(3) = 1.5e-41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + D+HL L +++
Sbjct: 632 TGRCGNTGRAISFFDLESDNHLAQPLVKVL 661
Score = 49 (22.3 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 473 KEQRQTLMFSATFP 486
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 388 (141.6 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 93/219 (42%), Positives = 133/219 (60%)
Query: 1371 EKSLDEMTERDWRI----FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 1426
E+ + E T+ D + +R+ +++ I+G P+P + + + P I + G+ P
Sbjct: 76 EEEVKEETKEDIVLSPTEWRKKHNVLIEGKSQPNPFQKFTDYEFPRMFQHIFQ--GFTAP 133
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
T IQ Q+ PI L D++G+A TGSGKTLAFLLP L+ I SLPK P ++M
Sbjct: 134 TVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPK---RPSYGATPLVLVM 190
Query: 1487 APTRELAQQIEE--ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
APTRELAQQIEE +T+ GT IR + GGL + +Q LR G +IVI TPGRL D+
Sbjct: 191 APTRELAQQIEEVCKTSIRGT--SIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDL 248
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L +L + Y+VLDEADRM+DMGF P ++ +++ +P
Sbjct: 249 LRKHHL--SSVQYLVLDEADRMLDMGFMPQIESLIDQIP 285
Score = 388 (141.6 bits), Expect = 9.4e-61, Sum P(3) = 9.4e-61
Identities = 93/219 (42%), Positives = 133/219 (60%)
Query: 696 EKSLDEMTERDWRI----FREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEP 751
E+ + E T+ D + +R+ +++ I+G P+P + + + P I + G+ P
Sbjct: 76 EEEVKEETKEDIVLSPTEWRKKHNVLIEGKSQPNPFQKFTDYEFPRMFQHIFQ--GFTAP 133
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
T IQ Q+ PI L D++G+A TGSGKTLAFLLP L+ I SLPK P ++M
Sbjct: 134 TVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPK---RPSYGATPLVLVM 190
Query: 812 APTRELAQQIEE--ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
APTRELAQQIEE +T+ GT IR + GGL + +Q LR G +IVI TPGRL D+
Sbjct: 191 APTRELAQQIEEVCKTSIRGT--SIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDL 248
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L +L + Y+VLDEADRM+DMGF P ++ +++ +P
Sbjct: 249 LRKHHL--SSVQYLVLDEADRMLDMGFMPQIESLIDQIP 285
Score = 356 (130.4 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 82/164 (50%), Positives = 107/164 (65%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ PT IQ Q+ PI L D++G+A TGSGKTLAFLLP L+ I SLPK P
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPK---RPSYGATP 185
Query: 66 YAIIMAPTRELAQQIEE--ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
++MAPTRELAQQIEE +T+ GT IR + GGL + +Q LR G +IVI TPG
Sbjct: 186 LVLVMAPTRELAQQIEEVCKTSIRGT--SIRQLCAYGGLGKIDQSRILRNGVDIVIGTPG 243
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
RL D+L +L + Y+VLDEADRM+DMGF P ++ +++ +P
Sbjct: 244 RLNDLLRKHHL--SSVQYLVLDEADRMLDMGFMPQIESLIDQIP 285
Score = 316 (116.3 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 91/252 (36%), Positives = 127/252 (50%)
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 1611
L+ Y+VLDEADRM+DMGF P ++ +++ +P K R
Sbjct: 254 LSSVQYLVLDEADRMLDMGFMPQIESLIDQIP-------------------------KER 288
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGS---VGK--PTERIEQIVYI--LSEQDK-R 1663
QT+MF+AT P V+ LA +L+ P + +GS G T+ I I + L D
Sbjct: 289 QTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIY 348
Query: 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGKGQEQRELALNSLK 1722
++ ++L VI+F N+K D L + + LH GK Q RE L +
Sbjct: 349 DEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFR 408
Query: 1723 GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
IL+ATDVA RG+DI V V NY + +IEDY HRIGRTGRAGK G A S+ T
Sbjct: 409 DHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQ 468
Query: 1783 DSHLFYDLKQMM 1794
+L DL +++
Sbjct: 469 TPNL-RDLVKIL 479
Score = 316 (116.3 bits), Expect = 9.4e-61, Sum P(3) = 9.4e-61
Identities = 91/252 (36%), Positives = 127/252 (50%)
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 936
L+ Y+VLDEADRM+DMGF P ++ +++ +P K R
Sbjct: 254 LSSVQYLVLDEADRMLDMGFMPQIESLIDQIP-------------------------KER 288
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGS---VGK--PTERIEQIVYI--LSEQDK-R 988
QT+MF+AT P V+ LA +L+ P + +GS G T+ I I + L D
Sbjct: 289 QTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIY 348
Query: 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGKGQEQRELALNSLK 1047
++ ++L VI+F N+K D L + + LH GK Q RE L +
Sbjct: 349 DEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFR 408
Query: 1048 GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
IL+ATDVA RG+DI V V NY + +IEDY HRIGRTGRAGK G A S+ T
Sbjct: 409 DHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQ 468
Query: 1108 DSHLFYDLKQMM 1119
+L DL +++
Sbjct: 469 TPNL-RDLVKIL 479
Score = 116 (45.9 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 41/132 (31%), Positives = 60/132 (45%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGS---VGK--PTERIEQIVYI--LSEQD 292
K RQT+MF+AT P V+ LA +L+ P + +GS G T+ I I + L D
Sbjct: 286 KERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDD 345
Query: 293 K-RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE-KLGYNACTLHGGKGQEQRELALN 350
++ ++L VI+F N+K D L + + LH GK Q RE L
Sbjct: 346 LIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLK 405
Query: 351 SLKGGSKDILMA 362
+ IL+A
Sbjct: 406 LFRDHRIRILIA 417
Score = 47 (21.6 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAGK G A S+ T +L DL +++
Sbjct: 452 TGRAGKTGDAWSYVTTQTPNL-RDLVKIL 479
Score = 47 (21.6 bits), Expect = 2.3e-29, Sum P(3) = 2.3e-29
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 193 KYRQTVMFTATMPP-AKIL 210
K RQT+MF+AT P K+L
Sbjct: 286 KERQTLMFSATWPKEVKLL 304
Score = 40 (19.1 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 166 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 197
MP T+ K TED E K+ +S KK + +
Sbjct: 1 MPSTSSKRKTEDESLEVKV--EQSSSKKLKMS 30
Score = 40 (19.1 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 213 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
MP T+ K TED E K+ +S KK + +
Sbjct: 1 MPSTSSKRKTEDESLEVKV--EQSSSKKLKMS 30
Score = 40 (19.1 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 938
MP T+ K TED E K+ +S KK + +
Sbjct: 1 MPSTSSKRKTEDESLEVKV--EQSSSKKLKMS 30
Score = 39 (18.8 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1243 EQDPEEKELNKDKEREGEAIKE 1264
E+ EK+ + KE + E +KE
Sbjct: 60 EEKKSEKKSSSSKEDKEEEVKE 81
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 338 (124.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 75/188 (39%), Positives = 115/188 (61%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 994 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
L+ATDVA RGIDIK +S VINY++ + EDY HRIGRT RAG GLAVS + + L
Sbjct: 298 RALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWL 357
Query: 1112 FYDLKQMM 1119
+++++
Sbjct: 358 LTAIEELL 365
Score = 338 (124.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 75/188 (39%), Positives = 115/188 (61%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 1669 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
L+ATDVA RGIDIK +S VINY++ + EDY HRIGRT RAG GLAVS + + L
Sbjct: 298 RALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWL 357
Query: 1787 FYDLKQMM 1794
+++++
Sbjct: 358 LTAIEELL 365
Score = 330 (121.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 70/177 (39%), Positives = 112/177 (63%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL + +L+ I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQL 67
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + + A+++ PTRELAQQ+ + +G + + GG+S ++Q L+
Sbjct: 68 ISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+G +I+IATPGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Score = 330 (121.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 70/177 (39%), Positives = 112/177 (63%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL + +L+ I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQL 67
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + + A+++ PTRELAQQ+ + +G + + GG+S ++Q L+
Sbjct: 68 ISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+G +I+IATPGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Score = 318 (117.0 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 84/251 (33%), Positives = 138/251 (54%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L + +
Sbjct: 20 ITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQLISVQPCKPE 76
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELAQQ+ + +G + + GG+S ++Q L++G +I+IAT
Sbjct: 77 LR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN--LKPDTEDAE 179
PGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T L A+
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
D K+ N + K V A +E + V + DA+ + +L + +
Sbjct: 194 DIYKMSKNILVEPKM---VEIDEKNKAADDVEQL-VYGV-----DADRKRELTSFLIGSR 244
Query: 240 KYRQTVMFTAT 250
++Q ++FT T
Sbjct: 245 NWKQVLVFTRT 255
Score = 168 (64.2 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 300 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 358 DILMA 362
L+A
Sbjct: 298 RALIA 302
Score = 49 (22.3 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
T RAG GLAVS + + L +++++
Sbjct: 337 TARAGNSGLAVSLVSPGEEWLLTAIEELL 365
Score = 37 (18.1 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTAT 944
DA+ + +L + + ++Q ++FT T
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRT 255
Score = 37 (18.1 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTAT 1619
DA+ + +L + + ++Q ++FT T
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRT 255
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 338 (124.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 75/188 (39%), Positives = 115/188 (61%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 994 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
L+ATDVA RGIDIK +S VINY++ + EDY HRIGRT RAG GLAVS + + L
Sbjct: 298 RALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWL 357
Query: 1112 FYDLKQMM 1119
+++++
Sbjct: 358 LTAIEELL 365
Score = 338 (124.0 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 75/188 (39%), Positives = 115/188 (61%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 1669 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
L+ATDVA RGIDIK +S VINY++ + EDY HRIGRT RAG GLAVS + + L
Sbjct: 298 RALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWL 357
Query: 1787 FYDLKQMM 1794
+++++
Sbjct: 358 LTAIEELL 365
Score = 330 (121.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 70/177 (39%), Positives = 112/177 (63%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL + +L+ I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQL 67
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + + A+++ PTRELAQQ+ + +G + + GG+S ++Q L+
Sbjct: 68 ISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+G +I+IATPGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Score = 330 (121.2 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
Identities = 70/177 (39%), Positives = 112/177 (63%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL + +L+ I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L
Sbjct: 11 SLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQL 67
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + + A+++ PTRELAQQ+ + +G + + GG+S ++Q L+
Sbjct: 68 ISVQPCKPELR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELK 124
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+G +I+IATPGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T
Sbjct: 125 VGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT 181
Score = 318 (117.0 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
Identities = 84/251 (33%), Positives = 138/251 (54%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + Y EPT IQ+Q+IP+ L D++ A+TG+GKT AF LP+L Q L + +
Sbjct: 20 ITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL---QQLISVQPCKPE 76
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELAQQ+ + +G + + GG+S ++Q L++G +I+IAT
Sbjct: 77 LR---ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN--LKPDTEDAE 179
PGRL+D+L + L+ +V DEADRM+DMGF+ ++ +I +Y+P T L A+
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 239
D K+ N + K V A +E + V + DA+ + +L + +
Sbjct: 194 DIYKMSKNILVEPKM---VEIDEKNKAADDVEQL-VYGV-----DADRKRELTSFLIGSR 244
Query: 240 KYRQTVMFTAT 250
++Q ++FT T
Sbjct: 245 NWKQVLVFTRT 255
Score = 168 (64.2 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K +QT++F+AT + +++++ L P V I K + +EQ+VY + + D++++L
Sbjct: 180 KTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGV-DADRKRELTS 238
Query: 300 VL--NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L +R K+ V++F K+ AD LAK + K G + +HG K Q RE AL+ K G
Sbjct: 239 FLIGSRNWKQ-VLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 358 DILMA 362
L+A
Sbjct: 298 RALIA 302
Score = 49 (22.3 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
T RAG GLAVS + + L +++++
Sbjct: 337 TARAGNSGLAVSLVSPGEEWLLTAIEELL 365
Score = 37 (18.1 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTAT 944
DA+ + +L + + ++Q ++FT T
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRT 255
Score = 37 (18.1 bits), Expect = 4.3e-29, Sum P(2) = 4.3e-29
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTAT 1619
DA+ + +L + + ++Q ++FT T
Sbjct: 229 DADRKRELTSFLIGSRNWKQVLVFTRT 255
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 339 (124.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 74/175 (42%), Positives = 109/175 (62%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ + L + +L + ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
P + E + A+++ PTRELAQQ+ + + ++ V V GG S + Q
Sbjct: 68 FIEQPW--QREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
LR G +I+IATPGRL+D + L L + +VLDEADRM+DMGF PD+Q++L
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 339 (124.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 74/175 (42%), Positives = 109/175 (62%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ + L + +L + ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
P + E + A+++ PTRELAQQ+ + + ++ V V GG S + Q
Sbjct: 68 FIEQPW--QREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
LR G +I+IATPGRL+D + L L + +VLDEADRM+DMGF PD+Q++L
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 337 (123.7 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 89/250 (35%), Positives = 141/250 (56%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+ P + E
Sbjct: 21 LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPW--QREAN 78
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELAQQ+ + + ++ V V GG S + Q LR G +I+IAT
Sbjct: 79 SKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIAT 138
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAED 180
PGRL+D + L L + +VLDEADRM+DMGF PD+Q++L + P+ + +
Sbjct: 139 PGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDS 198
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+ K +A Y + + V T + A+ ++ M + P D + + +LL+ K
Sbjct: 199 KIKAVA-YRIMRDPIE-VQVTPSNSTAETVQQM----VYP--VDKKRKRELLSYLIGSKN 250
Query: 241 YRQTVMFTAT 250
++Q ++FT T
Sbjct: 251 WQQVLVFTKT 260
Score = 328 (120.5 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 68/173 (39%), Positives = 103/173 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
ATDVA RG+DI + V+NYDM EDY HRIGRTGRAG GLAVS + D+
Sbjct: 307 ATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 328 (120.5 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 68/173 (39%), Positives = 103/173 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
ATDVA RG+DI + V+NYDM EDY HRIGRTGRAG GLAVS + D+
Sbjct: 307 ATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 160 (61.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 362 A 362
A
Sbjct: 307 A 307
Score = 52 (23.4 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG GLAVS + D+
Sbjct: 342 TGRAGLAGLAVSLLSHDE 359
Score = 39 (18.8 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTAT 944
D + + +LL+ K ++Q ++FT T
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKT 260
Score = 39 (18.8 bits), Expect = 7.9e-32, Sum P(3) = 7.9e-32
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 1296 VDYNSIYKER---HQVQFFGRGNIAGIDIKAQKRDQ 1328
V+Y+ +K H++ GR +AG+ + D+
Sbjct: 324 VNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 39 (18.8 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTAT 1619
D + + +LL+ K ++Q ++FT T
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKT 260
Score = 39 (18.8 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 621 VDYNSIYKER---HQVQFFGRGNIAGIDIKAQKRDQ 653
V+Y+ +K H++ GR +AG+ + D+
Sbjct: 324 VNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 339 (124.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 74/175 (42%), Positives = 109/175 (62%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ + L + +L + ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
P + E + A+++ PTRELAQQ+ + + ++ V V GG S + Q
Sbjct: 68 FIEQPW--QREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
LR G +I+IATPGRL+D + L L + +VLDEADRM+DMGF PD+Q++L
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 339 (124.4 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 74/175 (42%), Positives = 109/175 (62%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ + L + +L + ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
P + E + A+++ PTRELAQQ+ + + ++ V V GG S + Q
Sbjct: 68 FIEQPW--QREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
LR G +I+IATPGRL+D + L L + +VLDEADRM+DMGF PD+Q++L
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL 180
Score = 337 (123.7 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 89/250 (35%), Positives = 141/250 (56%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++G A PTPIQ+QAIP LQ +D++ A+TG+GKT AF LPL+ P + E
Sbjct: 21 LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPW--QREAN 78
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+++ PTRELAQQ+ + + ++ V V GG S + Q LR G +I+IAT
Sbjct: 79 SKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIAT 138
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM-PVTNLKPDTEDAED 180
PGRL+D + L L + +VLDEADRM+DMGF PD+Q++L + P+ + +
Sbjct: 139 PGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDS 198
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+ K +A Y + + V T + A+ ++ M + P D + + +LL+ K
Sbjct: 199 KIKAVA-YRIMRDPIE-VQVTPSNSTAETVQQM----VYP--VDKKRKRELLSYLIGSKN 250
Query: 241 YRQTVMFTAT 250
++Q ++FT T
Sbjct: 251 WQQVLVFTKT 260
Score = 328 (120.5 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 68/173 (39%), Positives = 103/173 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
ATDVA RG+DI + V+NYDM EDY HRIGRTGRAG GLAVS + D+
Sbjct: 307 ATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 328 (120.5 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 68/173 (39%), Positives = 103/173 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
ATDVA RG+DI + V+NYDM EDY HRIGRTGRAG GLAVS + D+
Sbjct: 307 ATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 160 (61.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+ F+AT ++ +A +R P V + E ++Q+VY + ++ KR+ L ++
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F ++G+D LA+ L+ G A +++G K Q R+ AL+ K G L+
Sbjct: 247 GSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALI 306
Query: 362 A 362
A
Sbjct: 307 A 307
Score = 52 (23.4 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG GLAVS + D+
Sbjct: 342 TGRAGLAGLAVSLLSHDE 359
Score = 39 (18.8 bits), Expect = 3.5e-33, Sum P(3) = 3.5e-33
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 918 DAEDENKLLANYNSKKKYRQTVMFTAT 944
D + + +LL+ K ++Q ++FT T
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKT 260
Score = 39 (18.8 bits), Expect = 7.9e-32, Sum P(3) = 7.9e-32
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 1296 VDYNSIYKER---HQVQFFGRGNIAGIDIKAQKRDQ 1328
V+Y+ +K H++ GR +AG+ + D+
Sbjct: 324 VNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Score = 39 (18.8 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 1593 DAEDENKLLANYNSKKKYRQTVMFTAT 1619
D + + +LL+ K ++Q ++FT T
Sbjct: 234 DKKRKRELLSYLIGSKNWQQVLVFTKT 260
Score = 39 (18.8 bits), Expect = 4.8e-30, Sum P(2) = 4.8e-30
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 621 VDYNSIYKER---HQVQFFGRGNIAGIDIKAQKRDQ 653
V+Y+ +K H++ GR +AG+ + D+
Sbjct: 324 VNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 362 (132.5 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 80/192 (41%), Positives = 115/192 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 396
Query: 836 TVLVVGGLSREEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892
V++ GG + G+ +R GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+
Sbjct: 397 AVVIYGGT---QLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRML 453
Query: 893 DMGFEPDVQKIL 904
DMGF P+++K++
Sbjct: 454 DMGFGPEMKKLI 465
Score = 362 (132.5 bits), Expect = 2.4e-60, Sum P(2) = 2.4e-60
Identities = 80/192 (41%), Positives = 115/192 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 396
Query: 1511 TVLVVGGLSREEQGFRLRL---GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567
V++ GG + G+ +R GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+
Sbjct: 397 AVVIYGGT---QLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRML 453
Query: 1568 DMGFEPDVQKIL 1579
DMGF P+++K++
Sbjct: 454 DMGFGPEMKKLI 465
Score = 349 (127.9 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 78/206 (37%), Positives = 122/206 (59%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 532
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 593 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 652
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 653 LAQPLVKVLSDAQQDVPAWLEEIAFS 678
Score = 347 (127.2 bits), Expect = 2.4e-60, Sum P(2) = 2.4e-60
Identities = 74/189 (39%), Positives = 116/189 (61%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 532
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 593 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNH 652
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 653 LAQPLVKVL 661
Score = 341 (125.1 bits), Expect = 2.6e-58, Sum P(3) = 2.6e-58
Identities = 75/165 (45%), Positives = 103/165 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L + A
Sbjct: 304 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 363
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL---GCEIV 118
Q P II+APTREL QI E KF +R V++ GG + G+ +R GC I+
Sbjct: 364 LQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGT---QLGYSIRQIVQGCNIL 420
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
ATPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 421 CATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI 465
Score = 184 (69.8 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 473 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 532
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 533 VEILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 592
Query: 358 DILMA 362
+L+A
Sbjct: 593 PVLVA 597
Score = 52 (23.4 bits), Expect = 2.5e-41, Sum P(3) = 2.5e-41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMM 1153
TGR G G A+SF + D+HL L +++
Sbjct: 632 TGRCGNTGRAISFFDPESDNHLAQPLVKVL 661
Score = 49 (22.3 bits), Expect = 2.6e-58, Sum P(3) = 2.6e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 473 KEQRQTLMFSATFP 486
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 376 (137.4 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 81/196 (41%), Positives = 119/196 (60%)
Query: 1387 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
+D + + G P + ++EA L + + + K GY +PTP+Q+ IPI RD++
Sbjct: 261 DDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMAC 320
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TGSGKT AFLLP+L + A Q P AII+APTREL QI E KF
Sbjct: 321 AQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYG 380
Query: 1507 LGIRTVLVVGGLSREEQGFRLR---LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
+R V+V GG++ G+ +R GC ++ ATPGRL D++ + L++ Y+VLDEA
Sbjct: 381 TCVRPVVVYGGINT---GYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEA 437
Query: 1564 DRMIDMGFEPDVQKIL 1579
DRM+DMGFEP+++K++
Sbjct: 438 DRMLDMGFEPEMRKLV 453
Score = 376 (137.4 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 81/196 (41%), Positives = 119/196 (60%)
Query: 712 EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
+D + + G P + ++EA L + + + K GY +PTP+Q+ IPI RD++
Sbjct: 261 DDILVDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMAC 320
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TGSGKT AFLLP+L + A Q P AII+APTREL QI E KF
Sbjct: 321 AQTGSGKTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYG 380
Query: 832 LGIRTVLVVGGLSREEQGFRLR---LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
+R V+V GG++ G+ +R GC ++ ATPGRL D++ + L++ Y+VLDEA
Sbjct: 381 TCVRPVVVYGGINT---GYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEA 437
Query: 889 DRMIDMGFEPDVQKIL 904
DRM+DMGFEP+++K++
Sbjct: 438 DRMLDMGFEPEMRKLV 453
Score = 346 (126.9 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 75/165 (45%), Positives = 105/165 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ K GY +PTP+Q+ IPI RD++ A+TGSGKT AFLLP+L + A
Sbjct: 292 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 351
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR---LGCEIV 118
Q P AII+APTREL QI E KF +R V+V GG++ G+ +R GC ++
Sbjct: 352 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINT---GYTIREVLKGCNVL 408
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
ATPGRL D++ + L++ Y+VLDEADRM+DMGFEP+++K++
Sbjct: 409 CATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLV 453
Score = 333 (122.3 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 76/199 (38%), Positives = 119/199 (59%)
Query: 1599 KLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYI 1656
KL+A+ K+ RQT+MF+AT P ++R+A +L+ + +G VG +EQ V
Sbjct: 451 KLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQ 510
Query: 1657 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1716
+ + KR +L+E+L + ++FV K+ AD +A L + + ++HG + Q +RE
Sbjct: 511 VDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREK 570
Query: 1717 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1776
AL+ + G +LVAT VA RG+DI+ V V+N+DM SI++Y HRIGRTGR G G AV
Sbjct: 571 ALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAV 630
Query: 1777 SFCTKD-DSHLFYDLKQMM 1794
SF + D+ L L +++
Sbjct: 631 SFFNPESDTPLARSLVKVL 649
Score = 333 (122.3 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 76/199 (38%), Positives = 119/199 (59%)
Query: 924 KLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYI 981
KL+A+ K+ RQT+MF+AT P ++R+A +L+ + +G VG +EQ V
Sbjct: 451 KLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQ 510
Query: 982 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 1041
+ + KR +L+E+L + ++FV K+ AD +A L + + ++HG + Q +RE
Sbjct: 511 VDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREK 570
Query: 1042 ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAV 1101
AL+ + G +LVAT VA RG+DI+ V V+N+DM SI++Y HRIGRTGR G G AV
Sbjct: 571 ALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAV 630
Query: 1102 SFCTKD-DSHLFYDLKQMM 1119
SF + D+ L L +++
Sbjct: 631 SFFNPESDTPLARSLVKVL 649
Score = 174 (66.3 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 43/135 (31%), Positives = 76/135 (56%)
Query: 230 KLLANYNS-KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYI 287
KL+A+ K+ RQT+MF+AT P ++R+A +L+ + +G VG +EQ V
Sbjct: 451 KLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQ 510
Query: 288 LSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQREL 347
+ + KR +L+E+L + ++FV K+ AD +A L + + ++HG + Q +RE
Sbjct: 511 VDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREK 570
Query: 348 ALNSLKGGSKDILMA 362
AL+ + G +L+A
Sbjct: 571 ALSDFRLGHCPVLVA 585
Score = 51 (23.0 bits), Expect = 4.4e-27, Sum P(4) = 4.4e-27
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 183 KLLANYNS-KKKYRQTVMFTATMPPAKILEYMPVTNLKPD 221
KL+A+ K+ RQT+MF+AT P + ++ M LK D
Sbjct: 451 KLVASPGMPSKEERQTLMFSATYP--EDIQRMAADFLKVD 488
Score = 44 (20.5 bits), Expect = 1.0e-39, Sum P(4) = 1.0e-39
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMM 1153
TGR G G AVSF + D+ L L +++
Sbjct: 620 TGRCGNTGRAVSFFNPESDTPLARSLVKVL 649
Score = 40 (19.1 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1687 GAD-VLAKGLEKLGYNACTLHGGKGQEQRE---LALNSLKGGS 1725
GA V+ K LE++ ++A HG G R + +S KGGS
Sbjct: 651 GAQQVVPKWLEEVAFSA---HGTTGFNPRGKVFASTDSRKGGS 690
Score = 40 (19.1 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 1012 GAD-VLAKGLEKLGYNACTLHGGKGQEQRE---LALNSLKGGS 1050
GA V+ K LE++ ++A HG G R + +S KGGS
Sbjct: 651 GAQQVVPKWLEEVAFSA---HGTTGFNPRGKVFASTDSRKGGS 690
Score = 40 (19.1 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 318 GAD-VLAKGLEKLGYNACTLHGGKGQEQRE---LALNSLKGGS 356
GA V+ K LE++ ++A HG G R + +S KGGS
Sbjct: 651 GAQQVVPKWLEEVAFSA---HGTTGFNPRGKVFASTDSRKGGS 690
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 363 (132.8 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 393
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 394 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 453
Query: 896 FEPDVQKIL 904
F P+++K++
Sbjct: 454 FGPEMKKLI 462
Score = 363 (132.8 bits), Expect = 3.6e-60, Sum P(2) = 3.6e-60
Identities = 78/189 (41%), Positives = 112/189 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT AFLLP+L + A Q P II+APTREL QI E KF +R
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 393
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DMG
Sbjct: 394 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 453
Query: 1571 FEPDVQKIL 1579
F P+++K++
Sbjct: 454 FGPEMKKLI 462
Score = 347 (127.2 bits), Expect = 1.7e-60, Sum P(2) = 1.7e-60
Identities = 78/206 (37%), Positives = 121/206 (58%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + KR+KL
Sbjct: 470 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKL 529
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 530 LEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 589
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 590 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 649
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 650 LAQPLVKVLTDAQQDVPAWLEEIAFS 675
Score = 344 (126.2 bits), Expect = 3.6e-60, Sum P(2) = 3.6e-60
Identities = 74/189 (39%), Positives = 115/189 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + KR+KL
Sbjct: 470 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKL 529
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 530 LEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 589
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D+H
Sbjct: 590 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNH 649
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 650 LAQPLVKVL 658
Score = 342 (125.4 bits), Expect = 3.2e-58, Sum P(3) = 3.2e-58
Identities = 73/162 (45%), Positives = 100/162 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L + A
Sbjct: 301 IAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKE 360
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ AT
Sbjct: 361 LQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT 420
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
PGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 421 PGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 462
Score = 181 (68.8 bits), Expect = 3.7e-41, Sum P(3) = 3.7e-41
Identities = 42/125 (33%), Positives = 70/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + KR+KL
Sbjct: 470 KEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKL 529
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 530 LEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKC 589
Query: 358 DILMA 362
+L+A
Sbjct: 590 PVLVA 594
Score = 52 (23.4 bits), Expect = 3.7e-41, Sum P(3) = 3.7e-41
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + D+HL L +++
Sbjct: 629 TGRCGNTGRAISFFDLESDNHLAQPLVKVL 658
Score = 49 (22.3 bits), Expect = 3.2e-58, Sum P(3) = 3.2e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 470 KEQRQTLMFSATFP 483
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 347 (127.2 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 75/174 (43%), Positives = 110/174 (63%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L IL+ IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
K+ A+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+
Sbjct: 68 KVR----ANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I++ATPGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 347 (127.2 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 75/174 (43%), Positives = 110/174 (63%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L IL+ IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
K+ A+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+
Sbjct: 68 KVR----ANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I++ATPGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 337 (123.7 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 72/166 (43%), Positives = 106/166 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + PK+ A
Sbjct: 16 IEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR----A 71
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+ G +I++AT
Sbjct: 72 NQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 318 (117.0 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 64/183 (34%), Positives = 102/183 (55%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G ILV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATD+A RGIDI + V+N+++ K EDY HRIGRTGRAG+ G A+S + ++ + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 1116 KQM 1118
+++
Sbjct: 359 ERL 361
Score = 318 (117.0 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 64/183 (34%), Positives = 102/183 (55%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G ILV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATD+A RGIDI + V+N+++ K EDY HRIGRTGRAG+ G A+S + ++ + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 1791 KQM 1793
+++
Sbjct: 359 ERL 361
Score = 165 (63.1 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G IL+
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 362 A 362
A
Sbjct: 299 A 299
Score = 41 (19.5 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQM 1152
TGRAG+ G A+S + ++ + ++++
Sbjct: 334 TGRAGEVGKAISLVSAIEAPELFAIERL 361
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 347 (127.2 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 75/174 (43%), Positives = 110/174 (63%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L IL+ IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
K+ A+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+
Sbjct: 68 KVR----ANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I++ATPGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 347 (127.2 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 75/174 (43%), Positives = 110/174 (63%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L IL+ IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + P
Sbjct: 8 LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGP 67
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
K+ A+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+
Sbjct: 68 KVR----ANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I++ATPGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 337 (123.7 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 72/166 (43%), Positives = 106/166 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE+ GY P+PIQ QAIP L +D++ A+TG+GKT F LP+L + PK+ A
Sbjct: 16 IEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVR----A 71
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+Q A+I+ PTRELA QI++ +G L +++ +V GG+ Q R+ G +I++AT
Sbjct: 72 NQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D+ + +Q +VLDEADRM+DMGF D+ KIL+ +P
Sbjct: 131 PGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
Score = 318 (117.0 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 64/183 (34%), Positives = 102/183 (55%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G ILV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATD+A RGIDI + V+N+++ K EDY HRIGRTGRAG+ G A+S + ++ + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 1116 KQM 1118
+++
Sbjct: 359 ERL 361
Score = 318 (117.0 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 64/183 (34%), Positives = 102/183 (55%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G ILV
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATD+A RGIDI + V+N+++ K EDY HRIGRTGRAG+ G A+S + ++ + +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 1791 KQM 1793
+++
Sbjct: 359 ERL 361
Score = 165 (63.1 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ ++F+AT + LA+ + P + + +EQ +Y + K L++++
Sbjct: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
G + V++F+ K GA+ LA L + G A +HG K Q R AL K G IL+
Sbjct: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 362 A 362
A
Sbjct: 299 A 299
Score = 41 (19.5 bits), Expect = 6.3e-45, Sum P(3) = 6.3e-45
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQM 1152
TGRAG+ G A+S + ++ + ++++
Sbjct: 334 TGRAGEVGKAISLVSAIEAPELFAIERL 361
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 345 (126.5 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 72/184 (39%), Positives = 108/184 (58%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
D + + L +L+ + GY P+PIQ QAIP + RD++ A+TG+GKT F L
Sbjct: 3 DTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTL 62
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
PLL Q L + + A+I+ PTRELA QI E +G L + +++V GG+
Sbjct: 63 PLL---QRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVK 119
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
Q RLR G ++++ATPGRL+D+ R + +Q +LDEADRM+DMGF D++K++
Sbjct: 120 INPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
Query: 905 EYMP 908
+P
Sbjct: 180 TALP 183
Score = 345 (126.5 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 72/184 (39%), Positives = 108/184 (58%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
D + + L +L+ + GY P+PIQ QAIP + RD++ A+TG+GKT F L
Sbjct: 3 DTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTL 62
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
PLL Q L + + A+I+ PTRELA QI E +G L + +++V GG+
Sbjct: 63 PLL---QRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVK 119
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
Q RLR G ++++ATPGRL+D+ R + +Q +LDEADRM+DMGF D++K++
Sbjct: 120 INPQIARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
Query: 1580 EYMP 1583
+P
Sbjct: 180 TALP 183
Score = 336 (123.3 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 69/162 (42%), Positives = 100/162 (61%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY P+PIQ QAIP + RD++ A+TG+GKT F LPLL Q L + +
Sbjct: 25 GYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLL---QRLSSSKGNKVSSNNV 81
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+ PTRELA QI E +G L + +++V GG+ Q RLR G ++++ATPGRL
Sbjct: 82 RALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATPGRL 141
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
+D+ R + +Q +LDEADRM+DMGF D++K++ +P
Sbjct: 142 LDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALP 183
Score = 320 (117.7 bits), Expect = 2.0e-60, Sum P(2) = 2.0e-60
Identities = 77/243 (31%), Positives = 121/243 (49%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K RQ ++F+AT P + LA+ + P + + + E++ Q + + ++ K L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTH 243
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ + V++F K GA+ L K LE G A +HG K Q R AL + K GS I
Sbjct: 244 LIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKI 303
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
LVATD+A RGIDI + V+N+D+ EDY HRIGRT RAG G A+S D+ L +
Sbjct: 304 LVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLW 363
Query: 1114 DLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQH 1173
++ + I + + ++ + + +S + LKQ P + P +H
Sbjct: 364 GIEHV-IQQHIERKVIEKFIPAN--ELGESRVIKPLKQ---GKPPKSAKPHGAGKGRVEH 417
Query: 1174 KPG 1176
K G
Sbjct: 418 KDG 420
Score = 317 (116.6 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 67/186 (36%), Positives = 102/186 (54%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K RQ ++F+AT P + LA+ + P + + + E++ Q + + ++ K L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTH 243
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ + V++F K GA+ L K LE G A +HG K Q R AL + K GS I
Sbjct: 244 LIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKI 303
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVATD+A RGIDI + V+N+D+ EDY HRIGRT RAG G A+S D+ L +
Sbjct: 304 LVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLW 363
Query: 1789 DLKQMM 1794
++ ++
Sbjct: 364 GIEHVI 369
Score = 168 (64.2 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K RQ ++F+AT P + LA+ + P + + + E++ Q + + ++ K L
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTH 243
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ + V++F K GA+ L K LE G A +HG K Q R AL + K GS I
Sbjct: 244 LIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKI 303
Query: 360 LMA 362
L+A
Sbjct: 304 LVA 306
Score = 41 (19.5 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 193 KYRQTVMFTATMPPA-KILEYMPVTN---LKPDTED--AEDENKLLANYNSKKK 240
K RQ ++F+AT P + L V N + D E+ AE + L + K+K
Sbjct: 184 KDRQNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRK 237
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 363 (132.8 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 379
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 380 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 439
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 440 GFGPEMKKLI 449
Score = 363 (132.8 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 379
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 380 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 439
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 440 GFGPEMKKLI 449
Score = 345 (126.5 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 79/207 (38%), Positives = 126/207 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 992 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDS 1109
+LVAT VA RG+DI++V VIN+++ +I++Y HRIGRTGR G G A+SF T+ D+
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDN 635
Query: 1110 HLFYDLKQMMISSPVTGRAGKEGLAVS 1136
HL L +++ + A E +A S
Sbjct: 636 HLAQPLVKVLSDAQQDVPAWLEEIAFS 662
Score = 343 (125.8 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 75/190 (39%), Positives = 120/190 (63%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 1667 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDS 1784
+LVAT VA RG+DI++V VIN+++ +I++Y HRIGRTGR G G A+SF T+ D+
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDN 635
Query: 1785 HLFYDLKQMM 1794
HL L +++
Sbjct: 636 HLAQPLVKVL 645
Score = 342 (125.4 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 73/163 (44%), Positives = 104/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 288 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 347
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 348 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCA 406
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 407 TPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI 449
Score = 179 (68.1 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 43/126 (34%), Positives = 74/126 (58%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 298 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 357 KDILMA 362
+L+A
Sbjct: 576 CPVLVA 581
Score = 58 (25.5 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1125 TGRAGKEGLAVSFC-TKDDSHLFYDLKQMM 1153
TGR G G A+SF T+ D+HL L +++
Sbjct: 616 TGRCGNTGRAISFFDTESDNHLAQPLVKVL 645
Score = 46 (21.3 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT++F+AT P
Sbjct: 457 KEQRQTLLFSATFP 470
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 363 (132.8 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 379
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 380 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 439
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 440 GFGPEMKKLI 449
Score = 363 (132.8 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 78/190 (41%), Positives = 116/190 (61%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI L RD++ A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 379
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 380 RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDM 439
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 440 GFGPEMKKLI 449
Score = 345 (126.5 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
Identities = 79/207 (38%), Positives = 126/207 (60%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 992 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDS 1109
+LVAT VA RG+DI++V VIN+++ +I++Y HRIGRTGR G G A+SF T+ D+
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDN 635
Query: 1110 HLFYDLKQMMISSPVTGRAGKEGLAVS 1136
HL L +++ + A E +A S
Sbjct: 636 HLAQPLVKVLSDAQQDVPAWLEEIAFS 662
Score = 343 (125.8 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 75/190 (39%), Positives = 120/190 (63%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 1667 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFC-TKDDS 1784
+LVAT VA RG+DI++V VIN+++ +I++Y HRIGRTGR G G A+SF T+ D+
Sbjct: 576 CPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDN 635
Query: 1785 HLFYDLKQMM 1794
HL L +++
Sbjct: 636 HLAQPLVKVL 645
Score = 342 (125.4 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 73/163 (44%), Positives = 104/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI L RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 288 IAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 347
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 348 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCA 406
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 407 TPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLI 449
Score = 179 (68.1 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 43/126 (34%), Positives = 74/126 (58%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT++F+AT P ++RLA +L+ V +G VG ++Q + + K++KL
Sbjct: 457 KEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKL 516
Query: 298 MEVL-NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
+E+L N G ++P++ FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 517 VEILRNIGDERPMV-FVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGK 575
Query: 357 KDILMA 362
+L+A
Sbjct: 576 CPVLVA 581
Score = 58 (25.5 bits), Expect = 1.3e-41, Sum P(3) = 1.3e-41
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1125 TGRAGKEGLAVSFC-TKDDSHLFYDLKQMM 1153
TGR G G A+SF T+ D+HL L +++
Sbjct: 616 TGRCGNTGRAISFFDTESDNHLAQPLVKVL 645
Score = 46 (21.3 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT++F+AT P
Sbjct: 457 KEQRQTLLFSATFP 470
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 373 (136.4 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 77/183 (42%), Positives = 117/183 (63%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+ +KE + E+ E EK+G+ PTPIQ++AIP+ L RD+IG+A+TGSGKT AF LP++
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 788 VWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
+ + P P+ A+++APTRELA QI E+ G +G+R+V++VGG+
Sbjct: 106 QELWNNPS----------PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMV 155
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
Q L +++ TPGRL+D LEN + L Y+++DEADR++DM F P + KIL+
Sbjct: 156 TQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILK 215
Query: 906 YMP 908
+P
Sbjct: 216 IIP 218
Score = 373 (136.4 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
Identities = 77/183 (42%), Positives = 117/183 (63%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+ +KE + E+ E EK+G+ PTPIQ++AIP+ L RD+IG+A+TGSGKT AF LP++
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 1463 VWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+ + P P+ A+++APTRELA QI E+ G +G+R+V++VGG+
Sbjct: 106 QELWNNPS----------PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMV 155
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
Q L +++ TPGRL+D LEN + L Y+++DEADR++DM F P + KIL+
Sbjct: 156 TQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILK 215
Query: 1581 YMP 1583
+P
Sbjct: 216 IIP 218
Score = 355 (130.0 bits), Expect = 3.2e-58, Sum P(2) = 3.2e-58
Identities = 73/167 (43%), Positives = 109/167 (65%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
EK+G+ PTPIQ++AIP+ L RD+IG+A+TGSGKT AF LP++ + + P
Sbjct: 62 EKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPS-------- 113
Query: 63 QGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P+ A+++APTRELA QI E+ G +G+R+V++VGG+ Q L +++ T
Sbjct: 114 --PFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCT 171
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D LEN + L Y+++DEADR++DM F P + KIL+ +P
Sbjct: 172 PGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIP 218
Score = 289 (106.8 bits), Expect = 3.9e-60, Sum P(2) = 3.9e-60
Identities = 70/198 (35%), Positives = 103/198 (52%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R+T++F+ATM VE+L R+ L +P V + S + + Q + K L+ ++
Sbjct: 221 RRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
N +IIF LA L LG++A LHG Q R ALN K G++ LV
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+DI V +VINYD+ + Y HR+GRT RAG+ G +++ T+ D F +
Sbjct: 341 ATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRI 400
Query: 1116 KQMMISSPVTGRAGKEGL 1133
+ + KEG+
Sbjct: 401 EATIGKKMQEYEIDKEGV 418
Score = 287 (106.1 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
Identities = 67/177 (37%), Positives = 96/177 (54%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R+T++F+ATM VE+L R+ L +P V + S + + Q + K L+ ++
Sbjct: 221 RRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
N +IIF LA L LG++A LHG Q R ALN K G++ LV
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
ATDVA RG+DI V +VINYD+ + Y HR+GRT RAG+ G +++ T+ D F
Sbjct: 341 ATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPF 397
Score = 147 (56.8 bits), Expect = 9.4e-45, Sum P(3) = 9.4e-45
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R+T++F+ATM VE+L R+ L +P V + S + + Q + K L+ ++
Sbjct: 221 RRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
N +IIF LA L LG++A LHG Q R ALN K G++ L+
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340
Query: 362 A 362
A
Sbjct: 341 A 341
Score = 39 (18.8 bits), Expect = 9.4e-45, Sum P(3) = 9.4e-45
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLF 1146
T RAG+ G +++ T+ D F
Sbjct: 376 TARAGRAGKSIALVTQYDLEPF 397
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 375 (137.1 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 86/221 (38%), Positives = 137/221 (61%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
K D+ D+ + +D I+I+ + + P+ ++ + L +L I+ Y +PTP+Q
Sbjct: 216 KKNDDNIGIDFNAYDDD-DISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQ 274
Query: 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI--ARMEDADQG--PYAI 809
+ A+PI L+NRD++ A+TGSGKT AFL P++ + + P+ A + P A+
Sbjct: 275 KSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRAL 334
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
++APTRELAQQI +E NKF + +V++ GG Q L GC+I++AT GRL+D+
Sbjct: 335 VLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDL 394
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EY-MP 908
L + L++ Y+VLDEADRM+DMGFEP +++I+ E+ MP
Sbjct: 395 LMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMP 435
Score = 375 (137.1 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 86/221 (38%), Positives = 137/221 (61%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGK-VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 1430
K D+ D+ + +D I+I+ + + P+ ++ + L +L I+ Y +PTP+Q
Sbjct: 216 KKNDDNIGIDFNAYDDD-DISIETSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQ 274
Query: 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI--ARMEDADQG--PYAI 1484
+ A+PI L+NRD++ A+TGSGKT AFL P++ + + P+ A + P A+
Sbjct: 275 KSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRAL 334
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
++APTRELAQQI +E NKF + +V++ GG Q L GC+I++AT GRL+D+
Sbjct: 335 VLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDL 394
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EY-MP 1583
L + L++ Y+VLDEADRM+DMGFEP +++I+ E+ MP
Sbjct: 395 LMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMP 435
Score = 358 (131.1 bits), Expect = 1.6e-57, Sum P(3) = 1.6e-57
Identities = 77/174 (44%), Positives = 115/174 (66%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKI--AR 57
I+ Y +PTP+Q+ A+PI L+NRD++ A+TGSGKT AFL P++ + + P+ A
Sbjct: 262 IKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAY 321
Query: 58 MEDADQG--PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC 115
+ P A+++APTRELAQQI +E NKF + +V++ GG Q L GC
Sbjct: 322 KPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGC 381
Query: 116 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL-EY-MP 167
+I++AT GRL+D+L + L++ Y+VLDEADRM+DMGFEP +++I+ E+ MP
Sbjct: 382 DILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMP 435
Score = 328 (120.5 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 74/189 (39%), Positives = 113/189 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT+MF+AT P ++ LA +L + +G VG T+ I Q + + E+DK L++ L
Sbjct: 440 RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGT-TQNITQRIEYVVEEDKNSYLLDYL 498
Query: 996 NRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ G+K +IFV K+ D L L + + +HG Q +RE AL S + +
Sbjct: 499 S-GLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPF 557
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
LVATD+A RG+ I +V++VIN+D+ I Y HRIGRTGRAGK+GLA+SF + + +
Sbjct: 558 LVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGA 617
Query: 1114 DLKQMMISS 1122
+L ++M +S
Sbjct: 618 ELLKLMKAS 626
Score = 328 (120.5 bits), Expect = 7.2e-60, Sum P(2) = 7.2e-60
Identities = 74/189 (39%), Positives = 113/189 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT+MF+AT P ++ LA +L + +G VG T+ I Q + + E+DK L++ L
Sbjct: 440 RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGT-TQNITQRIEYVVEEDKNSYLLDYL 498
Query: 1671 NRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ G+K +IFV K+ D L L + + +HG Q +RE AL S + +
Sbjct: 499 S-GLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPF 557
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LVATD+A RG+ I +V++VIN+D+ I Y HRIGRTGRAGK+GLA+SF + + +
Sbjct: 558 LVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGA 617
Query: 1789 DLKQMMISS 1797
+L ++M +S
Sbjct: 618 ELLKLMKAS 626
Score = 160 (61.4 bits), Expect = 1.1e-42, Sum P(4) = 1.1e-42
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT+MF+AT P ++ LA +L + +G VG T+ I Q + + E+DK L++ L
Sbjct: 440 RQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGT-TQNITQRIEYVVEEDKNSYLLDYL 498
Query: 302 NRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ G+K +IFV K+ D L L + + +HG Q +RE AL S + +
Sbjct: 499 S-GLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPF 557
Query: 360 LMA 362
L+A
Sbjct: 558 LVA 560
Score = 69 (29.3 bits), Expect = 1.1e-42, Sum P(4) = 1.1e-42
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1154
G L ++F D H++ I TGRAGK+GLA+SF + + + +L ++M
Sbjct: 571 GNVNLVINFDLPTDIHIYVH----RIGR--TGRAGKKGLAISFFNEKNKPVGAELLKLMK 624
Query: 1155 SS 1156
+S
Sbjct: 625 AS 626
Score = 44 (20.5 bits), Expect = 1.6e-57, Sum P(3) = 1.6e-57
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 195 RQTVMFTATMP 205
RQT+MF+AT P
Sbjct: 440 RQTLMFSATFP 450
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 367 (134.2 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 80/196 (40%), Positives = 116/196 (59%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++E L + I K GY + TP+Q+ IPI L RD++ A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R +D Q P II+APTREL QI E KF +
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKD-QQEPECIIVAPTRELINQIFLEARKFSFGTCV 372
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 373 RPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDM 432
Query: 895 GFEPDVQKILEY--MP 908
GF P+++K++ + MP
Sbjct: 433 GFGPEMKKLISFPGMP 448
Score = 367 (134.2 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 80/196 (40%), Positives = 116/196 (59%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++E L + I K GY + TP+Q+ IPI L RD++ A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R +D Q P II+APTREL QI E KF +
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKD-QQEPECIIVAPTRELINQIFLEARKFSFGTCV 372
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+D++ + L Q Y+VLDEADRM+DM
Sbjct: 373 RPVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDM 432
Query: 1570 GFEPDVQKILEY--MP 1583
GF P+++K++ + MP
Sbjct: 433 GFGPEMKKLISFPGMP 448
Score = 351 (128.6 bits), Expect = 8.0e-58, Sum P(3) = 8.0e-58
Identities = 76/169 (44%), Positives = 106/169 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ IPI L RD++ A+TGSGKT AFLLP+L ++ +R +D
Sbjct: 281 ITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRDGVTASRFKD 340
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 341 -QQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHSIRQIMQGCNILCA 399
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY--MP 167
TPGRL+D++ + L Q Y+VLDEADRM+DMGF P+++K++ + MP
Sbjct: 400 TPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGMP 448
Score = 333 (122.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 77/200 (38%), Positives = 117/200 (58%)
Query: 1608 KKYRQTVMFTATMPPA-VERLARSYLRRPAT--VYIGSVGKPTERIEQIVYILSEQDKRK 1664
K+ RQT+MF+AT P + A +L+ V +G VG ++Q V + + KR+
Sbjct: 450 KEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKRE 509
Query: 1665 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1724
KL+E+L ++ ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 510 KLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCG 569
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-D 1783
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D
Sbjct: 570 KCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPD 629
Query: 1784 SHLFYDLKQMMISSPVSTCP 1803
SHL L +++ S CP
Sbjct: 630 SHLAQPLVKVL-SDAQQGCP 648
Score = 327 (120.2 bits), Expect = 6.7e-59, Sum P(2) = 6.7e-59
Identities = 74/191 (38%), Positives = 114/191 (59%)
Query: 933 KKYRQTVMFTATMPPA-VERLARSYLRRPAT--VYIGSVGKPTERIEQIVYILSEQDKRK 989
K+ RQT+MF+AT P + A +L+ V +G VG ++Q V + + KR+
Sbjct: 450 KEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKRE 509
Query: 990 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 1049
KL+E+L ++ ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 510 KLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCG 569
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-D 1108
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + D
Sbjct: 570 KCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPD 629
Query: 1109 SHLFYDLKQMM 1119
SHL L +++
Sbjct: 630 SHLAQPLVKVL 640
Score = 161 (61.7 bits), Expect = 4.0e-41, Sum P(3) = 4.0e-41
Identities = 41/127 (32%), Positives = 69/127 (54%)
Query: 239 KKYRQTVMFTATMPPA-VERLARSYLRRPAT--VYIGSVGKPTERIEQIVYILSEQDKRK 295
K+ RQT+MF+AT P + A +L+ V +G VG ++Q V + + KR+
Sbjct: 450 KEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKRE 509
Query: 296 KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGG 355
KL+E+L ++ ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 510 KLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCG 569
Query: 356 SKDILMA 362
+L+A
Sbjct: 570 KCPVLVA 576
Score = 61 (26.5 bits), Expect = 4.0e-41, Sum P(3) = 4.0e-41
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 1125 TGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTCP 1162
TGR G G A+SF + DSHL L +++ S CP
Sbjct: 611 TGRCGNTGKAISFFDPEPDSHLAQPLVKVL-SDAQQGCP 648
Score = 49 (22.3 bits), Expect = 8.0e-58, Sum P(3) = 8.0e-58
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 450 KEQRQTLMFSATFP 463
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 355 (130.0 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 78/190 (41%), Positives = 115/190 (60%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 396
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+DV+ + L Q Y+VLDEADRM+DM
Sbjct: 397 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDM 456
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 457 GFGPEMKKLI 466
Score = 355 (130.0 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 78/190 (41%), Positives = 115/190 (60%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 396
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+DV+ + L Q Y+VLDEADRM+DM
Sbjct: 397 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDM 456
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 457 GFGPEMKKLI 466
Score = 345 (126.5 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 78/206 (37%), Positives = 121/206 (58%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + DS
Sbjct: 594 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQ 653
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 654 LAQPLVKVLSDAQQDVPAWLEEIAFS 679
Score = 343 (125.8 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 74/189 (39%), Positives = 115/189 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + DS
Sbjct: 594 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQ 653
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 654 LAQPLVKVL 662
Score = 336 (123.3 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 73/163 (44%), Positives = 103/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 364
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 365 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCA 423
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+DV+ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 424 TPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI 466
Score = 185 (70.2 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 358 DILMA 362
+L+A
Sbjct: 594 PVLVA 598
Score = 49 (22.3 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 474 KEQRQTLMFSATFP 487
Score = 47 (21.6 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + DS L L +++
Sbjct: 633 TGRCGNTGRAISFFDLESDSQLAQPLVKVL 662
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 355 (130.0 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 78/190 (41%), Positives = 115/190 (60%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 776 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 396
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 894
R V++ GG ++ GC I+ ATPGRL+DV+ + L Q Y+VLDEADRM+DM
Sbjct: 397 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDM 456
Query: 895 GFEPDVQKIL 904
GF P+++K++
Sbjct: 457 GFGPEMKKLI 466
Score = 355 (130.0 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 78/190 (41%), Positives = 115/190 (60%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + G P + ++EA+L + I K GY + TP+Q+ +IPI RD++ A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 1451 SGKTLAFLLPLLV-WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
SGKT AFLLP+L ++ +R ++ Q P II+APTREL QI E KF +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKEL-QEPECIIVAPTRELINQIYLEARKFSFGTCV 396
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM 1569
R V++ GG ++ GC I+ ATPGRL+DV+ + L Q Y+VLDEADRM+DM
Sbjct: 397 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDM 456
Query: 1570 GFEPDVQKIL 1579
GF P+++K++
Sbjct: 457 GFGPEMKKLI 466
Score = 345 (126.5 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 78/206 (37%), Positives = 121/206 (58%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 991
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 992 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1110
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + DS
Sbjct: 594 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQ 653
Query: 1111 LFYDLKQMMISSPVTGRAGKEGLAVS 1136
L L +++ + A E +A S
Sbjct: 654 LAQPLVKVLSDAQQDVPAWLEEIAFS 679
Score = 343 (125.8 bits), Expect = 3.8e-59, Sum P(2) = 3.8e-59
Identities = 74/189 (39%), Positives = 115/189 (60%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 1666
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 1667 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSH 1785
+LVAT VA RG+DI++V VIN+D+ +I++Y HRIGRTGR G G A+SF + DS
Sbjct: 594 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDSQ 653
Query: 1786 LFYDLKQMM 1794
L L +++
Sbjct: 654 LAQPLVKVL 662
Score = 336 (123.3 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 73/163 (44%), Positives = 103/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV-WIQSLPKIARMED 60
I K GY + TP+Q+ +IPI RD++ A+TGSGKT AFLLP+L ++ +R ++
Sbjct: 305 IAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKE 364
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
Q P II+APTREL QI E KF +R V++ GG ++ GC I+ A
Sbjct: 365 L-QEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCA 423
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGRL+DV+ + L Q Y+VLDEADRM+DMGF P+++K++
Sbjct: 424 TPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLI 466
Score = 185 (70.2 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 42/125 (33%), Positives = 71/125 (56%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K+ RQT+MF+AT P ++RLA +L+ V +G VG ++Q + + + KR+KL
Sbjct: 474 KEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKL 533
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+L + ++FV KK AD +A L + + ++HG + Q +RE AL + G
Sbjct: 534 VEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 593
Query: 358 DILMA 362
+L+A
Sbjct: 594 PVLVA 598
Score = 49 (22.3 bits), Expect = 2.5e-57, Sum P(3) = 2.5e-57
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 192 KKYRQTVMFTATMP 205
K+ RQT+MF+AT P
Sbjct: 474 KEQRQTLMFSATFP 487
Score = 47 (21.6 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDLKQMM 1153
TGR G G A+SF + DS L L +++
Sbjct: 633 TGRCGNTGRAISFFDLESDSQLAQPLVKVL 662
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 358 (131.1 bits), Expect = 4.9e-59, Sum P(2) = 4.9e-59
Identities = 76/188 (40%), Positives = 107/188 (56%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMPP V +L P T+ IG+ P + VY + K L+E+L
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQA-PASSVSHSVYPVKNHQKTPLLIEILK 235
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
K V+IF K GA+ LA + + G+ +L G Q +R + + G+ ILVA
Sbjct: 236 TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
TD+A RG+DI +S VINYDM + EDYTHRIGRTGR + G A+S T D + D+
Sbjct: 296 TDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI- 354
Query: 1792 QMMISSPV 1799
Q +I+SP+
Sbjct: 355 QKLINSPI 362
Score = 358 (131.1 bits), Expect = 9.3e-59, Sum P(3) = 9.3e-59
Identities = 76/188 (40%), Positives = 107/188 (56%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMPP V +L P T+ IG+ P + VY + K L+E+L
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQA-PASSVSHSVYPVKNHQKTPLLIEILK 235
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
K V+IF K GA+ LA + + G+ +L G Q +R + + G+ ILVA
Sbjct: 236 TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
TD+A RG+DI +S VINYDM + EDYTHRIGRTGR + G A+S T D + D+
Sbjct: 296 TDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDI- 354
Query: 1117 QMMISSPV 1124
Q +I+SP+
Sbjct: 355 QKLINSPI 362
Score = 329 (120.9 bits), Expect = 4.9e-59, Sum P(2) = 4.9e-59
Identities = 70/163 (42%), Positives = 103/163 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ GY EPTPIQ QAIP L+ D+IG+A+TG+GKT A+ LP++ + S P+ R+
Sbjct: 16 VRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPR-GRVR-- 72
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+++APTRELA QI E G IR + GG++ ++Q RLR G ++V+A
Sbjct: 73 -----TLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVAC 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
PGRL+D + + + +++DEADRM DMGF+PD+Q IL+
Sbjct: 128 PGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
Score = 329 (120.9 bits), Expect = 9.3e-59, Sum P(3) = 9.3e-59
Identities = 70/163 (42%), Positives = 103/163 (63%)
Query: 743 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 802
+ GY EPTPIQ QAIP L+ D+IG+A+TG+GKT A+ LP++ + S P+ R+
Sbjct: 16 VRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPR-GRVR-- 72
Query: 803 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 862
+++APTRELA QI E G IR + GG++ ++Q RLR G ++V+A
Sbjct: 73 -----TLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVAC 127
Query: 863 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
PGRL+D + + + +++DEADRM DMGF+PD+Q IL+
Sbjct: 128 PGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
Score = 329 (120.9 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 70/163 (42%), Positives = 103/163 (63%)
Query: 1418 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 1477
+ GY EPTPIQ QAIP L+ D+IG+A+TG+GKT A+ LP++ + S P+ R+
Sbjct: 16 VRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPR-GRVR-- 72
Query: 1478 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 1537
+++APTRELA QI E G IR + GG++ ++Q RLR G ++V+A
Sbjct: 73 -----TLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVAC 127
Query: 1538 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
PGRL+D + + + +++DEADRM DMGF+PD+Q IL+
Sbjct: 128 PGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
Score = 177 (67.4 bits), Expect = 8.8e-41, Sum P(4) = 8.8e-41
Identities = 39/120 (32%), Positives = 60/120 (50%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMPP V +L P T+ IG+ P + VY + K L+E+L
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQA-PASSVSHSVYPVKNHQKTPLLIEILK 235
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
K V+IF K GA+ LA + + G+ +L G Q +R + + G+ IL+A
Sbjct: 236 TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295
Score = 55 (24.4 bits), Expect = 8.8e-41, Sum P(4) = 8.8e-41
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPV 1158
TGR + G A+S T D + D+ Q +I+SP+
Sbjct: 330 TGRFDRTGQALSLVTGRDGDMVRDI-QKLINSPI 362
Score = 49 (22.3 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 33/133 (24%), Positives = 55/133 (41%)
Query: 196 QTVMFTATMPPA--KI-LEYM--PVT-NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 249
QT++F+ATMPP K+ LE PVT + + + + N +K +
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASSVSHSVYPVKNHQKTPLLIEILKT 236
Query: 250 TMPPAVERLARS-YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP 308
T +V AR+ Y I G T ++ + Q++R +ME RG K
Sbjct: 237 TETKSVLIFARTKYGAENLADEISRAGFTTASLQGNL----SQNRRHAVMEGFRRGNFKI 292
Query: 309 VIIFVNQKKGADV 321
++ +G D+
Sbjct: 293 LVATDIAARGLDI 305
Score = 42 (19.8 bits), Expect = 7.3e-29, Sum P(3) = 7.3e-29
Identities = 14/64 (21%), Positives = 32/64 (50%)
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNA----CTLHGGKGQEQRELALNSLKGGSKD 358
RG + +++ ++ + A+ LG A C+++GG +Q+ + L+ G D
Sbjct: 68 RGRVRTLVLAPTRELACQI-AESFRSLGQRARIRECSIYGGVNMDQQ---IRRLRSGV-D 122
Query: 359 ILMA 362
+++A
Sbjct: 123 VVVA 126
Score = 41 (19.5 bits), Expect = 9.3e-59, Sum P(3) = 9.3e-59
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQ 1612
+P EDA K +A +N++ +R+
Sbjct: 455 RPSFEDAPMAAKPVARFNARPAFRK 479
Score = 41 (19.5 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQ 937
+P EDA K +A +N++ +R+
Sbjct: 455 RPSFEDAPMAAKPVARFNARPAFRK 479
Score = 41 (19.5 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 172 KPDTEDAEDENKLLANYNSKKKYRQ 196
+P EDA K +A +N++ +R+
Sbjct: 455 RPSFEDAPMAAKPVARFNARPAFRK 479
Score = 41 (19.5 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 219 KPDTEDAEDENKLLANYNSKKKYRQ 243
+P EDA K +A +N++ +R+
Sbjct: 455 RPSFEDAPMAAKPVARFNARPAFRK 479
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 365 (133.5 bits), Expect = 5.3e-59, Sum P(2) = 5.3e-59
Identities = 80/184 (43%), Positives = 121/184 (65%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL- 787
++ E +L E+++ + + Y++PTPIQ +AIP L+ DIIG+A+TGSGKT AF +P+L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 788 -VWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 845
+W DQ PY A I+APTRELAQQI+E + G+ +G+R+ +VGG++
Sbjct: 142 RLW------------HDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNM 189
Query: 846 EEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+Q L I+IATPGRL+D LEN + L + ++V+DEADR++DM F P + +IL
Sbjct: 190 MDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRIL 249
Query: 905 EYMP 908
+ +P
Sbjct: 250 KIIP 253
Score = 365 (133.5 bits), Expect = 5.3e-59, Sum P(2) = 5.3e-59
Identities = 80/184 (43%), Positives = 121/184 (65%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL- 1462
++ E +L E+++ + + Y++PTPIQ +AIP L+ DIIG+A+TGSGKT AF +P+L
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 1463 -VWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSR 1520
+W DQ PY A I+APTRELAQQI+E + G+ +G+R+ +VGG++
Sbjct: 142 RLW------------HDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNM 189
Query: 1521 EEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+Q L I+IATPGRL+D LEN + L + ++V+DEADR++DM F P + +IL
Sbjct: 190 MDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRIL 249
Query: 1580 EYMP 1583
+ +P
Sbjct: 250 KIIP 253
Score = 348 (127.6 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 77/169 (45%), Positives = 112/169 (66%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQSLPKIARMED 60
+ + Y++PTPIQ +AIP L+ DIIG+A+TGSGKT AF +P+L +W
Sbjct: 97 KNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLW------------ 144
Query: 61 ADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
DQ PY A I+APTRELAQQI+E + G+ +G+R+ +VGG++ +Q L I+I
Sbjct: 145 HDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIII 204
Query: 120 ATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ATPGRL+D LEN + L + ++V+DEADR++DM F P + +IL+ +P
Sbjct: 205 ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 253
Score = 301 (111.0 bits), Expect = 5.3e-59, Sum P(2) = 5.3e-59
Identities = 73/224 (32%), Positives = 119/224 (53%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R T +F+ATM +++L R+ L P + + + + + Q + ++ K L+ +L
Sbjct: 257 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLL 316
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
N + K +IIF K A+ L+ L ++A LHG Q QR +L+ K G + ILV
Sbjct: 317 NEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILV 376
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+DI V +V+NYD+ + Y HR+GRT RAG+ G ++S ++ D L +
Sbjct: 377 ATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 436
Query: 1791 KQMMISS-PVSTCPPEL-LNHPDAQHKPG--TVMVPKKRREEKI 1830
++++ P + + L D+ K VM +R +EKI
Sbjct: 437 EEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKI 480
Score = 295 (108.9 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 63/184 (34%), Positives = 104/184 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R T +F+ATM +++L R+ L P + + + + + Q + ++ K L+ +L
Sbjct: 257 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLL 316
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
N + K +IIF K A+ L+ L ++A LHG Q QR +L+ K G + ILV
Sbjct: 317 NEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILV 376
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+DI V +V+NYD+ + Y HR+GRT RAG+ G ++S ++ D L +
Sbjct: 377 ATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 436
Query: 1116 KQMM 1119
++++
Sbjct: 437 EEVL 440
Score = 145 (56.1 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 36/121 (29%), Positives = 62/121 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R T +F+ATM +++L R+ L P + + + + + Q + ++ K L+ +L
Sbjct: 257 RTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLL 316
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
N + K +IIF K A+ L+ L ++A LHG Q QR +L+ K G + IL+
Sbjct: 317 NEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILV 376
Query: 362 A 362
A
Sbjct: 377 A 377
Score = 45 (20.9 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
T RAG+ G ++S ++ D L +++++
Sbjct: 412 TARAGRSGKSISLVSQYDLELILRIEEVL 440
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 352 (129.0 bits), Expect = 7.6e-59, Sum P(2) = 7.6e-59
Identities = 75/205 (36%), Positives = 114/205 (55%)
Query: 703 TERDWRIFREDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 760
+ D ++ R I ++G VP PV + LP ++L +E GY PTPIQ QAIP
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
L + ++ A+TGSGKT +FL+P++ + D + P A+++APTREL Q
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHS-EHPSDQRRNPLAMVLAPTRELCVQ 201
Query: 821 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 880
+E++ G L +T LVVGG Q +R++ G E++I TPGR++D+L + L+
Sbjct: 202 VEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNI 261
Query: 881 TYIVLDEADRMIDMGFEPDVQKILE 905
VLDE D M+ GF V +I +
Sbjct: 262 MTFVLDEVDCMLQRGFRDQVMQIFQ 286
Score = 352 (129.0 bits), Expect = 7.6e-59, Sum P(2) = 7.6e-59
Identities = 75/205 (36%), Positives = 114/205 (55%)
Query: 1378 TERDWRIFREDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIP 1435
+ D ++ R I ++G VP PV + LP ++L +E GY PTPIQ QAIP
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 1436 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
L + ++ A+TGSGKT +FL+P++ + D + P A+++APTREL Q
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHS-EHPSDQRRNPLAMVLAPTRELCVQ 201
Query: 1496 IEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQC 1555
+E++ G L +T LVVGG Q +R++ G E++I TPGR++D+L + L+
Sbjct: 202 VEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNI 261
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILE 1580
VLDE D M+ GF V +I +
Sbjct: 262 MTFVLDEVDCMLQRGFRDQVMQIFQ 286
Score = 325 (119.5 bits), Expect = 7.6e-59, Sum P(2) = 7.6e-59
Identities = 70/200 (35%), Positives = 116/200 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
Q ++F+AT+ VE++ S + V IG+ KP + + Q+ + + K++KL ++L
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 351
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
K P +++V+ + GAD+LA + + G A ++HG K ++R + S GG +
Sbjct: 352 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 411
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
LV+T V GRG+D+ V VI +DM +I++Y H IGR R G++G A+ F +DD +LF
Sbjct: 412 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFP 471
Query: 1789 DLKQMMISSPVSTCPPELLN 1808
DL + SS + P EL+N
Sbjct: 472 DLVAALKSSGAAI-PKELIN 490
Score = 313 (115.2 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 66/189 (34%), Positives = 110/189 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
Q ++F+AT+ VE++ S + V IG+ KP + + Q+ + + K++KL ++L
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 351
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
K P +++V+ + GAD+LA + + G A ++HG K ++R + S GG +
Sbjct: 352 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 411
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
LV+T V GRG+D+ V VI +DM +I++Y H IGR R G++G A+ F +DD +LF
Sbjct: 412 LVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFP 471
Query: 1114 DLKQMMISS 1122
DL + SS
Sbjct: 472 DLVAALKSS 480
Score = 312 (114.9 bits), Expect = 7.3e-54, Sum P(2) = 7.3e-54
Identities = 64/163 (39%), Positives = 95/163 (58%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E GY PTPIQ QAIP L + ++ A+TGSGKT +FL+P++ + D
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHS-EHPSDQ 183
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++APTREL Q+E++ G L +T LVVGG Q +R++ G E++I T
Sbjct: 184 RRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGT 243
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
PGR++D+L + L+ VLDE D M+ GF V +I +
Sbjct: 244 PGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQ 286
Score = 165 (63.1 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 35/123 (28%), Positives = 68/123 (55%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q ++F+AT+ VE++ S + V IG+ KP + + Q+ + + K++KL ++L
Sbjct: 292 QVLLFSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILR 351
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
K P +++V+ + GAD+LA + + G A ++HG K ++R + S GG +
Sbjct: 352 SQNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPV 411
Query: 360 LMA 362
L++
Sbjct: 412 LVS 414
Score = 73 (30.8 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 1124 VTGRA---GKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
V GRA G++G A+ F +DD +LF DL + SS + P EL+N
Sbjct: 445 VIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAI-PKELIN 490
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 364 (133.2 bits), Expect = 9.8e-59, Sum P(2) = 9.8e-59
Identities = 77/183 (42%), Positives = 121/183 (66%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+ +KE +L ++LE IE + + +PTPIQ +AIP L+ +DIIG+A+TGSGKT AF +P+L
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
QSL A Q +A+++APTREL QI++ + G+ +G+R+ +VGG+ +
Sbjct: 183 ---QSL------WHAQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMD 233
Query: 848 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
Q L +++ATPGR++D LE+ + L Y+V+DEADR++DM F P + KIL+
Sbjct: 234 QARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKV 293
Query: 907 MPV 909
+P+
Sbjct: 294 IPI 296
Score = 364 (133.2 bits), Expect = 9.8e-59, Sum P(2) = 9.8e-59
Identities = 77/183 (42%), Positives = 121/183 (66%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+ +KE +L ++LE IE + + +PTPIQ +AIP L+ +DIIG+A+TGSGKT AF +P+L
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
QSL A Q +A+++APTREL QI++ + G+ +G+R+ +VGG+ +
Sbjct: 183 ---QSL------WHAQQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMD 233
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
Q L +++ATPGR++D LE+ + L Y+V+DEADR++DM F P + KIL+
Sbjct: 234 QARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKV 293
Query: 1582 MPV 1584
+P+
Sbjct: 294 IPI 296
Score = 340 (124.7 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 108/345 (31%), Positives = 174/345 (50%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE + + +PTPIQ +AIP L+ +DIIG+A+TGSGKT AF +P+L QSL A
Sbjct: 138 IESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL---QSL------WHA 188
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q +A+++APTREL QI++ + G+ +G+R+ +VGG+ +Q L +++AT
Sbjct: 189 QQPYFALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVAT 248
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGR++D LE+ + L Y+V+DEADR++DM F P + KIL+ +P+ K T
Sbjct: 249 PGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPI---KRTTY---- 301
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAED--ENKLLANYNSK 238
A +K + Q + A +Y NL D +N +L + ++
Sbjct: 302 --LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNE 359
Query: 239 KKYRQTVMFTATMPPAVER--LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
+ ++FT T+ A LAR L A G + + ++R+ + S Q
Sbjct: 360 FMGKSIIVFTRTVAHAQRTALLAR-ILGFNAVPLHGQLSQ-SQRLGSLNKFKSNQANILV 417
Query: 297 LMEVLNRGVKKPVI-IFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
+V RG+ P + + +N D A + ++G A GK
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAY-IHRVGRTARAGRSGK 461
Score = 316 (116.3 bits), Expect = 9.8e-59, Sum P(2) = 9.8e-59
Identities = 75/206 (36%), Positives = 113/206 (54%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R T +F+ATM +E+L R+ L P V + S + + + Q + ++++ K L+ +L
Sbjct: 298 RTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL 357
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
N + K +I+F A A LG+NA LHG Q QR +LN K +ILV
Sbjct: 358 NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+DI V +VINYD+ + Y HR+GRT RAG+ G ++S T+ D ++ +
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 1791 KQMMISS-PVSTCPP-ELLNHPDAQH 1814
+ ++ P PP E+L DA H
Sbjct: 478 ESVLGKKLPKEDKPPKEVL---DALH 500
Score = 310 (114.2 bits), Expect = 4.2e-58, Sum P(2) = 4.2e-58
Identities = 67/184 (36%), Positives = 104/184 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R T +F+ATM +E+L R+ L P V + S + + + Q + ++++ K L+ +L
Sbjct: 298 RTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL 357
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
N + K +I+F A A LG+NA LHG Q QR +LN K +ILV
Sbjct: 358 NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+DI V +VINYD+ + Y HR+GRT RAG+ G ++S T+ D ++ +
Sbjct: 418 ATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRI 477
Query: 1116 KQMM 1119
+ ++
Sbjct: 478 ESVL 481
Score = 157 (60.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R T +F+ATM +E+L R+ L P V + S + + + Q + ++++ K L+ +L
Sbjct: 298 RTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLL 357
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
N + K +I+F A A LG+NA LHG Q QR +LN K +IL+
Sbjct: 358 NEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILV 417
Query: 362 A 362
A
Sbjct: 418 A 418
Score = 54 (24.1 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS-PVSTCPP-ELLNHPDAQH 1173
T RAG+ G ++S T+ D ++ ++ ++ P PP E+L DA H
Sbjct: 453 TARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKEDKPPKEVL---DALH 500
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 344 (126.2 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 76/199 (38%), Positives = 112/199 (56%)
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980
D KLL K QT+MF+AT V+ LA L+ P T+ + + +I+Q VY
Sbjct: 185 DIEKLLLAVKHK---HQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVY 241
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
++E+ KR+ L E++ + V++F K+ A+ LAK L+ G A HG K Q R
Sbjct: 242 WVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARN 301
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
AL G +LVATDVA RG+DI D++ V+N+ + EDY HR+GRTGRAGK G A
Sbjct: 302 KALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTA 361
Query: 1101 VSFCTKDDSHLFYDLKQMM 1119
+S + D +++Q++
Sbjct: 362 ISLVSPKDERFLENIEQLI 380
Score = 344 (126.2 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 76/199 (38%), Positives = 112/199 (56%)
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 1655
D KLL K QT+MF+AT V+ LA L+ P T+ + + +I+Q VY
Sbjct: 185 DIEKLLLAVKHK---HQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVY 241
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
++E+ KR+ L E++ + V++F K+ A+ LAK L+ G A HG K Q R
Sbjct: 242 WVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARN 301
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
AL G +LVATDVA RG+DI D++ V+N+ + EDY HR+GRTGRAGK G A
Sbjct: 302 KALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTA 361
Query: 1776 VSFCTKDDSHLFYDLKQMM 1794
+S + D +++Q++
Sbjct: 362 ISLVSPKDERFLENIEQLI 380
Score = 304 (112.1 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 71/183 (38%), Positives = 110/183 (60%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ++L+ ++ GY TPIQ++AIP+ Q D++ A+TG+GKT AF LP+L I
Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67
Query: 795 KIARM----------ED---ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841
A+ E+ + Q A+I+ PTRELA Q+ + +F L I++ +V G
Sbjct: 68 HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYG 127
Query: 842 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 901
G Q L+ G ++++ATPGRL++ L R + L+Q ++VLDEADRM+DMGF D++
Sbjct: 128 GGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187
Query: 902 KIL 904
K+L
Sbjct: 188 KLL 190
Score = 304 (112.1 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 71/183 (38%), Positives = 110/183 (60%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ++L+ ++ GY TPIQ++AIP+ Q D++ A+TG+GKT AF LP+L I
Sbjct: 8 LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67
Query: 1470 KIARM----------ED---ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 1516
A+ E+ + Q A+I+ PTRELA Q+ + +F L I++ +V G
Sbjct: 68 HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYG 127
Query: 1517 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 1576
G Q L+ G ++++ATPGRL++ L R + L+Q ++VLDEADRM+DMGF D++
Sbjct: 128 GGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187
Query: 1577 KIL 1579
K+L
Sbjct: 188 KLL 190
Score = 293 (108.2 bits), Expect = 1.8e-57, Sum P(2) = 1.8e-57
Identities = 69/175 (39%), Positives = 105/175 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM--- 58
++ GY TPIQ++AIP+ Q D++ A+TG+GKT AF LP+L I A+
Sbjct: 16 VKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTT 75
Query: 59 -------ED---ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 108
E+ + Q A+I+ PTRELA Q+ + +F L I++ +V GG Q
Sbjct: 76 STDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQT 135
Query: 109 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
L+ G ++++ATPGRL++ L R + L+Q ++VLDEADRM+DMGF D++K+L
Sbjct: 136 KMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLL 190
Score = 178 (67.7 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 46/136 (33%), Positives = 69/136 (50%)
Query: 227 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 286
D KLL K QT+MF+AT V+ LA L+ P T+ + + +I+Q VY
Sbjct: 185 DIEKLLLAVKHK---HQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVY 241
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
++E+ KR+ L E++ + V++F K+ A+ LAK L+ G A HG K Q R
Sbjct: 242 WVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARN 301
Query: 347 LALNSLKGGSKDILMA 362
AL G +L+A
Sbjct: 302 KALEQFSEGKVRVLVA 317
Score = 61 (26.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAGK G A+S + D +++Q++
Sbjct: 352 TGRAGKSGTAISLVSPKDERFLENIEQLI 380
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 365 (133.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 85/222 (38%), Positives = 131/222 (59%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQ 1652
ED +++N ++ + RQT+MFTAT P V LA +++ P V +G + +RI Q
Sbjct: 315 EDIKTIISNTSNSE--RQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQ 372
Query: 1653 IVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
+V ++++ DK KKL+++L N ++IF KK A + L++ ++ +HG
Sbjct: 373 VVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHG 432
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
Q+QR AL++ K G ++L+ATDVA RG+DI +V +VIN +IEDY HRIGRTG
Sbjct: 433 DLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTG 492
Query: 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMM--ISSPVSTCPPELL 1807
RAG +G A + T+D+ HL L ++ + PV P ELL
Sbjct: 493 RAGAKGTAHTLFTEDEKHLSGALCNILRGANQPV---PEELL 531
Score = 362 (132.5 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 78/199 (39%), Positives = 121/199 (60%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQ 977
ED +++N ++ + RQT+MFTAT P V LA +++ P V +G + +RI Q
Sbjct: 315 EDIKTIISNTSNSE--RQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQ 372
Query: 978 IVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
+V ++++ DK KKL+++L N ++IF KK A + L++ ++ +HG
Sbjct: 373 VVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHG 432
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
Q+QR AL++ K G ++L+ATDVA RG+DI +V +VIN +IEDY HRIGRTG
Sbjct: 433 DLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTG 492
Query: 1093 RAGKEGLAVSFCTKDDSHL 1111
RAG +G A + T+D+ HL
Sbjct: 493 RAGAKGTAHTLFTEDEKHL 511
Score = 304 (112.1 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 73/215 (33%), Positives = 123/215 (57%)
Query: 693 HWTEKS-LDEMTERDWRIFREDYSITIKGGKVPD--PVRNWKEASLPTEILEIIEKIGYA 749
++T+ S L +++ D F D IT++ P+ ++ + L + I + K +
Sbjct: 117 NYTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FD 174
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+PTPIQ + P L +D+IGVAETGSGKT AF +P + I + + +
Sbjct: 175 KPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS-------VL 227
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
++PTRELA QI + + G+ V V GG+S+++Q +++ +V+ATPGRL+D+
Sbjct: 228 CISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDL 286
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+ + + L + Y+VLDEADRM++ GFE D++ I+
Sbjct: 287 INDGAINLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Score = 304 (112.1 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 73/215 (33%), Positives = 123/215 (57%)
Query: 1368 HWTEKS-LDEMTERDWRIFREDYSITIKGGKVPD--PVRNWKEASLPTEILEIIEKIGYA 1424
++T+ S L +++ D F D IT++ P+ ++ + L + I + K +
Sbjct: 117 NYTQSSKLSSVSQSDIDKFLSDNEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FD 174
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+PTPIQ + P L +D+IGVAETGSGKT AF +P + I + + +
Sbjct: 175 KPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS-------VL 227
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
++PTRELA QI + + G+ V V GG+S+++Q +++ +V+ATPGRL+D+
Sbjct: 228 CISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVVATPGRLVDL 286
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+ + + L + Y+VLDEADRM++ GFE D++ I+
Sbjct: 287 INDGAINLGKVNYLVLDEADRMLEKGFEEDIKTII 321
Score = 289 (106.8 bits), Expect = 9.3e-23, Sum P(2) = 9.3e-23
Identities = 96/323 (29%), Positives = 160/323 (49%)
Query: 1 IIEKIG-YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I K+ + +PTPIQ + P L +D+IGVAETGSGKT AF +P + I + +
Sbjct: 166 ITSKLSKFDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS 225
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ ++PTRELA QI + + G+ V V GG+S+++Q +++ +V+
Sbjct: 226 -------VLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTA-NVVV 277
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP--DTED 177
ATPGRL+D++ + + L + Y+VLDEADRM++ GFE D++ I+ + + T
Sbjct: 278 ATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTLMFTAT 337
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPAK-ILEYMPVTNLKPDTEDAEDENKLLANYN 236
E + LAN + TV + K I + + V N K D E + +LL YN
Sbjct: 338 WPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVIN-KFDKE--KKLIQLLRKYN 394
Query: 237 SKKKYRQTVMFTATMPPAVERLARSYLRRP----ATVYIGSVGKPTERIEQIVYILSEQD 292
+ + ++ A R+ ++L+R A ++ G + + +R + S Q
Sbjct: 395 ANESSDNKILIFALYKKEASRI-ENFLKRNRFSVAAIH-GDLSQQ-QRTAALSAFKSGQS 451
Query: 293 KRKKLMEVLNRGVKKP-VIIFVN 314
+V RG+ P V + +N
Sbjct: 452 NLLLATDVAARGLDIPNVKVVIN 474
Score = 199 (75.1 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 46/144 (31%), Positives = 81/144 (56%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQ 283
ED +++N ++ + RQT+MFTAT P V LA +++ P V +G + +RI Q
Sbjct: 315 EDIKTIISNTSNSE--RQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQ 372
Query: 284 IVYILSEQDKRKKLMEVL-----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 338
+V ++++ DK KKL+++L N ++IF KK A + L++ ++ +HG
Sbjct: 373 VVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHG 432
Query: 339 GKGQEQRELALNSLKGGSKDILMA 362
Q+QR AL++ K G ++L+A
Sbjct: 433 DLSQQQRTAALSAFKSGQSNLLLA 456
Score = 60 (26.2 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM--ISSPVSTCPPELL 1166
TGRAG +G A + T+D+ HL L ++ + PV P ELL
Sbjct: 491 TGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPV---PEELL 531
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 334 (122.6 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 74/193 (38%), Positives = 112/193 (58%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979
E+ LLA KKK QT++F+AT P V L + L P + + S T + Q V
Sbjct: 180 EELTALLA-LTPKKK--QTLLFSATFPEQVTTLTQELLNNPIEIQLQSADAST--LVQRV 234
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
+ +++ +K L ++ + + +IFVN K + LA+ L K G A HG KGQ +R
Sbjct: 235 FTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSER 294
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
L+ K G ++L+ATD+A RG+DI+ + +VIN+++ +S DY HRIGR+GRAG+ GL
Sbjct: 295 SRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGL 354
Query: 1100 AVSFCTKDDSHLF 1112
A+S +D H F
Sbjct: 355 AISLIDHEDYHHF 367
Score = 334 (122.6 bits), Expect = 4.9e-57, Sum P(2) = 4.9e-57
Identities = 74/193 (38%), Positives = 112/193 (58%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
E+ LLA KKK QT++F+AT P V L + L P + + S T + Q V
Sbjct: 180 EELTALLA-LTPKKK--QTLLFSATFPEQVTTLTQELLNNPIEIQLQSADAST--LVQRV 234
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
+ +++ +K L ++ + + +IFVN K + LA+ L K G A HG KGQ +R
Sbjct: 235 FTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSER 294
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
L+ K G ++L+ATD+A RG+DI+ + +VIN+++ +S DY HRIGR+GRAG+ GL
Sbjct: 295 SRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGL 354
Query: 1775 AVSFCTKDDSHLF 1787
A+S +D H F
Sbjct: 355 AISLIDHEDYHHF 367
Score = 299 (110.3 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 67/181 (37%), Positives = 106/181 (58%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
E L T +L + ++ Y +PTPIQ +AIP RD+I A TGSGKT F LP+L ++
Sbjct: 12 ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71
Query: 792 SLPKIARMEDADQGPYA--IIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREE 847
I+ +G + +++ PTRELA+Q+ + + I+T+ V GG+S
Sbjct: 72 E--DISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNI 129
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
Q LR G +I++ATPGRL+D++ + + L++ +VLDEADRM+ +GF ++ +L
Sbjct: 130 QMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALT 189
Query: 908 P 908
P
Sbjct: 190 P 190
Score = 299 (110.3 bits), Expect = 4.9e-57, Sum P(2) = 4.9e-57
Identities = 67/181 (37%), Positives = 106/181 (58%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
E L T +L + ++ Y +PTPIQ +AIP RD+I A TGSGKT F LP+L ++
Sbjct: 12 ELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLR 71
Query: 1467 SLPKIARMEDADQGPYA--IIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREE 1522
I+ +G + +++ PTRELA+Q+ + + I+T+ V GG+S
Sbjct: 72 E--DISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNI 129
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
Q LR G +I++ATPGRL+D++ + + L++ +VLDEADRM+ +GF ++ +L
Sbjct: 130 QMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALT 189
Query: 1583 P 1583
P
Sbjct: 190 P 190
Score = 288 (106.4 bits), Expect = 3.0e-57, Sum P(3) = 3.0e-57
Identities = 63/170 (37%), Positives = 101/170 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++ Y +PTPIQ +AIP RD+I A TGSGKT F LP+L ++ I+
Sbjct: 23 LAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLRE--DISSGSKN 80
Query: 62 DQGPYA--IIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEI 117
+G + +++ PTRELA+Q+ + + I+T+ V GG+S Q LR G +I
Sbjct: 81 SKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDI 140
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
++ATPGRL+D++ + + L++ +VLDEADRM+ +GF ++ +L P
Sbjct: 141 LVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTP 190
Score = 172 (65.6 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 45/137 (32%), Positives = 70/137 (51%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
E+ LLA KKK QT++F+AT P V L + L P + + S T + Q V
Sbjct: 180 EELTALLA-LTPKKK--QTLLFSATFPEQVTTLTQELLNNPIEIQLQSADAST--LVQRV 234
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
+ +++ +K L ++ + + +IFVN K + LA+ L K G A HG KGQ +R
Sbjct: 235 FTVNKGEKTAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSER 294
Query: 346 ELALNSLKGGSKDILMA 362
L+ K G ++L+A
Sbjct: 295 SRVLDGFKAGDIEVLIA 311
Score = 56 (24.8 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLF 1146
+GRAG+ GLA+S +D H F
Sbjct: 346 SGRAGEVGLAISLIDHEDYHHF 367
Score = 44 (20.5 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMP 205
E+ LLA KKK QT++F+AT P
Sbjct: 180 EELTALLA-LTPKKK--QTLLFSATFP 203
Score = 39 (18.8 bits), Expect = 2.1e-58, Sum P(3) = 2.1e-58
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1299 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 1340
N +R QV+ F I G I A ++ + G +KR+
Sbjct: 374 NKFRLKREQVEGFEAAEITGDSILAVEKPMAAPEGTGKKKRK 415
Score = 39 (18.8 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 624 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 665
N +R QV+ F I G I A ++ + G +KR+
Sbjct: 374 NKFRLKREQVEGFEAAEITGDSILAVEKPMAAPEGTGKKKRK 415
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 314 (115.6 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 70/185 (37%), Positives = 108/185 (58%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V ++ E + + + ++GY PTP+Q IP L RD++ A TGSGKT AF LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 787 LVWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGL 843
L Q L + A+ D G +++ PTRELAQQ+ + + + ++ V GG+
Sbjct: 68 L---QRLSE-AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
S Q LR G ++++ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 904 LEYMP 908
L +P
Sbjct: 184 LAALP 188
Score = 314 (115.6 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
Identities = 70/185 (37%), Positives = 108/185 (58%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V ++ E + + + ++GY PTP+Q IP L RD++ A TGSGKT AF LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 1462 LVWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGL 1518
L Q L + A+ D G +++ PTRELAQQ+ + + + ++ V GG+
Sbjct: 68 L---QRLSE-AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
S Q LR G ++++ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 1579 LEYMP 1583
L +P
Sbjct: 184 LAALP 188
Score = 313 (115.2 bits), Expect = 7.6e-57, Sum P(3) = 7.6e-57
Identities = 68/169 (40%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY PTP+Q IP L RD++ A TGSGKT AF LPLL Q L + A+ D
Sbjct: 24 LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL---QRLSE-AKSADK 79
Query: 62 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIV 118
G +++ PTRELAQQ+ + + + ++ V GG+S Q LR G +++
Sbjct: 80 SAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVL 139
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
+ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++L +P
Sbjct: 140 VATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP 188
Score = 311 (114.5 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 68/179 (37%), Positives = 103/179 (57%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
L+ATD+A RGIDI + +VIN+D+ +S DY HRIGR+GRAG+ GLAV+ + ++ H F
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
Score = 311 (114.5 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
Identities = 68/179 (37%), Positives = 103/179 (57%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
L+ATD+A RGIDI + +VIN+D+ +S DY HRIGR+GRAG+ GLAV+ + ++ H F
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
Score = 148 (57.2 bits), Expect = 7.6e-43, Sum P(4) = 7.6e-43
Identities = 38/123 (30%), Positives = 61/123 (49%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 360 LMA 362
L+A
Sbjct: 307 LIA 309
Score = 53 (23.7 bits), Expect = 7.6e-43, Sum P(4) = 7.6e-43
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLF 1146
+GRAG+ GLAV+ + ++ H F
Sbjct: 344 SGRAGEAGLAVTLISHEEYHHF 365
Score = 42 (19.8 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1299 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 1340
N I R Q+ F +++ AQ++ Q+K G +KR+
Sbjct: 372 NKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRK 413
Score = 42 (19.8 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 624 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 665
N I R Q+ F +++ AQ++ Q+K G +KR+
Sbjct: 372 NKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRK 413
Score = 41 (19.5 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 193 KYRQTVMFTATMPP------AKILEYMPVT-NLKPDTEDAEDENKLLANYNSK 238
+ +QT++F+AT P K+L + P+ +L+ + E ++ + N K
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLL-HQPLEYHLQSEQESTIEQRVITVNREQK 240
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 314 (115.6 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 70/185 (37%), Positives = 108/185 (58%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
V ++ E + + + ++GY PTP+Q IP L RD++ A TGSGKT AF LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 787 LVWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGL 843
L Q L + A+ D G +++ PTRELAQQ+ + + + ++ V GG+
Sbjct: 68 L---QRLSE-AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
S Q LR G ++++ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 904 LEYMP 908
L +P
Sbjct: 184 LAALP 188
Score = 314 (115.6 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
Identities = 70/185 (37%), Positives = 108/185 (58%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
V ++ E + + + ++GY PTP+Q IP L RD++ A TGSGKT AF LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 1462 LVWIQSLPKIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGL 1518
L Q L + A+ D G +++ PTRELAQQ+ + + + ++ V GG+
Sbjct: 68 L---QRLSE-AKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGV 123
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
S Q LR G ++++ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++
Sbjct: 124 SVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 1579 LEYMP 1583
L +P
Sbjct: 184 LAALP 188
Score = 313 (115.2 bits), Expect = 7.6e-57, Sum P(3) = 7.6e-57
Identities = 68/169 (40%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY PTP+Q IP L RD++ A TGSGKT AF LPLL Q L + A+ D
Sbjct: 24 LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLL---QRLSE-AKSADK 79
Query: 62 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLG--IRTVLVVGGLSREEQGFRLRLGCEIV 118
G +++ PTRELAQQ+ + + + ++ V GG+S Q LR G +++
Sbjct: 80 SAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVL 139
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
+ATPGRL+D+L + L L Q + VLDEADRM+ +GF +++++L +P
Sbjct: 140 VATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP 188
Score = 311 (114.5 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 68/179 (37%), Positives = 103/179 (57%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1112
L+ATD+A RGIDI + +VIN+D+ +S DY HRIGR+GRAG+ GLAV+ + ++ H F
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
Score = 311 (114.5 bits), Expect = 3.6e-56, Sum P(2) = 3.6e-56
Identities = 68/179 (37%), Positives = 103/179 (57%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF 1787
L+ATD+A RGIDI + +VIN+D+ +S DY HRIGR+GRAG+ GLAV+ + ++ H F
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
Score = 148 (57.2 bits), Expect = 7.6e-43, Sum P(4) = 7.6e-43
Identities = 38/123 (30%), Positives = 61/123 (49%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
+ +QT++F+AT P V L L +P ++ S + T IEQ V ++ + K L
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQEST--IEQRVITVNREQKTALLAH 246
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ + +IFV+ K + LA+ L K G +A HG K Q R L+ K G +
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306
Query: 360 LMA 362
L+A
Sbjct: 307 LIA 309
Score = 53 (23.7 bits), Expect = 7.6e-43, Sum P(4) = 7.6e-43
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLF 1146
+GRAG+ GLAV+ + ++ H F
Sbjct: 344 SGRAGEAGLAVTLISHEEYHHF 365
Score = 42 (19.8 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 1299 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 1340
N I R Q+ F +++ AQ++ Q+K G +KR+
Sbjct: 372 NKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRK 413
Score = 42 (19.8 bits), Expect = 7.7e-40, Sum P(3) = 7.7e-40
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 624 NSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRR 665
N I R Q+ F +++ AQ++ Q+K G +KR+
Sbjct: 372 NKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRK 413
Score = 41 (19.5 bits), Expect = 8.0e-32, Sum P(4) = 8.0e-32
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 193 KYRQTVMFTATMPP------AKILEYMPVT-NLKPDTEDAEDENKLLANYNSK 238
+ +QT++F+AT P K+L + P+ +L+ + E ++ + N K
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLL-HQPLEYHLQSEQESTIEQRVITVNREQK 240
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 592 (213.5 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 156/426 (36%), Positives = 226/426 (53%)
Query: 708 RIFREDYSITIKGGKVP-DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR 766
+ F + +G V P +++ ++ +P + +E+ GY TPIQ+ +P+ +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEE 824
DI+ A+TGSGKT AFLLP++ + L K A+ G P II+ PTRELA QI E
Sbjct: 337 DILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GAEGGCYPRCIILTPTRELADQIYNE 394
Query: 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884
KF + V GG++ ++ GC I++ T GR+ E+ + L++C Y+V
Sbjct: 395 GRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLV 454
Query: 885 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
LDEADRMID MGF P++++I+ Y N+ P N K RQT+MF+A
Sbjct: 455 LDEADRMIDSMGFGPEIEQIINYK---NM-PK--------------NDK---RQTMMFSA 493
Query: 944 TMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL------- 995
T P +V+ AR LR T + I +G + + Q + K KL+++L
Sbjct: 494 TFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTY 553
Query: 996 ----NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
N V K I+FV Q+K AD LA + A T+HG + Q++R AL + G+
Sbjct: 554 TTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGA 613
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDS 1109
K +L+AT V RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + DD
Sbjct: 614 KPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDV 673
Query: 1110 HLFYDL 1115
+ L
Sbjct: 674 QILPQL 679
Score = 592 (213.5 bits), Expect = 3.0e-56, P = 3.0e-56
Identities = 156/426 (36%), Positives = 226/426 (53%)
Query: 1383 RIFREDYSITIKGGKVP-DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR 1441
+ F + +G V P +++ ++ +P + +E+ GY TPIQ+ +P+ +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 1442 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEE 1499
DI+ A+TGSGKT AFLLP++ + L K A+ G P II+ PTRELA QI E
Sbjct: 337 DILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GAEGGCYPRCIILTPTRELADQIYNE 394
Query: 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559
KF + V GG++ ++ GC I++ T GR+ E+ + L++C Y+V
Sbjct: 395 GRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLV 454
Query: 1560 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
LDEADRMID MGF P++++I+ Y N+ P N K RQT+MF+A
Sbjct: 455 LDEADRMIDSMGFGPEIEQIINYK---NM-PK--------------NDK---RQTMMFSA 493
Query: 1619 TMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL------- 1670
T P +V+ AR LR T + I +G + + Q + K KL+++L
Sbjct: 494 TFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTY 553
Query: 1671 ----NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
N V K I+FV Q+K AD LA + A T+HG + Q++R AL + G+
Sbjct: 554 TTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGA 613
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDS 1784
K +L+AT V RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + DD
Sbjct: 614 KPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDV 673
Query: 1785 HLFYDL 1790
+ L
Sbjct: 674 QILPQL 679
Score = 306 (112.8 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 71/171 (41%), Positives = 102/171 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E+ GY TPIQ+ +P+ +DI+ A+TGSGKT AFLLP++ + L K A
Sbjct: 313 VERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GA 370
Query: 62 DQG--PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ G P II+ PTRELA QI E KF + V GG++ ++ GC I++
Sbjct: 371 EGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIV 430
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY--MP 167
T GR+ E+ + L++C Y+VLDEADRMID MGF P++++I+ Y MP
Sbjct: 431 GTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMP 481
Score = 163 (62.4 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 49/150 (32%), Positives = 75/150 (50%)
Query: 228 ENKLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQI 284
E + + NY + K RQT+MF+AT P +V+ AR LR T + I +G + + Q
Sbjct: 470 EIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQE 529
Query: 285 VYILSEQDKRKKLMEVL-----------NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYN 332
+ K KL+++L N V K I+FV Q+K AD LA +
Sbjct: 530 FELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVP 589
Query: 333 ACTLHGGKGQEQRELALNSLKGGSKDILMA 362
A T+HG + Q++R AL + G+K +L+A
Sbjct: 590 AITIHGAREQKERSAALKLFRSGAKPVLIA 619
Score = 43 (20.2 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDL 1149
TGR G G A SF + DD + L
Sbjct: 654 TGRVGNSGRATSFISLADDVQILPQL 679
Score = 41 (19.5 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
EQ +R +++ G K +I ++G D+ KG++
Sbjct: 598 EQKERSAALKLFRSGAKPVLIATAVVERGLDI--KGVD 633
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 592 (213.5 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 156/426 (36%), Positives = 226/426 (53%)
Query: 708 RIFREDYSITIKGGKVP-DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR 766
+ F + +G V P +++ ++ +P + +E+ GY TPIQ+ +P+ +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 767 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEE 824
DI+ A+TGSGKT AFLLP++ + L K A+ G P II+ PTRELA QI E
Sbjct: 337 DILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GAEGGCYPRCIILTPTRELADQIYNE 394
Query: 825 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 884
KF + V GG++ ++ GC I++ T GR+ E+ + L++C Y+V
Sbjct: 395 GRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLV 454
Query: 885 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
LDEADRMID MGF P++++I+ Y N+ P N K RQT+MF+A
Sbjct: 455 LDEADRMIDSMGFGPEIEQIINYK---NM-PK--------------NDK---RQTMMFSA 493
Query: 944 TMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL------- 995
T P +V+ AR LR T + I +G + + Q + K KL+++L
Sbjct: 494 TFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTY 553
Query: 996 ----NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
N V K I+FV Q+K AD LA + A T+HG + Q++R AL + G+
Sbjct: 554 TTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGA 613
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDS 1109
K +L+AT V RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + DD
Sbjct: 614 KPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDV 673
Query: 1110 HLFYDL 1115
+ L
Sbjct: 674 QILPQL 679
Score = 592 (213.5 bits), Expect = 3.0e-56, P = 3.0e-56
Identities = 156/426 (36%), Positives = 226/426 (53%)
Query: 1383 RIFREDYSITIKGGKVP-DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR 1441
+ F + +G V P +++ ++ +P + +E+ GY TPIQ+ +P+ +
Sbjct: 277 KFFDASVQLVSRGQPVTIQPCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGK 336
Query: 1442 DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG--PYAIIMAPTRELAQQIEEE 1499
DI+ A+TGSGKT AFLLP++ + L K A+ G P II+ PTRELA QI E
Sbjct: 337 DILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GAEGGCYPRCIILTPTRELADQIYNE 394
Query: 1500 TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV 1559
KF + V GG++ ++ GC I++ T GR+ E+ + L++C Y+V
Sbjct: 395 GRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLV 454
Query: 1560 LDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
LDEADRMID MGF P++++I+ Y N+ P N K RQT+MF+A
Sbjct: 455 LDEADRMIDSMGFGPEIEQIINYK---NM-PK--------------NDK---RQTMMFSA 493
Query: 1619 TMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL------- 1670
T P +V+ AR LR T + I +G + + Q + K KL+++L
Sbjct: 494 TFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDKLLKLLGIDIDTY 553
Query: 1671 ----NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
N V K I+FV Q+K AD LA + A T+HG + Q++R AL + G+
Sbjct: 554 TTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGA 613
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDS 1784
K +L+AT V RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + DD
Sbjct: 614 KPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNSGRATSFISLADDV 673
Query: 1785 HLFYDL 1790
+ L
Sbjct: 674 QILPQL 679
Score = 306 (112.8 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 71/171 (41%), Positives = 102/171 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E+ GY TPIQ+ +P+ +DI+ A+TGSGKT AFLLP++ + L K A
Sbjct: 313 VERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRL-ILEKDLNY-GA 370
Query: 62 DQG--PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ G P II+ PTRELA QI E KF + V GG++ ++ GC I++
Sbjct: 371 EGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIV 430
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY--MP 167
T GR+ E+ + L++C Y+VLDEADRMID MGF P++++I+ Y MP
Sbjct: 431 GTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINYKNMP 481
Score = 163 (62.4 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 49/150 (32%), Positives = 75/150 (50%)
Query: 228 ENKLLANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPAT-VYIGSVGKPTERIEQI 284
E + + NY + K RQT+MF+AT P +V+ AR LR T + I +G + + Q
Sbjct: 470 EIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQE 529
Query: 285 VYILSEQDKRKKLMEVL-----------NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYN 332
+ K KL+++L N V K I+FV Q+K AD LA +
Sbjct: 530 FELCDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVP 589
Query: 333 ACTLHGGKGQEQRELALNSLKGGSKDILMA 362
A T+HG + Q++R AL + G+K +L+A
Sbjct: 590 AITIHGAREQKERSAALKLFRSGAKPVLIA 619
Score = 43 (20.2 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 1125 TGRAGKEGLAVSFCT-KDDSHLFYDL 1149
TGR G G A SF + DD + L
Sbjct: 654 TGRVGNSGRATSFISLADDVQILPQL 679
Score = 41 (19.5 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLE 327
EQ +R +++ G K +I ++G D+ KG++
Sbjct: 598 EQKERSAALKLFRSGAKPVLIATAVVERGLDI--KGVD 633
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 372 (136.0 bits), Expect = 2.1e-57, Sum P(2) = 2.1e-57
Identities = 81/194 (41%), Positives = 117/194 (60%)
Query: 715 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 774
++ + G K P PV ++ S ++E I K Y +PTPIQ AIP L RD++G+A+T
Sbjct: 252 NLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKT 311
Query: 775 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
GSGKT A+L P +V I P + A +GP A+I+ PTRELA Q+ +E KF I
Sbjct: 312 GSGKTAAYLWPAIVHIMDQPDLK----AGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNI 367
Query: 835 RTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893
+ GG S+ EQ L+ G E+V+ TPGR+ID+++ + T++V DEADRM D
Sbjct: 368 NPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFD 427
Query: 894 MGFEPDVQKILEYM 907
MGFE V+ I +++
Sbjct: 428 MGFEAQVKSISDHV 441
Score = 372 (136.0 bits), Expect = 2.1e-57, Sum P(2) = 2.1e-57
Identities = 81/194 (41%), Positives = 117/194 (60%)
Query: 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 1449
++ + G K P PV ++ S ++E I K Y +PTPIQ AIP L RD++G+A+T
Sbjct: 252 NLRVGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKT 311
Query: 1450 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
GSGKT A+L P +V I P + A +GP A+I+ PTRELA Q+ +E KF I
Sbjct: 312 GSGKTAAYLWPAIVHIMDQPDLK----AGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNI 367
Query: 1510 RTVLVVGGLSREEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568
+ GG S+ EQ L+ G E+V+ TPGR+ID+++ + T++V DEADRM D
Sbjct: 368 NPICAYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFD 427
Query: 1569 MGFEPDVQKILEYM 1582
MGFE V+ I +++
Sbjct: 428 MGFEAQVKSISDHV 441
Score = 345 (126.5 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 74/166 (44%), Positives = 103/166 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I K Y +PTPIQ AIP L RD++G+A+TGSGKT A+L P +V I P + A
Sbjct: 280 IRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDLK----A 335
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL-GCEIVIA 120
+GP A+I+ PTRELA Q+ +E KF I + GG S+ EQ L+ G E+V+
Sbjct: 336 GEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVC 395
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 166
TPGR+ID+++ + T++V DEADRM DMGFE V+ I +++
Sbjct: 396 TPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHV 441
Score = 311 (114.5 bits), Expect = 2.1e-57, Sum P(2) = 2.1e-57
Identities = 78/197 (39%), Positives = 113/197 (57%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 990
RQ +MF+AT VERLAR L P + G VG+ IEQ V+++ QD + +
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRN 504
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
L+E + G V+IFV +K ++ +AK L+ ++ LHG Q +R L + S
Sbjct: 505 LVEFASLG---KVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS 561
Query: 1051 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-- 1108
+ ILVATDVA RG+DI ++ VIN+DMA+ I+ + HRIGRTGRAG +G A + T+ D
Sbjct: 562 Q-ILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIE 620
Query: 1109 --SHLFYDLKQMMISSP 1123
HL +L+ + P
Sbjct: 621 MVGHLVKNLESVSQEVP 637
Score = 311 (114.5 bits), Expect = 2.1e-57, Sum P(2) = 2.1e-57
Identities = 78/197 (39%), Positives = 113/197 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 1665
RQ +MF+AT VERLAR L P + G VG+ IEQ V+++ QD + +
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRN 504
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
L+E + G V+IFV +K ++ +AK L+ ++ LHG Q +R L + S
Sbjct: 505 LVEFASLG---KVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS 561
Query: 1726 KDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD-- 1783
+ ILVATDVA RG+DI ++ VIN+DMA+ I+ + HRIGRTGRAG +G A + T+ D
Sbjct: 562 Q-ILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIE 620
Query: 1784 --SHLFYDLKQMMISSP 1798
HL +L+ + P
Sbjct: 621 MVGHLVKNLESVSQEVP 637
Score = 147 (56.8 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 44/126 (34%), Positives = 67/126 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR-----KK 296
RQ +MF+AT VERLAR L P + G VG+ IEQ V+++ QD + +
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRN 504
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L+E + G V+IFV +K ++ +AK L+ ++ LHG Q +R L + S
Sbjct: 505 LVEFASLG---KVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS 561
Query: 357 KDILMA 362
+ IL+A
Sbjct: 562 Q-ILVA 566
Score = 47 (21.6 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDD----SHLFYDLKQMMISSP 1157
TGRAG +G A + T+ D HL +L+ + P
Sbjct: 601 TGRAGHKGTAYTLVTEKDIEMVGHLVKNLESVSQEVP 637
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 337 (123.7 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 80/223 (35%), Positives = 120/223 (53%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYD 1789
ATDVA RG+D+ V+ V NYD+ + +E Y HRIGRTGRAG GLA++F KD+ HL +
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL--E 357
Query: 1790 LKQMMISSPVSTCPPELLNHP-----DAQHKPGTVMVPKKRRE 1827
+ + +P+ E++ P D KP PKK E
Sbjct: 358 EIEKTLGAPIQR---EIIEQPKIKRVDENGKPLPKPAPKKSGE 397
Score = 329 (120.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 70/177 (39%), Positives = 103/177 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHL 1111
ATDVA RG+D+ V+ V NYD+ + +E Y HRIGRTGRAG GLA++F KD+ HL
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356
Score = 291 (107.5 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 74/183 (40%), Positives = 106/183 (57%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
++N+ E + + + G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSR 845
L I P E +D A+I+APTRELA QI E K I + + GG
Sbjct: 64 LEKID--P-----ESSDV--QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDV 114
Query: 846 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
+Q +L+ IV+ATPGRL+D + + L+ + IVLDEAD+M+ GF D++ IL+
Sbjct: 115 AQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 906 YMP 908
P
Sbjct: 175 ETP 177
Score = 291 (107.5 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 74/183 (40%), Positives = 106/183 (57%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
++N+ E + + + G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSR 1520
L I P E +D A+I+APTRELA QI E K I + + GG
Sbjct: 64 LEKID--P-----ESSDV--QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDV 114
Query: 1521 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+Q +L+ IV+ATPGRL+D + + L+ + IVLDEAD+M+ GF D++ IL+
Sbjct: 115 AQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 1581 YMP 1583
P
Sbjct: 175 ETP 177
Score = 284 (105.0 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 72/163 (44%), Positives = 98/163 (60%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+L I P E +D
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--P-----ESSDV-- 74
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
A+I+APTRELA QI E K I + + GG +Q +L+ IV+ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
L+D + + L+ + IVLDEAD+M+ GF D++ IL+ P
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 155 (59.6 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 38/121 (31%), Positives = 62/121 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 362 A 362
A
Sbjct: 300 A 300
Score = 65 (27.9 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1109 SHLF-YDLKQMMISSPV-----TGRAGKEGLAVSF-CTKDDSHL 1145
+H+F YD+ + + S + TGRAG GLA++F KD+ HL
Sbjct: 314 THVFNYDIPED-VESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356
Score = 39 (18.8 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 6/11 (54%), Positives = 11/11 (100%)
Query: 195 RQTVMFTATMP 205
+QT++F+AT+P
Sbjct: 180 KQTMLFSATIP 190
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 337 (123.7 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 80/223 (35%), Positives = 120/223 (53%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYD 1789
ATDVA RG+D+ V+ V NYD+ + +E Y HRIGRTGRAG GLA++F KD+ HL +
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL--E 357
Query: 1790 LKQMMISSPVSTCPPELLNHP-----DAQHKPGTVMVPKKRRE 1827
+ + +P+ E++ P D KP PKK E
Sbjct: 358 EIEKTLGAPIQR---EIIEQPKIKRVDENGKPLPKPAPKKSGE 397
Score = 329 (120.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 70/177 (39%), Positives = 103/177 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHL 1111
ATDVA RG+D+ V+ V NYD+ + +E Y HRIGRTGRAG GLA++F KD+ HL
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356
Score = 291 (107.5 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 74/183 (40%), Positives = 106/183 (57%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
++N+ E + + + G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSR 845
L I P E +D A+I+APTRELA QI E K I + + GG
Sbjct: 64 LEKID--P-----ESSDV--QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDV 114
Query: 846 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
+Q +L+ IV+ATPGRL+D + + L+ + IVLDEAD+M+ GF D++ IL+
Sbjct: 115 AQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 906 YMP 908
P
Sbjct: 175 ETP 177
Score = 291 (107.5 bits), Expect = 1.6e-56, Sum P(2) = 1.6e-56
Identities = 74/183 (40%), Positives = 106/183 (57%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
++N+ E + + + G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSR 1520
L I P E +D A+I+APTRELA QI E K I + + GG
Sbjct: 64 LEKID--P-----ESSDV--QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDV 114
Query: 1521 EEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
+Q +L+ IV+ATPGRL+D + + L+ + IVLDEAD+M+ GF D++ IL+
Sbjct: 115 AQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILD 174
Query: 1581 YMP 1583
P
Sbjct: 175 ETP 177
Score = 284 (105.0 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 72/163 (44%), Positives = 98/163 (60%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G E TPIQ +AIP+ L +DIIG A+TG+GKTLAF+LP+L I P E +D
Sbjct: 24 GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKID--P-----ESSDV-- 74
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
A+I+APTRELA QI E K I + + GG +Q +L+ IV+ATPGR
Sbjct: 75 QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGR 134
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
L+D + + L+ + IVLDEAD+M+ GF D++ IL+ P
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 177
Score = 155 (59.6 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 38/121 (31%), Positives = 62/121 (51%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+QT++F+AT+P +++LA+ Y+ P + + S + IEQ V +++ K L V+
Sbjct: 180 KQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM 239
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+R +IF K A L L+ LGYN LHG Q +RE + S + L+
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 362 A 362
A
Sbjct: 300 A 300
Score = 65 (27.9 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1109 SHLF-YDLKQMMISSPV-----TGRAGKEGLAVSF-CTKDDSHL 1145
+H+F YD+ + + S + TGRAG GLA++F KD+ HL
Sbjct: 314 THVFNYDIPED-VESYIHRIGRTGRAGGSGLAITFVAAKDEKHL 356
Score = 39 (18.8 bits), Expect = 3.8e-57, Sum P(3) = 3.8e-57
Identities = 6/11 (54%), Positives = 11/11 (100%)
Query: 195 RQTVMFTATMP 205
+QT++F+AT+P
Sbjct: 180 KQTMLFSATIP 190
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 348 (127.6 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 86/216 (39%), Positives = 124/216 (57%)
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTER-IEQIVYI 1656
K++ N K Q + TAT P V +LA + P + IG + IEQ V I
Sbjct: 524 KIMTQVNKNK---QLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVII 580
Query: 1657 LSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
S D +KKL++ L + ++IF + K+ D L K L YNA ++HG K Q +R+
Sbjct: 581 SSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERD 640
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
LN+ K +ILVATDVA RG+DIK++S+VINYD+ +IEDY HRIGRTGRAGK+G +
Sbjct: 641 RILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKS 700
Query: 1776 VSFCTKD---DSHLFYDLKQM--MISSPVSTCPPEL 1806
+ F + D L + K++ +++ T PP+L
Sbjct: 701 ILFFSYDYYMPQKLKF-AKELIKLLNKTNQTVPPQL 735
Score = 346 (126.9 bits), Expect = 5.9e-57, Sum P(4) = 5.9e-57
Identities = 80/187 (42%), Positives = 111/187 (59%)
Query: 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTER-IEQIVYI 981
K++ N K Q + TAT P V +LA + P + IG + IEQ V I
Sbjct: 524 KIMTQVNKNK---QLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVII 580
Query: 982 LSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
S D +KKL++ L + ++IF + K+ D L K L YNA ++HG K Q +R+
Sbjct: 581 SSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERD 640
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
LN+ K +ILVATDVA RG+DIK++S+VINYD+ +IEDY HRIGRTGRAGK+G +
Sbjct: 641 RILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKS 700
Query: 1101 VSFCTKD 1107
+ F + D
Sbjct: 701 ILFFSYD 707
Score = 239 (89.2 bits), Expect = 5.9e-57, Sum P(4) = 5.9e-57
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
Y +I+ PTREL Q+ +E F L I++V V GG+ + Q L+ G +I++ATPGRL
Sbjct: 429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Query: 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+D LEN + L +C Y+V+DEADR++DMGFE ++KI+
Sbjct: 489 LDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIM 526
Score = 239 (89.2 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
Y +I+ PTREL Q+ +E F L I++V V GG+ + Q L+ G +I++ATPGRL
Sbjct: 429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Query: 1542 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+D LEN + L +C Y+V+DEADR++DMGFE ++KI+
Sbjct: 489 LDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIM 526
Score = 239 (89.2 bits), Expect = 2.5e-56, Sum P(4) = 2.5e-56
Identities = 46/98 (46%), Positives = 68/98 (69%)
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
Y +I+ PTREL Q+ +E F L I++V V GG+ + Q L+ G +I++ATPGRL
Sbjct: 429 YGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRL 488
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
+D LEN + L +C Y+V+DEADR++DMGFE ++KI+
Sbjct: 489 LDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIM 526
Score = 163 (62.4 bits), Expect = 1.9e-36, Sum P(4) = 1.9e-36
Identities = 46/136 (33%), Positives = 68/136 (50%)
Query: 230 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTER-IEQIVYI 287
K++ N K Q + TAT P V +LA + P + IG + IEQ V I
Sbjct: 524 KIMTQVNKNK---QLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVII 580
Query: 288 LSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
S D +KKL++ L + ++IF + K+ D L K L YNA ++HG K Q +R+
Sbjct: 581 SSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERD 640
Query: 347 LALNSLKGGSKDILMA 362
LN+ K +IL+A
Sbjct: 641 RILNNYKTDRCNILVA 656
Score = 138 (53.6 bits), Expect = 5.9e-57, Sum P(4) = 5.9e-57
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 719 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGK 778
K G + + + + + IL + ++EPT IQ+ PI L +D+IGVAETGSGK
Sbjct: 279 KDGIIHNIINKFSDVCFHESILNYLNN-KFSEPTAIQKITWPIALSGKDLIGVAETGSGK 337
Query: 779 TLAFLLPLLVWI 790
TLAF+LP + I
Sbjct: 338 TLAFVLPCFMHI 349
Score = 138 (53.6 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 1394 KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGK 1453
K G + + + + + IL + ++EPT IQ+ PI L +D+IGVAETGSGK
Sbjct: 279 KDGIIHNIINKFSDVCFHESILNYLNN-KFSEPTAIQKITWPIALSGKDLIGVAETGSGK 337
Query: 1454 TLAFLLPLLVWI 1465
TLAF+LP + I
Sbjct: 338 TLAFVLPCFMHI 349
Score = 132 (51.5 bits), Expect = 2.5e-56, Sum P(4) = 2.5e-56
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWI 49
++EPT IQ+ PI L +D+IGVAETGSGKTLAF+LP + I
Sbjct: 307 FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHI 349
Score = 49 (22.3 bits), Expect = 5.9e-57, Sum P(4) = 5.9e-57
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 1125 TGRAGKEGLAVSFCTKD---DSHLFYDLKQM--MISSPVSTCPPEL 1165
TGRAGK+G ++ F + D L + K++ +++ T PP+L
Sbjct: 691 TGRAGKKGKSILFFSYDYYMPQKLKF-AKELIKLLNKTNQTVPPQL 735
Score = 38 (18.4 bits), Expect = 1.5e-35, Sum P(4) = 1.5e-35
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 265 RPATVYIGSVGKPTERI-EQIVYILSEQDKRKKLMEV-LNRGVKKPVIIFVNQKKGADVL 322
R + Y G + PT + Q++ + +K + V + GV K I N KKGAD++
Sbjct: 424 RASDTY-GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQIN-NLKKGADII 481
Score = 38 (18.4 bits), Expect = 0.00048, Sum P(3) = 0.00048
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 959 RPATVYIGSVGKPTERI-EQIVYILSEQDKRKKLMEV-LNRGVKKPVIIFVNQKKGADVL 1016
R + Y G + PT + Q++ + +K + V + GV K I N KKGAD++
Sbjct: 424 RASDTY-GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQIN-NLKKGADII 481
Score = 38 (18.4 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 1634 RPATVYIGSVGKPTERI-EQIVYILSEQDKRKKLMEV-LNRGVKKPVIIFVNQKKGADVL 1691
R + Y G + PT + Q++ + +K + V + GV K I N KKGAD++
Sbjct: 424 RASDTY-GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQIN-NLKKGADII 481
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 358 (131.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 81/212 (38%), Positives = 130/212 (61%)
Query: 697 KSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
K + M + D +FR++ +I ++G P PV+ + + LP++IL+I+EK + + IQ
Sbjct: 691 KEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQ 750
Query: 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815
Q IP + RD+I +AETGSGKTL++L P++ + + R D GP +II+ PTR
Sbjct: 751 MQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND---GPISIILTPTR 806
Query: 816 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL--EN- 872
EL+ Q++ E + + I + V GG + Q L+ G EI++ TPGR+ID+L N
Sbjct: 807 ELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNC 866
Query: 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+ LN+ +++VLDEADR++D+GFE + IL
Sbjct: 867 KVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 358 (131.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 81/212 (38%), Positives = 130/212 (61%)
Query: 1372 KSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 1430
K + M + D +FR++ +I ++G P PV+ + + LP++IL+I+EK + + IQ
Sbjct: 691 KEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQ 750
Query: 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490
Q IP + RD+I +AETGSGKTL++L P++ + + R D GP +II+ PTR
Sbjct: 751 MQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND---GPISIILTPTR 806
Query: 1491 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL--EN- 1547
EL+ Q++ E + + I + V GG + Q L+ G EI++ TPGR+ID+L N
Sbjct: 807 ELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNC 866
Query: 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+ LN+ +++VLDEADR++D+GFE + IL
Sbjct: 867 KVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 346 (126.9 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 73/188 (38%), Positives = 107/188 (56%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 993 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
+L+AT V RGIDIK++ +VINY IEDY HRIGRTGR+ G A +F ++
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTK 1081
Query: 1112 FYDLKQMM 1119
YD+ ++
Sbjct: 1082 AYDIYNLL 1089
Score = 346 (126.9 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 73/188 (38%), Positives = 107/188 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 1668 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
+L+AT V RGIDIK++ +VINY IEDY HRIGRTGR+ G A +F ++
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTK 1081
Query: 1787 FYDLKQMM 1794
YD+ ++
Sbjct: 1082 AYDIYNLL 1089
Score = 292 (107.8 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 67/166 (40%), Positives = 102/166 (61%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+EK + + IQ Q IP + RD+I +AETGSGKTL++L P++ + + R D
Sbjct: 737 ILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND 795
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +II+ PTREL+ Q++ E + + I + V GG + Q L+ G EI++
Sbjct: 796 ---GPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVG 852
Query: 121 TPGRLIDVL--EN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGR+ID+L N + LN+ +++VLDEADR++D+GFE + IL
Sbjct: 853 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 198 (74.8 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 299 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 358 DILMA 362
+L+A
Sbjct: 1022 KVLIA 1026
Score = 42 (19.8 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 192 KKYRQTVMFTATMPP-----AKILEYMPV 215
+K +QT M +AT P AK L Y P+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPI 930
Score = 41 (19.5 bits), Expect = 8.5e-56, Sum P(4) = 8.5e-56
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 1244 QDPEEKELNKDKERE 1258
+D ++KE K+KE+E
Sbjct: 172 EDKKKKEKEKEKEKE 186
Score = 39 (18.8 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 168 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLK 219
+TN+K D +N K R F P+KIL+ + N K
Sbjct: 693 ITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFK 744
Score = 38 (18.4 bits), Expect = 1.7e-55, Sum P(4) = 1.7e-55
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1243 EQDPEEKELNKDKERE 1258
++ +EKE K+KER+
Sbjct: 173 DKKKKEKEKEKEKERK 188
Score = 38 (18.4 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGR+ G A +F ++ YD+ ++
Sbjct: 1061 TGRSNNIGYAYTFILPNEYTKAYDIYNLL 1089
Score = 38 (18.4 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 30/151 (19%), Positives = 69/151 (45%)
Query: 155 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK----KYRQTVMFTATMPPAKIL 210
FE DV++ Y P T + ED+N ++ SKK + + T +T + +
Sbjct: 1203 FE-DVKESNIY-PYTIHNSNNNMFEDKNSGISKNMSKKNNTNEKKNTNQYTDITKVEQEI 1260
Query: 211 EYMPVTNLKPDTEDAEDENKLLANYN--SKKKYRQTVMFTATMPPAVERLARSYLRRPAT 268
+ + + + + A+ N+L+ YN S ++ + A +++A + T
Sbjct: 1261 QRIKMNDTMELSLKAKKINELMKTYNFLSLQENHDKFLKNAQYEE-FDKIAEKEALK-VT 1318
Query: 269 VYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
+I E+ +++++ +++D +KKL++
Sbjct: 1319 EHIKD-----EKEKKLIFNKTKEDIKKKLIQ 1344
Score = 37 (18.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 623 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQS 654
+N IYK+ + + + I +K Q D S
Sbjct: 5 FNYIYKDSKEEKKNDKDKDMDIKVKKQDHDDS 36
Score = 37 (18.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1298 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQS 1329
+N IYK+ + + + I +K Q D S
Sbjct: 5 FNYIYKDSKEEKKNDKDKDMDIKVKKQDHDDS 36
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 358 (131.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 81/212 (38%), Positives = 130/212 (61%)
Query: 697 KSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
K + M + D +FR++ +I ++G P PV+ + + LP++IL+I+EK + + IQ
Sbjct: 691 KEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQ 750
Query: 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815
Q IP + RD+I +AETGSGKTL++L P++ + + R D GP +II+ PTR
Sbjct: 751 MQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND---GPISIILTPTR 806
Query: 816 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL--EN- 872
EL+ Q++ E + + I + V GG + Q L+ G EI++ TPGR+ID+L N
Sbjct: 807 ELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNC 866
Query: 873 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
+ LN+ +++VLDEADR++D+GFE + IL
Sbjct: 867 KVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 358 (131.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 81/212 (38%), Positives = 130/212 (61%)
Query: 1372 KSLDEMTERDWRIFREDY-SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 1430
K + M + D +FR++ +I ++G P PV+ + + LP++IL+I+EK + + IQ
Sbjct: 691 KEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQ 750
Query: 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490
Q IP + RD+I +AETGSGKTL++L P++ + + R D GP +II+ PTR
Sbjct: 751 MQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND---GPISIILTPTR 806
Query: 1491 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL--EN- 1547
EL+ Q++ E + + I + V GG + Q L+ G EI++ TPGR+ID+L N
Sbjct: 807 ELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNC 866
Query: 1548 RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
+ LN+ +++VLDEADR++D+GFE + IL
Sbjct: 867 KVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 346 (126.9 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 73/188 (38%), Positives = 107/188 (56%)
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 993 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
+L+AT V RGIDIK++ +VINY IEDY HRIGRTGR+ G A +F ++
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTK 1081
Query: 1112 FYDLKQMM 1119
YD+ ++
Sbjct: 1082 AYDIYNLL 1089
Score = 346 (126.9 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 73/188 (38%), Positives = 107/188 (56%)
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 1668 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
+L+AT V RGIDIK++ +VINY IEDY HRIGRTGR+ G A +F ++
Sbjct: 1022 KVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTK 1081
Query: 1787 FYDLKQMM 1794
YD+ ++
Sbjct: 1082 AYDIYNLL 1089
Score = 292 (107.8 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 67/166 (40%), Positives = 102/166 (61%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+EK + + IQ Q IP + RD+I +AETGSGKTL++L P++ + + R D
Sbjct: 737 ILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPL-RNND 795
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +II+ PTREL+ Q++ E + + I + V GG + Q L+ G EI++
Sbjct: 796 ---GPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVG 852
Query: 121 TPGRLIDVL--EN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
TPGR+ID+L N + LN+ +++VLDEADR++D+GFE + IL
Sbjct: 853 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNIL 898
Score = 198 (74.8 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 44/125 (35%), Positives = 68/125 (54%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
+K +QT M +AT P ++ +A+ L +P + +G GK I Q V I+ E K +L+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLL 961
Query: 299 EVLNRGVKKP-VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L +K V+IFVN++ AD+L L K YN LHGG+ Q R+ L K
Sbjct: 962 KLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEEN 1021
Query: 358 DILMA 362
+L+A
Sbjct: 1022 KVLIA 1026
Score = 42 (19.8 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 192 KKYRQTVMFTATMPP-----AKILEYMPV 215
+K +QT M +AT P AK L Y P+
Sbjct: 902 RKDKQTAMISATFPNYIQNMAKKLLYKPI 930
Score = 41 (19.5 bits), Expect = 8.5e-56, Sum P(4) = 8.5e-56
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 1244 QDPEEKELNKDKERE 1258
+D ++KE K+KE+E
Sbjct: 172 EDKKKKEKEKEKEKE 186
Score = 39 (18.8 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 168 VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLK 219
+TN+K D +N K R F P+KIL+ + N K
Sbjct: 693 ITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFK 744
Score = 38 (18.4 bits), Expect = 1.7e-55, Sum P(4) = 1.7e-55
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 1243 EQDPEEKELNKDKERE 1258
++ +EKE K+KER+
Sbjct: 173 DKKKKEKEKEKEKERK 188
Score = 38 (18.4 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGR+ G A +F ++ YD+ ++
Sbjct: 1061 TGRSNNIGYAYTFILPNEYTKAYDIYNLL 1089
Score = 38 (18.4 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 30/151 (19%), Positives = 69/151 (45%)
Query: 155 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK----KYRQTVMFTATMPPAKIL 210
FE DV++ Y P T + ED+N ++ SKK + + T +T + +
Sbjct: 1203 FE-DVKESNIY-PYTIHNSNNNMFEDKNSGISKNMSKKNNTNEKKNTNQYTDITKVEQEI 1260
Query: 211 EYMPVTNLKPDTEDAEDENKLLANYN--SKKKYRQTVMFTATMPPAVERLARSYLRRPAT 268
+ + + + + A+ N+L+ YN S ++ + A +++A + T
Sbjct: 1261 QRIKMNDTMELSLKAKKINELMKTYNFLSLQENHDKFLKNAQYEE-FDKIAEKEALK-VT 1318
Query: 269 VYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
+I E+ +++++ +++D +KKL++
Sbjct: 1319 EHIKD-----EKEKKLIFNKTKEDIKKKLIQ 1344
Score = 37 (18.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 623 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQS 654
+N IYK+ + + + I +K Q D S
Sbjct: 5 FNYIYKDSKEEKKNDKDKDMDIKVKKQDHDDS 36
Score = 37 (18.1 bits), Expect = 9.1e-57, Sum P(3) = 9.1e-57
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 1298 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQS 1329
+N IYK+ + + + I +K Q D S
Sbjct: 5 FNYIYKDSKEEKKNDKDKDMDIKVKKQDHDDS 36
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 348 (127.6 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 69/180 (38%), Positives = 116/180 (64%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
++ + L +++ + ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
++ + R + A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q
Sbjct: 62 KLRQ-GQTQRKKRVR----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
RL G ++++ATPGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 348 (127.6 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 69/180 (38%), Positives = 116/180 (64%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
++ + L +++ + ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
++ + R + A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q
Sbjct: 62 KLRQ-GQTQRKKRVR----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
RL G ++++ATPGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 343 (125.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 85/264 (32%), Positives = 149/264 (56%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L ++ + R +
Sbjct: 16 VAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQ-GQTQRKKRV 74
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q RL G ++++AT
Sbjct: 75 R----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P +
Sbjct: 131 PGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP-----------SEV 179
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKI---LEYMPVTNLKP--DTEDAEDENKLLANYN 236
LL + +K R+ TA P +I +N+ T D + ++ LL++
Sbjct: 180 QFLLFSATLSRKVRELAK-TAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
Query: 237 SKKKYRQTVMFTATMPPAVERLAR 260
+++++ Q ++F T A + +++
Sbjct: 239 NEQQWDQALIFIETKHGAAKLVSQ 262
Score = 281 (104.0 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 65/172 (37%), Positives = 91/172 (52%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
+IF+ K GA L LEK G +A H G+ Q R L K G LVA
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
T VA RGIDI +S V+NYD+ ++Y HRIGRTGRA G A+SF +KD+
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Score = 281 (104.0 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 65/172 (37%), Positives = 91/172 (52%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
+IF+ K GA L LEK G +A H G+ Q R L K G LVA
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
T VA RGIDI +S V+NYD+ ++Y HRIGRTGRA G A+SF +KD+
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Score = 130 (50.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/120 (29%), Positives = 54/120 (45%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF+ K GA L LEK G +A H G+ Q R L K G L+A
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Score = 47 (21.6 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRA G A+SF +KD+
Sbjct: 334 TGRAEAVGEAISFVSKDN 351
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 348 (127.6 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 69/180 (38%), Positives = 116/180 (64%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
++ + L +++ + ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
++ + R + A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q
Sbjct: 62 KLRQ-GQTQRKKRVR----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
RL G ++++ATPGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 348 (127.6 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 69/180 (38%), Positives = 116/180 (64%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
++ + L +++ + ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
++ + R + A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q
Sbjct: 62 KLRQ-GQTQRKKRVR----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQ 116
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
RL G ++++ATPGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP 176
Score = 343 (125.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 85/264 (32%), Positives = 149/264 (56%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++GY +PT IQ QAIP+ LQ RD+I A+TG+GKT +F+LP+L ++ + R +
Sbjct: 16 VAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQ-GQTQRKKRV 74
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+I+ PTRELA Q+ E+ ++G G++++ V GG+ + Q RL G ++++AT
Sbjct: 75 R----ALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+ R + + +VLDEADRM+DMGF + KI++ +P +
Sbjct: 131 PGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP-----------SEV 179
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKI---LEYMPVTNLKP--DTEDAEDENKLLANYN 236
LL + +K R+ TA P +I +N+ T D + ++ LL++
Sbjct: 180 QFLLFSATLSRKVRELAK-TAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLI 238
Query: 237 SKKKYRQTVMFTATMPPAVERLAR 260
+++++ Q ++F T A + +++
Sbjct: 239 NEQQWDQALIFIETKHGAAKLVSQ 262
Score = 281 (104.0 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 65/172 (37%), Positives = 91/172 (52%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
+IF+ K GA L LEK G +A H G+ Q R L K G LVA
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
T VA RGIDI +S V+NYD+ ++Y HRIGRTGRA G A+SF +KD+
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Score = 281 (104.0 bits), Expect = 1.2e-56, Sum P(2) = 1.2e-56
Identities = 65/172 (37%), Positives = 91/172 (52%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
+IF+ K GA L LEK G +A H G+ Q R L K G LVA
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
T VA RGIDI +S V+NYD+ ++Y HRIGRTGRA G A+SF +KD+
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDN 351
Score = 130 (50.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 35/120 (29%), Positives = 54/120 (45%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q ++F+AT+ V LA++ +R P + I + I Q + + + K L ++N
Sbjct: 180 QFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLIN 239
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+IF+ K GA L LEK G +A H G+ Q R L K G L+A
Sbjct: 240 EQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Score = 47 (21.6 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRA G A+SF +KD+
Sbjct: 334 TGRAEAVGEAISFVSKDN 351
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 482 (174.7 bits), Expect = 2.1e-56, Sum P(3) = 2.1e-56
Identities = 115/332 (34%), Positives = 182/332 (54%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
K + MT+ +R++ + + G VP P++ W + L ++IL+ ++K+ Y +P PIQ
Sbjct: 365 KDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQA 424
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A GP ++MAPTRE
Sbjct: 425 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EAGDGPIGLVMAPTRE 480
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENR 1548
L QQI + KF LGI V V GG +Q L+ G EIV+ TPGR+ID+L +
Sbjct: 481 LVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 540
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L + TY+V+DEADRM DMGFEP + +I++ N++PD + +L + +
Sbjct: 541 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-----NIRPDRQT------VLFSATFPR 589
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
+ P ++ RS + + T + + +ER +++ +L E ++ K++
Sbjct: 590 QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EIRPESERFSRLLELLGEWYEKGKVL- 647
Query: 1669 VLNRGVKKPVIIF----VNQKKGADVLAKGLE 1696
V R +K + F N V A+GL+
Sbjct: 648 VFVRSQEKSISDFKSDVCNLLIATSVAARGLD 679
Score = 482 (174.7 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 115/332 (34%), Positives = 182/332 (54%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
K + MT+ +R++ + + G VP P++ W + L ++IL+ ++K+ Y +P PIQ
Sbjct: 365 KDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQA 424
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A GP ++MAPTRE
Sbjct: 425 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EAGDGPIGLVMAPTRE 480
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENR 873
L QQI + KF LGI V V GG +Q L+ G EIV+ TPGR+ID+L +
Sbjct: 481 LVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 540
Query: 874 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L + TY+V+DEADRM DMGFEP + +I++ N++PD + +L + +
Sbjct: 541 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-----NIRPDRQT------VLFSATFPR 589
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
+ P ++ RS + + T + + +ER +++ +L E ++ K++
Sbjct: 590 QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EIRPESERFSRLLELLGEWYEKGKVL- 647
Query: 994 VLNRGVKKPVIIF----VNQKKGADVLAKGLE 1021
V R +K + F N V A+GL+
Sbjct: 648 VFVRSQEKSISDFKSDVCNLLIATSVAARGLD 679
Score = 397 (144.8 bits), Expect = 3.6e-55, Sum P(4) = 3.6e-55
Identities = 84/178 (47%), Positives = 115/178 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K+ Y +P PIQ QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EA 466
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP ++MAPTREL QQI + KF LGI V V GG +Q L+ G EIV+ T
Sbjct: 467 GDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCT 526
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L + L + TY+V+DEADRM DMGFEP + +I++ N++PD +
Sbjct: 527 PGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-----NIRPDRQ 579
Score = 198 (74.8 bits), Expect = 2.1e-56, Sum P(3) = 2.1e-56
Identities = 38/88 (43%), Positives = 61/88 (69%)
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
+E +++ K ++L+AT VA RG+D+K++ +V+N+D EDY HR+GRTGRAG++G
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 1774 LAVSFCTKDDSHLFYDL-KQMMISS-PV 1799
AV+F ++DD+ DL K + +S PV
Sbjct: 713 CAVTFISEDDAKYAPDLVKALELSEQPV 740
Score = 198 (74.8 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 38/88 (43%), Positives = 61/88 (69%)
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
+E +++ K ++L+AT VA RG+D+K++ +V+N+D EDY HR+GRTGRAG++G
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 1099 LAVSFCTKDDSHLFYDL-KQMMISS-PV 1124
AV+F ++DD+ DL K + +S PV
Sbjct: 713 CAVTFISEDDAKYAPDLVKALELSEQPV 740
Score = 128 (50.1 bits), Expect = 3.6e-55, Sum P(4) = 3.6e-55
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTV+F+AT P VE LAR L +P + +G + I Q+V I E ++ +L+E+L
Sbjct: 578 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELL 637
Query: 302 NRGVKK-PVIIFV-NQKK 317
+K V++FV +Q+K
Sbjct: 638 GEWYEKGKVLVFVRSQEK 655
Score = 69 (29.3 bits), Expect = 8.2e-42, Sum P(4) = 8.2e-42
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISS-PV 1158
TGRAG++G AV+F ++DD+ DL K + +S PV
Sbjct: 705 TGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPV 740
Score = 53 (23.7 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 136 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 191
L + T IV+ RMID+ KI VT L D D D E ++ +
Sbjct: 516 LKRGTEIVVCTPGRMIDI-LCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 574
Query: 192 KKYRQTVMFTATMP 205
+ RQTV+F+AT P
Sbjct: 575 RPDRQTVLFSATFP 588
Score = 42 (19.8 bits), Expect = 2.1e-56, Sum P(3) = 2.1e-56
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1245 DPEEKELNKDKEREGE 1260
D EE+E +D +R GE
Sbjct: 56 DFEEEEYERDSKRRGE 71
Score = 40 (19.1 bits), Expect = 3.3e-56, Sum P(3) = 3.3e-56
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 913 KPDTEDAEDENKLLANYNSKKKYR 936
K E EDE K LA K++ R
Sbjct: 144 KTRDEQVEDEQKQLAEEVEKRRRR 167
Score = 40 (19.1 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 172 KPDTEDAEDENKLLANYNSKKKYR 195
K E EDE K LA K++ R
Sbjct: 144 KTRDEQVEDEQKQLAEEVEKRRRR 167
Score = 40 (19.1 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 219 KPDTEDAEDENKLLANYNSKKKYR 242
K E EDE K LA K++ R
Sbjct: 144 KTRDEQVEDEQKQLAEEVEKRRRR 167
Score = 40 (19.1 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 1588 KPDTEDAEDENKLLANYNSKKKYR 1611
K E EDE K LA K++ R
Sbjct: 144 KTRDEQVEDEQKQLAEEVEKRRRR 167
Score = 39 (18.8 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 1322 KAQKRDQSKFYGEMLEKRRTE 1342
KA K+ Q+K YG EK +E
Sbjct: 783 KAAKKAQAKEYGFEEEKSDSE 803
Score = 39 (18.8 bits), Expect = 2.1e-39, Sum P(3) = 2.1e-39
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 647 KAQKRDQSKFYGEMLEKRRTE 667
KA K+ Q+K YG EK +E
Sbjct: 783 KAAKKAQAKEYGFEEEKSDSE 803
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 333 (122.3 bits), Expect = 4.5e-56, Sum P(2) = 4.5e-56
Identities = 72/179 (40%), Positives = 110/179 (61%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L E+++ IE++G+ E TPIQ + IP+ LQN+D+IG A+TG+GKT AF +P++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ A Q A+++APTRELA Q+ EE K G +R + + GG E Q
Sbjct: 62 ----EKVNVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L+ +++ TPGR+ID + L L +VLDEAD M++MGF D++ IL ++P
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP 173
Score = 333 (122.3 bits), Expect = 4.5e-56, Sum P(2) = 4.5e-56
Identities = 72/179 (40%), Positives = 110/179 (61%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L E+++ IE++G+ E TPIQ + IP+ LQN+D+IG A+TG+GKT AF +P++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ A Q A+++APTRELA Q+ EE K G +R + + GG E Q
Sbjct: 62 ----EKVNVKNSAVQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L+ +++ TPGR+ID + L L +VLDEAD M++MGF D++ IL ++P
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP 173
Score = 315 (115.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 69/166 (41%), Positives = 102/166 (61%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE++G+ E TPIQ + IP+ LQN+D+IG A+TG+GKT AF +P++ K+ A
Sbjct: 17 IERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIV------EKVNVKNSA 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q A+++APTRELA Q+ EE K G +R + + GG E Q L+ +++ T
Sbjct: 71 VQ---ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGR+ID + L L +VLDEAD M++MGF D++ IL ++P
Sbjct: 128 PGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVP 173
Score = 313 (115.2 bits), Expect = 4.5e-56, Sum P(2) = 4.5e-56
Identities = 74/190 (38%), Positives = 110/190 (57%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979
ED +L++ ++ RQT++F+ATMP + R+A ++ P V + + I+Q
Sbjct: 163 EDIEAILSHVPAE---RQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQ-- 217
Query: 980 YILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035
Y L +K+K ++L R ++ P I+F K+ D LA+ L GY A +HG
Sbjct: 218 YYLEVHEKKK--FDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLS 275
Query: 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095
Q +R L K G+ +ILVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAG
Sbjct: 276 QAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 1096 KEGLAVSFCT 1105
K G+A++F T
Sbjct: 336 KTGVAMTFVT 345
Score = 313 (115.2 bits), Expect = 4.5e-56, Sum P(2) = 4.5e-56
Identities = 74/190 (38%), Positives = 110/190 (57%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
ED +L++ ++ RQT++F+ATMP + R+A ++ P V + + I+Q
Sbjct: 163 EDIEAILSHVPAE---RQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQ-- 217
Query: 1655 YILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710
Y L +K+K ++L R ++ P I+F K+ D LA+ L GY A +HG
Sbjct: 218 YYLEVHEKKK--FDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLS 275
Query: 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770
Q +R L K G+ +ILVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAG
Sbjct: 276 QAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
Query: 1771 KEGLAVSFCT 1780
K G+A++F T
Sbjct: 336 KTGVAMTFVT 345
Score = 157 (60.3 bits), Expect = 6.5e-37, Sum P(2) = 6.5e-37
Identities = 44/141 (31%), Positives = 73/141 (51%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
ED +L++ ++ RQT++F+ATMP + R+A ++ P V + + I+Q
Sbjct: 163 EDIEAILSHVPAE---RQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQ-- 217
Query: 286 YILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 341
Y L +K+K ++L R ++ P I+F K+ D LA+ L GY A +HG
Sbjct: 218 YYLEVHEKKK--FDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLS 275
Query: 342 QEQRELALNSLKGGSKDILMA 362
Q +R L K G+ +IL+A
Sbjct: 276 QAKRLSVLRKFKEGAIEILVA 296
Score = 54 (24.1 bits), Expect = 7.2e-29, Sum P(2) = 7.2e-29
Identities = 46/189 (24%), Positives = 80/189 (42%)
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRK-KLMEVLNRGVKKPVIIFVNQKKGADVLA 1017
R ++ ++ P RI + ++E + K K E+ +++ + V++KK D+L
Sbjct: 176 RQTLLFSATMPDPIRRIAE--RFMNEPELVKVKAKEMTVPNIQQ-YYLEVHEKKKFDILT 232
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELA--LNSLKGGSKDILVATDVAGRGIDIKDVSMVINY 1075
+ L+ + G + ELA LN L+G A GI D+S
Sbjct: 233 RLLDIQAPELAIVFGRTKRRVDELAEALN-LRG----------YAAEGIH-GDLSQAKRL 280
Query: 1076 DMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGK 1130
+ + ++ I GL +S T H++ +D+ Q S TGRAGK
Sbjct: 281 SVLRKFKEGAIEILVATDVAARGLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 1131 EGLAVSFCT 1139
G+A++F T
Sbjct: 337 TGVAMTFVT 345
Score = 47 (21.6 bits), Expect = 5.4e-27, Sum P(3) = 5.4e-27
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMP 205
ED +L++ ++ RQT++F+ATMP
Sbjct: 163 EDIEAILSHVPAE---RQTLLFSATMP 186
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 359 (131.4 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 78/180 (43%), Positives = 117/180 (65%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
WK+ L + + +++ + P+ IQR+AIP+ LQ +D+IG+AETGSGKT AF LP+L
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH- 121
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
A +E+ Q +A+++ PTRELA QI E+ G+ +GI+ +VVGG+ QG
Sbjct: 122 -------ALLENP-QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQG 173
Query: 850 FRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+L I+IATPGRL+D LEN + L Y+V+DEADR+++M FE ++ KIL+ +P
Sbjct: 174 LQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Score = 359 (131.4 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 78/180 (43%), Positives = 117/180 (65%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
WK+ L + + +++ + P+ IQR+AIP+ LQ +D+IG+AETGSGKT AF LP+L
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH- 121
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
A +E+ Q +A+++ PTRELA QI E+ G+ +GI+ +VVGG+ QG
Sbjct: 122 -------ALLENP-QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQG 173
Query: 1525 FRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+L I+IATPGRL+D LEN + L Y+V+DEADR+++M FE ++ KIL+ +P
Sbjct: 174 LQLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Score = 341 (125.1 bits), Expect = 2.3e-53, Sum P(2) = 2.3e-53
Identities = 75/166 (45%), Positives = 111/166 (66%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+++ + P+ IQR+AIP+ LQ +D+IG+AETGSGKT AF LP+L A +E+
Sbjct: 77 DELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH--------ALLENP- 127
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
Q +A+++ PTRELA QI E+ G+ +GI+ +VVGG+ QG +L I+IATP
Sbjct: 128 QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATP 187
Query: 123 GRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GRL+D LEN + L Y+V+DEADR+++M FE ++ KIL+ +P
Sbjct: 188 GRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP 233
Score = 288 (106.4 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 62/184 (33%), Positives = 103/184 (55%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R+T +F+ATM V++L R+ L+ P V + + + E+++Q + + K L+ +L
Sbjct: 236 RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL 295
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
N +IF + A L LG A LHG Q +R ALN K ++ IL+
Sbjct: 296 NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILI 355
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
+TDVA RG+DI V +V+N+D+ +DY HR+GRT RAG+ G A++ ++ D L+ +
Sbjct: 356 STDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
Query: 1116 KQMM 1119
+ ++
Sbjct: 416 EHLL 419
Score = 288 (106.4 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
Identities = 62/184 (33%), Positives = 103/184 (55%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R+T +F+ATM V++L R+ L+ P V + + + E+++Q + + K L+ +L
Sbjct: 236 RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL 295
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
N +IF + A L LG A LHG Q +R ALN K ++ IL+
Sbjct: 296 NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILI 355
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
+TDVA RG+DI V +V+N+D+ +DY HR+GRT RAG+ G A++ ++ D L+ +
Sbjct: 356 STDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRI 415
Query: 1791 KQMM 1794
+ ++
Sbjct: 416 EHLL 419
Score = 136 (52.9 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R+T +F+ATM V++L R+ L+ P V + + + E+++Q + + K L+ +L
Sbjct: 236 RRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHIL 295
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
N +IF + A L LG A LHG Q +R ALN K ++ IL+
Sbjct: 296 NELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILI 355
Query: 362 A 362
+
Sbjct: 356 S 356
Score = 47 (21.6 bits), Expect = 4.1e-38, Sum P(3) = 4.1e-38
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
T RAG+ G A++ ++ D L+ ++ ++
Sbjct: 391 TARAGRSGKAITLVSQYDIELYQRIEHLL 419
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 324 (119.1 bits), Expect = 7.2e-56, Sum P(2) = 7.2e-56
Identities = 68/177 (38%), Positives = 107/177 (60%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
+ +LP ++++ + G+++ TPIQ + +P+ L +D+ G A+TG+GKT AFL+ L
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFT--- 61
Query: 792 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 851
L + R + + P AII+APTREL QIE++ G G + GG+ +Q
Sbjct: 62 KLLRSGRGGER-RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120
Query: 852 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L+ G ++V+ TPGRLID L+ + L + +V+DEADRM DMGF D++ IL +P
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLP 177
Score = 324 (119.1 bits), Expect = 7.2e-56, Sum P(2) = 7.2e-56
Identities = 68/177 (38%), Positives = 107/177 (60%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
+ +LP ++++ + G+++ TPIQ + +P+ L +D+ G A+TG+GKT AFL+ L
Sbjct: 5 DLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFT--- 61
Query: 1467 SLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFR 1526
L + R + + P AII+APTREL QIE++ G G + GG+ +Q
Sbjct: 62 KLLRSGRGGER-RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120
Query: 1527 LRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L+ G ++V+ TPGRLID L+ + L + +V+DEADRM DMGF D++ IL +P
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLP 177
Score = 307 (113.1 bits), Expect = 7.2e-56, Sum P(2) = 7.2e-56
Identities = 74/207 (35%), Positives = 109/207 (52%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ +MF+AT+ V LA ++ P V + ER+EQ++Y + ++K L+ +L
Sbjct: 182 RQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLL 241
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ + +IFVN K+ A+ L + L + + G Q +R L K G I++
Sbjct: 242 RKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMI 301
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS-HLFYD 1789
ATDVA RG+ I VS VINYD+ + EDY HRIGRT RAG EG A+S +D + HL
Sbjct: 302 ATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLEAI 361
Query: 1790 LKQMMISSPVSTCPPELLNHPDAQHKP 1816
+ + PV +L H + KP
Sbjct: 362 HEYIKDKIPVEWAEDDLFVHDFKRVKP 388
Score = 307 (113.1 bits), Expect = 3.4e-52, Sum P(2) = 3.4e-52
Identities = 66/162 (40%), Positives = 98/162 (60%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+++ TPIQ + +P+ L +D+ G A+TG+GKT AFL+ L L + R + + P
Sbjct: 20 GFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFT---KLLRSGRGGER-RHP 75
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
AII+APTREL QIE++ G G + GG+ +Q L+ G ++V+ TPGRL
Sbjct: 76 RAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTPGRL 135
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ID L+ + L + +V+DEADRM DMGF D++ IL +P
Sbjct: 136 IDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLP 177
Score = 300 (110.7 bits), Expect = 3.9e-55, Sum P(2) = 3.9e-55
Identities = 68/177 (38%), Positives = 99/177 (55%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ +MF+AT+ V LA ++ P V + ER+EQ++Y + ++K L+ +L
Sbjct: 182 RQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLL 241
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ + +IFVN K+ A+ L + L + + G Q +R L K G I++
Sbjct: 242 RKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMI 301
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS-HL 1111
ATDVA RG+ I VS VINYD+ + EDY HRIGRT RAG EG A+S +D + HL
Sbjct: 302 ATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHL 358
Score = 137 (53.3 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ +MF+AT+ V LA ++ P V + ER+EQ++Y + ++K L+ +L
Sbjct: 182 RQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLL 241
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ + +IFVN K+ A+ L + L + + G Q +R L K G I++
Sbjct: 242 RKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMI 301
Query: 362 A 362
A
Sbjct: 302 A 302
Score = 55 (24.4 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 1125 TGRAGKEGLAVSFCTKDDS-HLFYDLKQMMISSPVSTCPPELLNHPDAQHKP 1175
T RAG EG A+S +D + HL + + PV +L H + KP
Sbjct: 337 TARAGAEGKAISMADEDGAFHLEAIHEYIKDKIPVEWAEDDLFVHDFKRVKP 388
Score = 50 (22.7 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 31/138 (22%), Positives = 59/138 (42%)
Query: 195 RQTVMFTATMPPAKI---LEYMPVTN---LKPDTEDAEDENKLLANYNSKKKYRQTVMFT 248
RQ +MF+AT+ + E+M V + P+ AE ++L + K+K+ ++
Sbjct: 182 RQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKF--PLLLG 239
Query: 249 ATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP 308
+ER + ++ + +++ EQ KR K++E G K P
Sbjct: 240 LLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSG-KLP 298
Query: 309 VIIFVNQKKGADVLAKGL 326
++I DV ++GL
Sbjct: 299 IMI------ATDVASRGL 310
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 366 (133.9 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 84/200 (42%), Positives = 125/200 (62%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
++ I ++G +V P+ +++ SLP + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 828
A+TGSGKT AFLLP+++ A E + P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVIMR-------ALFES--KTPSALILTPTRELAIQIERQAKELMS 296
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G P ++TVL+VGGL Q +RL+ +++IATPGRL+D+++ + L +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEA 355
Query: 889 DRMIDMGFEPDVQKILEYMP 908
D M+ MGF+ V ILE +P
Sbjct: 356 DTMLKMGFQQQVLDILENIP 375
Score = 366 (133.9 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 84/200 (42%), Positives = 125/200 (62%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
++ I ++G +V P+ +++ SLP + ++K GY PTPIQ Q IP+GL RDI+
Sbjct: 186 KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 1503
A+TGSGKT AFLLP+++ A E + P A+I+ PTRELA QIE + +
Sbjct: 246 SADTGSGKTAAFLLPVIMR-------ALFES--KTPSALILTPTRELAIQIERQAKELMS 296
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G P ++TVL+VGGL Q +RL+ +++IATPGRL+D+++ + L +V+DEA
Sbjct: 297 GLPR-MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEA 355
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
D M+ MGF+ V ILE +P
Sbjct: 356 DTMLKMGFQQQVLDILENIP 375
Score = 332 (121.9 bits), Expect = 1.1e-51, Sum P(2) = 1.1e-51
Identities = 77/168 (45%), Positives = 108/168 (64%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY PTPIQ Q IP+GL RDI+ A+TGSGKT AFLLP+++ A E
Sbjct: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR-------ALFES- 269
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P A+I+ PTRELA QIE + + G P ++TVL+VGGL Q +RL+ +++I
Sbjct: 270 -KTPSALILTPTRELAIQIERQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLQQHVKVII 327
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ATPGRL+D+++ + L +V+DEAD M+ MGF+ V ILE +P
Sbjct: 328 ATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIP 375
Score = 289 (106.8 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 55/155 (35%), Positives = 98/155 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088
+V+T V GRG+D+ V +V+N+DM S+++Y H++
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQL 533
Score = 289 (106.8 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 55/155 (35%), Positives = 98/155 (63%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763
+V+T V GRG+D+ V +V+N+DM S+++Y H++
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQL 533
Score = 197 (74.4 bits), Expect = 5.3e-42, Sum P(2) = 5.3e-42
Identities = 40/123 (32%), Positives = 74/123 (60%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++E+LA L P + G P + QI+ + + K+KKL E+LN
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498
Query: 360 LMA 362
+++
Sbjct: 499 VVS 501
Score = 41 (19.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 1540 RLIDVLENRYLVLNQCTYIVLDEA-----DRMIDMGFEPDVQKIL--EYMPVTNLKPD-- 1590
+++D+LEN + N C I++ +++ V+ I + +P N++
Sbjct: 366 QVLDILEN---IPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIIL 422
Query: 1591 -TEDAEDENKLLANYNSKKKYRQTVM 1615
ED + KL N KK ++ V+
Sbjct: 423 WVEDPAKKKKLFEILNDKKLFKPPVL 448
Score = 41 (19.5 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 865 RLIDVLENRYLVLNQCTYIVLDEA-----DRMIDMGFEPDVQKIL--EYMPVTNLKPD-- 915
+++D+LEN + N C I++ +++ V+ I + +P N++
Sbjct: 366 QVLDILEN---IPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIIL 422
Query: 916 -TEDAEDENKLLANYNSKKKYRQTVM 940
ED + KL N KK ++ V+
Sbjct: 423 WVEDPAKKKKLFEILNDKKLFKPPVL 448
Score = 40 (19.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1401 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 1451
PV + + L ++L E ++KI G ++E + I+R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
Query: 1452 GKTLAFLLPLLV 1463
G+ L + LV
Sbjct: 506 GRGLDLISVRLV 517
Score = 40 (19.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 726 PVRNWKEASLPTEIL-EIIEKI-G------YAEPTPIQRQAIPIGLQNRDIIGVAETGS- 776
PV + + L ++L E ++KI G ++E + I+R+ I GL D V TG
Sbjct: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
Query: 777 GKTLAFLLPLLV 788
G+ L + LV
Sbjct: 506 GRGLDLISVRLV 517
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 329 (120.9 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 70/179 (39%), Positives = 111/179 (62%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ +L +++++ I ++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I P+ ++ AI++APTRELA Q+ EE K G + + + GG Q
Sbjct: 65 IN--PESPNIQ-------AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQI 115
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L+ I++ TPGRL+D + R + LN +V+DEAD M++MGF D++ IL +P
Sbjct: 116 RALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVP 174
Score = 329 (120.9 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 70/179 (39%), Positives = 111/179 (62%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ +L +++++ I ++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I P+ ++ AI++APTRELA Q+ EE K G + + + GG Q
Sbjct: 65 IN--PESPNIQ-------AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQI 115
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L+ I++ TPGRL+D + R + LN +V+DEAD M++MGF D++ IL +P
Sbjct: 116 RALKKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVP 174
Score = 323 (118.8 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 72/198 (36%), Positives = 113/198 (57%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979
+D +L+N S+ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 DDIESILSNVPSE---HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFY 220
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
+ E+ K L +L+ + I+F K+ D LA+ L GY A +HG Q +R
Sbjct: 221 LEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKR 280
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
+AL K G+ ++LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK G+
Sbjct: 281 MVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGM 340
Query: 1100 AVSFCTKDDSHLFYDLKQ 1117
A++F T + + ++Q
Sbjct: 341 AMTFITPREKSMLRAIEQ 358
Score = 323 (118.8 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 72/198 (36%), Positives = 113/198 (57%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
+D +L+N S+ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 DDIESILSNVPSE---HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFY 220
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
+ E+ K L +L+ + I+F K+ D LA+ L GY A +HG Q +R
Sbjct: 221 LEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKR 280
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
+AL K G+ ++LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK G+
Sbjct: 281 MVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGM 340
Query: 1775 AVSFCTKDDSHLFYDLKQ 1792
A++F T + + ++Q
Sbjct: 341 AMTFITPREKSMLRAIEQ 358
Score = 316 (116.3 bits), Expect = 3.5e-54, Sum P(2) = 3.5e-54
Identities = 69/166 (41%), Positives = 101/166 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+ I P+ ++
Sbjct: 18 INRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKIN--PESPNIQ-- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
AI++APTRELA Q+ EE K G + + + GG Q L+ I++ T
Sbjct: 74 -----AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGT 128
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D + R + LN +V+DEAD M++MGF D++ IL +P
Sbjct: 129 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVP 174
Score = 162 (62.1 bits), Expect = 8.0e-39, Sum P(3) = 8.0e-39
Identities = 41/137 (29%), Positives = 71/137 (51%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
+D +L+N S+ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 DDIESILSNVPSE---HQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFY 220
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
+ E+ K L +L+ + I+F K+ D LA+ L GY A +HG Q +R
Sbjct: 221 LEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKR 280
Query: 346 ELALNSLKGGSKDILMA 362
+AL K G+ ++L+A
Sbjct: 281 MVALRKFKEGAIEVLVA 297
Score = 58 (25.5 bits), Expect = 8.0e-39, Sum P(3) = 8.0e-39
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQ 1151
TGRAGK G+A++F T + + ++Q
Sbjct: 332 TGRAGKTGMAMTFITPREKSMLRAIEQ 358
Score = 50 (22.7 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMP-PAK 208
+D +L+N S+ QT++F+ATMP P K
Sbjct: 164 DDIESILSNVPSE---HQTLLFSATMPAPIK 191
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 336 (123.3 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 77/198 (38%), Positives = 110/198 (55%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT +F+ATMP A+ R+ R +++ P V I S I Q + + K + L+ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
IIFV K +A+ LE+ GYN+ L+G Q RE L LK G DIL+A
Sbjct: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
TDVA RG+D++ +S+V+NYD+ E Y HRIGRTGRAG+ G A+ F + L +++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 1792 QMM-ISSPVSTCP-PELL 1807
+ M ++ P P ELL
Sbjct: 362 RTMKLTIPEVELPNAELL 379
Score = 333 (122.3 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 72/183 (39%), Positives = 103/183 (56%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT +F+ATMP A+ R+ R +++ P V I S I Q + + K + L+ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
IIFV K +A+ LE+ GYN+ L+G Q RE L LK G DIL+A
Sbjct: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
TDVA RG+D++ +S+V+NYD+ E Y HRIGRTGRAG+ G A+ F + L +++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 1117 QMM 1119
+ M
Sbjct: 362 RTM 364
Score = 325 (119.5 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 76/179 (42%), Positives = 110/179 (61%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
+ L ILE + +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL Q
Sbjct: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL---Q 66
Query: 792 SL-PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQG 849
+L P++ + P +++APTRELA Q+ E F + G+ V + GG + Q
Sbjct: 67 NLDPEL-------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
LR G +IV+ TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Score = 325 (119.5 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 76/179 (42%), Positives = 110/179 (61%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
+ L ILE + +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL Q
Sbjct: 10 DLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL---Q 66
Query: 1467 SL-PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQG 1524
+L P++ + P +++APTRELA Q+ E F + G+ V + GG + Q
Sbjct: 67 NLDPEL-------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
LR G +IV+ TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Score = 310 (114.2 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 72/168 (42%), Positives = 105/168 (62%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL-PKIARMED 60
+ +GY +P+PIQ + IP L RD++G+A+TGSGKT AF LPLL Q+L P++
Sbjct: 21 LNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL---QNLDPEL----- 72
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ P +++APTRELA Q+ E F + G+ V + GG + Q LR G +IV+
Sbjct: 73 --KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGRL+D L+ L L++ + +VLDEAD M+ MGF DV+ I+ +P
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Score = 171 (65.3 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 43/120 (35%), Positives = 60/120 (50%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT +F+ATMP A+ R+ R +++ P V I S I Q + + K + L+ L
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
IIFV K +A+ LE+ GYN+ L+G Q RE L LK G DIL+A
Sbjct: 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Score = 51 (23.0 bits), Expect = 6.1e-37, Sum P(4) = 6.1e-37
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM-ISSPVSTCP-PELL 1166
TGRAG+ G A+ F + L ++++ M ++ P P ELL
Sbjct: 336 TGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379
Score = 43 (20.2 bits), Expect = 1.5e-53, Sum P(3) = 1.5e-53
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 196 QTVMFTATMPPA 207
QT +F+ATMP A
Sbjct: 182 QTALFSATMPEA 193
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 358 (131.1 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 81/200 (40%), Positives = 119/200 (59%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
+ I ++G V P+ +++ P + ++ GY PTPIQ Q IP+GL RD++
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 828
A+TGSGKT AFLLP+ I R + P A+I+ PTRELA QIE + +
Sbjct: 247 SADTGSGKTAAFLLPV---------ITRALCESKTPSALILTPTRELAIQIENQAKELMS 297
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L +V+DEA
Sbjct: 298 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEA 356
Query: 889 DRMIDMGFEPDVQKILEYMP 908
D M+ MGF+ V ILE++P
Sbjct: 357 DTMLKMGFQQQVLDILEHVP 376
Score = 358 (131.1 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 81/200 (40%), Positives = 119/200 (59%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
+ I ++G V P+ +++ P + ++ GY PTPIQ Q IP+GL RD++
Sbjct: 187 KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLA 246
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKF-- 1503
A+TGSGKT AFLLP+ I R + P A+I+ PTRELA QIE + +
Sbjct: 247 SADTGSGKTAAFLLPV---------ITRALCESKTPSALILTPTRELAIQIENQAKELMS 297
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
G P ++TVL+VGGL Q +RLR +++IATPGRL+D+++ + L +V+DEA
Sbjct: 298 GLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEA 356
Query: 1564 DRMIDMGFEPDVQKILEYMP 1583
D M+ MGF+ V ILE++P
Sbjct: 357 DTMLKMGFQQQVLDILEHVP 376
Score = 334 (122.6 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 76/164 (46%), Positives = 104/164 (63%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY PTPIQ Q IP+GL RD++ A+TGSGKT AFLLP+ I R + P
Sbjct: 223 GYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV---------ITRALCESKTP 273
Query: 66 YAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
A+I+ PTRELA QIE + + G P ++TVL+VGGL Q +RLR +++IATPG
Sbjct: 274 SALILTPTRELAIQIENQAKELMSGLPR-MKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 332
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
RL+D+++ + L +V+DEAD M+ MGF+ V ILE++P
Sbjct: 333 RLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVP 376
Score = 296 (109.3 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 58/158 (36%), Positives = 100/158 (63%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 997 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
+V+T V GRG+D+ V +V+N+DM S+++Y H++ RT
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQV-RT 536
Score = 296 (109.3 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 58/158 (36%), Positives = 100/158 (63%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 1672 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
+V+T V GRG+D+ V +V+N+DM S+++Y H++ RT
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQV-RT 536
Score = 202 (76.2 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 41/123 (33%), Positives = 74/123 (60%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++ +AT+P ++E+LA L P + G P + QI+ + E K+KKL E+LN
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439
Query: 303 --RGVKKPVIIFVNQKKGADVLAKGLEKL-GYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ K PV++FV+ K GAD+L++ ++K+ G + ++H K Q +R+ L L G ++
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499
Query: 360 LMA 362
+++
Sbjct: 500 VVS 502
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 334 (122.6 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 86/212 (40%), Positives = 123/212 (58%)
Query: 711 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KF 828
G+A+TGSGKTLA+LLP +V I P + R + GP ++ L T+ KF
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPIVSVLPFFSTLFSVYRGGTDFKF 189
Query: 829 GTPLGIRTVLVVGGLSREEQGFRLR-LG-C-EIVIATPGRLIDVLENRYLVLNQCTYIVL 885
++ V L + +G RL L C EI IATPGR ID LE+ L +CTY+VL
Sbjct: 190 KCS----SLFWVCFLGQSLKGQRLEWLSQCVEICIATPGR-IDFLESGKTNLRRCTYLVL 244
Query: 886 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
DEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 245 DEADRMLDMGFEPQIRKIVD-----QIRPDRQ 271
Score = 334 (122.6 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 86/212 (40%), Positives = 123/212 (58%)
Query: 1386 REDYSITIKGGKV-PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
R IT++GG V P PV + A+ P +++++ + EPTPIQ Q P+ L RD++
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETN-KF 1503
G+A+TGSGKTLA+LLP +V I P + R + GP ++ L T+ KF
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPIVSVLPFFSTLFSVYRGGTDFKF 189
Query: 1504 GTPLGIRTVLVVGGLSREEQGFRLR-LG-C-EIVIATPGRLIDVLENRYLVLNQCTYIVL 1560
++ V L + +G RL L C EI IATPGR ID LE+ L +CTY+VL
Sbjct: 190 KCS----SLFWVCFLGQSLKGQRLEWLSQCVEICIATPGR-IDFLESGKTNLRRCTYLVL 244
Query: 1561 DEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
DEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 245 DEADRMLDMGFEPQIRKIVD-----QIRPDRQ 271
Score = 327 (120.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 994
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 270 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 329
Query: 995 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 330 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 389
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 390 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 443
Score = 327 (120.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 70/174 (40%), Positives = 103/174 (59%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 1669
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 270 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 329
Query: 1670 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 330 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 389
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
IL+ATDVA RG+D++DV VINYD S EDY HRIGRT R+ +G A +F T
Sbjct: 390 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFT 443
Score = 287 (106.1 bits), Expect = 2.0e-50, Sum P(2) = 2.0e-50
Identities = 75/174 (43%), Positives = 103/174 (59%)
Query: 7 YAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPY 66
+ EPTPIQ Q P+ L RD++G+A+TGSGKTLA+LLP +V I P + R + GP
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGD----GPI 167
Query: 67 AIIMAPTRELAQQIEEETN-KFGTPLGIRTVLVVGGLSREEQGFRLR-LG-C-EIVIATP 122
++ L T+ KF ++ V L + +G RL L C EI IATP
Sbjct: 168 VSVLPFFSTLFSVYRGGTDFKFKCS----SLFWVCFLGQSLKGQRLEWLSQCVEICIATP 223
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
GR ID LE+ L +CTY+VLDEADRM+DMGFEP ++KI++ ++PD +
Sbjct: 224 GR-IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD-----QIRPDRQ 271
Score = 172 (65.6 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 41/125 (32%), Positives = 68/125 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQT+M++AT P V +LA +LR + +G++ I QIV + E +K KL+++
Sbjct: 270 RQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 329
Query: 301 LNRGV---KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ + + IIFV K+ D L + + + G+ A +HG K Q +R+ LN + G
Sbjct: 330 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 389
Query: 358 DILMA 362
IL+A
Sbjct: 390 PILIA 394
Score = 43 (20.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 195 RQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
RQT+M++AT P K + + L+ T+ +L AN+N
Sbjct: 270 RQTLMWSATWP--KEVRQLAEDFLRDYTQINVGNLELSANHN 309
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 331 (121.6 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 69/170 (40%), Positives = 100/170 (58%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K Q +F+ATMPPA+ ++A +L+ P + + +V K I Q + +S K L
Sbjct: 188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALER 247
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+ +IIFV + +A+ LE+ GY A L+G Q QRE ++ +K G I
Sbjct: 248 IAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSI 307
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1103
LVATDV RG+DI +S+VINYD+ E Y HRIGRTGRAG+EG++++F
Sbjct: 308 LVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAF 357
Score = 331 (121.6 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 69/170 (40%), Positives = 100/170 (58%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K Q +F+ATMPPA+ ++A +L+ P + + +V K I Q + +S K L
Sbjct: 188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALER 247
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+ +IIFV + +A+ LE+ GY A L+G Q QRE ++ +K G I
Sbjct: 248 IAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSI 307
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF 1778
LVATDV RG+DI +S+VINYD+ E Y HRIGRTGRAG+EG++++F
Sbjct: 308 LVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAF 357
Score = 320 (117.7 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 72/188 (38%), Positives = 109/188 (57%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
P+ V + LP +L + IG+ T IQ IP L +D++G A+TG+GKT AF
Sbjct: 12 PEAVA-FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF- 69
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGG 842
LP +A+++ + + P +++APTRELA Q+ E FG + G+R + GG
Sbjct: 70 --------GLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGG 121
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
S Q +L G ++V+ TPGRL+D L + L L++ VLDEAD M++MGF D+Q
Sbjct: 122 QSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQW 181
Query: 903 ILEYMPVT 910
IL+++P T
Sbjct: 182 ILDHIPKT 189
Score = 320 (117.7 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 72/188 (38%), Positives = 109/188 (57%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
P+ V + LP +L + IG+ T IQ IP L +D++G A+TG+GKT AF
Sbjct: 12 PEAVA-FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF- 69
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGG 1517
LP +A+++ + + P +++APTRELA Q+ E FG + G+R + GG
Sbjct: 70 --------GLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGG 121
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
S Q +L G ++V+ TPGRL+D L + L L++ VLDEAD M++MGF D+Q
Sbjct: 122 QSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQW 181
Query: 1578 ILEYMPVT 1585
IL+++P T
Sbjct: 182 ILDHIPKT 189
Score = 304 (112.1 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 67/166 (40%), Positives = 100/166 (60%)
Query: 5 IGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 64
IG+ T IQ IP L +D++G A+TG+GKT AF LP +A+++ + +
Sbjct: 33 IGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF---------GLPALAKIDTSIKK 83
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
P +++APTRELA Q+ E FG + G+R + GG S Q +L G ++V+ TPG
Sbjct: 84 PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPG 143
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 169
RL+D L + L L++ VLDEAD M++MGF D+Q IL+++P T
Sbjct: 144 RLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKT 189
Score = 171 (65.3 bits), Expect = 1.9e-36, Sum P(3) = 1.9e-36
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K Q +F+ATMPPA+ ++A +L+ P + + +V K I Q + +S K L
Sbjct: 188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALER 247
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+ +IIFV + +A+ LE+ GY A L+G Q QRE ++ +K G I
Sbjct: 248 IAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSI 307
Query: 360 LMA 362
L+A
Sbjct: 308 LVA 310
Score = 52 (23.4 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
Identities = 8/13 (61%), Positives = 13/13 (100%)
Query: 1125 TGRAGKEGLAVSF 1137
TGRAG+EG++++F
Sbjct: 345 TGRAGREGMSIAF 357
Score = 47 (21.6 bits), Expect = 1.3e-23, Sum P(3) = 1.3e-23
Identities = 35/145 (24%), Positives = 63/145 (43%)
Query: 193 KYRQTVMFTATMPPAKILEYMPVTNLK-PDTEDAEDENKLLANYNSKKKYRQTVMFTATM 251
K Q +F+ATMPPA + + LK P+ K AN +Y V M
Sbjct: 188 KTAQMCLFSATMPPA--IRKIANRFLKDPEHIKVAAVKKAKANIT---QYAWKVSGITKM 242
Query: 252 PPAVERLARSYLRRPATVYIGSVGKPT---ERIEQIVY-ILS-----EQDKRKKLMEVLN 302
A+ER+A +++ + E++E+ Y L+ Q +R++ ++ +
Sbjct: 243 T-ALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMK 301
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLE 327
G K +++ DV+A+GL+
Sbjct: 302 SG-KSSILV------ATDVVARGLD 319
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 341 (125.1 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 93/266 (34%), Positives = 143/266 (53%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ + GY P+PIQ QAIP L +D++ A+TG+GKT F LPLL +A+ A
Sbjct: 16 VSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL------ELLAKGHKA 69
Query: 62 DQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
G A+++ PTRELA Q+ E +G L +R+ +V GG+ Q +LR G ++++A
Sbjct: 70 KSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVA 129
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT--NLKPDTEDA 178
TPGRL+D+++ + NQ +VLDEADRM+DMGF D++KIL +P NL +
Sbjct: 130 TPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLM-FSATF 188
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
DE + LA K V + T P + P D ++ LL +
Sbjct: 189 SDEIRELA----KGLVNHPVEISVT--PRNAAATTVKQWICP--VDKTQKSALLIQLIKQ 240
Query: 239 KKYRQTVMFTATMPPAVERLARSYLR 264
+ ++Q ++F+ T A RLA+S ++
Sbjct: 241 ENWQQVLVFSRTKHGA-NRLAKSLIQ 265
Score = 339 (124.4 bits), Expect = 5.3e-55, Sum P(2) = 5.3e-55
Identities = 72/175 (41%), Positives = 108/175 (61%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L + + + + GY P+PIQ QAIP L +D++ A+TG+GKT F LPLL
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL------E 61
Query: 795 KIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+A+ A G A+++ PTRELA Q+ E +G L +R+ +V GG+ Q +LR
Sbjct: 62 LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G ++++ATPGRL+D+++ + NQ +VLDEADRM+DMGF D++KIL +P
Sbjct: 122 HGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176
Score = 339 (124.4 bits), Expect = 6.7e-55, Sum P(2) = 6.7e-55
Identities = 72/175 (41%), Positives = 108/175 (61%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L + + + + GY P+PIQ QAIP L +D++ A+TG+GKT F LPLL
Sbjct: 8 LSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL------E 61
Query: 1470 KIARMEDADQGPY-AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+A+ A G A+++ PTRELA Q+ E +G L +R+ +V GG+ Q +LR
Sbjct: 62 LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLR 121
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G ++++ATPGRL+D+++ + NQ +VLDEADRM+DMGF D++KIL +P
Sbjct: 122 HGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLP 176
Score = 310 (114.2 bits), Expect = 5.3e-55, Sum P(2) = 5.3e-55
Identities = 72/214 (33%), Positives = 115/214 (53%)
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980
D K+LA +K RQ +MF+AT + LA+ + P + + ++Q +
Sbjct: 167 DIKKILALLPAK---RQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWIC 223
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ + K L++++ + + V++F K GA+ LAK L + +A +HG K Q R
Sbjct: 224 PVDKTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGART 283
Query: 1041 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1100
AL K G +LVATD+A RG+DI + V+N+D+ EDY HRIGRTGRAG G A
Sbjct: 284 KALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQA 343
Query: 1101 VSFCTKDDSHLFYDLKQMMISSPVTGRAGKEGLA 1134
VS + ++ L D+++++ + V R EG +
Sbjct: 344 VSLVSSEEIKLLKDIERLI--NRVLERQEVEGFS 375
Score = 309 (113.8 bits), Expect = 6.7e-55, Sum P(2) = 6.7e-55
Identities = 68/199 (34%), Positives = 109/199 (54%)
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 1655
D K+LA +K RQ +MF+AT + LA+ + P + + ++Q +
Sbjct: 167 DIKKILALLPAK---RQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWIC 223
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ + K L++++ + + V++F K GA+ LAK L + +A +HG K Q R
Sbjct: 224 PVDKTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGART 283
Query: 1716 LALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLA 1775
AL K G +LVATD+A RG+DI + V+N+D+ EDY HRIGRTGRAG G A
Sbjct: 284 KALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQA 343
Query: 1776 VSFCTKDDSHLFYDLKQMM 1794
VS + ++ L D+++++
Sbjct: 344 VSLVSSEEIKLLKDIERLI 362
Score = 146 (56.5 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 38/136 (27%), Positives = 66/136 (48%)
Query: 227 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 286
D K+LA +K RQ +MF+AT + LA+ + P + + ++Q +
Sbjct: 167 DIKKILALLPAK---RQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWIC 223
Query: 287 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
+ + K L++++ + + V++F K GA+ LAK L + +A +HG K Q R
Sbjct: 224 PVDKTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGART 283
Query: 347 LALNSLKGGSKDILMA 362
AL K G +L+A
Sbjct: 284 KALADFKSGEVRVLVA 299
Score = 56 (24.8 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGRAG G AVS + ++ L D+++++
Sbjct: 334 TGRAGATGQAVSLVSSEEIKLLKDIERLI 362
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 333 (122.3 bits), Expect = 9.2e-55, Sum P(2) = 9.2e-55
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 919 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 978
A+D ++L+ +Y+Q +F+ATMPPA+ +L+ YL P V + E I Q
Sbjct: 174 ADDVERILSE---TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQS 230
Query: 979 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1038
YI + K L VL + +I+FV K+ + +A+ L G++A + G Q Q
Sbjct: 231 -YIQVAR-KMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQ 288
Query: 1039 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1098
RE + +L+ G DILVATDVA RG+D++ +S V+NYD+ E Y HRIGRTGRAG+ G
Sbjct: 289 RERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG 348
Query: 1099 LAVSFCTKDDSHL 1111
A+ F + + HL
Sbjct: 349 AALIFVSPRELHL 361
Score = 333 (122.3 bits), Expect = 9.2e-55, Sum P(2) = 9.2e-55
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 1594 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 1653
A+D ++L+ +Y+Q +F+ATMPPA+ +L+ YL P V + E I Q
Sbjct: 174 ADDVERILSE---TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQS 230
Query: 1654 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 1713
YI + K L VL + +I+FV K+ + +A+ L G++A + G Q Q
Sbjct: 231 -YIQVAR-KMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQ 288
Query: 1714 RELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEG 1773
RE + +L+ G DILVATDVA RG+D++ +S V+NYD+ E Y HRIGRTGRAG+ G
Sbjct: 289 RERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG 348
Query: 1774 LAVSFCTKDDSHL 1786
A+ F + + HL
Sbjct: 349 AALIFVSPRELHL 361
Score = 317 (116.6 bits), Expect = 9.2e-55, Sum P(2) = 9.2e-55
Identities = 71/171 (41%), Positives = 100/171 (58%)
Query: 739 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798
+L I +GY PT IQ IP + D++G+A+TG+GKT AF +P+L I K+
Sbjct: 24 VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKV-- 81
Query: 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSREEQGFRLRLGCE 857
P A+++ PTRELA Q+ E ++G L VL + GG S Q LR G +
Sbjct: 82 -------PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134
Query: 858 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+V+ TPGR+ID LE L L++ ++VLDEAD M+ MGF DV++IL P
Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETP 185
Score = 317 (116.6 bits), Expect = 9.2e-55, Sum P(2) = 9.2e-55
Identities = 71/171 (41%), Positives = 100/171 (58%)
Query: 1414 ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 1473
+L I +GY PT IQ IP + D++G+A+TG+GKT AF +P+L I K+
Sbjct: 24 VLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKV-- 81
Query: 1474 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSREEQGFRLRLGCE 1532
P A+++ PTRELA Q+ E ++G L VL + GG S Q LR G +
Sbjct: 82 -------PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134
Query: 1533 IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+V+ TPGR+ID LE L L++ ++VLDEAD M+ MGF DV++IL P
Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETP 185
Score = 311 (114.5 bits), Expect = 3.9e-54, Sum P(2) = 3.9e-54
Identities = 70/167 (41%), Positives = 98/167 (58%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I +GY PT IQ IP + D++G+A+TG+GKT AF +P+L I K+
Sbjct: 28 IGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKV------ 81
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSREEQGFRLRLGCEIVIA 120
P A+++ PTRELA Q+ E ++G L VL + GG S Q LR G ++V+
Sbjct: 82 ---PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVG 138
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGR+ID LE L L++ ++VLDEAD M+ MGF DV++IL P
Sbjct: 139 TPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETP 185
Score = 171 (65.3 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 45/138 (32%), Positives = 72/138 (52%)
Query: 225 AEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI 284
A+D ++L+ +Y+Q +F+ATMPPA+ +L+ YL P V + E I Q
Sbjct: 174 ADDVERILSE---TPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQS 230
Query: 285 VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 344
YI + K L VL + +I+FV K+ + +A+ L G++A + G Q Q
Sbjct: 231 -YIQVAR-KMDALTRVLEVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQ 288
Query: 345 RELALNSLKGGSKDILMA 362
RE + +L+ G DIL+A
Sbjct: 289 RERTITALRDGDIDILVA 306
Score = 60 (26.2 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPA 207
A+D ++L+ +Y+Q +F+ATMPPA
Sbjct: 174 ADDVERILSE---TPEYKQVALFSATMPPA 200
Score = 51 (23.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHL 1145
TGRAG+ G A+ F + + HL
Sbjct: 341 TGRAGRSGAALIFVSPRELHL 361
Score = 48 (22.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 263 LRRPATVYIGSVGKPTERIEQIVYILSEQD 292
LRR A V +G+ G+ + +E+ LS D
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVD 158
Score = 48 (22.0 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 957 LRRPATVYIGSVGKPTERIEQIVYILSEQD 986
LRR A V +G+ G+ + +E+ LS D
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVD 158
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 323 (118.8 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 71/179 (39%), Positives = 109/179 (60%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L +++ + I+++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I P+ ++ AI++APTRELA Q+ EE K G R + + GG Q
Sbjct: 65 IN--PESPNIQ-------AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L+ I++ TPGRL+D + R + L +VLDEAD M++MGF D++ IL +P
Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVP 174
Score = 323 (118.8 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 71/179 (39%), Positives = 109/179 (60%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L +++ + I+++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I P+ ++ AI++APTRELA Q+ EE K G R + + GG Q
Sbjct: 65 IN--PESPNIQ-------AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQI 115
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L+ I++ TPGRL+D + R + L +VLDEAD M++MGF D++ IL +P
Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVP 174
Score = 320 (117.7 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 71/198 (35%), Positives = 112/198 (56%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979
ED +L+N ++ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 EDIESILSNVPAE---HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFY 220
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
+ E+ K L +L+ + I+F K+ D L + L GY A +HG Q +R
Sbjct: 221 LEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKR 280
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
+AL K G+ ++LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK G+
Sbjct: 281 MVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGM 340
Query: 1100 AVSFCTKDDSHLFYDLKQ 1117
A++F T + + ++Q
Sbjct: 341 AMTFITPREKDMLRAIEQ 358
Score = 320 (117.7 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 71/198 (35%), Positives = 112/198 (56%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
ED +L+N ++ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 EDIESILSNVPAE---HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFY 220
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
+ E+ K L +L+ + I+F K+ D L + L GY A +HG Q +R
Sbjct: 221 LEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKR 280
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
+AL K G+ ++LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK G+
Sbjct: 281 MVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGM 340
Query: 1775 AVSFCTKDDSHLFYDLKQ 1792
A++F T + + ++Q
Sbjct: 341 AMTFITPREKDMLRAIEQ 358
Score = 314 (115.6 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 70/166 (42%), Positives = 101/166 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+++G+ E TPIQ Q IP+GL N+D+IG A+TG+GKT AF +PL+ I P+ ++
Sbjct: 18 IKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKIN--PESPNIQ-- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
AI++APTRELA Q+ EE K G R + + GG Q L+ I++ T
Sbjct: 74 -----AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGT 128
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
PGRL+D + R + L +VLDEAD M++MGF D++ IL +P
Sbjct: 129 PGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVP 174
Score = 159 (61.0 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 40/137 (29%), Positives = 70/137 (51%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
ED +L+N ++ QT++F+ATMP ++R+A ++ P V + + I+Q
Sbjct: 164 EDIESILSNVPAE---HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFY 220
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
+ E+ K L +L+ + I+F K+ D L + L GY A +HG Q +R
Sbjct: 221 LEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKR 280
Query: 346 ELALNSLKGGSKDILMA 362
+AL K G+ ++L+A
Sbjct: 281 MVALRKFKQGAIEVLVA 297
Score = 58 (25.5 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQ 1151
TGRAGK G+A++F T + + ++Q
Sbjct: 332 TGRAGKTGMAMTFITPREKDMLRAIEQ 358
Score = 53 (23.7 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMP-PAKILEYMPVTN 217
ED +L+N ++ QT++F+ATMP P K + +TN
Sbjct: 164 EDIESILSNVPAE---HQTLLFSATMPAPIKRIAERFMTN 200
Score = 38 (18.4 bits), Expect = 1.6e-27, Sum P(4) = 1.6e-27
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 796 IARMEDADQGPYAIIMAPTRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRL 854
+ R+ D AI+ T+ ++ E N G T GI G L++ ++ LR
Sbjct: 232 LTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIH-----GDLTQAKRMVALRK 286
Query: 855 ---GC-EIVIAT 862
G E+++AT
Sbjct: 287 FKQGAIEVLVAT 298
Score = 38 (18.4 bits), Expect = 2.6e-25, Sum P(3) = 2.6e-25
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 1471 IARMEDADQGPYAIIMAPTRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRL 1529
+ R+ D AI+ T+ ++ E N G T GI G L++ ++ LR
Sbjct: 232 LTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIH-----GDLTQAKRMVALRK 286
Query: 1530 ---GC-EIVIAT 1537
G E+++AT
Sbjct: 287 FKQGAIEVLVAT 298
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 320 (117.7 bits), Expect = 7.0e-54, Sum P(2) = 7.0e-54
Identities = 68/182 (37%), Positives = 114/182 (62%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+++ E + + + +++G+ +P+ IQ+ A+P LQ +D+IG+AETGSGKT AF +P+L
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
QSL D Q + +++ PTRELA QI ++ G+ +G+ ++VGG+
Sbjct: 104 ---QSLL------DHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAA 154
Query: 848 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
Q L I++ATPGRL+D LEN + L ++++DEADR+++M FE ++ KIL+
Sbjct: 155 QAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKV 214
Query: 907 MP 908
+P
Sbjct: 215 IP 216
Score = 320 (117.7 bits), Expect = 7.0e-54, Sum P(2) = 7.0e-54
Identities = 68/182 (37%), Positives = 114/182 (62%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+++ E + + + +++G+ +P+ IQ+ A+P LQ +D+IG+AETGSGKT AF +P+L
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
QSL D Q + +++ PTRELA QI ++ G+ +G+ ++VGG+
Sbjct: 104 ---QSLL------DHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAA 154
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
Q L I++ATPGRL+D LEN + L ++++DEADR+++M FE ++ KIL+
Sbjct: 155 QAMALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKV 214
Query: 1582 MP 1583
+P
Sbjct: 215 IP 216
Score = 316 (116.3 bits), Expect = 7.0e-54, Sum P(2) = 7.0e-54
Identities = 70/181 (38%), Positives = 102/181 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R+T +F+ATM V +L R+ LR PA V + S K + ++Q + + K L+ +L
Sbjct: 219 RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLL 278
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
N I+F +A L +LG A LHG QE+R +LN K +++ILV
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
TDVA RG+DI V MVINYDM +DY HR+GRT RAG+ G+A++ T+ D + +
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
Query: 1116 K 1116
+
Sbjct: 399 E 399
Score = 316 (116.3 bits), Expect = 7.0e-54, Sum P(2) = 7.0e-54
Identities = 70/181 (38%), Positives = 102/181 (56%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R+T +F+ATM V +L R+ LR PA V + S K + ++Q + + K L+ +L
Sbjct: 219 RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLL 278
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
N I+F +A L +LG A LHG QE+R +LN K +++ILV
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
TDVA RG+DI V MVINYDM +DY HR+GRT RAG+ G+A++ T+ D + +
Sbjct: 339 CTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKI 398
Query: 1791 K 1791
+
Sbjct: 399 E 399
Score = 314 (115.6 bits), Expect = 3.6e-53, Sum P(2) = 3.6e-53
Identities = 67/166 (40%), Positives = 107/166 (64%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
+++G+ +P+ IQ+ A+P LQ +D+IG+AETGSGKT AF +P+L QSL D
Sbjct: 60 QRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL---QSLL------DHP 110
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
Q + +++ PTRELA QI ++ G+ +G+ ++VGG+ Q L I++ATP
Sbjct: 111 QAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATP 170
Query: 123 GRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GRL+D LEN + L ++++DEADR+++M FE ++ KIL+ +P
Sbjct: 171 GRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIP 216
Score = 148 (57.2 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R+T +F+ATM V +L R+ LR PA V + S K + ++Q + + K L+ +L
Sbjct: 219 RRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLL 278
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
N I+F +A L +LG A LHG QE+R +LN K +++IL+
Sbjct: 279 NEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILV 338
Score = 46 (21.3 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLK 1150
T RAG+ G+A++ T+ D + ++
Sbjct: 374 TARAGRSGIAITVVTQYDVEAYQKIE 399
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 534 (193.0 bits), Expect = 4.7e-50, P = 4.7e-50
Identities = 135/368 (36%), Positives = 197/368 (53%)
Query: 1471 IARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG 1530
+AR + P ++++ PTRELA Q+ E + + L + L++GG+S +EQ + G
Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123
Query: 1531 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 1590
+++IATPGRL+D E L+L +V+DEADRM+DMGF PD+++I P T
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT----- 178
Query: 1591 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 1650
RQT+ F+ATM P +ER+ ++L PA + + +E I
Sbjct: 179 --------------------RQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETI 218
Query: 1651 EQIVYIL--SEQD-----KRKKLMEVLN-RGVK-KPVIIFVNQKKGADVLAKGLEKLGYN 1701
EQ V + S +D KR L +++ G K IIF N+K D++AK L+K GY+
Sbjct: 219 EQGVVLFKGSRRDREASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYD 278
Query: 1702 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1761
A +HG Q QR L+ + G +LVA+DVA RG+D+ VS V N+D+ EDY H
Sbjct: 279 AAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVH 338
Query: 1762 RIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMV 1821
RIGRTGRAG++G A++ C D D + +I + P L N + KP
Sbjct: 339 RIGRTGRAGRDGKAITLCIPRDEKAL-DAIEKLIQKDI----PRLENPARTEEKPEA--- 390
Query: 1822 PKKRREEK 1829
K RREEK
Sbjct: 391 -KPRREEK 397
Score = 514 (186.0 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
Identities = 122/322 (37%), Positives = 180/322 (55%)
Query: 796 IARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLG 855
+AR + P ++++ PTRELA Q+ E + + L + L++GG+S +EQ + G
Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123
Query: 856 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915
+++IATPGRL+D E L+L +V+DEADRM+DMGF PD+++I P T
Sbjct: 124 VDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT----- 178
Query: 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 975
RQT+ F+ATM P +ER+ ++L PA + + +E I
Sbjct: 179 --------------------RQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETI 218
Query: 976 EQIVYIL--SEQD-----KRKKLMEVLN-RGVK-KPVIIFVNQKKGADVLAKGLEKLGYN 1026
EQ V + S +D KR L +++ G K IIF N+K D++AK L+K GY+
Sbjct: 219 EQGVVLFKGSRRDREASEKRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYD 278
Query: 1027 ACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTH 1086
A +HG Q QR L+ + G +LVA+DVA RG+D+ VS V N+D+ EDY H
Sbjct: 279 AAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVH 338
Query: 1087 RIGRTGRAGKEGLAVSFCTKDD 1108
RIGRTGRAG++G A++ C D
Sbjct: 339 RIGRTGRAGRDGKAITLCIPRD 360
Score = 366 (133.9 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 75/181 (41%), Positives = 115/181 (63%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ E +L ++L+ IE+ GY PTPIQ AIP L+ RD++G+A+TG+GKT +F LP++
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
+ ARM P ++++ PTRELA Q+ E + + L + L++GG+S +EQ
Sbjct: 64 LARGRARARM------PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
+ G +++IATPGRL+D E L+L +V+DEADRM+DMGF PD+++I P
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177
Query: 910 T 910
T
Sbjct: 178 T 178
Score = 366 (133.9 bits), Expect = 3.8e-32, P = 3.8e-32
Identities = 75/181 (41%), Positives = 115/181 (63%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ E +L ++L+ IE+ GY PTPIQ AIP L+ RD++G+A+TG+GKT +F LP++
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
+ ARM P ++++ PTRELA Q+ E + + L + L++GG+S +EQ
Sbjct: 64 LARGRARARM------PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
+ G +++IATPGRL+D E L+L +V+DEADRM+DMGF PD+++I P
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177
Query: 1585 T 1585
T
Sbjct: 178 T 178
Score = 351 (128.6 bits), Expect = 5.2e-53, Sum P(4) = 5.2e-53
Identities = 72/168 (42%), Positives = 107/168 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE+ GY PTPIQ AIP L+ RD++G+A+TG+GKT +F LP++ + ARM
Sbjct: 17 IEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARM--- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P ++++ PTRELA Q+ E + + L + L++GG+S +EQ + G +++IAT
Sbjct: 74 ---PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 169
PGRL+D E L+L +V+DEADRM+DMGF PD+++I P T
Sbjct: 131 PGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT 178
Score = 187 (70.9 bits), Expect = 5.2e-53, Sum P(4) = 5.2e-53
Identities = 47/130 (36%), Positives = 71/130 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL--SEQD-----KR 294
RQT+ F+ATM P +ER+ ++L PA + + +E IEQ V + S +D KR
Sbjct: 179 RQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKR 238
Query: 295 KKLMEVLN-RGVK-KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
L +++ G K IIF N+K D++AK L+K GY+A +HG Q QR L+
Sbjct: 239 AVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGF 298
Query: 353 KGGSKDILMA 362
+ G +L+A
Sbjct: 299 REGKLRLLVA 308
Score = 61 (26.5 bits), Expect = 5.2e-53, Sum P(4) = 5.2e-53
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDAQHKP 1175
TGRAG++G A++ C D D + +I + P L N + KP
Sbjct: 343 TGRAGRDGKAITLCIPRDEKAL-DAIEKLIQKDI----PRLENPARTEEKP 388
Score = 43 (20.2 bits), Expect = 5.2e-53, Sum P(4) = 5.2e-53
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 195 RQTVMFTATMPP 206
RQT+ F+ATM P
Sbjct: 179 RQTLFFSATMAP 190
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 323 (118.8 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 9.4e-53, Sum P(2) = 9.4e-53
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 5.1e-34, Sum P(3) = 5.1e-34
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 323 (118.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 1.1e-33, Sum P(4) = 1.1e-33
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
Score = 37 (18.1 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1244 QDPEEKELNKDKEREG 1259
+D ++ N+D+ REG
Sbjct: 479 RDGRNRDGNRDRNREG 494
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 323 (118.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 1.1e-33, Sum P(4) = 1.1e-33
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
Score = 37 (18.1 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1244 QDPEEKELNKDKEREG 1259
+D ++ N+D+ REG
Sbjct: 479 RDGRNRDGNRDRNREG 494
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 323 (118.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 1.1e-33, Sum P(4) = 1.1e-33
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
Score = 37 (18.1 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1244 QDPEEKELNKDKEREG 1259
+D ++ N+D+ REG
Sbjct: 479 RDGRNRDGNRDRNREG 494
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 323 (118.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 1.1e-33, Sum P(4) = 1.1e-33
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
Score = 37 (18.1 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1244 QDPEEKELNKDKEREG 1259
+D ++ N+D+ REG
Sbjct: 479 RDGRNRDGNRDRNREG 494
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 323 (118.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 1.1e-33, Sum P(4) = 1.1e-33
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 1.4e-26, Sum P(3) = 1.4e-26
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 4.1e-50, Sum P(4) = 4.1e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
Score = 37 (18.1 bits), Expect = 5.7e-52, Sum P(3) = 5.7e-52
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 1244 QDPEEKELNKDKEREG 1259
+D ++ N+D+ REG
Sbjct: 479 RDGRNRDGNRDRNREG 494
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 323 (118.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 910 TN 911
T+
Sbjct: 175 TH 176
Score = 323 (118.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 74/182 (40%), Positives = 109/182 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L +L+ +E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
K+ +++ QG I++APTRELA Q+ EE K G +R + + GG Q
Sbjct: 62 ----DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
L+ I++ TPGR++D + + L L +VLDEAD M++MGF D++ IL +P
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174
Query: 1585 TN 1586
T+
Sbjct: 175 TH 176
Score = 308 (113.5 bits), Expect = 1.7e-50, Sum P(3) = 1.7e-50
Identities = 71/169 (42%), Positives = 102/169 (60%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+E +G+ E TPIQ + IP LQ +DIIG A+TG+GKT AF LPLL K+ +++
Sbjct: 17 VESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLL------DKVDTHKES 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
QG I++APTRELA Q+ EE K G +R + + GG Q L+ I++ T
Sbjct: 71 VQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
PGR++D + + L L +VLDEAD M++MGF D++ IL +P T+
Sbjct: 128 PGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETH 176
Score = 306 (112.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 997 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1052
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1053 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 306 (112.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 70/177 (39%), Positives = 104/177 (58%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 1672 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 1727
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 1728 ILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
+LVATDVA RG+DI V+ V N+D+ + E Y HRIGRTGRAGK+G+A+ F T +S
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRES 349
Score = 147 (56.8 bits), Expect = 6.3e-34, Sum P(3) = 6.3e-34
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
QT++F+ATMP + R+A ++ P + + + I+Q + L Q+K+K +VL
Sbjct: 177 QTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQ--FYLEVQEKKK--FDVLT 232
Query: 303 R--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
R ++ P I+F K+ D L++ L GY A +HG Q +R L K GS +
Sbjct: 233 RLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIE 292
Query: 359 ILMA 362
+L+A
Sbjct: 293 VLVA 296
Score = 62 (26.9 bits), Expect = 4.6e-27, Sum P(2) = 4.6e-27
Identities = 50/188 (26%), Positives = 83/188 (44%)
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
++ ++ P RI + ++ Q + K EV +++ + V +KK DVL + L+
Sbjct: 180 LFSATMPDPIRRIAER-FMTEPQHIKVKAKEVTMPNIQQ-FYLEVQEKKKFDVLTRLLDI 237
Query: 1023 LGYNACTLHGGKGQEQREL--ALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ G + EL ALN L+G A + G K +S++ + S
Sbjct: 238 QSPELAIVFGRTKRRVDELSEALN-LRG-----YAAEGIHGDLTQAKRMSVLRKFKEG-S 290
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF-YDLKQMMISSPV----TGRAGKEGLAV 1135
IE T A + GL +S T H++ +D+ Q S TGRAGK+G+A+
Sbjct: 291 IEVLV----ATDVAAR-GLDISGVT----HVYNFDIPQDPESYVHRIGRTGRAGKKGIAM 341
Query: 1136 SFCTKDDS 1143
F T +S
Sbjct: 342 LFVTPRES 349
Score = 41 (19.5 bits), Expect = 1.7e-50, Sum P(3) = 1.7e-50
Identities = 7/10 (70%), Positives = 10/10 (100%)
Query: 196 QTVMFTATMP 205
QT++F+ATMP
Sbjct: 177 QTLLFSATMP 186
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 486 (176.1 bits), Expect = 5.7e-43, Sum P(2) = 5.7e-43
Identities = 103/223 (46%), Positives = 141/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +MT+ + ++R E IT+KG P P++ W + + +IL ++K GY +PTPIQ Q
Sbjct: 341 LAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQ 400
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 401 AIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRALEEGEGPIAVIMTPTREL 456
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 457 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRV 516
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 517 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 554
Score = 486 (176.1 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 103/223 (46%), Positives = 141/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +MT+ + ++R E IT+KG P P++ W + + +IL ++K GY +PTPIQ Q
Sbjct: 341 LAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQ 400
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 401 AIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRALEEGEGPIAVIMTPTREL 456
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 457 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRV 516
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 517 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 554
Score = 416 (151.5 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 386 LKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRALEE 441
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 442 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 501
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 502 PGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 554
Score = 390 (142.3 bits), Expect = 5.3e-32, P = 5.3e-32
Identities = 102/289 (35%), Positives = 157/289 (54%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 460 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANNGR 515
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 516 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 575
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E++K KL+E+L +K VIIFV++++ AD L
Sbjct: 576 KPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLL 635
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 636 KDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSC 695
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS-SPV 1124
EDY HR GRTGRAG +G A +F T+D + D+ K + +S +P+
Sbjct: 696 PNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPI 744
Score = 390 (142.3 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 102/289 (35%), Positives = 157/289 (54%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 460 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANNGR 515
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 516 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 575
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E++K KL+E+L +K VIIFV++++ AD L
Sbjct: 576 KPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLL 635
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 636 KDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSC 695
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS-SPV 1799
EDY HR GRTGRAG +G A +F T+D + D+ K + +S +P+
Sbjct: 696 PNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPI 744
Score = 215 (80.7 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 50/122 (40%), Positives = 73/122 (59%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E++K KL+E+L
Sbjct: 553 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELL 612
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+K VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 613 GHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLL 672
Query: 361 MA 362
+A
Sbjct: 673 VA 674
Score = 62 (26.9 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 460 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANNGR 515
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 516 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 565
Score = 60 (26.2 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS-SPV 1158
TGRAG +G A +F T+D + D+ K + +S +P+
Sbjct: 709 TGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPI 744
Score = 37 (18.1 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 1243 EQDPEEKELNKDKEREGEAIKE 1264
E D ++ E + E+EG +++
Sbjct: 200 EDDDDDDEETAEGEKEGNEVED 221
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 578 (208.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 142/447 (31%), Positives = 231/447 (51%)
Query: 1370 TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTP 1428
T S+ EM + R+ ++ I IKG P PV W + L T+ + +I EK+ + TP
Sbjct: 224 TVSSMSEMEVEELRLSLDN--IKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTP 281
Query: 1429 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488
IQ QA+P + RD+IG+++TGSGKT+++LLPLL +++ +++ E GP +I+AP
Sbjct: 282 IQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHET---GPMGLILAP 338
Query: 1489 TRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL-- 1545
TRELA QI EE KF IR+V GG ++Q L+ G EIV+ATPGR ID+L
Sbjct: 339 TRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTL 398
Query: 1546 -ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 1604
+ + L + T++V+DEADR+ D+GFEP + +I++ ++PD + +L +
Sbjct: 399 NDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMK-----TVRPDKQC------VLFSA 447
Query: 1605 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 1664
K R + P ++ ++ + E+ + +V ++ E+ +
Sbjct: 448 TFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFF 507
Query: 1665 KLMEVLNRGVKKPV-------IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1717
++ N G V IIFV+ + D ++K L G C +H GK ++R +
Sbjct: 508 DEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMN 567
Query: 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
L K IL+ T+V RG+++ +VS+VI Y+ K+ Y H GRT R + G A++
Sbjct: 568 LEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAIT 627
Query: 1778 FCTKDDSHLFYDLKQMMISSPVSTCPP 1804
D+ Y L + M + P
Sbjct: 628 LLLHDELSGAYILSKAMRDEEIKALDP 654
Score = 574 (207.1 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 141/437 (32%), Positives = 229/437 (52%)
Query: 695 TEKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEII-EKIGYAEPTP 753
T S+ EM + R+ ++ I IKG P PV W + L T+ + +I EK+ + TP
Sbjct: 224 TVSSMSEMEVEELRLSLDN--IKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTP 281
Query: 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813
IQ QA+P + RD+IG+++TGSGKT+++LLPLL +++ +++ E GP +I+AP
Sbjct: 282 IQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHET---GPMGLILAP 338
Query: 814 TRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL-- 870
TRELA QI EE KF IR+V GG ++Q L+ G EIV+ATPGR ID+L
Sbjct: 339 TRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTL 398
Query: 871 -ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 929
+ + L + T++V+DEADR+ D+GFEP + +I++ ++PD + +L +
Sbjct: 399 NDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMK-----TVRPDKQC------VLFSA 447
Query: 930 NSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRK 989
K R + P ++ ++ + E+ + +V ++ E+ +
Sbjct: 448 TFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFF 507
Query: 990 KLMEVLNRGVKKPV-------IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELA 1042
++ N G V IIFV+ + D ++K L G C +H GK ++R +
Sbjct: 508 DEVQSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMN 567
Query: 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
L K IL+ T+V RG+++ +VS+VI Y+ K+ Y H GRT R + G A++
Sbjct: 568 LEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAIT 627
Query: 1103 FCTKDDSHLFYDLKQMM 1119
D+ Y L + M
Sbjct: 628 LLLHDELSGAYILSKAM 644
Score = 362 (132.5 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 75/168 (44%), Positives = 112/168 (66%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I EK+ + TPIQ QA+P + RD+IG+++TGSGKT+++LLPLL +++ +++ E
Sbjct: 270 ITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHET 329
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFG-TPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
GP +I+APTRELA QI EE KF IR+V GG ++Q L+ G EIV+
Sbjct: 330 ---GPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVV 386
Query: 120 ATPGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
ATPGR ID+L + + L + T++V+DEADR+ D+GFEP + +I++
Sbjct: 387 ATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMK 434
Score = 83 (34.3 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 338
ER E + SE D + +E V IIFV+ + D ++K L G C +H
Sbjct: 502 ERSEFFDEVQSENDGQSSDVEE----VDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHA 557
Query: 339 GKGQEQRELALNSLKGGSKDILM 361
GK ++R + L K IL+
Sbjct: 558 GKPYQERLMNLEKFKREKNSILL 580
Score = 76 (31.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYIL-SEQDKRKKLMEV 300
+Q V+F+AT P + A L P ++ I S G E ++Q I SE +K L+++
Sbjct: 440 KQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQL 499
Query: 301 LN 302
++
Sbjct: 500 IH 501
Score = 44 (20.5 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 508 FLTKEERAAEALRKRQAE 525
F ++ER E LRKR+ E
Sbjct: 60 FTERQERVKEELRKRKNE 77
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 486 (176.1 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.1e-15, Sum P(3) = 5.1e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 486 (176.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 486 (176.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 486 (176.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 486 (176.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 486 (176.1 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 486 (176.1 bits), Expect = 2.3e-42, P = 2.3e-42
Identities = 103/223 (46%), Positives = 142/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M++ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 481 (174.4 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
Identities = 103/223 (46%), Positives = 141/223 (63%)
Query: 699 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L +M+ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 481 (174.4 bits), Expect = 8.0e-42, P = 8.0e-42
Identities = 103/223 (46%), Positives = 141/223 (63%)
Query: 1374 LDEMTERDWRIFR-EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L +M+ + +FR E IT+KG P P+++W + + +IL ++K GY +PTPIQ Q
Sbjct: 342 LAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQ 401
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I R + +GP A+IM PTREL
Sbjct: 402 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEEGEGPIAVIMTPTREL 457
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 458 ALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 517
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 518 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 416 (151.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 89/178 (50%), Positives = 116/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K GY +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I R +
Sbjct: 387 LKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD----QRSLEE 442
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+GP A+IM PTRELA QI +E KF LG+R V V GG EQ L+ G EI++ T
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 502
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 555
Score = 388 (141.6 bits), Expect = 8.7e-32, P = 8.7e-32
Identities = 103/295 (34%), Positives = 157/295 (53%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 379 (138.5 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 100/285 (35%), Positives = 152/285 (53%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P A+E LAR L
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILS 576
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L + VIIFV++++ AD L
Sbjct: 577 KPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLL 636
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L + Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 637 KDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSC 696
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL-KQMMIS 1121
EDY HR GRTGRAG +G A +F T+D + D+ K + +S
Sbjct: 697 PNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741
Score = 208 (78.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P A+E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELL 613
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+ VIIFV++++ AD L K L + Y +LHGG Q R+ +N K G+ +L
Sbjct: 614 GHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLL 673
Query: 361 MA 362
+A
Sbjct: 674 VA 675
Score = 66 (28.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+D + D+ K + +S + PP+L
Sbjct: 710 TGRAGNKGYAYTFITEDQARYAGDIIKALELSG--TAVPPDL 749
Score = 63 (27.2 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F LG +V G I + L + I++ RMIDM + +
Sbjct: 461 ITKECKKFSKTLGLRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LAANSGR 516
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPA 207
+ VT + D D D E +++ ++ + RQTVMF+AT P A
Sbjct: 517 VTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRA 566
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 328 (120.5 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 717 TIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGS 776
+ G + D + + +L + IL + ++G+ PTPIQ AIP+ L+ RD +G A+TG+
Sbjct: 15 SFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGT 74
Query: 777 GKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR 835
GKT AF LPLL ++ + P AI+MAPTRELA Q+ E G + G++
Sbjct: 75 GKTAAFSLPLL---------NKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLK 125
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
+ + GG S +Q L+ G IV+ TPGR+ D++ L L++C +LDEAD M+ MG
Sbjct: 126 VLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMG 185
Query: 896 FEPDVQKILEYMP 908
F DV I+E P
Sbjct: 186 FVDDVTWIMEQAP 198
Score = 328 (120.5 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 1392 TIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGS 1451
+ G + D + + +L + IL + ++G+ PTPIQ AIP+ L+ RD +G A+TG+
Sbjct: 15 SFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGT 74
Query: 1452 GKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR 1510
GKT AF LPLL ++ + P AI+MAPTRELA Q+ E G + G++
Sbjct: 75 GKTAAFSLPLL---------NKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLK 125
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
+ + GG S +Q L+ G IV+ TPGR+ D++ L L++C +LDEAD M+ MG
Sbjct: 126 VLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMG 185
Query: 1571 FEPDVQKILEYMP 1583
F DV I+E P
Sbjct: 186 FVDDVTWIMEQAP 198
Score = 312 (114.9 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 70/167 (41%), Positives = 100/167 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++G+ PTPIQ AIP+ L+ RD +G A+TG+GKT AF LPLL ++ +
Sbjct: 41 LTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL---------NKLNLS 91
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P AI+MAPTRELA Q+ E G + G++ + + GG S +Q L+ G IV+
Sbjct: 92 QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVG 151
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGR+ D++ L L++C +LDEAD M+ MGF DV I+E P
Sbjct: 152 TPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAP 198
Score = 305 (112.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 64/186 (34%), Positives = 103/186 (55%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DILVA
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
TDV RG+D+ ++ V NYD+ +E Y HRIGRTGRAG++G A+ + + ++
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Query: 1117 QMMISS 1122
++ SS
Sbjct: 382 RVTRSS 387
Score = 305 (112.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 64/186 (34%), Positives = 103/186 (55%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DILVA
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
TDV RG+D+ ++ V NYD+ +E Y HRIGRTGRAG++G A+ + + ++
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Query: 1792 QMMISS 1797
++ SS
Sbjct: 382 RVTRSS 387
Score = 163 (62.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DIL+A
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Score = 56 (24.8 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 30/137 (21%), Positives = 61/137 (44%)
Query: 196 QTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 255
Q V+F+ATMPP + E + P+ D N+ +A K + + V+ A+
Sbjct: 202 QRVLFSATMPPM-VKEIVERFLRNPECVDVAGSNQTVA----KVEQQYWVVKGVEKDEAM 256
Query: 256 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 315
RL + + V++ + + TER+ ++ + K L + + +++ + + Q
Sbjct: 257 ARLLETEETDASIVFVRT-RQDTERLAD--WLCARGFKAAALHGDIPQSLRERTVDHIKQ 313
Query: 316 KK-----GADVLAKGLE 327
DV+A+GL+
Sbjct: 314 GVIDILVATDVVARGLD 330
Score = 42 (19.8 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGRAG++G A+ + + ++++ SS
Sbjct: 356 TGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 328 (120.5 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 717 TIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGS 776
+ G + D + + +L + IL + ++G+ PTPIQ AIP+ L+ RD +G A+TG+
Sbjct: 15 SFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGT 74
Query: 777 GKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR 835
GKT AF LPLL ++ + P AI+MAPTRELA Q+ E G + G++
Sbjct: 75 GKTAAFSLPLL---------NKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLK 125
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
+ + GG S +Q L+ G IV+ TPGR+ D++ L L++C +LDEAD M+ MG
Sbjct: 126 VLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMG 185
Query: 896 FEPDVQKILEYMP 908
F DV I+E P
Sbjct: 186 FVDDVTWIMEQAP 198
Score = 328 (120.5 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 75/193 (38%), Positives = 111/193 (57%)
Query: 1392 TIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGS 1451
+ G + D + + +L + IL + ++G+ PTPIQ AIP+ L+ RD +G A+TG+
Sbjct: 15 SFSGIPMQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGT 74
Query: 1452 GKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIR 1510
GKT AF LPLL ++ + P AI+MAPTRELA Q+ E G + G++
Sbjct: 75 GKTAAFSLPLL---------NKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLK 125
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
+ + GG S +Q L+ G IV+ TPGR+ D++ L L++C +LDEAD M+ MG
Sbjct: 126 VLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMG 185
Query: 1571 FEPDVQKILEYMP 1583
F DV I+E P
Sbjct: 186 FVDDVTWIMEQAP 198
Score = 312 (114.9 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 70/167 (41%), Positives = 100/167 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++G+ PTPIQ AIP+ L+ RD +G A+TG+GKT AF LPLL ++ +
Sbjct: 41 LTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLL---------NKLNLS 91
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
P AI+MAPTRELA Q+ E G + G++ + + GG S +Q L+ G IV+
Sbjct: 92 QYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVG 151
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGR+ D++ L L++C +LDEAD M+ MGF DV I+E P
Sbjct: 152 TPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAP 198
Score = 305 (112.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 64/186 (34%), Positives = 103/186 (55%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 996
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 997 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1056
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DILVA
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Query: 1057 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1116
TDV RG+D+ ++ V NYD+ +E Y HRIGRTGRAG++G A+ + + ++
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Query: 1117 QMMISS 1122
++ SS
Sbjct: 382 RVTRSS 387
Score = 305 (112.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 64/186 (34%), Positives = 103/186 (55%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 1671
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 1672 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVA 1731
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DILVA
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Query: 1732 TDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
TDV RG+D+ ++ V NYD+ +E Y HRIGRTGRAG++G A+ + + ++
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Query: 1792 QMMISS 1797
++ SS
Sbjct: 382 RVTRSS 387
Score = 163 (62.4 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLN 302
Q V+F+ATMPP V+ + +LR P V + + ++EQ +++ +K + + +L
Sbjct: 202 QRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLE 261
Query: 303 RGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
I+FV ++ + LA L G+ A LHG Q RE ++ +K G DIL+A
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321
Score = 56 (24.8 bits), Expect = 4.3e-24, Sum P(3) = 4.3e-24
Identities = 30/137 (21%), Positives = 61/137 (44%)
Query: 196 QTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 255
Q V+F+ATMPP + E + P+ D N+ +A K + + V+ A+
Sbjct: 202 QRVLFSATMPPM-VKEIVERFLRNPECVDVAGSNQTVA----KVEQQYWVVKGVEKDEAM 256
Query: 256 ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQ 315
RL + + V++ + + TER+ ++ + K L + + +++ + + Q
Sbjct: 257 ARLLETEETDASIVFVRT-RQDTERLAD--WLCARGFKAAALHGDIPQSLRERTVDHIKQ 313
Query: 316 KK-----GADVLAKGLE 327
DV+A+GL+
Sbjct: 314 GVIDILVATDVVARGLD 330
Score = 42 (19.8 bits), Expect = 3.6e-35, Sum P(3) = 3.6e-35
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
TGRAG++G A+ + + ++++ SS
Sbjct: 356 TGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 576 (207.8 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 157/426 (36%), Positives = 224/426 (52%)
Query: 1388 DYSITIKGGKVPDPVRNWK---EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
D + I K P V+ K EA+L + + + GY + TPIQ+ +P+ Q DI+
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFLLP++ + + + P II+ PTREL QI E KF
Sbjct: 594 ACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA 653
Query: 1505 --TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562
T + IR V GGL+ ++ G I++ T GR+ E + L++C + VLDE
Sbjct: 654 YQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDE 711
Query: 1563 ADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621
ADRMID MGF D+ I+ Y + P KK+ RQT+MF+AT P
Sbjct: 712 ADRMIDAMGFGTDIDTIVNYESM----P-----------------KKENRQTLMFSATFP 750
Query: 1622 PAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVL---------- 1670
+V+ AR++L+ + I +G + + Q +K+ KL+E+L
Sbjct: 751 DSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTE 810
Query: 1671 -NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
N V K I+FV+Q+ AD LA L A T+HG + Q +R AL + GSK +
Sbjct: 811 KNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 870
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+AT VA RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + +D +L
Sbjct: 871 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLS 929
Query: 1789 DLKQMM 1794
+L +++
Sbjct: 930 ELVRVL 935
Score = 576 (207.8 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 157/426 (36%), Positives = 224/426 (52%)
Query: 713 DYSITIKGGKVPDPVRNWK---EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
D + I K P V+ K EA+L + + + GY + TPIQ+ +P+ Q DI+
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFLLP++ + + + P II+ PTREL QI E KF
Sbjct: 594 ACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA 653
Query: 830 --TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887
T + IR V GGL+ ++ G I++ T GR+ E + L++C + VLDE
Sbjct: 654 YQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDE 711
Query: 888 ADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946
ADRMID MGF D+ I+ Y + P KK+ RQT+MF+AT P
Sbjct: 712 ADRMIDAMGFGTDIDTIVNYESM----P-----------------KKENRQTLMFSATFP 750
Query: 947 PAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVL---------- 995
+V+ AR++L+ + I +G + + Q +K+ KL+E+L
Sbjct: 751 DSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTE 810
Query: 996 -NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
N V K I+FV+Q+ AD LA L A T+HG + Q +R AL + GSK +
Sbjct: 811 KNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 870
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
L+AT VA RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + +D +L
Sbjct: 871 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLS 929
Query: 1114 DLKQMM 1119
+L +++
Sbjct: 930 ELVRVL 935
Score = 277 (102.6 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 68/167 (40%), Positives = 93/167 (55%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY + TPIQ+ +P+ Q DI+ A+TGSGKT AFLLP++ + + + P
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYP 630
Query: 66 YAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
II+ PTREL QI E KF T + IR V GGL+ ++ G I++ T G
Sbjct: 631 RCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVG 688
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY--MP 167
R+ E + L++C + VLDEADRMID MGF D+ I+ Y MP
Sbjct: 689 RIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMP 735
Score = 178 (67.7 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 50/146 (34%), Positives = 76/146 (52%)
Query: 232 LANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYIL 288
+ NY S KK+ RQT+MF+AT P +V+ AR++L+ + I +G + + Q
Sbjct: 728 IVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKC 787
Query: 289 SEQDKRKKLMEVL-----------NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTL 336
+K+ KL+E+L N V K I+FV+Q+ AD LA L A T+
Sbjct: 788 DRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITI 847
Query: 337 HGGKGQEQRELALNSLKGGSKDILMA 362
HG + Q +R AL + GSK +L+A
Sbjct: 848 HGAREQRERSEALRQFRNGSKPVLIA 873
Score = 61 (26.5 bits), Expect = 9.1e-20, Sum P(4) = 9.1e-20
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 185 LANYNS--KKKYRQTVMFTATMP 205
+ NY S KK+ RQT+MF+AT P
Sbjct: 728 IVNYESMPKKENRQTLMFSATFP 750
Score = 48 (22.0 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGR G G A SF + +D +L +L +++
Sbjct: 908 TGRVGNAGRATSFIS-EDCNLLSELVRVL 935
Score = 39 (18.8 bits), Expect = 9.1e-20, Sum P(4) = 9.1e-20
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVN-QKKGADVLAKGLE 327
EQ +R + + G KPV+I ++G D+ KG++
Sbjct: 852 EQRERSEALRQFRNG-SKPVLIATAVAERGLDI--KGVD 887
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 576 (207.8 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 157/426 (36%), Positives = 224/426 (52%)
Query: 1388 DYSITIKGGKVPDPVRNWK---EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
D + I K P V+ K EA+L + + + GY + TPIQ+ +P+ Q DI+
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFLLP++ + + + P II+ PTREL QI E KF
Sbjct: 594 ACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA 653
Query: 1505 --TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 1562
T + IR V GGL+ ++ G I++ T GR+ E + L++C + VLDE
Sbjct: 654 YQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDE 711
Query: 1563 ADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621
ADRMID MGF D+ I+ Y + P KK+ RQT+MF+AT P
Sbjct: 712 ADRMIDAMGFGTDIDTIVNYESM----P-----------------KKENRQTLMFSATFP 750
Query: 1622 PAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVL---------- 1670
+V+ AR++L+ + I +G + + Q +K+ KL+E+L
Sbjct: 751 DSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTE 810
Query: 1671 -NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
N V K I+FV+Q+ AD LA L A T+HG + Q +R AL + GSK +
Sbjct: 811 KNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 870
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1788
L+AT VA RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + +D +L
Sbjct: 871 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLS 929
Query: 1789 DLKQMM 1794
+L +++
Sbjct: 930 ELVRVL 935
Score = 576 (207.8 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 157/426 (36%), Positives = 224/426 (52%)
Query: 713 DYSITIKGGKVPDPVRNWK---EASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
D + I K P V+ K EA+L + + + GY + TPIQ+ +P+ Q DI+
Sbjct: 534 DAEVKITSDKKPVGVKTCKTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIM 593
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFLLP++ + + + P II+ PTREL QI E KF
Sbjct: 594 ACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFA 653
Query: 830 --TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDE 887
T + IR V GGL+ ++ G I++ T GR+ E + L++C + VLDE
Sbjct: 654 YQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDE 711
Query: 888 ADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946
ADRMID MGF D+ I+ Y + P KK+ RQT+MF+AT P
Sbjct: 712 ADRMIDAMGFGTDIDTIVNYESM----P-----------------KKENRQTLMFSATFP 750
Query: 947 PAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYILSEQDKRKKLMEVL---------- 995
+V+ AR++L+ + I +G + + Q +K+ KL+E+L
Sbjct: 751 DSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTE 810
Query: 996 -NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
N V K I+FV+Q+ AD LA L A T+HG + Q +R AL + GSK +
Sbjct: 811 KNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPV 870
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFY 1113
L+AT VA RG+DIK V VINYDM +I+DY HRIGRTGR G G A SF + +D +L
Sbjct: 871 LIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLS 929
Query: 1114 DLKQMM 1119
+L +++
Sbjct: 930 ELVRVL 935
Score = 277 (102.6 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 68/167 (40%), Positives = 93/167 (55%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY + TPIQ+ +P+ Q DI+ A+TGSGKT AFLLP++ + + + P
Sbjct: 571 GYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYP 630
Query: 66 YAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
II+ PTREL QI E KF T + IR V GGL+ ++ G I++ T G
Sbjct: 631 RCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVY--GGLAVGYNKGQIEKGATIIVGTVG 688
Query: 124 RLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY--MP 167
R+ E + L++C + VLDEADRMID MGF D+ I+ Y MP
Sbjct: 689 RIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMP 735
Score = 178 (67.7 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 50/146 (34%), Positives = 76/146 (52%)
Query: 232 LANYNS--KKKYRQTVMFTATMPPAVERLARSYLRRPATVY-IGSVGKPTERIEQIVYIL 288
+ NY S KK+ RQT+MF+AT P +V+ AR++L+ + I +G + + Q
Sbjct: 728 IVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKC 787
Query: 289 SEQDKRKKLMEVL-----------NRGV-KKPVIIFVNQKKGADVLAKGLEKLGYNACTL 336
+K+ KL+E+L N V K I+FV+Q+ AD LA L A T+
Sbjct: 788 DRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITI 847
Query: 337 HGGKGQEQRELALNSLKGGSKDILMA 362
HG + Q +R AL + GSK +L+A
Sbjct: 848 HGAREQRERSEALRQFRNGSKPVLIA 873
Score = 61 (26.5 bits), Expect = 9.1e-20, Sum P(4) = 9.1e-20
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 185 LANYNS--KKKYRQTVMFTATMP 205
+ NY S KK+ RQT+MF+AT P
Sbjct: 728 IVNYESMPKKENRQTLMFSATFP 750
Score = 48 (22.0 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1153
TGR G G A SF + +D +L +L +++
Sbjct: 908 TGRVGNAGRATSFIS-EDCNLLSELVRVL 935
Score = 39 (18.8 bits), Expect = 9.1e-20, Sum P(4) = 9.1e-20
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVN-QKKGADVLAKGLE 327
EQ +R + + G KPV+I ++G D+ KG++
Sbjct: 852 EQRERSEALRQFRNG-SKPVLIATAVAERGLDI--KGVD 887
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 530 (191.6 bits), Expect = 1.3e-49, P = 1.3e-49
Identities = 152/448 (33%), Positives = 233/448 (52%)
Query: 1381 DWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
D+++ RE ++ +G +P +++A L +L+ ++ GY PTPIQ IP +
Sbjct: 101 DFKVIRE-IAVVQEGPVRVEPALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKG 159
Query: 1441 RDIIGVAETGSGKTLAFLLPLLVWIQ------SLPKIARME-DAD-QGPY-----AIIMA 1487
D+IG+A+TGSGKT AFL+P++ + + P+ +E + D GP +I+
Sbjct: 160 HDVIGIAQTGSGKTAAFLIPVINKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVC 219
Query: 1488 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 1547
PTRELA Q E K +R +V GG + +Q ++ LGC+I+ ATPGRL+ ++
Sbjct: 220 PTRELAIQAFNEARKLCYRSMLRPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDK 279
Query: 1548 RYLV-LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS 1606
L+ L + Y+V+DEAD M+ +E D++KI+ A E K L
Sbjct: 280 PELLNLQRVRYVVIDEADEMLTADWEEDMKKIMS----------AGGAAQEIKYL----- 324
Query: 1607 KKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+F+AT P + LAR +L + +G G I Q V + +K++
Sbjct: 325 --------LFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQTVIETAPMNKKRA 376
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGG 1724
L +++N + IIFVN K AD L L CT +H + Q +RE AL + + G
Sbjct: 377 LNDLINSMPPQRTIIFVNNKWTADELDDYLYNECKLPCTSMHADRTQREREDALRAFRAG 436
Query: 1725 SKDILVATDVAGRGIDIKDVSMVINYDMAK----SIEDYTHRIGRTGRAGKEGLAVSFCT 1780
+ ILV T V RGID+++V+ V+NYD+ IE+YTHRIGRTGR G +GLA SF T
Sbjct: 437 TAPILVTTGVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIGRTGRIGNKGLATSFYT 496
Query: 1781 KDDSHLFYDLKQMMISSPVSTCPPELLN 1808
D + L + M+ + PE L+
Sbjct: 497 DRDEAIASVLVRTMLETNQEI--PEFLS 522
Score = 529 (191.3 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
Identities = 149/437 (34%), Positives = 229/437 (52%)
Query: 706 DWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 765
D+++ RE ++ +G +P +++A L +L+ ++ GY PTPIQ IP +
Sbjct: 101 DFKVIRE-IAVVQEGPVRVEPALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKG 159
Query: 766 RDIIGVAETGSGKTLAFLLPLLVWIQ------SLPKIARME-DAD-QGPY-----AIIMA 812
D+IG+A+TGSGKT AFL+P++ + + P+ +E + D GP +I+
Sbjct: 160 HDVIGIAQTGSGKTAAFLIPVINKLMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVC 219
Query: 813 PTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872
PTRELA Q E K +R +V GG + +Q ++ LGC+I+ ATPGRL+ ++
Sbjct: 220 PTRELAIQAFNEARKLCYRSMLRPGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDK 279
Query: 873 RYLV-LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNS 931
L+ L + Y+V+DEAD M+ +E D++KI+ A E K L
Sbjct: 280 PELLNLQRVRYVVIDEADEMLTADWEEDMKKIMS----------AGGAAQEIKYL----- 324
Query: 932 KKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+F+AT P + LAR +L + +G G I Q V + +K++
Sbjct: 325 --------LFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQTVIETAPMNKKRA 376
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGGKGQEQRELALNSLKGG 1049
L +++N + IIFVN K AD L L CT +H + Q +RE AL + + G
Sbjct: 377 LNDLINSMPPQRTIIFVNNKWTADELDDYLYNECKLPCTSMHADRTQREREDALRAFRAG 436
Query: 1050 SKDILVATDVAGRGIDIKDVSMVINYDMAK----SIEDYTHRIGRTGRAGKEGLAVSFCT 1105
+ ILV T V RGID+++V+ V+NYD+ IE+YTHRIGRTGR G +GLA SF T
Sbjct: 437 TAPILVTTGVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIGRTGRIGNKGLATSFYT 496
Query: 1106 KDDSHLFYDLKQMMISS 1122
D + L + M+ +
Sbjct: 497 DRDEAIASVLVRTMLET 513
Score = 260 (96.6 bits), Expect = 7.6e-29, Sum P(3) = 7.6e-29
Identities = 66/176 (37%), Positives = 102/176 (57%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQ------SLPKI 55
++ GY PTPIQ IP + D+IG+A+TGSGKT AFL+P++ + + P+
Sbjct: 137 VDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVINKLMGKAKKLAAPRP 196
Query: 56 ARME-DAD-QGPY-----AIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 108
+E + D GP +I+ PTRELA Q E K +R +V GG + +Q
Sbjct: 197 NPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSMLRPGVVYGGGNFMDQI 256
Query: 109 FRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMIDMGFEPDVQKIL 163
++ LGC+I+ ATPGRL+ ++ L+ L + Y+V+DEAD M+ +E D++KI+
Sbjct: 257 RQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLTADWEEDMKKIM 312
Score = 142 (55.0 bits), Expect = 7.6e-29, Sum P(3) = 7.6e-29
Identities = 41/142 (28%), Positives = 69/142 (48%)
Query: 222 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP-ATVYIGSVGKPTER 280
T D E++ K + + + + ++F+AT P + LAR +L + +G G
Sbjct: 301 TADWEEDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSN 360
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT-LHGG 339
I Q V + +K++ L +++N + IIFVN K AD L L CT +H
Sbjct: 361 IIQTVIETAPMNKKRALNDLINSMPPQRTIIFVNNKWTADELDDYLYNECKLPCTSMHAD 420
Query: 340 KGQEQRELALNSLKGGSKDILM 361
+ Q +RE AL + + G+ IL+
Sbjct: 421 RTQREREDALRAFRAGTAPILV 442
Score = 56 (24.8 bits), Expect = 3.2e-52, Sum P(2) = 3.2e-52
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1167
TGR G +GLA SF T D + L + M+ + PE L+
Sbjct: 482 TGRIGNKGLATSFYTDRDEAIASVLVRTMLETNQEI--PEFLS 522
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 320 (117.7 bits), Expect = 3.9e-52, Sum P(2) = 3.9e-52
Identities = 71/190 (37%), Positives = 107/190 (56%)
Query: 1604 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR 1663
+ + + RQTV+F+AT+P ++ +A +L+ P V I S + IEQ ++ K
Sbjct: 174 FKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKT 233
Query: 1664 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723
++ +L +I+FV K+ LA LE GY A L+G Q QRE ++SLK
Sbjct: 234 SAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKD 293
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G DI+VATDVA RG+D+ ++ V N DM E Y HRIGRTGRAG+EG A+ T +
Sbjct: 294 GRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRE 353
Query: 1784 SHLFYDLKQM 1793
+ ++++
Sbjct: 354 RRMLQVIERV 363
Score = 320 (117.7 bits), Expect = 5.5e-52, Sum P(3) = 5.5e-52
Identities = 71/190 (37%), Positives = 107/190 (56%)
Query: 929 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR 988
+ + + RQTV+F+AT+P ++ +A +L+ P V I S + IEQ ++ K
Sbjct: 174 FKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKT 233
Query: 989 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048
++ +L +I+FV K+ LA LE GY A L+G Q QRE ++SLK
Sbjct: 234 SAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKD 293
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
G DI+VATDVA RG+D+ ++ V N DM E Y HRIGRTGRAG+EG A+ T +
Sbjct: 294 GRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRE 353
Query: 1109 SHLFYDLKQM 1118
+ ++++
Sbjct: 354 RRMLQVIERV 363
Score = 306 (112.8 bits), Expect = 3.9e-52, Sum P(2) = 3.9e-52
Identities = 73/177 (41%), Positives = 102/177 (57%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L I+ + GY EP+ IQ+Q+IPI L D+IG A+TG+GKT AF LP+L
Sbjct: 13 LHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL------- 65
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
R++ + + P A+I+APTRELA Q+ + + G+ V V GG Q +R
Sbjct: 66 --HRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
G +IV+ATPGRL D L VL ++VLDEAD M+ +GF D++ I + MP T
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 306 (112.8 bits), Expect = 3.9e-52, Sum P(2) = 3.9e-52
Identities = 73/177 (41%), Positives = 102/177 (57%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L I+ + GY EP+ IQ+Q+IPI L D+IG A+TG+GKT AF LP+L
Sbjct: 13 LHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL------- 65
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
R++ + + P A+I+APTRELA Q+ + + G+ V V GG Q +R
Sbjct: 66 --HRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
G +IV+ATPGRL D L VL ++VLDEAD M+ +GF D++ I + MP T
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 303 (111.7 bits), Expect = 5.5e-52, Sum P(3) = 5.5e-52
Identities = 71/165 (43%), Positives = 98/165 (59%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
GY EP+ IQ+Q+IPI L D+IG A+TG+GKT AF LP+L R++ + + P
Sbjct: 25 GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL---------HRIDPSKREP 75
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
A+I+APTRELA Q+ + + G+ V V GG Q +R G +IV+ATPGR
Sbjct: 76 QALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGR 135
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 169
L D L VL ++VLDEAD M+ +GF D++ I + MP T
Sbjct: 136 LCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Score = 178 (67.7 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 43/128 (33%), Positives = 68/128 (53%)
Query: 235 YNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKR 294
+ + + RQTV+F+AT+P ++ +A +L+ P V I S + IEQ ++ K
Sbjct: 174 FKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKT 233
Query: 295 KKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 354
++ +L +I+FV K+ LA LE GY A L+G Q QRE ++SLK
Sbjct: 234 SAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKD 293
Query: 355 GSKDILMA 362
G DI++A
Sbjct: 294 GRLDIVVA 301
Score = 47 (21.6 bits), Expect = 5.5e-52, Sum P(3) = 5.5e-52
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 188 YNSKKKYRQTVMFTATMP 205
+ + + RQTV+F+AT+P
Sbjct: 174 FKAMPETRQTVLFSATLP 191
Score = 45 (20.9 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQM 1152
TGRAG+EG A+ T + + ++++
Sbjct: 336 TGRAGREGRALLLVTPRERRMLQVIERV 363
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 452 (164.2 bits), Expect = 7.5e-39, Sum P(4) = 7.5e-39
Identities = 98/223 (43%), Positives = 138/223 (61%)
Query: 698 SLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
S +E++E +R+ E I++KG P P++ W + + ++L ++K Y +PTPIQ Q
Sbjct: 331 SPEEVSE--YRLELE--GISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQ 386
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKT+AFLLP+ I + E GP A+IM PTREL
Sbjct: 387 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAE----GPLAVIMTPTREL 442
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
A QI +E KF L +R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 443 ALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRV 502
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+V+DEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 TNLRRVTYVVIDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 540
Score = 452 (164.2 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 98/223 (43%), Positives = 138/223 (61%)
Query: 1373 SLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
S +E++E +R+ E I++KG P P++ W + + ++L ++K Y +PTPIQ Q
Sbjct: 331 SPEEVSE--YRLELE--GISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQ 386
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKT+AFLLP+ I + E GP A+IM PTREL
Sbjct: 387 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAE----GPLAVIMTPTREL 442
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
A QI +E KF L +R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 443 ALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRV 502
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+V+DEADRM DMGFEP V +I++ N++PD +
Sbjct: 503 TNLRRVTYVVIDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 540
Score = 400 (145.9 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 86/178 (48%), Positives = 113/178 (63%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K Y +PTPIQ QAIP + RD+IG+A+TGSGKT+AFLLP+ I + E
Sbjct: 372 LKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAE-- 429
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP A+IM PTRELA QI +E KF L +R V V GG EQ L+ G EI++ T
Sbjct: 430 --GPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCT 487
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L R L + TY+V+DEADRM DMGFEP V +I++ N++PD +
Sbjct: 488 PGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVD-----NVRPDRQ 540
Score = 381 (139.2 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 104/295 (35%), Positives = 155/295 (52%)
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+++E + F L +V G I + L + I++ RMIDM + +
Sbjct: 446 ITKECKKFSKSLALRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LGANNGR 501
Query: 1578 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
+ VT + D D D E +++ ++ + RQTVMF+AT P +E LAR L
Sbjct: 502 VTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILS 561
Query: 1634 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1692
+P V +G +EQ V ++ E+ K KL+E+L +K VIIFV++++ AD L
Sbjct: 562 KPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLL 621
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
K L K Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 622 KDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSC 681
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD-LKQMMISSPVSTCPPEL 1806
EDY HR GRTGRAG +G A +F T+ + D LK + +S S+ P EL
Sbjct: 682 PNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSG--SSVPAEL 734
Score = 373 (136.4 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 100/285 (35%), Positives = 150/285 (52%)
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+++E + F L +V G I + L + I++ RMIDM + +
Sbjct: 446 ITKECKKFSKSLALRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LGANNGR 501
Query: 903 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
+ VT + D D D E +++ ++ + RQTVMF+AT P +E LAR L
Sbjct: 502 VTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILS 561
Query: 959 RPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK-PVIIFVNQKKGADVLA 1017
+P V +G +EQ V ++ E+ K KL+E+L +K VIIFV++++ AD L
Sbjct: 562 KPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLL 621
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
K L K Y +LHGG Q R+ +N K G+ +LVAT VA RG+D+K + +V+NY
Sbjct: 622 KDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSC 681
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD-LKQMMIS 1121
EDY HR GRTGRAG +G A +F T+ + D LK + +S
Sbjct: 682 PNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELS 726
Score = 214 (80.4 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 50/122 (40%), Positives = 71/122 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P +E LAR L +P V +G +EQ V ++ E+ K KL+E+L
Sbjct: 539 RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEIL 598
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+K VIIFV++++ AD L K L K Y +LHGG Q R+ +N K G+ +L
Sbjct: 599 GHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLL 658
Query: 361 MA 362
+A
Sbjct: 659 VA 660
Score = 60 (26.2 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYD-LKQMMISSPVSTCPPEL 1165
TGRAG +G A +F T+ + D LK + +S S+ P EL
Sbjct: 695 TGRAGNKGYAYTFITEGQARYSGDILKALELSG--SSVPAEL 734
Score = 53 (23.7 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 29/124 (23%), Positives = 53/124 (42%)
Query: 1572 EPDVQKI---LEYMPVTNLKPDTEDAEDENKLLANYNSKKK---YRQTVMFTATMPPAVE 1625
E +KI L Y PV L+ + + AE + + Y + + + QT + T A++
Sbjct: 902 EQQAEKINAKLNYTPVEKLEEERQAAEAA-ETVKRYEEELEINDFPQTARWKVTSKEALQ 960
Query: 1626 RLARSYLRRPATVYIGSV---GKPTERIEQIVYILSEQDKR---KKLMEVLNRGVKKPVI 1679
R+ Y T+ G+ GK + E+ +Y+ E +K + R +K+ +I
Sbjct: 961 RIGE-YSEAAITIR-GTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELI 1018
Query: 1680 IFVN 1683
N
Sbjct: 1019 RLQN 1022
Score = 53 (23.7 bits), Expect = 5.1e-50, Sum P(3) = 5.1e-50
Identities = 29/124 (23%), Positives = 53/124 (42%)
Query: 897 EPDVQKI---LEYMPVTNLKPDTEDAEDENKLLANYNSKKK---YRQTVMFTATMPPAVE 950
E +KI L Y PV L+ + + AE + + Y + + + QT + T A++
Sbjct: 902 EQQAEKINAKLNYTPVEKLEEERQAAEAA-ETVKRYEEELEINDFPQTARWKVTSKEALQ 960
Query: 951 RLARSYLRRPATVYIGSV---GKPTERIEQIVYILSEQDKR---KKLMEVLNRGVKKPVI 1004
R+ Y T+ G+ GK + E+ +Y+ E +K + R +K+ +I
Sbjct: 961 RIGE-YSEAAITIR-GTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELI 1018
Query: 1005 IFVN 1008
N
Sbjct: 1019 RLQN 1022
Score = 53 (23.7 bits), Expect = 9.3e-15, Sum P(4) = 9.3e-15
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 102 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 161
+++E + F L +V G I + L + I++ RMIDM + +
Sbjct: 446 ITKECKKFSKSLALRVVCVYGGTGIS---EQIAELKRGAEIIVCTPGRMIDM-LGANNGR 501
Query: 162 ILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQTVMFTATMP 205
+ VT + D D D E +++ ++ + RQTVMF+AT P
Sbjct: 502 VTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 549
Score = 51 (23.0 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 26/114 (22%), Positives = 49/114 (42%)
Query: 210 LEYMPVTNLKPDTEDAEDENKLLANYNSKKK---YRQTVMFTATMPPAVERLARSYLRRP 266
L Y PV L+ + + AE + + Y + + + QT + T A++R+ Y
Sbjct: 912 LNYTPVEKLEEERQAAEAA-ETVKRYEEELEINDFPQTARWKVTSKEALQRIGE-YSEAA 969
Query: 267 ATVYIGSV---GKPTERIEQIVYILSEQDKR---KKLMEVLNRGVKKPVIIFVN 314
T+ G+ GK + E+ +Y+ E +K + R +K+ +I N
Sbjct: 970 ITIR-GTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQN 1022
Score = 45 (20.9 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
Identities = 32/124 (25%), Positives = 48/124 (38%)
Query: 156 EPDVQKI---LEYMPVTNLKPDTEDAEDENKLLANYNSKKK---YRQTVMFTATMPPA-- 207
E +KI L Y PV L+ + + AE + + Y + + + QT + T A
Sbjct: 902 EQQAEKINAKLNYTPVEKLEEERQAAEAA-ETVKRYEEELEINDFPQTARWKVTSKEALQ 960
Query: 208 KILEYMPV------TNLKPDTEDAEDENKL-LA--NYNSKKKYRQTVMFTATMPPAVERL 258
+I EY T P E E E K+ LA + N + T + + RL
Sbjct: 961 RIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRL 1020
Query: 259 ARSY 262
SY
Sbjct: 1021 QNSY 1024
Score = 37 (18.1 bits), Expect = 7.5e-39, Sum P(4) = 7.5e-39
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 171 LKPDTEDAEDENKLLANYNSKKKYRQTV 198
++PD +D E+++K S++ + V
Sbjct: 182 VEPDGDDEEEQDKAAEAEESERMEEEEV 209
Score = 37 (18.1 bits), Expect = 7.5e-39, Sum P(4) = 7.5e-39
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 218 LKPDTEDAEDENKLLANYNSKKKYRQTV 245
++PD +D E+++K S++ + V
Sbjct: 182 VEPDGDDEEEQDKAAEAEESERMEEEEV 209
Score = 37 (18.1 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTV 939
++PD +D E+++K S++ + V
Sbjct: 182 VEPDGDDEEEQDKAAEAEESERMEEEEV 209
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 319 (117.4 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 73/174 (41%), Positives = 103/174 (59%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ++++ +EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
A A+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+
Sbjct: 76 --AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQS 133
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I+I T GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 134 GVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 319 (117.4 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 73/174 (41%), Positives = 103/174 (59%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ++++ +EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
A A+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+
Sbjct: 76 --AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQS 133
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I+I T GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 134 GVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 312 (114.9 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
Identities = 72/166 (43%), Positives = 98/166 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P A A
Sbjct: 24 LEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP--AAEGRA 81
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+ G +I+I T
Sbjct: 82 ETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGT 141
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 142 TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 260 (96.6 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 62/174 (35%), Positives = 89/174 (51%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
LVATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++SF ++
Sbjct: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE 363
Score = 260 (96.6 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 62/174 (35%), Positives = 89/174 (51%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
LVATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++SF ++
Sbjct: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE 363
Score = 108 (43.1 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 33/123 (26%), Positives = 54/123 (43%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 360 LMA 362
L+A
Sbjct: 310 LVA 312
Score = 44 (20.5 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 1125 TGRAGKEGLAVSFCTKD 1141
TGRAG G ++SF ++
Sbjct: 347 TGRAGASGHSISFACEE 363
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 319 (117.4 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 73/174 (41%), Positives = 103/174 (59%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L ++++ +EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
A A+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+
Sbjct: 76 --AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQS 133
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
G +I+I T GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 134 GVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 319 (117.4 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 73/174 (41%), Positives = 103/174 (59%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L ++++ +EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P
Sbjct: 16 LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
A A+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+
Sbjct: 76 --AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQS 133
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
G +I+I T GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 134 GVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 312 (114.9 bits), Expect = 4.9e-49, Sum P(3) = 4.9e-49
Identities = 72/166 (43%), Positives = 98/166 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+EK G+ TPIQ A+P+ L +DI G A+TG+GKTLAFL + + P A A
Sbjct: 24 LEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP--AAEGRA 81
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P AIIMAPTRELA QI + G++ L GG S ++Q +L+ G +I+I T
Sbjct: 82 ETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGT 141
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GR+ID + R LN +VLDEADRM D+GF D++ + MP
Sbjct: 142 TGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 260 (96.6 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 62/174 (35%), Positives = 89/174 (51%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
LVATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++SF ++
Sbjct: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE 363
Score = 260 (96.6 bits), Expect = 5.9e-50, Sum P(2) = 5.9e-50
Identities = 62/174 (35%), Positives = 89/174 (51%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
LVATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++SF ++
Sbjct: 310 LVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEE 363
Score = 108 (43.1 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 33/123 (26%), Positives = 54/123 (43%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K R ++F+AT+ V+ LA ++ P V + K RI++ ++ S + K L
Sbjct: 190 KDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQT 249
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
++ IIF N K + + L + L G Q++RE L G DI
Sbjct: 250 LIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDI 309
Query: 360 LMA 362
L+A
Sbjct: 310 LVA 312
Score = 44 (20.5 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 1125 TGRAGKEGLAVSFCTKD 1141
TGRAG G ++SF ++
Sbjct: 347 TGRAGASGHSISFACEE 363
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 322 (118.4 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 73/184 (39%), Positives = 108/184 (58%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
+ + + +L +++E +EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL
Sbjct: 9 QKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTF 68
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
++ S P IA + +Q P A+IMAPTRELA QI + G++ L GG ++
Sbjct: 69 HYLLSHPAIADRK-VNQ-PRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDK 126
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
Q L G +I+I T GRLID + ++ L +VLDEADRM D+GF D++ + M
Sbjct: 127 QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRM 186
Query: 908 PVTN 911
P N
Sbjct: 187 PPAN 190
Score = 322 (118.4 bits), Expect = 7.2e-50, Sum P(2) = 7.2e-50
Identities = 73/184 (39%), Positives = 108/184 (58%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
+ + + +L +++E +EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL
Sbjct: 9 QKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTF 68
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
++ S P IA + +Q P A+IMAPTRELA QI + G++ L GG ++
Sbjct: 69 HYLLSHPAIADRK-VNQ-PRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDK 126
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
Q L G +I+I T GRLID + ++ L +VLDEADRM D+GF D++ + M
Sbjct: 127 QLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRM 186
Query: 1583 PVTN 1586
P N
Sbjct: 187 PPAN 190
Score = 309 (113.8 bits), Expect = 6.7e-49, Sum P(3) = 6.7e-49
Identities = 71/169 (42%), Positives = 99/169 (58%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+EK G+ TPIQ A+P+ L RD+ G A+TG+GKT+AFL ++ S P IA +
Sbjct: 24 LEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRK-V 82
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+Q P A+IMAPTRELA QI + G++ L GG ++Q L G +I+I T
Sbjct: 83 NQ-PRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGT 141
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTN 170
GRLID + ++ L +VLDEADRM D+GF D++ + MP N
Sbjct: 142 TGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190
Score = 243 (90.6 bits), Expect = 7.2e-50, Sum P(2) = 7.2e-50
Identities = 65/202 (32%), Positives = 97/202 (48%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R ++F+AT+ V LA + + + K RI++ ++ S ++K + L ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
IIF N K + + L G+ L G Q++R L+ G DILV
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++S ++ Y L
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE-----YAL 366
Query: 1791 KQMMISSPVSTCPPELLNHPDA 1812
I + + P +PDA
Sbjct: 367 NLPAIETYIGHSIPVSKYNPDA 388
Score = 240 (89.5 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 58/172 (33%), Positives = 87/172 (50%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R ++F+AT+ V LA + + + K RI++ ++ S ++K + L ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
IIF N K + + L G+ L G Q++R L+ G DILV
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
ATDVA RG+ I V+ V NYD+ EDY HRIGRTGRAG G ++S ++
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE 363
Score = 96 (38.9 bits), Expect = 6.6e-34, Sum P(3) = 6.6e-34
Identities = 30/121 (24%), Positives = 53/121 (43%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R ++F+AT+ V LA + + + K RI++ ++ S ++K + L ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
IIF N K + + L G+ L G Q++R L+ G DIL+
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311
Query: 362 A 362
A
Sbjct: 312 A 312
Score = 41 (19.5 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHPDA 1171
TGRAG G ++S ++ Y L I + + P +PDA
Sbjct: 347 TGRAGASGHSISLACEE-----YALNLPAIETYIGHSIPVSKYNPDA 388
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 350 (128.3 bits), Expect = 5.9e-51, Sum P(3) = 5.9e-51
Identities = 75/197 (38%), Positives = 113/197 (57%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQ +F+ATMP ++R+A +L+ + I + + IEQ +S+ +K + L+ VL
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL 239
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ +IIFV + LA+ LE GY + LHG Q+ RE A+ LK G DIL+
Sbjct: 240 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
ATDVA RG+D++ + V+NYD+ E Y HRIGRTGRAG+ G+A+ F T + + +
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359
Query: 1791 KQMMIS--SPVSTCPPE 1805
++ S SP+ PE
Sbjct: 360 ERATNSRISPMKVPSPE 376
Score = 342 (125.4 bits), Expect = 5.1e-50, Sum P(3) = 5.1e-50
Identities = 70/182 (38%), Positives = 107/182 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQ +F+ATMP ++R+A +L+ + I + + IEQ +S+ +K + L+ VL
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL 239
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ +IIFV + LA+ LE GY + LHG Q+ RE A+ LK G DIL+
Sbjct: 240 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
ATDVA RG+D++ + V+NYD+ E Y HRIGRTGRAG+ G+A+ F T + + +
Sbjct: 300 ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI 359
Query: 1116 KQ 1117
++
Sbjct: 360 ER 361
Score = 296 (109.3 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 75/226 (33%), Positives = 124/226 (54%)
Query: 728 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 787
R ++E L +L ++++GY +PTPIQ +I + +DI+G A+TG+GKT AF LPLL
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSRE 846
+ S P +++APTRELA Q+ E + + + VL + GG S +
Sbjct: 66 NKVTS----------QTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
+Q L+ G ++++ TPGR++D + L L +VLDEAD M+ MGF D++ ILE+
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEH 175
Query: 907 MPVTN-LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951
P L + ++ K +AN + K ++ + T ++E+
Sbjct: 176 TPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQ 221
Score = 296 (109.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 75/226 (33%), Positives = 124/226 (54%)
Query: 1403 RNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL 1462
R ++E L +L ++++GY +PTPIQ +I + +DI+G A+TG+GKT AF LPLL
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSRE 1521
+ S P +++APTRELA Q+ E + + + VL + GG S +
Sbjct: 66 NKVTS----------QTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
+Q L+ G ++++ TPGR++D + L L +VLDEAD M+ MGF D++ ILE+
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEH 175
Query: 1582 MPVTN-LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626
P L + ++ K +AN + K ++ + T ++E+
Sbjct: 176 TPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQ 221
Score = 273 (101.2 bits), Expect = 5.9e-51, Sum P(3) = 5.9e-51
Identities = 64/167 (38%), Positives = 99/167 (59%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++++GY +PTPIQ +I + +DI+G A+TG+GKT AF LPLL + S
Sbjct: 21 LDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTS---------- 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVL-VVGGLSREEQGFRLRLGCEIVIA 120
P +++APTRELA Q+ E + + + VL + GG S ++Q L+ G ++++
Sbjct: 71 QTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVG 130
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
TPGR++D + L L +VLDEAD M+ MGF D++ ILE+ P
Sbjct: 131 TPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTP 177
Score = 186 (70.5 bits), Expect = 6.7e-35, Sum P(4) = 6.7e-35
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQ +F+ATMP ++R+A +L+ + I + + IEQ +S+ +K + L+ VL
Sbjct: 180 RQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL 239
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ +IIFV + LA+ LE GY + LHG Q+ RE A+ LK G DIL+
Sbjct: 240 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILI 299
Query: 362 A 362
A
Sbjct: 300 A 300
Score = 61 (26.5 bits), Expect = 6.7e-35, Sum P(4) = 6.7e-35
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1113 YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS--SPVSTCPPE 1164
YD + + TGRAG+ G+A+ F T + + +++ S SP+ PE
Sbjct: 323 YDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMKVPSPE 376
Score = 39 (18.8 bits), Expect = 5.9e-51, Sum P(3) = 5.9e-51
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 195 RQTVMFTATMP 205
RQ +F+ATMP
Sbjct: 180 RQLALFSATMP 190
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 324 (119.1 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 66/172 (38%), Positives = 108/172 (62%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
+I++ K+G+ +P IQR++IP L+ RDIIG+A+TGSGKT AF++P+L
Sbjct: 129 QIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL---------Q 179
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 857
++ +A QG + + +APTRELA QI ++ N G+ +G++T ++VGG+ Q L
Sbjct: 180 KLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPH 239
Query: 858 IVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
+V+ +PGR++ LE+ + L Y ++DEADR+ FE +V IL+ +P
Sbjct: 240 VVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP 291
Score = 324 (119.1 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 66/172 (38%), Positives = 108/172 (62%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
+I++ K+G+ +P IQR++IP L+ RDIIG+A+TGSGKT AF++P+L
Sbjct: 129 QIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL---------Q 179
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCE 1532
++ +A QG + + +APTRELA QI ++ N G+ +G++T ++VGG+ Q L
Sbjct: 180 KLLEAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPH 239
Query: 1533 IVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
+V+ +PGR++ LE+ + L Y ++DEADR+ FE +V IL+ +P
Sbjct: 240 VVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP 291
Score = 316 (116.3 bits), Expect = 4.5e-50, Sum P(2) = 4.5e-50
Identities = 65/165 (39%), Positives = 104/165 (63%)
Query: 4 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 63
K+G+ +P IQR++IP L+ RDIIG+A+TGSGKT AF++P+L ++ +A Q
Sbjct: 136 KLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVL---------QKLLEAPQ 186
Query: 64 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
G + + +APTRELA QI ++ N G+ +G++T ++VGG+ Q L +V+ +PG
Sbjct: 187 GLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPG 246
Query: 124 RLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
R++ LE+ + L Y ++DEADR+ FE +V IL+ +P
Sbjct: 247 RVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIP 291
Score = 290 (107.1 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 70/194 (36%), Positives = 105/194 (54%)
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
K R T +F+ATM V +L R+ L P V + S + + + Q + + K L
Sbjct: 292 KERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAY 351
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+LN IIF + + +A L LG+ A ++G Q +R +LN K G+K I
Sbjct: 352 ILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSI 411
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF- 1112
LVATDVA RG+DI V +VINYD+ + ++Y HR+GRT RAG G A++ T+ D ++
Sbjct: 412 LVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQ 471
Query: 1113 ---YDLKQMMISSP 1123
+ LK+ + S P
Sbjct: 472 RIEFVLKKKLDSFP 485
Score = 290 (107.1 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 70/194 (36%), Positives = 105/194 (54%)
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
K R T +F+ATM V +L R+ L P V + S + + + Q + + K L
Sbjct: 292 KERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAY 351
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+LN IIF + + +A L LG+ A ++G Q +R +LN K G+K I
Sbjct: 352 ILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSI 411
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLF- 1787
LVATDVA RG+DI V +VINYD+ + ++Y HR+GRT RAG G A++ T+ D ++
Sbjct: 412 LVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQ 471
Query: 1788 ---YDLKQMMISSP 1798
+ LK+ + S P
Sbjct: 472 RIEFVLKKKLDSFP 485
Score = 133 (51.9 bits), Expect = 1.0e-33, Sum P(3) = 1.0e-33
Identities = 38/123 (30%), Positives = 59/123 (47%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 299
K R T +F+ATM V +L R+ L P V + S + + + Q + + K L
Sbjct: 292 KERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAY 351
Query: 300 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 359
+LN IIF + + +A L LG+ A ++G Q +R +LN K G+K I
Sbjct: 352 ILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSI 411
Query: 360 LMA 362
L+A
Sbjct: 412 LVA 414
Score = 45 (20.9 bits), Expect = 1.0e-33, Sum P(3) = 1.0e-33
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLF----YDLKQMMISSP 1157
T RAG G A++ T+ D ++ + LK+ + S P
Sbjct: 449 TARAGNSGRAITIVTQYDVEMYQRIEFVLKKKLDSFP 485
Score = 41 (19.5 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 253 PAVERLARSYLRRPATVYIGSVGKP---TERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 309
P ++ + +++ T I + K TE+ +QIV + ++ + K++ E VK+ +
Sbjct: 10 PTLKSNGSAVVKKTTTTSIAAAPKKSTLTEKPKQIVKKVIKKQEEKEVKEEEEEEVKEEI 69
Score = 41 (19.5 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 947 PAVERLARSYLRRPATVYIGSVGKP---TERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003
P ++ + +++ T I + K TE+ +QIV + ++ + K++ E VK+ +
Sbjct: 10 PTLKSNGSAVVKKTTTTSIAAAPKKSTLTEKPKQIVKKVIKKQEEKEVKEEEEEEVKEEI 69
Score = 38 (18.4 bits), Expect = 2.7e-50, Sum P(3) = 2.7e-50
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1247 EEKELNKDKEREGEAIKE 1264
EEKE+ KE E E +KE
Sbjct: 53 EEKEV---KEEEEEEVKE 67
Score = 37 (18.1 bits), Expect = 9.0e-24, Sum P(3) = 9.0e-24
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 193 KYRQTVMFTATMPPAKILEYMPVTNLKP 220
K R T +F+ATM +K+ + + + P
Sbjct: 292 KERNTYLFSATMT-SKVAKLQRASLVNP 318
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 307 (113.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 67/172 (38%), Positives = 102/172 (59%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL +L+ ++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S
Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+++ + P +I+ PTRELA Q+ + + + V+GG + +Q L
Sbjct: 67 RALSKRD-----PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
++ATPGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Score = 307 (113.1 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 67/172 (38%), Positives = 102/172 (59%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL +L+ ++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S
Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+++ + P +I+ PTRELA Q+ + + + V+GG + +Q L
Sbjct: 67 RALSKRD-----PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
++ATPGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Score = 304 (112.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 85/262 (32%), Positives = 135/262 (51%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S +++ +
Sbjct: 16 LKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRD-- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+ PTRELA Q+ + + + V+GG + +Q L ++AT
Sbjct: 74 ---PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTED 177
PGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E T + T D
Sbjct: 131 PGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLD 190
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
+ N++ A K + TA E+ ++ + + + LL+ S
Sbjct: 191 HSEINEIAAAL--LKNPLHVAIGTAHA------EHQDISQRIYLCDHLDHKEALLSRLLS 242
Query: 238 KKKYRQTVMFTATMPPAVERLA 259
+ ++Q ++FTAT ERLA
Sbjct: 243 DESHKQVIIFTATRADT-ERLA 263
Score = 293 (108.2 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 69/183 (37%), Positives = 101/183 (55%)
Query: 928 NYNSKKKYRQTVMFTATMPPA-VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 986
N + K RQT+MF+AT+ + + +A + L+ P V IG+ + I Q +Y+ D
Sbjct: 172 NEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231
Query: 987 KRKKLME-VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045
++ L+ +L+ K VIIF + + LA L G+ L G Q R ++
Sbjct: 232 HKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQ 291
Query: 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
G + ILV TDVA RG+D+ +VS+VIN+DM K E+Y HRIGRTGRAG +G A+S
Sbjct: 292 FARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 1106 KDD 1108
D
Sbjct: 352 PKD 354
Score = 293 (108.2 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 69/183 (37%), Positives = 101/183 (55%)
Query: 1603 NYNSKKKYRQTVMFTATMPPA-VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N + K RQT+MF+AT+ + + +A + L+ P V IG+ + I Q +Y+ D
Sbjct: 172 NEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231
Query: 1662 KRKKLME-VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720
++ L+ +L+ K VIIF + + LA L G+ L G Q R ++
Sbjct: 232 HKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQ 291
Query: 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
G + ILV TDVA RG+D+ +VS+VIN+DM K E+Y HRIGRTGRAG +G A+S
Sbjct: 292 FARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 1781 KDD 1783
D
Sbjct: 352 PKD 354
Score = 49 (22.3 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 953
+ + LL+ S + ++Q ++FTAT ERLA
Sbjct: 231 DHKEALLSRLLSDESHKQVIIFTATRADT-ERLA 263
Score = 49 (22.3 bits), Expect = 6.0e-25, Sum P(2) = 6.0e-25
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628
+ + LL+ S + ++Q ++FTAT ERLA
Sbjct: 231 DHKEALLSRLLSDESHKQVIIFTATRADT-ERLA 263
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG +G A+S D
Sbjct: 337 TGRAGAKGDAISLVGPKD 354
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 307 (113.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 67/172 (38%), Positives = 102/172 (59%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
SL +L+ ++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S
Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+++ + P +I+ PTRELA Q+ + + + V+GG + +Q L
Sbjct: 67 RALSKRD-----PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
++ATPGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Score = 307 (113.1 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 67/172 (38%), Positives = 102/172 (59%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
SL +L+ ++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S
Sbjct: 7 SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+++ + P +I+ PTRELA Q+ + + + V+GG + +Q L
Sbjct: 67 RALSKRD-----PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALA 121
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
++ATPGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E
Sbjct: 122 KEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINE 173
Score = 304 (112.1 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 85/262 (32%), Positives = 135/262 (51%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++ +G A PT IQ QA+PI L +D++ ++TGSGKTLAFLLP L + S +++ +
Sbjct: 16 LKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRD-- 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+ PTRELA Q+ + + + V+GG + +Q L ++AT
Sbjct: 74 ---PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVAT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTED 177
PGR+ D LE + L LN ++LDEADRM+D+GF P ++ I E T + T D
Sbjct: 131 PGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLD 190
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
+ N++ A K + TA E+ ++ + + + LL+ S
Sbjct: 191 HSEINEIAAAL--LKNPLHVAIGTAHA------EHQDISQRIYLCDHLDHKEALLSRLLS 242
Query: 238 KKKYRQTVMFTATMPPAVERLA 259
+ ++Q ++FTAT ERLA
Sbjct: 243 DESHKQVIIFTATRADT-ERLA 263
Score = 293 (108.2 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 69/183 (37%), Positives = 101/183 (55%)
Query: 928 NYNSKKKYRQTVMFTATMPPA-VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 986
N + K RQT+MF+AT+ + + +A + L+ P V IG+ + I Q +Y+ D
Sbjct: 172 NEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231
Query: 987 KRKKLME-VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1045
++ L+ +L+ K VIIF + + LA L G+ L G Q R ++
Sbjct: 232 HKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQ 291
Query: 1046 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1105
G + ILV TDVA RG+D+ +VS+VIN+DM K E+Y HRIGRTGRAG +G A+S
Sbjct: 292 FARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 1106 KDD 1108
D
Sbjct: 352 PKD 354
Score = 293 (108.2 bits), Expect = 1.5e-50, Sum P(2) = 1.5e-50
Identities = 69/183 (37%), Positives = 101/183 (55%)
Query: 1603 NYNSKKKYRQTVMFTATMPPA-VERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 1661
N + K RQT+MF+AT+ + + +A + L+ P V IG+ + I Q +Y+ D
Sbjct: 172 NEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLD 231
Query: 1662 KRKKLME-VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 1720
++ L+ +L+ K VIIF + + LA L G+ L G Q R ++
Sbjct: 232 HKEALLSRLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQ 291
Query: 1721 LKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCT 1780
G + ILV TDVA RG+D+ +VS+VIN+DM K E+Y HRIGRTGRAG +G A+S
Sbjct: 292 FARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVG 351
Query: 1781 KDD 1783
D
Sbjct: 352 PKD 354
Score = 49 (22.3 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 953
+ + LL+ S + ++Q ++FTAT ERLA
Sbjct: 231 DHKEALLSRLLSDESHKQVIIFTATRADT-ERLA 263
Score = 49 (22.3 bits), Expect = 6.0e-25, Sum P(2) = 6.0e-25
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLA 1628
+ + LL+ S + ++Q ++FTAT ERLA
Sbjct: 231 DHKEALLSRLLSDESHKQVIIFTATRADT-ERLA 263
Score = 40 (19.1 bits), Expect = 1.5e-50, Sum P(3) = 1.5e-50
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1125 TGRAGKEGLAVSFCTKDD 1142
TGRAG +G A+S D
Sbjct: 337 TGRAGAKGDAISLVGPKD 354
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 300 (110.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 61/167 (36%), Positives = 98/167 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
ATD+ RGI I+ + +VIN+++ E Y HR+GRT RAG+ G+A+S
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALS 360
Score = 300 (110.7 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 61/167 (36%), Positives = 98/167 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
ATD+ RGI I+ + +VIN+++ E Y HR+GRT RAG+ G+A+S
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALS 360
Score = 296 (109.3 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 68/175 (38%), Positives = 104/175 (59%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
++ +L ++++ + K EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL
Sbjct: 24 SFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
+++ P+ A+++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ
Sbjct: 83 RLKTSPE----------QQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
L I++AT GRL D+ ++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 133 QNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 296 (109.3 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 68/175 (38%), Positives = 104/175 (59%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
++ +L ++++ + K EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL
Sbjct: 24 SFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
+++ P+ A+++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ
Sbjct: 83 RLKTSPE----------QQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
L I++AT GRL D+ ++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 133 QNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 288 (106.4 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 66/154 (42%), Positives = 94/154 (61%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL +++ P+ A+
Sbjct: 44 EPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTSPE----------QQAL 93
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ L I++AT GRL D+
Sbjct: 94 VLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDL 153
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 154 TQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 178 (67.7 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 362 A 362
A
Sbjct: 314 A 314
Score = 41 (19.5 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 297 LMEVLNRGVKKPVIIFVNQKKGA----DVLAKGLEKLGYNACTLHGG--KGQEQRELALN 350
L+E L ++ ++ V ++ A +VL LG N L GG K ++Q LA N
Sbjct: 80 LLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAEN 139
Score = 38 (18.4 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1125 TGRAGKEGLAVS 1136
T RAG+ G+A+S
Sbjct: 349 TARAGQHGIALS 360
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 300 (110.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 61/167 (36%), Positives = 98/167 (58%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
ATD+ RGI I+ + +VIN+++ E Y HR+GRT RAG+ G+A+S
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALS 360
Score = 300 (110.7 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 61/167 (36%), Positives = 98/167 (58%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
ATD+ RGI I+ + +VIN+++ E Y HR+GRT RAG+ G+A+S
Sbjct: 314 ATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALS 360
Score = 296 (109.3 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 68/175 (38%), Positives = 104/175 (59%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
++ +L ++++ + K EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL
Sbjct: 24 SFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
+++ P+ A+++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ
Sbjct: 83 RLKTSPE----------QQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
L I++AT GRL D+ ++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 133 QNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 296 (109.3 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 68/175 (38%), Positives = 104/175 (59%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
++ +L ++++ + K EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL
Sbjct: 24 SFSSLALSADLIQALPK-AITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLE 82
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
+++ P+ A+++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ
Sbjct: 83 RLKTSPE----------QQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQ 132
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
L I++AT GRL D+ ++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 133 QNALAENPNILVATTGRLFDLTQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 288 (106.4 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 66/154 (42%), Positives = 94/154 (61%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
EP+ IQ IP L +D+ +A TGSGKTLA+ LPLL +++ P+ A+
Sbjct: 44 EPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTSPE----------QQAL 93
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
++ PTRELA Q+ E GT LG+ T+ + GG+ + EQ L I++AT GRL D+
Sbjct: 94 VLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDL 153
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 162
++ L LN+ T +VLDEADR++DMGF P VQ +
Sbjct: 154 TQSG-LRLNRVTTLVLDEADRLLDMGFWPQVQAL 186
Score = 178 (67.7 bits), Expect = 3.6e-36, Sum P(3) = 3.6e-36
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVM +AT ++ A+ +R P V + +++ +Y++++ K + L+ +L
Sbjct: 194 RQTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALL 253
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ V++F+ K+ AD L K L K G A LHG K Q +RE AL K G+ +L+
Sbjct: 254 KQHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLI 313
Query: 362 A 362
A
Sbjct: 314 A 314
Score = 41 (19.5 bits), Expect = 5.8e-24, Sum P(3) = 5.8e-24
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 297 LMEVLNRGVKKPVIIFVNQKKGA----DVLAKGLEKLGYNACTLHGG--KGQEQRELALN 350
L+E L ++ ++ V ++ A +VL LG N L GG K ++Q LA N
Sbjct: 80 LLERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAEN 139
Score = 38 (18.4 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 1125 TGRAGKEGLAVS 1136
T RAG+ G+A+S
Sbjct: 349 TARAGQHGIALS 360
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 435 (158.2 bits), Expect = 9.7e-37, Sum P(4) = 9.7e-37
Identities = 97/205 (47%), Positives = 124/205 (60%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
I I+G P PV +W + L + + +I +GY +PT IQ QAIP RD+IGVA+TG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT+AFLLP+ I K R +GP AIIM PTRELA QI E F L IR
Sbjct: 466 SGKTIAFLLPMFRHI----KDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMI 892
GG ++Q L+ G EIV+ TPGR+IDVL R L++CTY+VLDEADRM
Sbjct: 522 ACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMF 581
Query: 893 DMGFEPDVQKILEYMPVTNLKPDTE 917
D+GFEP V +I + N++PD +
Sbjct: 582 DLGFEPQVMRI-----INNIRPDRQ 601
Score = 435 (158.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 97/205 (47%), Positives = 124/205 (60%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
I I+G P PV +W + L + + +I +GY +PT IQ QAIP RD+IGVA+TG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT+AFLLP+ I K R +GP AIIM PTRELA QI E F L IR
Sbjct: 466 SGKTIAFLLPMFRHI----KDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE---NRYLVLNQCTYIVLDEADRMI 1567
GG ++Q L+ G EIV+ TPGR+IDVL R L++CTY+VLDEADRM
Sbjct: 522 ACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMF 581
Query: 1568 DMGFEPDVQKILEYMPVTNLKPDTE 1592
D+GFEP V +I + N++PD +
Sbjct: 582 DLGFEPQVMRI-----INNIRPDRQ 601
Score = 398 (145.2 bits), Expect = 7.0e-33, P = 7.0e-33
Identities = 94/259 (36%), Positives = 145/259 (55%)
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQT 1613
IV+ RMID+ + ++ T L D D D E +++ N+ + RQT
Sbjct: 544 IVVCTPGRMIDV-LSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602
Query: 1614 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL--- 1670
V+F+AT P A+E LAR L++P + +G +EQIV + E+ K +L+E+L
Sbjct: 603 VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL 662
Query: 1671 -NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1729
N + ++FV++++ AD L L K GY + ++HGGK Q R+ ++ K G D+L
Sbjct: 663 YNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVL 722
Query: 1730 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1789
+AT V RG+D+K + +V+NYD +EDY HR+GRTGRAG G+AV+F T + D
Sbjct: 723 IATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVD 782
Query: 1790 L-KQMMISS-PVSTCPPEL 1806
+ K + +S PV P EL
Sbjct: 783 IAKALKMSKQPV---PKEL 798
Score = 396 (144.5 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 91/252 (36%), Positives = 142/252 (56%)
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQT 938
IV+ RMID+ + ++ T L D D D E +++ N+ + RQT
Sbjct: 544 IVVCTPGRMIDV-LSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQT 602
Query: 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL--- 995
V+F+AT P A+E LAR L++P + +G +EQIV + E+ K +L+E+L
Sbjct: 603 VLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGEL 662
Query: 996 -NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054
N + ++FV++++ AD L L K GY + ++HGGK Q R+ ++ K G D+L
Sbjct: 663 YNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVL 722
Query: 1055 VATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYD 1114
+AT V RG+D+K + +V+NYD +EDY HR+GRTGRAG G+AV+F T + D
Sbjct: 723 IATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVD 782
Query: 1115 L-KQMMISS-PV 1124
+ K + +S PV
Sbjct: 783 IAKALKMSKQPV 794
Score = 390 (142.3 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 89/179 (49%), Positives = 111/179 (62%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I +GY +PT IQ QAIP RD+IGVA+TGSGKT+AFLLP+ I K R
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHI----KDQRPLK 487
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+GP AIIM PTRELA QI E F L IR GG ++Q L+ G EIV+
Sbjct: 488 TGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVC 547
Query: 121 TPGRLIDVLE---NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
TPGR+IDVL R L++CTY+VLDEADRM D+GFEP V +I + N++PD +
Sbjct: 548 TPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRI-----INNIRPDRQ 601
Score = 225 (84.3 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 48/139 (34%), Positives = 81/139 (58%)
Query: 228 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYI 287
E +++ N+ + RQTV+F+AT P A+E LAR L++P + +G +EQIV +
Sbjct: 586 EPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEV 645
Query: 288 LSEQDKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQE 343
E+ K +L+E+L N + ++FV++++ AD L L K GY + ++HGGK Q
Sbjct: 646 RPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQH 705
Query: 344 QRELALNSLKGGSKDILMA 362
R+ ++ K G D+L+A
Sbjct: 706 DRDSTISDYKAGVFDVLIA 724
Score = 59 (25.8 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISS-PVSTCPPEL 1165
TGRAG G+AV+F T + D+ K + +S PV P EL
Sbjct: 759 TGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPV---PKEL 798
Score = 45 (20.9 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 1303 KERHQVQFFGRGNIAGIDI--KAQKRDQSKFYGEMLEKRRTEA 1343
KE+ FG ++ +D A+++ Q K YGE E TEA
Sbjct: 813 KEKAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEA 855
Score = 45 (20.9 bits), Expect = 6.5e-49, Sum P(4) = 6.5e-49
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 628 KERHQVQFFGRGNIAGIDI--KAQKRDQSKFYGEMLEKRRTEA 668
KE+ FG ++ +D A+++ Q K YGE E TEA
Sbjct: 813 KEKAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVETEA 855
Score = 43 (20.2 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 1595 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
EDE + +K + +T P ++R+ + A + + + + I
Sbjct: 846 EDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFANQTAQSNKLTQPIS 905
Query: 1655 YILSEQDKRKKLMEV 1669
I ++ D+ K ME+
Sbjct: 906 IIKTDGDEYKAKMEI 920
Score = 43 (20.2 bits), Expect = 6.5e-49, Sum P(4) = 6.5e-49
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 920 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 979
EDE + +K + +T P ++R+ + A + + + + I
Sbjct: 846 EDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFANQTAQSNKLTQPIS 905
Query: 980 YILSEQDKRKKLMEV 994
I ++ D+ K ME+
Sbjct: 906 IIKTDGDEYKAKMEI 920
Score = 43 (20.2 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 226 EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
EDE + +K + +T P ++R+ + A + + + + I
Sbjct: 846 EDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFANQTAQSNKLTQPIS 905
Query: 286 YILSEQDKRKKLMEV 300
I ++ D+ K ME+
Sbjct: 906 IIKTDGDEYKAKMEI 920
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 419 (152.6 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 91/222 (40%), Positives = 137/222 (61%)
Query: 697 KSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
+ + +++ ++ + R+ + ITI +G VP PV + + P +++ ++ PTPIQ
Sbjct: 81 EDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQ 140
Query: 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815
Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP +++APTR
Sbjct: 141 IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLVLAPTR 196
Query: 816 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 875
ELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+LE
Sbjct: 197 ELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVT 256
Query: 876 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 419 (152.6 bits), Expect = 8.6e-38, P = 8.6e-38
Identities = 91/222 (40%), Positives = 137/222 (61%)
Query: 1372 KSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 1430
+ + +++ ++ + R+ + ITI +G VP PV + + P +++ ++ PTPIQ
Sbjct: 81 EDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQ 140
Query: 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490
Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP +++APTR
Sbjct: 141 IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLVLAPTR 196
Query: 1491 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 1550
ELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+LE
Sbjct: 197 ELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVT 256
Query: 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 389 (142.0 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 103/263 (39%), Positives = 143/263 (54%)
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 1607
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKK 1665
+ RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K
Sbjct: 289 RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGN 348
Query: 1666 LMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723
L +L R K +I+FV KK AD + K L G A +HG K QE+R LN K
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT 408
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G I++ATDVA RG+DIK+V VIN+D IEDY HRIGRTGRAG G + +F T D
Sbjct: 409 GKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADK 468
Query: 1784 SHLFYDLKQMMISSPVSTCPPEL 1806
L DL +++ S PP+L
Sbjct: 469 YRLAKDLVKILRESE-QPVPPQL 490
Score = 381 (139.2 bits), Expect = 9.6e-33, P = 9.6e-33
Identities = 100/254 (39%), Positives = 139/254 (54%)
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 932
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 933 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKK 990
+ RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K
Sbjct: 289 RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGN 348
Query: 991 LMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048
L +L R K +I+FV KK AD + K L G A +HG K QE+R LN K
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT 408
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
G I++ATDVA RG+DIK+V VIN+D IEDY HRIGRTGRAG G + +F T D
Sbjct: 409 GKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADK 468
Query: 1109 SHLFYDLKQMMISS 1122
L DL +++ S
Sbjct: 469 YRLAKDLVKILRES 482
Score = 374 (136.7 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 81/167 (48%), Positives = 109/167 (65%)
Query: 10 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 69
PTPIQ Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP ++
Sbjct: 136 PTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLV 191
Query: 70 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 129
+APTRELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+L
Sbjct: 192 LAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLL 251
Query: 130 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
E L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 252 EQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 190 (71.9 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 48/125 (38%), Positives = 69/125 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKKLME 299
RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K L
Sbjct: 292 RQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKS 351
Query: 300 VLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+L R K +I+FV KK AD + K L G A +HG K QE+R LN K G
Sbjct: 352 LLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKS 411
Query: 358 DILMA 362
I++A
Sbjct: 412 PIMIA 416
Score = 65 (27.9 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG G + +F T D L DL +++ S PP+L
Sbjct: 451 TGRAGSHGASFTFLTADKYRLAKDLVKILRESE-QPVPPQL 490
Score = 47 (21.6 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 136 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 191
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 192 KKYRQTVMFTATMP 205
+ RQT+M++AT P
Sbjct: 289 RPDRQTLMWSATWP 302
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 419 (152.6 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 91/222 (40%), Positives = 137/222 (61%)
Query: 697 KSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
+ + +++ ++ + R+ + ITI +G VP PV + + P +++ ++ PTPIQ
Sbjct: 81 EDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQ 140
Query: 756 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 815
Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP +++APTR
Sbjct: 141 IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLVLAPTR 196
Query: 816 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 875
ELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+LE
Sbjct: 197 ELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVT 256
Query: 876 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 419 (152.6 bits), Expect = 8.6e-38, P = 8.6e-38
Identities = 91/222 (40%), Positives = 137/222 (61%)
Query: 1372 KSLDEMTERDWRIFREDYSITI-KGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 1430
+ + +++ ++ + R+ + ITI +G VP PV + + P +++ ++ PTPIQ
Sbjct: 81 EDISKLSTKEVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQ 140
Query: 1431 RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTR 1490
Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP +++APTR
Sbjct: 141 IQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLVLAPTR 196
Query: 1491 ELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYL 1550
ELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+LE
Sbjct: 197 ELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVT 256
Query: 1551 VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 389 (142.0 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 103/263 (39%), Positives = 143/263 (54%)
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 1607
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKK 1665
+ RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K
Sbjct: 289 RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGN 348
Query: 1666 LMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1723
L +L R K +I+FV KK AD + K L G A +HG K QE+R LN K
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT 408
Query: 1724 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
G I++ATDVA RG+DIK+V VIN+D IEDY HRIGRTGRAG G + +F T D
Sbjct: 409 GKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADK 468
Query: 1784 SHLFYDLKQMMISSPVSTCPPEL 1806
L DL +++ S PP+L
Sbjct: 469 YRLAKDLVKILRESE-QPVPPQL 490
Score = 381 (139.2 bits), Expect = 9.6e-33, P = 9.6e-33
Identities = 100/254 (39%), Positives = 139/254 (54%)
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 932
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 933 KKYRQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKK 990
+ RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K
Sbjct: 289 RPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGN 348
Query: 991 LMEVLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKG 1048
L +L R K +I+FV KK AD + K L G A +HG K QE+R LN K
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKT 408
Query: 1049 GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
G I++ATDVA RG+DIK+V VIN+D IEDY HRIGRTGRAG G + +F T D
Sbjct: 409 GKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADK 468
Query: 1109 SHLFYDLKQMMISS 1122
L DL +++ S
Sbjct: 469 YRLAKDLVKILRES 482
Score = 374 (136.7 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 81/167 (48%), Positives = 109/167 (65%)
Query: 10 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAII 69
PTPIQ Q PI L +D+IG AETGSGKTLAF+LP V I + P + + D GP ++
Sbjct: 136 PTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNL-KYGD---GPIVLV 191
Query: 70 MAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL 129
+APTRELA+QI +E KF T IR GG+ + Q + L+ G I+IA PGRLID+L
Sbjct: 192 LAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLL 251
Query: 130 ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
E L + TY+VLDEAD+M+DMGFE ++KI++ ++PD +
Sbjct: 252 EQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVD-----QIRPDRQ 293
Score = 190 (71.9 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 48/125 (38%), Positives = 69/125 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLR-RPATVYIGSVGKPTER-IEQIVYILSEQDKRKKLME 299
RQT+M++AT P V+ LA+ + +P V +GS+ R I+Q +Y+L E +K L
Sbjct: 292 RQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKS 351
Query: 300 VLNRGVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+L R K +I+FV KK AD + K L G A +HG K QE+R LN K G
Sbjct: 352 LLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKS 411
Query: 358 DILMA 362
I++A
Sbjct: 412 PIMIA 416
Score = 65 (27.9 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAG G + +F T D L DL +++ S PP+L
Sbjct: 451 TGRAGSHGASFTFLTADKYRLAKDLVKILRESE-QPVPPQL 490
Score = 47 (21.6 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 136 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 191
L Q +I++ R+ID+ E Q + M VT L D D D E ++ +
Sbjct: 233 LKQGVHILIACPGRLIDL-LE---QNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
Query: 192 KKYRQTVMFTATMP 205
+ RQT+M++AT P
Sbjct: 289 RPDRQTLMWSATWP 302
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 482 (174.7 bits), Expect = 6.5e-41, Sum P(3) = 6.5e-41
Identities = 103/223 (46%), Positives = 139/223 (62%)
Query: 699 LDEMTERDWRIFREDYS-ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 757
L MT D +R D I +KG P P++ W + + + +E++ ++G+ +PTPIQ Q
Sbjct: 480 LTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQ 539
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 817
AIP + RD+IG+A+TGSGKTLAF+LP+ I P MED D G AIIMAPTREL
Sbjct: 540 AIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPS---MEDGD-GAIAIIMAPTREL 595
Query: 818 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 874
QI ++ KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 655
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 656 TNLRRVTYVVLDEADRMFDMGFEPQVMRIID-----NVRPDRQ 693
Score = 482 (174.7 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 103/223 (46%), Positives = 139/223 (62%)
Query: 1374 LDEMTERDWRIFREDYS-ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQ 1432
L MT D +R D I +KG P P++ W + + + +E++ ++G+ +PTPIQ Q
Sbjct: 480 LTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQ 539
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTREL 1492
AIP + RD+IG+A+TGSGKTLAF+LP+ I P MED D G AIIMAPTREL
Sbjct: 540 AIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPS---MEDGD-GAIAIIMAPTREL 595
Query: 1493 AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENRY 1549
QI ++ KF LG+R V V GG EQ L+ G EI++ TPGR+ID+L R
Sbjct: 596 CMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRV 655
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 656 TNLRRVTYVVLDEADRMFDMGFEPQVMRIID-----NVRPDRQ 693
Score = 421 (153.3 bits), Expect = 5.0e-50, Sum P(4) = 5.0e-50
Identities = 90/179 (50%), Positives = 118/179 (65%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
++ ++G+ +PTPIQ QAIP + RD+IG+A+TGSGKTLAF+LP+ I P MED
Sbjct: 524 VLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPS---MED 580
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
D G AIIMAPTREL QI ++ KF LG+R V V GG EQ L+ G EI++
Sbjct: 581 GD-GAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVC 639
Query: 121 TPGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
TPGR+ID+L R L + TY+VLDEADRM DMGFEP V +I++ N++PD +
Sbjct: 640 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIID-----NVRPDRQ 693
Score = 381 (139.2 bits), Expect = 8.4e-30, Sum P(2) = 8.4e-30
Identities = 95/256 (37%), Positives = 145/256 (56%)
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQT 1613
I++ RMIDM + ++ VT + D D D E +++ ++ + RQT
Sbjct: 636 IIVCTPGRMIDM-LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQT 694
Query: 1614 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 1673
VMF+AT P +E LAR L++P V +G + +EQ V IL++ K KL+E+L G
Sbjct: 695 VMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELL--G 752
Query: 1674 VKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ + +I+FV++++ AD+L + L K Y +LHGG Q R+ + K G +L+
Sbjct: 753 IYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLI 812
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
AT VA RG+D+KD+ +V+NYD+ EDY HR GRTGRAGK+G A +F T + S D+
Sbjct: 813 ATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDI 872
Query: 1791 KQMMISSPVSTCPPEL 1806
+ M S + P EL
Sbjct: 873 IRAMDLSG-TLIPAEL 887
Score = 379 (138.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 91/244 (37%), Positives = 140/244 (57%)
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQT 938
I++ RMIDM + ++ VT + D D D E +++ ++ + RQT
Sbjct: 636 IIVCTPGRMIDM-LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQT 694
Query: 939 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 998
VMF+AT P +E LAR L++P V +G + +EQ V IL++ K KL+E+L G
Sbjct: 695 VMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELL--G 752
Query: 999 VKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ + +I+FV++++ AD+L + L K Y +LHGG Q R+ + K G +L+
Sbjct: 753 IYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLI 812
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
AT VA RG+D+KD+ +V+NYD+ EDY HR GRTGRAGK+G A +F T + S D+
Sbjct: 813 ATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDI 872
Query: 1116 KQMM 1119
+ M
Sbjct: 873 IRAM 876
Score = 199 (75.1 bits), Expect = 5.0e-50, Sum P(4) = 5.0e-50
Identities = 47/124 (37%), Positives = 73/124 (58%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTVMF+AT P +E LAR L++P V +G + +EQ V IL++ K KL+E+L
Sbjct: 692 RQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELL 751
Query: 302 NRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
G+ + +I+FV++++ AD+L + L K Y +LHGG Q R+ + K G
Sbjct: 752 --GIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVR 809
Query: 359 ILMA 362
+L+A
Sbjct: 810 LLIA 813
Score = 61 (26.5 bits), Expect = 5.0e-50, Sum P(4) = 5.0e-50
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1165
TGRAGK+G A +F T + S D+ + M S + P EL
Sbjct: 848 TGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG-TLIPAEL 887
Score = 54 (24.1 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 142 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSKKKYRQT 197
I++ RMIDM + ++ VT + D D D E +++ ++ + RQT
Sbjct: 636 IIVCTPGRMIDM-LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQT 694
Query: 198 VMFTATMP 205
VMF+AT P
Sbjct: 695 VMFSATFP 702
Score = 46 (21.3 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1244 QDPEEKELNKDKEREGEAIKE 1264
Q +E+E K+KERE E +E
Sbjct: 118 QREKEREREKEKEREKEKERE 138
Score = 37 (18.1 bits), Expect = 5.0e-50, Sum P(4) = 5.0e-50
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
YL + C+ + + +A R I + ++ K+
Sbjct: 1180 YLAIESCSELAVQKAKREITRLIKEELLKL 1209
Score = 37 (18.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 874 YLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
YL + C+ + + +A R I + ++ K+
Sbjct: 1180 YLAIESCSELAVQKAKREITRLIKEELLKL 1209
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 303 (111.7 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 10 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 66
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 303 (111.7 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 807
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 808 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 863
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 864 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 303 (111.7 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 1482
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 1538
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 1539 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 292 (107.8 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 69/183 (37%), Positives = 102/183 (55%)
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 979
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
L K +LVATD+ RGI + + +VIN D+ S Y HRIGRT RAG +GL
Sbjct: 310 SQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGL 369
Query: 1100 AVS 1102
A+S
Sbjct: 370 AIS 372
Score = 292 (107.8 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 69/183 (37%), Positives = 102/183 (55%)
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 1654
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
L K +LVATD+ RGI + + +VIN D+ S Y HRIGRT RAG +GL
Sbjct: 310 SQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGL 369
Query: 1775 AVS 1777
A+S
Sbjct: 370 AIS 372
Score = 169 (64.5 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 227 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 285
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 346 ELALNSLKGGSKDILMA 362
L K +L+A
Sbjct: 310 SQTLADFKADRIQVLVA 326
Score = 52 (23.4 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPA------KILEYMPVTNLKPDTEDA---EDENK 230
D KL+A +K QT++F+AT+P A K+L P+ ++ T +A E E +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPL-KVEASTRNAVVGEIEEQ 248
Query: 231 L-LANYNSK 238
L L N SK
Sbjct: 249 LYLVNKGSK 257
Score = 48 (22.0 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 733 ASLPTEILEIIEKIGYAEPTPIQ---RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
A+LP + + K+ +P ++ R A+ +G + V + + L LL W
Sbjct: 212 ATLPEALDSLAGKLLTNDPLKVEASTRNAV-VGEIEEQLYLVNKGSKAQALIALLKQYQW 270
Query: 790 IQSLPKIARMEDAD 803
Q L I+ +DAD
Sbjct: 271 PQVLVFISARDDAD 284
Score = 48 (22.0 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 1408 ASLPTEILEIIEKIGYAEPTPIQ---RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
A+LP + + K+ +P ++ R A+ +G + V + + L LL W
Sbjct: 212 ATLPEALDSLAGKLLTNDPLKVEASTRNAV-VGEIEEQLYLVNKGSKAQALIALLKQYQW 270
Query: 1465 IQSLPKIARMEDAD 1478
Q L I+ +DAD
Sbjct: 271 PQVLVFISARDDAD 284
Score = 41 (19.5 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1125 TGRAGKEGLAVS 1136
T RAG +GLA+S
Sbjct: 361 TARAGAKGLAIS 372
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 303 (111.7 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 10 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 66
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 67 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 303 (111.7 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 751 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 807
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 808 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 863
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 864 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 303 (111.7 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 67/165 (40%), Positives = 106/165 (64%)
Query: 1426 PTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLL--VWIQ-SLPKIARMEDADQGPY 1482
PT +Q+ AIP L RD++ +++TGSGKT AF LPLL +W Q ++ A+ A + P
Sbjct: 39 PTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAK-PL 97
Query: 1483 AIIMAPTRELAQQIEEETNKFGTPLG----IRTVLVVGGLSREEQGFRLRLGCEIVIATP 1538
A+++ PTRELA Q+ E + + L + L+ GG++ E+Q L ++V+ATP
Sbjct: 98 ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATP 157
Query: 1539 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
GRL+D+ ++ L+ ++VLDEADR+++MGF PD+QK++ MP
Sbjct: 158 GRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMP 202
Score = 292 (107.8 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 69/183 (37%), Positives = 102/183 (55%)
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 979
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
L K +LVATD+ RGI + + +VIN D+ S Y HRIGRT RAG +GL
Sbjct: 310 SQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGL 369
Query: 1100 AVS 1102
A+S
Sbjct: 370 AIS 372
Score = 292 (107.8 bits), Expect = 6.5e-50, Sum P(2) = 6.5e-50
Identities = 69/183 (37%), Positives = 102/183 (55%)
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 1654
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
L K +LVATD+ RGI + + +VIN D+ S Y HRIGRT RAG +GL
Sbjct: 310 SQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGL 369
Query: 1775 AVS 1777
A+S
Sbjct: 370 AIS 372
Score = 169 (64.5 bits), Expect = 3.6e-37, Sum P(3) = 3.6e-37
Identities = 44/137 (32%), Positives = 71/137 (51%)
Query: 227 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR-PATVYIGSVGKPTERIEQIV 285
D KL+A +K QT++F+AT+P A++ LA L P V + IE+ +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQL 249
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
Y++++ K + L+ +L + V++F++ + AD +AK L K G NA LHG K Q R
Sbjct: 250 YLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVR 309
Query: 346 ELALNSLKGGSKDILMA 362
L K +L+A
Sbjct: 310 SQTLADFKADRIQVLVA 326
Score = 52 (23.4 bits), Expect = 4.8e-25, Sum P(3) = 4.8e-25
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPA------KILEYMPVTNLKPDTEDA---EDENK 230
D KL+A +K QT++F+AT+P A K+L P+ ++ T +A E E +
Sbjct: 193 DMQKLMAMMPKRK---QTLLFSATLPEALDSLAGKLLTNDPL-KVEASTRNAVVGEIEEQ 248
Query: 231 L-LANYNSK 238
L L N SK
Sbjct: 249 LYLVNKGSK 257
Score = 48 (22.0 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 733 ASLPTEILEIIEKIGYAEPTPIQ---RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
A+LP + + K+ +P ++ R A+ +G + V + + L LL W
Sbjct: 212 ATLPEALDSLAGKLLTNDPLKVEASTRNAV-VGEIEEQLYLVNKGSKAQALIALLKQYQW 270
Query: 790 IQSLPKIARMEDAD 803
Q L I+ +DAD
Sbjct: 271 PQVLVFISARDDAD 284
Score = 48 (22.0 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 1408 ASLPTEILEIIEKIGYAEPTPIQ---RQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
A+LP + + K+ +P ++ R A+ +G + V + + L LL W
Sbjct: 212 ATLPEALDSLAGKLLTNDPLKVEASTRNAV-VGEIEEQLYLVNKGSKAQALIALLKQYQW 270
Query: 1465 IQSLPKIARMEDAD 1478
Q L I+ +DAD
Sbjct: 271 PQVLVFISARDDAD 284
Score = 41 (19.5 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 1125 TGRAGKEGLAVS 1136
T RAG +GLA+S
Sbjct: 361 TARAGAKGLAIS 372
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 300 (110.7 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 66/172 (38%), Positives = 98/172 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ I+F N K + L LE G+ L G Q++R L G DILV
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
ATDVA RG+ I DVS V NYD+ EDY HRIGRTGRAG +G++VSF ++
Sbjct: 312 ATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
Score = 300 (110.7 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 66/172 (38%), Positives = 98/172 (56%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ I+F N K + L LE G+ L G Q++R L G DILV
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
ATDVA RG+ I DVS V NYD+ EDY HRIGRTGRAG +G++VSF ++
Sbjct: 312 ATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
Score = 291 (107.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 73/182 (40%), Positives = 105/182 (57%)
Query: 729 NWKEASLPT--EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
N K A LP E+ + + + G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+
Sbjct: 8 NQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVAT 67
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
+ S I +Q P AIIMAPTRELA QI ++ ++ +V GG S +
Sbjct: 68 FNHLLS-SSIPEGRQLNQ-PRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYD 125
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
Q L G +I+I T GR+ID + + LN +VLDEADRM D+GF D++ +
Sbjct: 126 VQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 907 MP 908
MP
Sbjct: 186 MP 187
Score = 291 (107.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 73/182 (40%), Positives = 105/182 (57%)
Query: 1404 NWKEASLPT--EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
N K A LP E+ + + + G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+
Sbjct: 8 NQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVAT 67
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+ S I +Q P AIIMAPTRELA QI ++ ++ +V GG S +
Sbjct: 68 FNHLLS-SSIPEGRQLNQ-PRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYD 125
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
Q L G +I+I T GR+ID + + LN +VLDEADRM D+GF D++ +
Sbjct: 126 VQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 1582 MP 1583
MP
Sbjct: 186 MP 187
Score = 276 (102.2 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 67/162 (41%), Positives = 95/162 (58%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+ + S I +Q P
Sbjct: 28 GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-SSIPEGRQLNQ-P 85
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
AIIMAPTRELA QI ++ ++ +V GG S + Q L G +I+I T GR+
Sbjct: 86 RAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRI 145
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ID + + LN +VLDEADRM D+GF D++ + MP
Sbjct: 146 IDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 132 (51.5 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ I+F N K + L LE G+ L G Q++R L G DIL+
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 362 A 362
A
Sbjct: 312 A 312
Score = 53 (23.7 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1107 DDSHLF-YDL----KQMMISSPVTGRAGKEGLAVSFCTKD 1141
D SH++ YDL + + TGRAG +G++VSF ++
Sbjct: 324 DVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 300 (110.7 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 66/172 (38%), Positives = 98/172 (56%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ I+F N K + L LE G+ L G Q++R L G DILV
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1107
ATDVA RG+ I DVS V NYD+ EDY HRIGRTGRAG +G++VSF ++
Sbjct: 312 ATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
Score = 300 (110.7 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 66/172 (38%), Positives = 98/172 (56%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ I+F N K + L LE G+ L G Q++R L G DILV
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD 1782
ATDVA RG+ I DVS V NYD+ EDY HRIGRTGRAG +G++VSF ++
Sbjct: 312 ATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
Score = 291 (107.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 73/182 (40%), Positives = 105/182 (57%)
Query: 729 NWKEASLPT--EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 786
N K A LP E+ + + + G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+
Sbjct: 8 NQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVAT 67
Query: 787 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 846
+ S I +Q P AIIMAPTRELA QI ++ ++ +V GG S +
Sbjct: 68 FNHLLS-SSIPEGRQLNQ-PRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYD 125
Query: 847 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 906
Q L G +I+I T GR+ID + + LN +VLDEADRM D+GF D++ +
Sbjct: 126 VQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 907 MP 908
MP
Sbjct: 186 MP 187
Score = 291 (107.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 73/182 (40%), Positives = 105/182 (57%)
Query: 1404 NWKEASLPT--EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPL 1461
N K A LP E+ + + + G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+
Sbjct: 8 NQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVAT 67
Query: 1462 LVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSRE 1521
+ S I +Q P AIIMAPTRELA QI ++ ++ +V GG S +
Sbjct: 68 FNHLLS-SSIPEGRQLNQ-PRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYD 125
Query: 1522 EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEY 1581
Q L G +I+I T GR+ID + + LN +VLDEADRM D+GF D++ +
Sbjct: 126 VQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRR 185
Query: 1582 MP 1583
MP
Sbjct: 186 MP 187
Score = 276 (102.2 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 67/162 (41%), Positives = 95/162 (58%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ TPIQ ++P+ LQ++DI G A+TG+GKT+AFL+ + S I +Q P
Sbjct: 28 GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-SSIPEGRQLNQ-P 85
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
AIIMAPTRELA QI ++ ++ +V GG S + Q L G +I+I T GR+
Sbjct: 86 RAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRI 145
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
ID + + LN +VLDEADRM D+GF D++ + MP
Sbjct: 146 IDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
Score = 132 (51.5 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
R ++F+AT+ V+ LA ++ P V I K ++ I++ ++ S++DK + L+ ++
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLI 251
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ I+F N K + L LE G+ L G Q++R L G DIL+
Sbjct: 252 EEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILV 311
Query: 362 A 362
A
Sbjct: 312 A 312
Score = 53 (23.7 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1107 DDSHLF-YDL----KQMMISSPVTGRAGKEGLAVSFCTKD 1141
D SH++ YDL + + TGRAG +G++VSF ++
Sbjct: 324 DVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEE 363
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 490 (177.5 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 106/299 (35%), Positives = 172/299 (57%)
Query: 697 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 756
K + MT+ + +R++ + + G VP P++ W + L ++IL+ ++K+ Y +P PIQ
Sbjct: 498 KDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQT 557
Query: 757 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 816
QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A GP ++MAPTRE
Sbjct: 558 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EAGDGPIGLVMAPTRE 613
Query: 817 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENR 873
L QQI + KF PLGIR V V GG +Q L+ G EIV+ TPGR+ID+L +
Sbjct: 614 LVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 673
Query: 874 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
L + T++V+DEADRM DMGFEP + +I++ N++P+ + +L + +
Sbjct: 674 ITNLRRVTFLVMDEADRMFDMGFEPQITRIIQ-----NIRPERQT------VLFSATFPR 722
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
+ P ++ RS + + T + V ++R +++ +L E ++ K++
Sbjct: 723 QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLELLGEWSEKGKIL 780
Score = 490 (177.5 bits), Expect = 9.0e-42, Sum P(2) = 9.0e-42
Identities = 106/299 (35%), Positives = 172/299 (57%)
Query: 1372 KSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQR 1431
K + MT+ + +R++ + + G VP P++ W + L ++IL+ ++K+ Y +P PIQ
Sbjct: 498 KDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQT 557
Query: 1432 QAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRE 1491
QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A GP ++MAPTRE
Sbjct: 558 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EAGDGPIGLVMAPTRE 613
Query: 1492 LAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVL---ENR 1548
L QQI + KF PLGIR V V GG +Q L+ G EIV+ TPGR+ID+L +
Sbjct: 614 LVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGK 673
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
L + T++V+DEADRM DMGFEP + +I++ N++P+ + +L + +
Sbjct: 674 ITNLRRVTFLVMDEADRMFDMGFEPQITRIIQ-----NIRPERQT------VLFSATFPR 722
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
+ P ++ RS + + T + V ++R +++ +L E ++ K++
Sbjct: 723 QVETLARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLELLGEWSEKGKIL 780
Score = 407 (148.3 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 84/178 (47%), Positives = 117/178 (65%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
++K+ Y +P PIQ QA+PI + RD IGVA+TGSGKTL F+LP+L I+ P + +A
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV----EA 599
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP ++MAPTREL QQI + KF PLGIR V V GG +Q L+ G EIV+ T
Sbjct: 600 GDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCT 659
Query: 122 PGRLIDVL---ENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
PGR+ID+L + L + T++V+DEADRM DMGFEP + +I++ N++P+ +
Sbjct: 660 PGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQ-----NIRPERQ 712
Score = 382 (139.5 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 93/255 (36%), Positives = 142/255 (55%)
Query: 1552 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 1607
L + T IV+ RMID+ KI VT L D D D E ++ +
Sbjct: 649 LKRGTEIVVCTPGRMIDI-LCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Query: 1608 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 1667
+ RQTV+F+AT P VE LAR L +P + +G + I Q+V + E D+ +L+
Sbjct: 708 RPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 767
Query: 1668 EVLNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
E+L +K +++FV ++ D L + + K Y +LHGGK Q RE ++ K
Sbjct: 768 ELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVC 827
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
++L+AT VA RG+D+K++ +V+N+D EDY HR+GRTGRAG++G AV+F ++DD+
Sbjct: 828 NLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKY 887
Query: 1787 FYDL-KQMMISS-PV 1799
DL K + +S PV
Sbjct: 888 APDLVKALELSEQPV 902
Score = 382 (139.5 bits), Expect = 4.9e-29, Sum P(3) = 4.9e-29
Identities = 93/255 (36%), Positives = 142/255 (55%)
Query: 877 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 932
L + T IV+ RMID+ KI VT L D D D E ++ +
Sbjct: 649 LKRGTEIVVCTPGRMIDI-LCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Query: 933 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 992
+ RQTV+F+AT P VE LAR L +P + +G + I Q+V + E D+ +L+
Sbjct: 708 RPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 767
Query: 993 EVLNRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
E+L +K +++FV ++ D L + + K Y +LHGGK Q RE ++ K
Sbjct: 768 ELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVC 827
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
++L+AT VA RG+D+K++ +V+N+D EDY HR+GRTGRAG++G AV+F ++DD+
Sbjct: 828 NLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKY 887
Query: 1112 FYDL-KQMMISS-PV 1124
DL K + +S PV
Sbjct: 888 APDLVKALELSEQPV 902
Score = 194 (73.4 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 42/122 (34%), Positives = 68/122 (55%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQTV+F+AT P VE LAR L +P + +G + I Q+V + E D+ +L+E+L
Sbjct: 711 RQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 770
Query: 302 NRGVKK-PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
+K +++FV ++ D L + + K Y +LHGGK Q RE ++ K ++L
Sbjct: 771 GEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLL 830
Query: 361 MA 362
+A
Sbjct: 831 IA 832
Score = 69 (29.3 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDL-KQMMISS-PV 1158
TGRAG++G AV+F ++DD+ DL K + +S PV
Sbjct: 867 TGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPV 902
Score = 53 (23.7 bits), Expect = 2.6e-12, Sum P(4) = 2.6e-12
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 136 LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE-D---ENKLLANYNSK 191
L + T IV+ RMID+ KI VT L D D D E ++ +
Sbjct: 649 LKRGTEIVVCTPGRMIDI-LCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Query: 192 KKYRQTVMFTATMP 205
+ RQTV+F+AT P
Sbjct: 708 RPERQTVLFSATFP 721
Score = 47 (21.6 bits), Expect = 9.0e-42, Sum P(2) = 9.0e-42
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 1245 DPEEKELNKDKERE 1258
D EE+E K+KERE
Sbjct: 67 DDEEREKRKEKERE 80
Score = 44 (20.5 bits), Expect = 3.4e-43, Sum P(4) = 3.4e-43
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 144 LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 192
L++ + +D E +++ E+ LK E+AE E+K A+ N K
Sbjct: 268 LEDEQKKLDEEVEKRRRRVQEWQ---ELKRKKEEAESESKGDADGNEPK 313
Score = 43 (20.2 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFT--ATMPPAVERLARSYLRRPAT 1637
D D+EDEN ++ + +Q F A + A + A + + P T
Sbjct: 960 DKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVT 1009
Score = 43 (20.2 bits), Expect = 2.4e-47, Sum P(3) = 2.4e-47
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFT--ATMPPAVERLARSYLRRPAT 962
D D+EDEN ++ + +Q F A + A + A + + P T
Sbjct: 960 DKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVT 1009
Score = 43 (20.2 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 221 DTEDAEDENKLLANYNSKKKYRQTVMFT--ATMPPAVERLARSYLRRPAT 268
D D+EDEN ++ + +Q F A + A + A + + P T
Sbjct: 960 DKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVSAPVT 1009
Score = 42 (19.8 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 174 DTEDAEDENKLLANYNSKKKYRQTVMFT---ATMPPAKILEYMPVTNLKPDTEDAEDENK 230
D D+EDEN ++ + +Q F A AK PV+ P T N+
Sbjct: 960 DKSDSEDENDVVRKAGGGEISQQQATFAQIAAIAAAAKAAAAAPVS--APVTA-----NQ 1012
Query: 231 LLAN 234
LLAN
Sbjct: 1013 LLAN 1016
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 305 (112.4 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 61/182 (33%), Positives = 103/182 (56%)
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVL 995
Q ++ +ATMPP V ++R ++R P ++ + E I+Q V + E K L ++
Sbjct: 205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLY 264
Query: 996 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1055
+ +IF N ++ D L + + + +HG Q RE+ + + GS +L+
Sbjct: 265 DTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLI 324
Query: 1056 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR G++G+A++F T DD + D+
Sbjct: 325 TTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDI 384
Query: 1116 KQ 1117
+Q
Sbjct: 385 EQ 386
Score = 305 (112.4 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 61/182 (33%), Positives = 103/182 (56%)
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVL 1670
Q ++ +ATMPP V ++R ++R P ++ + E I+Q V + E K L ++
Sbjct: 205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLY 264
Query: 1671 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILV 1730
+ +IF N ++ D L + + + +HG Q RE+ + + GS +L+
Sbjct: 265 DTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLI 324
Query: 1731 ATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR G++G+A++F T DD + D+
Sbjct: 325 TTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDI 384
Query: 1791 KQ 1792
+Q
Sbjct: 385 EQ 386
Score = 257 (95.5 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 59/180 (32%), Positives = 98/180 (54%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
N+ + +L E+L I G+ +P+ IQ++AI ++ RD+I A++G+GKT F + +L
Sbjct: 31 NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 848
I + I + A+I+APTRELA QI+ G + + + +GG + E
Sbjct: 91 QIDT--SIRECQ-------ALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVRED 141
Query: 849 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
L GC +V+ TPGR+ D++ + L VLDEAD M+ GF+ +Q + + +P
Sbjct: 142 ARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP 201
Score = 257 (95.5 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 59/180 (32%), Positives = 98/180 (54%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
N+ + +L E+L I G+ +P+ IQ++AI ++ RD+I A++G+GKT F + +L
Sbjct: 31 NFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQ 90
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ 1523
I + I + A+I+APTRELA QI+ G + + + +GG + E
Sbjct: 91 QIDT--SIRECQ-------ALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVRED 141
Query: 1524 GFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
L GC +V+ TPGR+ D++ + L VLDEAD M+ GF+ +Q + + +P
Sbjct: 142 ARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP 201
Score = 242 (90.2 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 54/162 (33%), Positives = 89/162 (54%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G+ +P+ IQ++AI ++ RD+I A++G+GKT F + +L I + I +
Sbjct: 49 GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDT--SIRECQ------ 100
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
A+I+APTRELA QI+ G + + + +GG + E L GC +V+ TPGR+
Sbjct: 101 -ALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRV 159
Query: 126 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
D++ + L VLDEAD M+ GF+ +Q + + +P
Sbjct: 160 YDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLP 201
Score = 126 (49.4 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 243 QTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKLMEVL 301
Q ++ +ATMPP V ++R ++R P ++ + E I+Q V + E K L ++
Sbjct: 205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLY 264
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ +IF N ++ D L + + + +HG Q RE+ + + GS +L+
Sbjct: 265 DTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLI 324
Score = 67 (28.6 bits), Expect = 4.6e-28, Sum P(3) = 4.6e-28
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 1126 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1151
GR G++G+A++F T DD + D++Q
Sbjct: 361 GRFGRKGVAINFITDDDRRILKDIEQ 386
Score = 41 (19.5 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 196 QTVMFTATMPPAKILE 211
Q ++ +ATMPP +LE
Sbjct: 205 QVILLSATMPP-DVLE 219
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 310 (114.2 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 75/218 (34%), Positives = 115/218 (52%)
Query: 1615 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 1673
+F+AT+P +VE LARS + V IG +E ++Q +V+ SE+ K L +
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 1674 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1733
+ PV+IFV K+ A L L+ A +H +RE A++ + G K +L+ATD
Sbjct: 379 LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATD 438
Query: 1734 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
V RG+D K ++ VINYD S Y HRIGR+GRAG+ G A++F T+ D ++
Sbjct: 439 VIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANT 498
Query: 1794 MISS--PVSTCPPELLNHPDAQHKPGTVMVPKKRREEK 1829
M+SS V + L +H+P + K + +K
Sbjct: 499 MMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKADK 536
Score = 307 (113.1 bits), Expect = 5.8e-49, Sum P(2) = 5.8e-49
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 940 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 998
+F+AT+P +VE LARS + V IG +E ++Q +V+ SE+ K L +
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 999 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATD 1058
+ PV+IFV K+ A L L+ A +H +RE A++ + G K +L+ATD
Sbjct: 379 LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATD 438
Query: 1059 VAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
V RG+D K ++ VINYD S Y HRIGR+GRAG+ G A++F T+ D ++
Sbjct: 439 VIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANT 498
Query: 1119 MISS 1122
M+SS
Sbjct: 499 MMSS 502
Score = 289 (106.8 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
Identities = 76/216 (35%), Positives = 122/216 (56%)
Query: 696 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEAS--LPTE--ILEIIEKIGYAEP 751
+K L+ ERD + R+ YSI + G +P P++++ E S E IL + ++G+ EP
Sbjct: 106 KKELNRQMERD-ALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEP 164
Query: 752 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
TPIQRQAIPI L R+ A TGSGKT AF+ P+L+ K+ R + G A+I+
Sbjct: 165 TPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLI------KLKR--PSTDGIRAVIL 216
Query: 812 APTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
+P RELA Q E K G+ IR L+ L + F +L C+++I+TP RL
Sbjct: 217 SPARELAAQTAREGKKLIKGSNFHIR--LMTKPLVKTAD-FS-KLWCDVLISTPMRLKRA 272
Query: 870 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 905
++ + + L++ Y+VLDE+D++ + + +++
Sbjct: 273 IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
Score = 289 (106.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 76/216 (35%), Positives = 122/216 (56%)
Query: 1371 EKSLDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEAS--LPTE--ILEIIEKIGYAEP 1426
+K L+ ERD + R+ YSI + G +P P++++ E S E IL + ++G+ EP
Sbjct: 106 KKELNRQMERD-ALSRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEP 164
Query: 1427 TPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
TPIQRQAIPI L R+ A TGSGKT AF+ P+L+ K+ R + G A+I+
Sbjct: 165 TPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLI------KLKR--PSTDGIRAVIL 216
Query: 1487 APTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
+P RELA Q E K G+ IR L+ L + F +L C+++I+TP RL
Sbjct: 217 SPARELAAQTAREGKKLIKGSNFHIR--LMTKPLVKTAD-FS-KLWCDVLISTPMRLKRA 272
Query: 1545 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 1580
++ + + L++ Y+VLDE+D++ + + +++
Sbjct: 273 IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
Score = 233 (87.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 59/165 (35%), Positives = 95/165 (57%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ ++G+ EPTPIQRQAIPI L R+ A TGSGKT AF+ P+L+ K+ R +
Sbjct: 156 LAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLI------KLKR--PS 207
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKF--GTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G A+I++P RELA Q E K G+ IR L+ L + F +L C+++I
Sbjct: 208 TDGIRAVILSPARELAAQTAREGKKLIKGSNFHIR--LMTKPLVKTAD-FS-KLWCDVLI 263
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILE 164
+TP RL ++ + + L++ Y+VLDE+D++ + + +++
Sbjct: 264 STPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308
Score = 146 (56.5 bits), Expect = 4.7e-27, Sum P(3) = 4.7e-27
Identities = 38/118 (32%), Positives = 61/118 (51%)
Query: 246 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQ-IVYILSEQDKRKKLMEVLNRG 304
+F+AT+P +VE LARS + V IG +E ++Q +V+ SE+ K L +
Sbjct: 319 LFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAES 378
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMA 362
+ PV+IFV K+ A L L+ A +H +RE A++ + G K +L+A
Sbjct: 379 LNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIA 436
Score = 60 (26.2 bits), Expect = 4.7e-27, Sum P(3) = 4.7e-27
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1156
+GRAG+ G A++F T+ D ++ M+SS
Sbjct: 471 SGRAGRSGEAITFYTEQDVPFLRNIANTMMSS 502
Score = 39 (18.8 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 24/112 (21%), Positives = 45/112 (40%)
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGY-AEPTPIQRQ 1432
LDE + + + +K P +R+ A+LP + E+ I + A I R+
Sbjct: 288 LDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRK 347
Query: 1433 AIPIGLQNRDIIGVAETGSGKTLAFLL--------PLLVWIQSLPKIARMED 1476
+ ++ A + GK LA P+L+++QS + + D
Sbjct: 348 NTASETVKQKLV-FAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYD 398
Score = 39 (18.8 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 24/112 (21%), Positives = 45/112 (40%)
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGY-AEPTPIQRQ 757
LDE + + + +K P +R+ A+LP + E+ I + A I R+
Sbjct: 288 LDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRK 347
Query: 758 AIPIGLQNRDIIGVAETGSGKTLAFLL--------PLLVWIQSLPKIARMED 801
+ ++ A + GK LA P+L+++QS + + D
Sbjct: 348 NTASETVKQKLV-FAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYD 398
Score = 37 (18.1 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 1244 QDPEEKELNKDKEREGEAIKE 1264
++P+ KELN+ ER+ + K+
Sbjct: 103 ENPK-KELNRQMERDALSRKQ 122
Score = 37 (18.1 bits), Expect = 7.6e-16, Sum P(3) = 7.6e-16
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 320 DVLAKGLEKLGYNACTLH 337
DV+A+G++ G N C ++
Sbjct: 438 DVIARGMDFKGIN-CVIN 454
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 318 (117.0 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 77/183 (42%), Positives = 108/183 (59%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
++E L ++E ++G + PTP+Q IP LQ RD +G A+TGSGKT AF+LP+L
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL-- 61
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
Q L ED G + +++ PTRELA QI E+ G PLG++ +VVGGL Q
Sbjct: 62 -QVLS-----EDP-YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQA 114
Query: 850 FRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMG---FEPDVQKILE 905
L +VIATPGRL D L + L + ++VLDEADR+++ G F D++ ILE
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILE 174
Query: 906 YMP 908
+P
Sbjct: 175 AVP 177
Score = 318 (117.0 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 77/183 (42%), Positives = 108/183 (59%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
++E L ++E ++G + PTP+Q IP LQ RD +G A+TGSGKT AF+LP+L
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL-- 61
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
Q L ED G + +++ PTRELA QI E+ G PLG++ +VVGGL Q
Sbjct: 62 -QVLS-----EDP-YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQA 114
Query: 1525 FRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMG---FEPDVQKILE 1580
L +VIATPGRL D L + L + ++VLDEADR+++ G F D++ ILE
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILE 174
Query: 1581 YMP 1583
+P
Sbjct: 175 AVP 177
Score = 308 (113.5 bits), Expect = 9.4e-48, Sum P(2) = 9.4e-48
Identities = 74/168 (44%), Positives = 101/168 (60%)
Query: 4 KIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ 63
++G + PTP+Q IP LQ RD +G A+TGSGKT AF+LP+L Q L ED
Sbjct: 19 QMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVL---QVLS-----EDP-Y 69
Query: 64 GPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPG 123
G + +++ PTRELA QI E+ G PLG++ +VVGGL Q L +VIATPG
Sbjct: 70 GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHVVIATPG 129
Query: 124 RLIDVLEN-RYLVLNQCTYIVLDEADRMIDMG---FEPDVQKILEYMP 167
RL D L + L + ++VLDEADR+++ G F D++ ILE +P
Sbjct: 130 RLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVP 177
Score = 237 (88.5 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 936 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 995
RQT++F+AT+ + L + RP S + + ++Q ++ E K L+ ++
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 996 NRGVKK----PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1051
+ +IIF K +L L K + + LH Q QR AL K
Sbjct: 240 QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIF 299
Query: 1052 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1111
IL+ATDVA RG+DI V +VIN++ + Y HR+GRT RAG+ G++++ T+ D HL
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL 359
Query: 1112 FYDLKQ 1117
+ +++
Sbjct: 360 VHAIEE 365
Score = 237 (88.5 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 58/186 (31%), Positives = 95/186 (51%)
Query: 1611 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 1670
RQT++F+AT+ + L + RP S + + ++Q ++ E K L+ ++
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 1671 NRGVKK----PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 1726
+ +IIF K +L L K + + LH Q QR AL K
Sbjct: 240 QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIF 299
Query: 1727 DILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHL 1786
IL+ATDVA RG+DI V +VIN++ + Y HR+GRT RAG+ G++++ T+ D HL
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHL 359
Query: 1787 FYDLKQ 1792
+ +++
Sbjct: 360 VHAIEE 365
Score = 94 (38.1 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 32/125 (25%), Positives = 53/125 (42%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
RQT++F+AT+ + L + RP S + + ++Q ++ E K L+ ++
Sbjct: 180 RQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLI 239
Query: 302 NRGVKK----PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+ +IIF K +L L K + + LH Q QR AL K
Sbjct: 240 QTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIF 299
Query: 358 DILMA 362
IL+A
Sbjct: 300 KILIA 304
Score = 57 (25.1 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 1125 TGRAGKEGLAVSFCTKDDSHLFYDLKQ 1151
T RAG+ G++++ T+ D HL + +++
Sbjct: 339 TARAGRNGISITMVTQYDIHLVHAIEE 365
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 551 (199.0 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 134/318 (42%), Positives = 186/318 (58%)
Query: 1479 QGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536
+GP A+++APTRELAQQI+ +G IR + GG S+ Q L G E++IA
Sbjct: 309 EGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIA 368
Query: 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 1596
TPGRLID LENR L +CTY+VLDEADRM+DMGFEP ++KI+E ++PD
Sbjct: 369 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD------ 417
Query: 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVY 1655
RQ VM++AT P V+ LA +L + IGS+ I QIV
Sbjct: 418 --------------RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVE 463
Query: 1656 ILSEQDKRKKLMEVLNR--GVKKP------VIIFVNQK-KGADVLAKGLEKLGYNACTLH 1706
I +E +K ++L+ +LN +K +I+FV K K D+L + + GYNA ++H
Sbjct: 464 ICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDIL-QIIRAEGYNATSIH 522
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G K Q +R+ L + G +IL+ATDVA RG+D++D+ VINYD S E+Y HRIGRT
Sbjct: 523 GDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRT 582
Query: 1767 GRAGKEGLAVSFCTKDDS 1784
GR + G A +F T D++
Sbjct: 583 GRCQQLGTAYTFFTPDNA 600
Score = 551 (199.0 bits), Expect = 2.5e-47, Sum P(4) = 2.5e-47
Identities = 134/318 (42%), Positives = 186/318 (58%)
Query: 804 QGPYAIIMAPTRELAQQIEEETNKFG--TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861
+GP A+++APTRELAQQI+ +G IR + GG S+ Q L G E++IA
Sbjct: 309 EGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIA 368
Query: 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 921
TPGRLID LENR L +CTY+VLDEADRM+DMGFEP ++KI+E ++PD
Sbjct: 369 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD------ 417
Query: 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVY 980
RQ VM++AT P V+ LA +L + IGS+ I QIV
Sbjct: 418 --------------RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVE 463
Query: 981 ILSEQDKRKKLMEVLNR--GVKKP------VIIFVNQK-KGADVLAKGLEKLGYNACTLH 1031
I +E +K ++L+ +LN +K +I+FV K K D+L + + GYNA ++H
Sbjct: 464 ICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDIL-QIIRAEGYNATSIH 522
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G K Q +R+ L + G +IL+ATDVA RG+D++D+ VINYD S E+Y HRIGRT
Sbjct: 523 GDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRT 582
Query: 1092 GRAGKEGLAVSFCTKDDS 1109
GR + G A +F T D++
Sbjct: 583 GRCQQLGTAYTFFTPDNA 600
Score = 490 (177.5 bits), Expect = 8.9e-41, Sum P(4) = 8.9e-41
Identities = 100/209 (47%), Positives = 141/209 (67%)
Query: 1386 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 1445
R + IT+ G ++P PV +++E+SLP ++E +++ G+ +PT IQ Q PI L RD++G
Sbjct: 220 RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVG 279
Query: 1446 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG- 1504
+A+TGSGKTLA++LP +V I + P I R E GP A+++APTRELAQQI+ +G
Sbjct: 280 IAQTGSGKTLAYMLPAIVHIGNQPPIIRGE----GPIALVLAPTRELAQQIQSVVRDYGH 335
Query: 1505 -TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 1563
IR + GG S+ Q L G E++IATPGRLID LENR L +CTY+VLDEA
Sbjct: 336 LCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEA 395
Query: 1564 DRMIDMGFEPDVQKILEYMPVTNLKPDTE 1592
DRM+DMGFEP ++KI+E ++PD +
Sbjct: 396 DRMLDMGFEPQIRKIIE-----QIRPDRQ 419
Score = 490 (177.5 bits), Expect = 4.7e-40, Sum P(4) = 4.7e-40
Identities = 100/209 (47%), Positives = 141/209 (67%)
Query: 711 REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIG 770
R + IT+ G ++P PV +++E+SLP ++E +++ G+ +PT IQ Q PI L RD++G
Sbjct: 220 RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVG 279
Query: 771 VAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG- 829
+A+TGSGKTLA++LP +V I + P I R E GP A+++APTRELAQQI+ +G
Sbjct: 280 IAQTGSGKTLAYMLPAIVHIGNQPPIIRGE----GPIALVLAPTRELAQQIQSVVRDYGH 335
Query: 830 -TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 888
IR + GG S+ Q L G E++IATPGRLID LENR L +CTY+VLDEA
Sbjct: 336 LCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEA 395
Query: 889 DRMIDMGFEPDVQKILEYMPVTNLKPDTE 917
DRM+DMGFEP ++KI+E ++PD +
Sbjct: 396 DRMLDMGFEPQIRKIIE-----QIRPDRQ 419
Score = 419 (152.6 bits), Expect = 3.5e-45, Sum P(3) = 3.5e-45
Identities = 89/178 (50%), Positives = 120/178 (67%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++ G+ +PT IQ Q PI L RD++G+A+TGSGKTLA++LP +V I + P I R E
Sbjct: 252 MKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQPPIIRGE-- 309
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFG---TPLGIRTVLVVGGLSREEQGFRLRLGCEIV 118
GP A+++APTRELAQQI+ +G P IR + GG S+ Q L G E++
Sbjct: 310 --GPIALVLAPTRELAQQIQSVVRDYGHLCKP-EIRHTCIFGGSSKVPQARDLDRGVEVI 366
Query: 119 IATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
IATPGRLID LENR L +CTY+VLDEADRM+DMGFEP ++KI+E ++PD +
Sbjct: 367 IATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPDRQ 419
Score = 161 (61.7 bits), Expect = 3.5e-45, Sum P(3) = 3.5e-45
Identities = 46/131 (35%), Positives = 71/131 (54%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVG-KPTERIEQIVYILSEQDKRKKLMEV 300
RQ VM++AT P V+ LA +L + IGS+ I QIV I +E +K ++L+ +
Sbjct: 418 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCL 477
Query: 301 LNR--GVKKP------VIIFVNQK-KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
LN +K +I+FV K K D+L + + GYNA ++HG K Q +R+ L
Sbjct: 478 LNEISPIKNSGNNGNKIIVFVETKIKVEDIL-QIIRAEGYNATSIHGDKTQNERDSVLKD 536
Query: 352 LKGGSKDILMA 362
+ G +IL+A
Sbjct: 537 FRNGKSNILIA 547
Score = 44 (20.5 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1305 RHQVQFFGRGNIAG 1318
RH+ Q++ RGN G
Sbjct: 39 RHERQYYPRGNFGG 52
Score = 44 (20.5 bits), Expect = 7.7e-48, Sum P(4) = 7.7e-48
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 630 RHQVQFFGRGNIAG 643
RH+ Q++ RGN G
Sbjct: 39 RHERQYYPRGNFGG 52
Score = 44 (20.5 bits), Expect = 2.5e-47, Sum P(4) = 2.5e-47
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 156 EPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYM 213
EP ++ P T K + + AE +L + + V F + PA ++E M
Sbjct: 195 EPFLKDFYNIHPNTLAKSEQQVAEIRRELEITVSGNELPHPVVSFEESSLPAHVIEEM 252
Score = 42 (19.8 bits), Expect = 7.7e-48, Sum P(4) = 7.7e-48
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 997 RGVKKPVIIFVNQK--KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 1054
RG K P QK GA V A G + YNA L +E+ E+ K ++++
Sbjct: 130 RG-KNPTYAQRYQKPNNGAGV-AGGYQSNNYNAAALGMLSKEERAEIQREKAKNPGRNLV 187
Score = 42 (19.8 bits), Expect = 4.1e-47, Sum P(4) = 4.1e-47
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 303 RGVKKPVIIFVNQK--KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
RG K P QK GA V A G + YNA L +E+ E+ K ++++
Sbjct: 130 RG-KNPTYAQRYQKPNNGAGV-AGGYQSNNYNAAALGMLSKEERAEIQREKAKNPGRNLV 187
Score = 37 (18.1 bits), Expect = 7.7e-48, Sum P(4) = 7.7e-48
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 828 FGTPLGIRTVLVVGGLSREEQG 849
FG P G+ T + GL G
Sbjct: 71 FGQPYGVMTYGIQNGLGMGAAG 92
Score = 37 (18.1 bits), Expect = 2.5e-47, Sum P(4) = 2.5e-47
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 1125 TGRAGKEGLAVSFCTKDDS 1143
TGR + G A +F T D++
Sbjct: 582 TGRCQQLGTAYTFFTPDNA 600
Score = 37 (18.1 bits), Expect = 2.5e-47, Sum P(4) = 2.5e-47
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 87 FGTPLGIRTVLVVGGLSREEQG 108
FG P G+ T + GL G
Sbjct: 71 FGQPYGVMTYGIQNGLGMGAAG 92
WARNING: HSPs involving 724 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1832 1543 0.00079 125 3 11 22 0.42 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 974
No. of states in DFA: 617 (66 KB)
Total size of DFA: 552 KB (2240 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 130.27u 0.11s 130.38t Elapsed: 00:01:14
Total cpu time: 130.50u 0.11s 130.61t Elapsed: 00:01:17
Start: Thu Aug 15 11:38:19 2013 End: Thu Aug 15 11:39:36 2013
WARNINGS ISSUED: 2