RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6409
(1832 letters)
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 572 bits (1476), Expect = 0.0
Identities = 167/437 (38%), Positives = 236/437 (54%), Gaps = 32/437 (7%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDAD---------QGPYAIIMAPTRELAQQIEEETN 1501
SGKT AFLLP+L I S + Q P ++++APTRELA QI EE
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 1502 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 1561
KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 1562 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 1621
EADRM+DMGFEP +++I+E + P R T+MF+AT P
Sbjct: 183 EADRMLDMGFEPQIRRIVEQD---TMPPKGV------------------RHTMMFSATFP 221
Query: 1622 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVII 1680
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++
Sbjct: 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLV 281
Query: 1681 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740
FV KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+D
Sbjct: 282 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341
Query: 1741 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVS 1800
I +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 342 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK-Q 400
Query: 1801 TCPPELLNHPDAQHKPG 1817
P L N H G
Sbjct: 401 EVPSWLENMAYEHHYKG 417
Score = 561 bits (1448), Expect = 0.0
Identities = 162/417 (38%), Positives = 231/417 (55%), Gaps = 31/417 (7%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ G P + ++ + + I+ IE Y PTP+Q+ AIPI + RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDAD---------QGPYAIIMAPTRELAQQIEEETN 826
SGKT AFLLP+L I S + Q P ++++APTRELA QI EE
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 827 KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLD 886
KF +R +V GG +Q L GC +++ATPGRL+D++E + L+ C Y+VLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 887 EADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMP 946
EADRM+DMGFEP +++I+E + P R T+MF+AT P
Sbjct: 183 EADRMLDMGFEPQIRRIVEQD---TMPPKGV------------------RHTMMFSATFP 221
Query: 947 PAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVII 1005
++ LAR +L + +G VG +E I Q V + E DKR L+++LN G ++
Sbjct: 222 KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLV 281
Query: 1006 FVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065
FV KKGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+D
Sbjct: 282 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 341
Query: 1066 IKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISS 1122
I +V VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ +
Sbjct: 342 ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398
Score = 389 bits (1001), Expect = e-122
Identities = 128/377 (33%), Positives = 179/377 (47%), Gaps = 78/377 (20%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
IE Y PTP+Q+ AIPI + RD++ A+TGSGKT AFLLP+L I S +
Sbjct: 30 IELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89
Query: 62 D---------QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 112
Q P ++++APTRELA QI EE KF +R +V GG +Q L
Sbjct: 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE 149
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 172
GC +++ATPGRL+D++E + L+ C Y+VLDEADRM+DMGFEP +++I+E +
Sbjct: 150 RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD---TMP 206
Query: 173 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLL 232
P R T+
Sbjct: 207 PKGV------------------RHTM---------------------------------- 214
Query: 233 ANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQD 292
MF+AT P ++ LAR +L + +G VG +E I Q V + E D
Sbjct: 215 -------------MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD 261
Query: 293 KRKKLMEVLNR-GVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
KR L+++LN G ++FV KKGAD L L GY ++HG + Q RE AL+
Sbjct: 262 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321
Query: 352 LKGGSKDILMAGDRRSR 368
+ G IL+A +R
Sbjct: 322 FRSGKSPILVATAVAAR 338
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 549 bits (1417), Expect = e-180
Identities = 161/439 (36%), Positives = 240/439 (54%), Gaps = 32/439 (7%)
Query: 1371 EKSLDEMTERDWRIFR--EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTP 1428
+ F + + + G VP P++++ A L I++ + K GY PTP
Sbjct: 22 AIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTP 81
Query: 1429 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 1488
IQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P + P +I++P
Sbjct: 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL----GRPQVVIVSP 137
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
TRELA QI E KF ++ +V GG S Q + GC +VIATPGRL+D ++
Sbjct: 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197
Query: 1549 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 1608
++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------------------ 236
Query: 1609 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 1668
QT+MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E
Sbjct: 237 --HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294
Query: 1669 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
+L+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +
Sbjct: 295 ILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353
Query: 1729 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLF 1787
L+AT VA RG+DIK++ VINYDM I+DY HRIGRTGR G G A SF + D +
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
Query: 1788 YDLKQMMISSPVSTCPPEL 1806
DL +++ S T P L
Sbjct: 414 ADLVKILEGSG-QTVPDFL 431
Score = 547 bits (1413), Expect = e-179
Identities = 157/427 (36%), Positives = 236/427 (55%), Gaps = 31/427 (7%)
Query: 696 EKSLDEMTERDWRIFR--EDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTP 753
+ F + + + G VP P++++ A L I++ + K GY PTP
Sbjct: 22 AIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTP 81
Query: 754 IQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAP 813
IQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P + P +I++P
Sbjct: 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL----GRPQVVIVSP 137
Query: 814 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 873
TRELA QI E KF ++ +V GG S Q + GC +VIATPGRL+D ++
Sbjct: 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT 197
Query: 874 YLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKK 933
++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 198 FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------------------ 236
Query: 934 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLME 993
QT+MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E
Sbjct: 237 --HQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294
Query: 994 VLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
+L+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +
Sbjct: 295 ILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 353
Query: 1054 LVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLF 1112
L+AT VA RG+DIK++ VINYDM I+DY HRIGRTGR G G A SF + D +
Sbjct: 354 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413
Query: 1113 YDLKQMM 1119
DL +++
Sbjct: 414 ADLVKIL 420
Score = 382 bits (983), Expect = e-119
Identities = 116/363 (31%), Positives = 176/363 (48%), Gaps = 75/363 (20%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ K GY PTPIQ+ +IP+ RD++ A+TGSGKT AFLLP+L + P +
Sbjct: 71 VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL--- 127
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I++PTRELA QI E KF ++ +V GG S Q + GC +VIAT
Sbjct: 128 -GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D ++ ++ ++VLDEADRM+DMGF D+++I+ ++ ++P+
Sbjct: 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV---TMRPE------- 236
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
QT+
Sbjct: 237 -------------HQTL------------------------------------------- 240
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
MF+AT P ++R+A +L+ V IG VG ++Q +Y +++ KR KL+E+L
Sbjct: 241 ----MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEIL 296
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ I+FV K+GAD LA L + + ++HG + Q QRE AL K GS +L+
Sbjct: 297 SEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLI 355
Query: 362 AGD 364
A
Sbjct: 356 ATS 358
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding,
hydrolase, nucleotide-binding, RNA binding protein,
structural genomics; 1.90A {Sulfolobus tokodaii}
Length = 337
Score = 384 bits (989), Expect = e-121
Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 50/377 (13%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
+ +I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------- 53
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R
Sbjct: 54 --------ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR- 104
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
+IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS------ 158
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 974
+ T +F+AT+P + ++ + ++ +
Sbjct: 159 -------------------NRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLAN 196
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+E + D + ++ L K VI+FV + L + NA L G
Sbjct: 197 VEHKFVHVK--DDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDL 250
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310
Query: 1095 GKEGLAVSFCTKDDSHL 1111
G++G A++F +
Sbjct: 311 GRKGEAITFILNEYWLE 327
Score = 384 bits (989), Expect = e-121
Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 50/377 (13%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
+ +I + I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------- 53
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R
Sbjct: 54 --------ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR- 104
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
+IV+ATPGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 105 NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS------ 158
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 1649
+ T +F+AT+P + ++ + ++ +
Sbjct: 159 -------------------NRKITGLFSATIPEEIRKVVKDFITNYEEI---EACIGLAN 196
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+E + D + ++ L K VI+FV + L + NA L G
Sbjct: 197 VEHKFVHVK--DDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDL 250
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
Q R +++ + G D+L+ TDVA RG+DI V VIN+D + + Y HRIGRTGR
Sbjct: 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310
Query: 1770 GKEGLAVSFCTKDDSHL 1786
G++G A++F +
Sbjct: 311 GRKGEAITFILNEYWLE 327
Score = 261 bits (669), Expect = 4e-78
Identities = 77/363 (21%), Positives = 140/363 (38%), Gaps = 97/363 (26%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ T +Q + IP+ LQ ++++ A+TGSGKT A+ +P+L
Sbjct: 9 IREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL--------------- 53
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ G ++++ PTREL +Q+ G + + V GG+ + Q R+R +IV+AT
Sbjct: 54 ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVAT 112
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D+ + L+ +++DEAD M +MGF D++ IL
Sbjct: 113 PGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS-------------- 158
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
+ T +F
Sbjct: 159 -----------NRKITGLF----------------------------------------- 166
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+AT+P + ++ + ++ + +E + D + ++ L
Sbjct: 167 ------SATIPEEIRKVVKDFITNYEEI---EACIGLANVEHKFVHVK--DDWRSKVQAL 215
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
K VI+FV + L + NA L G Q R +++ + G D+L+
Sbjct: 216 RENKDKGVIVFVRTRNRVAKLVRLF----DNAIELRGDLPQSVRNRNIDAFREGEYDMLI 271
Query: 362 AGD 364
D
Sbjct: 272 TTD 274
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 383 bits (987), Expect = e-120
Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 37/384 (9%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL------- 80
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
+++ A+IM PTRELA Q + G GI ++ GG + + RL
Sbjct: 81 --EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------ 192
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-E 973
Q+++F+AT P V+ +L +P + + + T +
Sbjct: 193 -------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLK 231
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 291
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+GR
Sbjct: 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
G GLA++ +D Y ++Q
Sbjct: 352 FGHLGLAINLINWNDRFNLYKIEQ 375
Score = 383 bits (987), Expect = e-120
Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 37/384 (9%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL------- 80
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
+++ A+IM PTRELA Q + G GI ++ GG + + RL
Sbjct: 81 --EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE 138
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------ 192
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-E 1648
Q+++F+AT P V+ +L +P + + + T +
Sbjct: 193 -------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME--ELTLK 231
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 232 GITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHAR 291
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+GR
Sbjct: 292 MKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
G GLA++ +D Y ++Q
Sbjct: 352 FGHLGLAINLINWNDRFNLYKIEQ 375
Score = 258 bits (662), Expect = 3e-76
Identities = 85/364 (23%), Positives = 149/364 (40%), Gaps = 84/364 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L +++
Sbjct: 36 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL---------EKVKPK 86
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+IM PTRELA Q + G GI ++ GG + + RL I++ T
Sbjct: 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 146
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 147 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-------------- 192
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q+++F
Sbjct: 193 -----------PTHQSLLF----------------------------------------- 200
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKLMEV 300
+AT P V+ +L +P + + + T + I Q + E+ K L +
Sbjct: 201 ------SATFPLTVKEFMVKHLHKPYEINLME--ELTLKGITQYYAFVEERQKLHCLNTL 252
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
++ IIF N ++LAK + LGY+ H Q++R + + G L
Sbjct: 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 361 MAGD 364
+ D
Sbjct: 313 VCSD 316
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 381 bits (981), Expect = e-119
Identities = 127/389 (32%), Positives = 192/389 (49%), Gaps = 48/389 (12%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSL 793
L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV--- 69
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+ + G AII+ PTRELA Q+ +E ++ + GG + Q L+
Sbjct: 70 -------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 123 -NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN----- 176
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 973
K ++ ++F+ATMP + LA+ Y+ + + K
Sbjct: 177 --------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINA 212
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTL 1030
IEQ ++E ++ E L R +K ++F K+ LA L +G+ A +
Sbjct: 213 NIEQSYVEVNENER----FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 268
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1090
HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGR
Sbjct: 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
Query: 1091 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
TGRAGK+G A+S + + +++ M
Sbjct: 329 TGRAGKKGKAISIINRREYKKLRYIERAM 357
Score = 381 bits (981), Expect = e-119
Identities = 127/389 (32%), Positives = 192/389 (49%), Gaps = 48/389 (12%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSL 1468
L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV--- 69
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+ + G AII+ PTRELA Q+ +E ++ + GG + Q L+
Sbjct: 70 -------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 123 -NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN----- 176
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTE 1648
K ++ ++F+ATMP + LA+ Y+ + + K
Sbjct: 177 --------------------KDKRILLFSATMPREILNLAKKYMGDYSFIKA----KINA 212
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTL 1705
IEQ ++E ++ E L R +K ++F K+ LA L +G+ A +
Sbjct: 213 NIEQSYVEVNENER----FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 268
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGR 1765
HG Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGR
Sbjct: 269 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 328
Query: 1766 TGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
TGRAGK+G A+S + + +++ M
Sbjct: 329 TGRAGKKGKAISIINRREYKKLRYIERAM 357
Score = 259 bits (664), Expect = 6e-77
Identities = 96/367 (26%), Positives = 148/367 (40%), Gaps = 95/367 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +PL+ + +
Sbjct: 21 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV----------N 70
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G AII+ PTRELA Q+ +E ++ + GG + Q L+ IV+
Sbjct: 71 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVG 129
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 130 TPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------- 176
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
K ++ ++F
Sbjct: 177 ------------KDKRILLF---------------------------------------- 184
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
+ATMP + LA+ Y+ + + K IEQ ++E ++ E
Sbjct: 185 -------SATMPREILNLAKKYMGDYSFIKA----KINANIEQSYVEVNENER----FEA 229
Query: 301 LNRGVKKP---VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
L R +K ++F K+ LA L +G+ A +HG Q QRE + K
Sbjct: 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 289
Query: 358 DILMAGD 364
IL+A D
Sbjct: 290 RILIATD 296
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 376 bits (967), Expect = e-119
Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV 62
Query: 762 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 821
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQV 118
Query: 822 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 881
++ ++ +++ + GG + Q L G EI IATPGRLID LE L + T
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178
Query: 882 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 941
Y+VLDEADRM+DMGFEP ++KI++ + PD RQT+M+
Sbjct: 179 YLVLDEADRMLDMGFEPQIRKIVDQIR-----PD--------------------RQTLMW 213
Query: 942 TATMPPAVERLARSYLRRPATVYIGSV 968
+AT P V +LA +L+ + IG++
Sbjct: 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240
Score = 376 bits (967), Expect = e-119
Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 29/267 (10%)
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
T ++ +R IT++G P PV N+ EA+ P ++++I + + EPT IQ Q P+
Sbjct: 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPV 62
Query: 1437 GLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQI 1496
L D++GVA+TGSGKTL++LLP +V I P + R + GP +++APTRELAQQ+
Sbjct: 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD----GPICLVLAPTRELAQQV 118
Query: 1497 EEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCT 1556
++ ++ +++ + GG + Q L G EI IATPGRLID LE L + T
Sbjct: 119 QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTT 178
Query: 1557 YIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 1616
Y+VLDEADRM+DMGFEP ++KI++ + PD RQT+M+
Sbjct: 179 YLVLDEADRMLDMGFEPQIRKIVDQIR-----PD--------------------RQTLMW 213
Query: 1617 TATMPPAVERLARSYLRRPATVYIGSV 1643
+AT P V +LA +L+ + IG++
Sbjct: 214 SATWPKEVRQLAEDFLKDYIHINIGAL 240
Score = 303 bits (779), Expect = 3e-94
Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 76/274 (27%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+I + + EPT IQ Q P+ L D++GVA+TGSGKTL++LLP +V I P + R +
Sbjct: 43 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGD- 101
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
GP +++APTRELAQQ+++ ++ +++ + GG + Q L G EI IA
Sbjct: 102 ---GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 158
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGRLID LE L + TY+VLDEADRM+DMGFEP ++KI++ + PD
Sbjct: 159 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PD------ 207
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
RQT+
Sbjct: 208 --------------RQTL------------------------------------------ 211
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSV 274
M++AT P V +LA +L+ + IG++
Sbjct: 212 -----MWSATWPKEVRQLAEDFLKDYIHINIGAL 240
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET: ANP;
2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 378 bits (974), Expect = e-118
Identities = 109/398 (27%), Positives = 197/398 (49%), Gaps = 41/398 (10%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
+ +L ++ + A+I+APTRELA QI++ G + ++ +GG
Sbjct: 93 ISVL---------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 143
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 144 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
Y+P Q V+ +AT+P + + ++ P +
Sbjct: 204 YRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDPIRI 238
Query: 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1019
+ E I+Q ++ E+++ K + L +IF N K+ D L +
Sbjct: 239 LVKRDELTLEGIKQF-FVAVEREEWK--FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 295
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
+ + + ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+
Sbjct: 296 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355
Query: 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ E Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
Score = 378 bits (974), Expect = e-118
Identities = 109/398 (27%), Positives = 197/398 (49%), Gaps = 41/398 (10%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G+GKT F
Sbjct: 33 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
+ +L ++ + A+I+APTRELA QI++ G + ++ +GG
Sbjct: 93 ISVL---------QCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 143
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ E +L G +V TPGR+ D++ R L +VLDEAD M++ GF+ + +
Sbjct: 144 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
Y+P Q V+ +AT+P + + ++ P +
Sbjct: 204 YRYLP-------------------------PATQVVLISATLPHEILEMTNKFMTDPIRI 238
Query: 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1694
+ E I+Q ++ E+++ K + L +IF N K+ D L +
Sbjct: 239 LVKRDELTLEGIKQF-FVAVEREEWK--FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEK 295
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
+ + + ++HG Q++RE + + G+ +L++TDV RG+D+ VS++INYD+
Sbjct: 296 MREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN 355
Query: 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ E Y HRIGR+GR G++G+A++F DD + D++Q
Sbjct: 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 393
Score = 251 bits (644), Expect = 1e-73
Identities = 78/367 (21%), Positives = 148/367 (40%), Gaps = 88/367 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F + +L ++
Sbjct: 52 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVL---------QCLDIQ 102
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+I+APTRELA QI++ G + ++ +GG + E +L G +V T
Sbjct: 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 162
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P
Sbjct: 163 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------- 208
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+
Sbjct: 209 -----------PATQVVLI----------------------------------------- 216
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
+AT+P + + ++ P + + E I+Q ++ E+++ K + L
Sbjct: 217 ------SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF-FVAVEREEWK--FDTL 267
Query: 302 NR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+IF N K+ D L + + + + ++HG Q++RE + + G+
Sbjct: 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGAS 327
Query: 358 DILMAGD 364
+L++ D
Sbjct: 328 RVLISTD 334
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 376 bits (967), Expect = e-117
Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 42/397 (10%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 78 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 128
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 129 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+P Q V+ +ATMP V + ++R P +
Sbjct: 188 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 222
Query: 965 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGL 1020
+ E I+Q Y+ E+++ K E L +IF N ++ + L L
Sbjct: 223 VKKDELTLEGIKQF-YVNVEEEEYK--YECLTDLYDSISVTQAVIFCNTRRKVEELTTKL 279
Query: 1021 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1080
+ ++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ +
Sbjct: 280 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 339
Query: 1081 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
E+Y HRIGR GR G++G+A++F T +D +L++
Sbjct: 340 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376
Score = 376 bits (967), Expect = e-117
Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 42/397 (10%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 78 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 128
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 129 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+P Q V+ +ATMP V + ++R P +
Sbjct: 188 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 222
Query: 1640 IGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGL 1695
+ E I+Q Y+ E+++ K E L +IF N ++ + L L
Sbjct: 223 VKKDELTLEGIKQF-YVNVEEEEYK--YECLTDLYDSISVTQAVIFCNTRRKVEELTTKL 279
Query: 1696 EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS 1755
+ ++ Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ +
Sbjct: 280 RNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPAN 339
Query: 1756 IEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
E+Y HRIGR GR G++G+A++F T +D +L++
Sbjct: 340 KENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376
Score = 248 bits (635), Expect = 1e-72
Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 89/367 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L R++ +
Sbjct: 36 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL---------QRIDTS 86
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 87 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 145
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 146 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 191
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+ +A
Sbjct: 192 -----------PTTQVVLLSA--------------------------------------- 201
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
TMP V + ++R P + + E I+Q Y+ E+++ K E L
Sbjct: 202 --------TMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQF-YVNVEEEEYK--YECL 250
Query: 302 NR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+IF N ++ + L L + ++ Q++R+ + + GS
Sbjct: 251 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 310
Query: 358 DILMAGD 364
IL++ D
Sbjct: 311 RILISTD 317
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase,
DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET:
ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A*
3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 381 bits (980), Expect = e-117
Identities = 131/497 (26%), Positives = 208/497 (41%), Gaps = 54/497 (10%)
Query: 1338 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 1397
+R R + ++ D+ H+ + + ++ ++ ++
Sbjct: 17 NQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSL--- 73
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTL 1455
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT
Sbjct: 74 -------LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTF 126
Query: 1456 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRT 1511
AFL+P+ Q L A+I+APTR+LA QIE E K
Sbjct: 127 AFLIPI---FQHLINTKFDSQ--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 181
Query: 1512 VLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDM 1569
V +VGG ++ +L IVIATPGRLIDVLE Y VLDEADR++++
Sbjct: 182 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 241
Query: 1570 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
GF D++ I + N K +T++F+AT+ V++LA
Sbjct: 242 GFRDDLETISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLAN 283
Query: 1630 SYLRRPATVYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVI 1679
+ + + +++ +V K ERI+Q V I + ++ R I
Sbjct: 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343
Query: 1680 IFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736
IF K L L+ K HG Q +R + K ILV TDV
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMIS 1796
RG+D +V V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNI 463
Query: 1797 SPVSTCPPELLNHPDAQ 1813
E ++
Sbjct: 464 VIAKQEKYEPSEEIKSE 480
Score = 381 bits (979), Expect = e-117
Identities = 130/476 (27%), Positives = 205/476 (43%), Gaps = 54/476 (11%)
Query: 663 KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGK 722
+R R + ++ D+ H+ + + ++ ++ ++
Sbjct: 17 NQRNNNSNRYRNSRFNSRPRTRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSL--- 73
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTL 780
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT
Sbjct: 74 -------LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTF 126
Query: 781 AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRT 836
AFL+P+ Q L A+I+APTR+LA QIE E K
Sbjct: 127 AFLIPI---FQHLINTKFDSQ--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 181
Query: 837 VLVVGGLSREEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDM 894
V +VGG ++ +L IVIATPGRLIDVLE Y VLDEADR++++
Sbjct: 182 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 241
Query: 895 GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
GF D++ I + N K +T++F+AT+ V++LA
Sbjct: 242 GFRDDLETISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLAN 283
Query: 955 SYLRRPATVYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVI 1004
+ + + +++ +V K ERI+Q V I + ++ R I
Sbjct: 284 NIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAI 343
Query: 1005 IFVNQKKGADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
IF K L L+ K HG Q +R + K ILV TDV
Sbjct: 344 IFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
RG+D +V V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 404 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 459
Score = 260 bits (667), Expect = 4e-75
Identities = 97/384 (25%), Positives = 146/384 (38%), Gaps = 91/384 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+ Q L
Sbjct: 87 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI---FQHLINTKFDS 143
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLG 114
A+I+APTR+LA QIE E K V +VGG ++ +L
Sbjct: 144 Q--YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201
Query: 115 CEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 173
IVIATPGRLIDVLE Y VLDEADR++++GF D++ I + N K
Sbjct: 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261
Query: 174 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLA 233
+T++F
Sbjct: 262 ADN------------------IKTLLF--------------------------------- 270
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT----ERIEQIVYILS 289
+AT+ V++LA + + + +++ +V K ERI+Q V I
Sbjct: 271 --------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 316
Query: 290 EQDKRKKLM------EVLNRGVKKPVIIFVNQKKGADVLAKGLE---KLGYNACTLHGGK 340
+ ++ R IIF K L L+ K HG
Sbjct: 317 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 376
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +R + K IL+ D
Sbjct: 377 TQNKRTSLVKRFKKDESGILVCTD 400
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 374 bits (963), Expect = e-116
Identities = 113/398 (28%), Positives = 201/398 (50%), Gaps = 42/398 (10%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 97 SIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 147
Query: 845 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I
Sbjct: 148 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 208 FQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPIRI 242
Query: 964 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1019
+ E I Q YI E+++ K ++ L +IF+N ++ D L +
Sbjct: 243 LVKKEELTLEGIRQF-YINVEREEWK--LDTLCDLYETLTITQAVIFINTRRKVDWLTEK 299
Query: 1020 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1079
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 300 MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359
Query: 1080 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397
Score = 374 bits (963), Expect = e-116
Identities = 113/398 (28%), Positives = 201/398 (50%), Gaps = 42/398 (10%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 97 SIL---------QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 147
Query: 1520 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ + I
Sbjct: 148 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 207
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 208 FQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPIRI 242
Query: 1639 YIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKG 1694
+ E I Q YI E+++ K ++ L +IF+N ++ D L +
Sbjct: 243 LVKKEELTLEGIRQF-YINVEREEWK--LDTLCDLYETLTITQAVIFINTRRKVDWLTEK 299
Query: 1695 LEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAK 1754
+ + +HG Q++R++ + + GS +L+ TD+ RGID++ VS+VINYD+
Sbjct: 300 MHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 359
Query: 1755 SIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ E+Y HRIGR GR G++G+A++ T++D D++
Sbjct: 360 NRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 397
Score = 246 bits (630), Expect = 7e-72
Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 89/368 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E
Sbjct: 55 IYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL---------QQIELD 105
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL-GCEIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L++ I++
Sbjct: 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 165
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 166 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------- 212
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
Q V+ +A
Sbjct: 213 ------------SNTQVVLLSA-------------------------------------- 222
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
TMP V + + ++R P + + E I Q YI E+++ K ++
Sbjct: 223 ---------TMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF-YINVEREEWK--LDT 270
Query: 301 LNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 356
L +IF+N ++ D L + + + +HG Q++R++ + + GS
Sbjct: 271 LCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS 330
Query: 357 KDILMAGD 364
+L+ D
Sbjct: 331 SRVLITTD 338
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 373 bits (959), Expect = e-114
Identities = 144/581 (24%), Positives = 230/581 (39%), Gaps = 70/581 (12%)
Query: 731 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLV 788
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+
Sbjct: 24 EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 83
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLS 844
+ + ++ A+I+APTR+LA QIE E K V +VGG
Sbjct: 84 HLINTKFDSQ-----YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 138
Query: 845 REEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQK 902
++ +L IVIATPGRLIDVLE Y VLDEADR++++GF D++
Sbjct: 139 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
I + N K +T++F+AT+ V++LA + + +
Sbjct: 199 ISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 963 VYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVIIFVNQKKG 1012
+++ +V K ERI+Q V I + ++ R IIF K
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 1013 ADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
L L+ K HG Q +R + K ILV TDV RG+D +V
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ-----MMISSPV 1124
V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+ +
Sbjct: 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420
Query: 1125 TGRAGKEGLAVSFCTKDD----------------SHLFYDLKQMMISSPVSTCPPELLNH 1168
+ + T++ Y + I +++ LLN
Sbjct: 421 EPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLND 480
Query: 1169 PDAQ---HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSA 1225
P + + + R ++ R SRD + S + ++
Sbjct: 481 PQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRGNKNYNN 540
Query: 1226 CSLPRSHKSSSLLSRYSEQDPEEKELNKDKEREGEAIKERY 1266
S R + R S + + DK Y
Sbjct: 541 RSQNRDYDDEP--FRRSNNNRRSFSRSNDKNNYSSRNSNIY 579
Score = 371 bits (954), Expect = e-113
Identities = 126/443 (28%), Positives = 195/443 (44%), Gaps = 44/443 (9%)
Query: 1406 KEASLPTEILEIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLV 1463
+E L EI + I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+
Sbjct: 24 EEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQ 83
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLS 1519
+ + ++ A+I+APTR+LA QIE E K V +VGG
Sbjct: 84 HLINTKFDSQ-----YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 138
Query: 1520 REEQGFRL-RLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQK 1577
++ +L IVIATPGRLIDVLE Y VLDEADR++++GF D++
Sbjct: 139 FRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
I + N K +T++F+AT+ V++LA + + +
Sbjct: 199 ISGILNEKNSKSADN------------------IKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 1638 VYIGSVGKPT----ERIEQIVYILSEQDKRKKLM------EVLNRGVKKPVIIFVNQKKG 1687
+++ +V K ERI+Q V I + ++ R IIF K
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 1688 ADVLAKGLE---KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
L L+ K HG Q +R + K ILV TDV RG+D +V
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNV 360
Query: 1745 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPP 1804
V+ + + +Y HRIGRT R+GKEG +V F KD+ +L+
Sbjct: 361 HEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKY 420
Query: 1805 ELLNHPDAQHKPGTVMVPKKRRE 1827
E ++ P+ +
Sbjct: 421 EPSEEIKSEVLEAVTEEPEDISD 443
Score = 256 bits (656), Expect = 1e-73
Identities = 95/384 (24%), Positives = 148/384 (38%), Gaps = 91/384 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I ++ + TP+Q++ I L ++ D+I A+TG+GKT AFL+P+ + + ++
Sbjct: 36 ITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-- 93
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGT----PLGIRTVLVVGGLSREEQGFRL-RLG 114
A+I+APTR+LA QIE E K V +VGG ++ +L
Sbjct: 94 ---YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 115 CEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 173
IVIATPGRLIDVLE Y VLDEADR++++GF D++ I + N K
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210
Query: 174 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLA 233
+T++F
Sbjct: 211 ADN------------------IKTLLF--------------------------------- 219
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT----ERIEQIVYILS 289
+AT+ V++LA + + + +++ +V K ERI+Q V I
Sbjct: 220 --------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 265
Query: 290 EQDKRKKLM------EVLNRGVKKPVIIFVNQKKGADVLAKGLE---KLGYNACTLHGGK 340
+ ++ R IIF K L L+ K HG
Sbjct: 266 KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKI 325
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +R + K IL+ D
Sbjct: 326 TQNKRTSLVKRFKKDESGILVCTD 349
Score = 30.9 bits (70), Expect = 5.0
Identities = 21/170 (12%), Positives = 46/170 (27%), Gaps = 7/170 (4%)
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
E + ++ + E E + + + E ++++
Sbjct: 407 EDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRI 466
Query: 499 EEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDA 558
E S L + + + +R K+ R + E S R+ +
Sbjct: 467 LPEIASTYGVLLNDPQLKIPVSRR------FLDKLGLSRSPIGKAMFEIRDYSSRDGNNK 520
Query: 559 RLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRK 608
D + + K N + E + +R R ND+
Sbjct: 521 SYDYDDDSEISFRGNKNYNNRSQNRDYD-DEPFRRSNNNRRSFSRSNDKN 569
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 362 bits (931), Expect = e-112
Identities = 111/394 (28%), Positives = 197/394 (50%), Gaps = 39/394 (9%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL- 67
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 847
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 --------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 848 QGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILE 905
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179
Query: 906 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 180 MTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 966 GSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1024
K T ++Q L + +K +KL ++L+ V+IFV + LA+ L +
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 1025 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1084
+ A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 1085 THRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368
Score = 362 bits (931), Expect = e-112
Identities = 111/394 (28%), Positives = 197/394 (50%), Gaps = 39/394 (9%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL- 67
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 1522
++E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 68 --------QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK 119
Query: 1523 QGFRLRLGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILE 1580
L+ C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 120 DEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179
Query: 1581 YMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 180 MTP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 1641 GSVGKPT-ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLG 1699
K T ++Q L + +K +KL ++L+ V+IFV + LA+ L +
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 1700 YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDY 1759
+ A +H G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 1760 THRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
HR+ R GR G +GLA++F + ++D+ + D++
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368
Score = 242 bits (619), Expect = 1e-70
Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 85/367 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 23 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 73
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCE-IVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 133
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 134 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 182
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
+Q +MF
Sbjct: 183 --------------HEKQVMMF-------------------------------------- 190
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT-ERIEQIVYILSEQDKRKKL 297
+AT+ + + R +++ P +++ K T ++Q L + +K +KL
Sbjct: 191 ---------SATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKL 241
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
++L+ V+IFV + LA+ L + + A +H G QE+R K +
Sbjct: 242 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 301
Query: 358 DILMAGD 364
IL+A +
Sbjct: 302 RILVATN 308
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 356 bits (917), Expect = e-109
Identities = 107/378 (28%), Positives = 181/378 (47%), Gaps = 55/378 (14%)
Query: 754 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 811
IQ +A+P+ L N R++IG +++G+GKT AF L +L +R++ + P AI +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML---------SRVDASVPKPQAICL 195
Query: 812 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 871
AP+RELA+QI + + G ++T + ++ +IVI TPG ++D+++
Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKD----SVPKGAKIDAQIVIGTPGTVMDLMK 251
Query: 872 NRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 930
R L VLDEAD M+D G +I +P
Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP---------------------- 289
Query: 931 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+ Q V+F+AT VE+ A + + + + E I+Q+ Y+ + ++ K
Sbjct: 290 ---RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL-YMDCQSEEHK- 344
Query: 991 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1046
VL G+ IIF +K A+ +A+ + G+ L G QR+ ++S
Sbjct: 345 -YNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSF 403
Query: 1047 KGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLA 1100
+ G+ +LV T+V RGID+ V++V+NYDM + Y HRIGRTGR G+ G++
Sbjct: 404 RVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 463
Query: 1101 VSFCT-KDDSHLFYDLKQ 1117
++F K +++
Sbjct: 464 INFVHDKKSWEEMNAIQE 481
Score = 356 bits (917), Expect = e-109
Identities = 107/378 (28%), Positives = 181/378 (47%), Gaps = 55/378 (14%)
Query: 1429 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 1486
IQ +A+P+ L N R++IG +++G+GKT AF L +L +R++ + P AI +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML---------SRVDASVPKPQAICL 195
Query: 1487 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 1546
AP+RELA+QI + + G ++T + ++ +IVI TPG ++D+++
Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKD----SVPKGAKIDAQIVIGTPGTVMDLMK 251
Query: 1547 NRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 1605
R L VLDEAD M+D G +I +P
Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP---------------------- 289
Query: 1606 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+ Q V+F+AT VE+ A + + + + E I+Q+ Y+ + ++ K
Sbjct: 290 ---RNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL-YMDCQSEEHK- 344
Query: 1666 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 1721
VL G+ IIF +K A+ +A+ + G+ L G QR+ ++S
Sbjct: 345 -YNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSF 403
Query: 1722 KGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLA 1775
+ G+ +LV T+V RGID+ V++V+NYDM + Y HRIGRTGR G+ G++
Sbjct: 404 RVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 463
Query: 1776 VSFCT-KDDSHLFYDLKQ 1792
++F K +++
Sbjct: 464 INFVHDKKSWEEMNAIQE 481
Score = 237 bits (607), Expect = 1e-67
Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 95/359 (26%)
Query: 13 IQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM 70
IQ +A+P+ L N R++IG +++G+GKT AF L +L +R++ + P AI +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML---------SRVDASVPKPQAICL 195
Query: 71 APTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 130
AP+RELA+QI + + G ++T + ++ +IVI TPG ++D+++
Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKD----SVPKGAKIDAQIVIGTPGTVMDLMK 251
Query: 131 NRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYN 189
R L VLDEAD M+D G +I +P
Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP---------------------- 289
Query: 190 SKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 249
+ Q V+F +A
Sbjct: 290 ---RNTQIVLF-----------------------------------------------SA 299
Query: 250 TMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKK 307
T VE+ A + + + + E I+Q+ Y+ + ++ K VL G+
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL-YMDCQSEEHK--YNVLVELYGLLT 356
Query: 308 P--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAGD 364
IIF +K A+ +A+ + G+ L G QR+ ++S + G+ +L+ +
Sbjct: 357 IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN 415
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 337 bits (868), Expect = e-106
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 30/254 (11%)
Query: 713 DYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 771
D + + +P P +K+A ++L+ I ++G +PTPIQ QA PI LQ D+I V
Sbjct: 4 DDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVV 63
Query: 772 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 831
A+TG+GKTL++L+P + + S P + GP +++ PTRELA +E E +K+
Sbjct: 64 AQTGTGKTLSYLMPGFIHLDSQPISREQRN---GPGMLVLTPTRELALHVEAECSKYSY- 119
Query: 832 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 891
G++++ + GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M
Sbjct: 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179
Query: 892 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 951
+DM FEP ++KIL + PD RQTVM +AT P V +
Sbjct: 180 LDMEFEPQIRKILLDVR-----PD--------------------RQTVMTSATWPDTVRQ 214
Query: 952 LARSYLRRPATVYI 965
LA SYL+ P VY+
Sbjct: 215 LALSYLKDPMIVYV 228
Score = 337 bits (868), Expect = e-106
Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 30/254 (11%)
Query: 1388 DYSITIKGGKVPDPVRNWKEA-SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGV 1446
D + + +P P +K+A ++L+ I ++G +PTPIQ QA PI LQ D+I V
Sbjct: 4 DDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVV 63
Query: 1447 AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTP 1506
A+TG+GKTL++L+P + + S P + GP +++ PTRELA +E E +K+
Sbjct: 64 AQTGTGKTLSYLMPGFIHLDSQPISREQRN---GPGMLVLTPTRELALHVEAECSKYSY- 119
Query: 1507 LGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRM 1566
G++++ + GG +R Q + G +I+IATPGRL D+ N + L TY+V+DEAD+M
Sbjct: 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179
Query: 1567 IDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER 1626
+DM FEP ++KIL + PD RQTVM +AT P V +
Sbjct: 180 LDMEFEPQIRKILLDVR-----PD--------------------RQTVMTSATWPDTVRQ 214
Query: 1627 LARSYLRRPATVYI 1640
LA SYL+ P VY+
Sbjct: 215 LALSYLKDPMIVYV 228
Score = 291 bits (748), Expect = 2e-90
Identities = 90/270 (33%), Positives = 130/270 (48%), Gaps = 76/270 (28%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G +PTPIQ QA PI LQ D+I VA+TG+GKTL++L+P + + S P +
Sbjct: 35 IIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN- 93
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
GP +++ PTRELA +E E +K+ G++++ + GG +R Q + G +I+IAT
Sbjct: 94 --GPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL D+ N + L TY+V+DEAD+M+DM FEP ++KIL + PD
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR-----PD------- 198
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQTV
Sbjct: 199 -------------RQTV------------------------------------------- 202
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
M +AT P V +LA SYL+ P VY+
Sbjct: 203 ----MTSATWPDTVRQLALSYLKDPMIVYV 228
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 344 bits (884), Expect = e-106
Identities = 118/415 (28%), Positives = 203/415 (48%), Gaps = 49/415 (11%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 64 TML---------TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-- 112
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 1578
++ ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 113 --SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 1639 YIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
+ + + I+Q+ + +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1698 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM----- 1752
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD+
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1753 -AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQMMISSPVSTCPPE 1805
Y HRIGRTGR G++G+A+SF K+ ++ +++ ++ P +
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTD 380
Score = 344 bits (884), Expect = e-106
Identities = 117/393 (29%), Positives = 194/393 (49%), Gaps = 48/393 (12%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
+++ E L E+L+ I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L
Sbjct: 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSL 63
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L R+ D P AI +AP+RELA+Q E + G I + L+V
Sbjct: 64 TML---------TRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD-- 112
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKI 903
++ ++++ TPG ++D++ + + L + VLDEAD M+D G ++
Sbjct: 113 --SFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 170
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
++P K Q V+F+AT AV + A+ + T+
Sbjct: 171 KRFLP-------------------------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205
Query: 964 YIGSVGKPTERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
+ + + I+Q+ + +E DK L E+ IIFV KK A+VL L+
Sbjct: 206 ELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKS 265
Query: 1023 LGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM----- 1077
G+ LHG ++R+ ++ + G +L+ T+V RGIDI VSMV+NYD+
Sbjct: 266 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLAN 325
Query: 1078 -AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
Y HRIGRTGR G++G+A+SF +S
Sbjct: 326 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358
Score = 226 bits (579), Expect = 2e-65
Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 89/367 (24%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
I + + +P+ IQ +A+P+ L N R++I +++G+GKT AF L +L R+
Sbjct: 20 IYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------TRVN 70
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
D P AI +AP+RELA+Q E + G I + L+V ++ ++++
Sbjct: 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPD----SFEKNKQINAQVIV 126
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDM-GFEPDVQKILEYMPVTNLKPDTEDA 178
TPG ++D++ + + L + VLDEAD M+D G ++ ++P
Sbjct: 127 GTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP----------- 175
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSK 238
K Q V+F+A
Sbjct: 176 --------------KDTQLVLFSA------------------------------------ 185
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQI-VYILSEQDKRKKL 297
T AV + A+ + T+ + + + I+Q+ + +E DK L
Sbjct: 186 -----------TFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVL 234
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
E+ IIFV KK A+VL L+ G+ LHG ++R+ ++ + G
Sbjct: 235 TELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRS 294
Query: 358 DILMAGD 364
+L+ +
Sbjct: 295 KVLITTN 301
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 338 bits (869), Expect = e-104
Identities = 111/407 (27%), Positives = 192/407 (47%), Gaps = 56/407 (13%)
Query: 727 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 784
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGL 843
+L +++E A++ P + ++PT ELA Q + + G ++ V G
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQ 901
E ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961
+I +P + Q ++F+AT +V + A+ + P
Sbjct: 192 RIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPDPN 226
Query: 962 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLA 1017
+ + + + I+Q Y+L K + L G +IF + +K A LA
Sbjct: 227 VIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCNLYGAITIAQAMIFCHTRKTASWLA 283
Query: 1018 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343
Query: 1078 ------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
E Y HRIGRTGR GK GLAV+ K ++ +++
Sbjct: 344 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390
Score = 338 bits (869), Expect = e-104
Identities = 111/407 (27%), Positives = 192/407 (47%), Gaps = 56/407 (13%)
Query: 1402 VRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLL 1459
V++++E L ++L+ + +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGL 1518
+L +++E A++ P + ++PT ELA Q + + G ++ V G
Sbjct: 84 AML---------SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQ 1576
E ++ +IVI TPG ++D +++ + VLDEAD MI G +
Sbjct: 135 KLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636
+I +P + Q ++F+AT +V + A+ + P
Sbjct: 192 RIQRMLP-------------------------RNCQMLLFSATFEDSVWKFAQKVVPDPN 226
Query: 1637 TVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLA 1692
+ + + + I+Q Y+L K + L G +IF + +K A LA
Sbjct: 227 VIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCNLYGAITIAQAMIFCHTRKTASWLA 283
Query: 1693 KGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
L K G+ L G EQR + + G + +LV T+V RGID++ VS+VIN+D+
Sbjct: 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDL 343
Query: 1753 ------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
E Y HRIGRTGR GK GLAV+ K ++ +++
Sbjct: 344 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQE 390
Score = 218 bits (559), Expect = 2e-62
Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 96/372 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 40 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 90
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 147
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 148 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 198
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
+ Q ++F+A
Sbjct: 199 ----------------RNCQMLLFSA---------------------------------- 208
Query: 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
T +V + A+ + P + + + + I+Q Y+L K
Sbjct: 209 -------------TFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK- 253
Query: 297 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
+ L G +IF + +K A LA L K G+ L G EQR +
Sbjct: 254 -FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312
Query: 353 KGGSKDILMAGD 364
+ G + +L+ +
Sbjct: 313 REGKEKVLVTTN 324
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 335 bits (861), Expect = e-103
Identities = 67/451 (14%), Positives = 137/451 (30%), Gaps = 83/451 (18%)
Query: 1413 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 1472
+ +K + T QR +Q + VA TG GKT ++ L
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL---------- 58
Query: 1473 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL--- 1529
A +G + ++ PT L +Q E K ++ + +EE+ +
Sbjct: 59 --WLARKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEE 115
Query: 1530 -GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
I++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 116 DDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP----- 168
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS------------------ 1630
+ F+ + ++
Sbjct: 169 --------------------EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGI 208
Query: 1631 ---YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1687
R +G + I + ++K +L+E+ G ++IF ++
Sbjct: 209 RPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDG----ILIFAQTEEE 264
Query: 1688 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV----AGRGIDIKD 1743
L + L++ +N + E K G +IL+ RG+D+ +
Sbjct: 265 GKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 1744 -VSMVINYDM--AKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDDSHLFYDLKQMMISSP 1798
+ VI + + Y GR+ R L VS ++D +F LK ++
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIA 379
Query: 1799 VSTCPPELLNHPDAQHKPGTVMVPKKRREEK 1829
E + + RE
Sbjct: 380 EEEIIEEAEANWKELVHEVEESRRRSERELT 410
Score = 332 bits (853), Expect = e-102
Identities = 64/416 (15%), Positives = 131/416 (31%), Gaps = 83/416 (19%)
Query: 738 EILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIA 797
+ +K + T QR +Q + VA TG GKT ++ L
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL---------- 58
Query: 798 RMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL--- 854
A +G + ++ PT L +Q E K ++ + +EE+ +
Sbjct: 59 --WLARKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEE 115
Query: 855 -GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
I++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 116 DDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP----- 168
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS------------------ 955
+ F+ + ++
Sbjct: 169 --------------------EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGI 208
Query: 956 ---YLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKG 1012
R +G + I + ++K +L+E+ G ++IF ++
Sbjct: 209 RPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDG----ILIFAQTEEE 264
Query: 1013 ADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV----AGRGIDIKD 1068
L + L++ +N + E K G +IL+ RG+D+ +
Sbjct: 265 GKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPE 319
Query: 1069 -VSMVINYDM--AKSIEDYTHRIGRTGRAGKEGL--AVSFCTKDDSHLFYDLKQMM 1119
+ VI + + Y GR+ R L VS ++D +F LK +
Sbjct: 320 RIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRL 375
Score = 271 bits (696), Expect = 1e-80
Identities = 61/474 (12%), Positives = 127/474 (26%), Gaps = 103/474 (21%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+K + T QR +Q + VA TG GKT ++ L A
Sbjct: 14 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL------------WLA 61
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL----GCEI 117
+G + ++ PT L +Q E K ++ + +EE+ + I
Sbjct: 62 RKGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 177
++ + + E L + ++ +D+ D ++ D ++ +P
Sbjct: 121 LVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP---------- 168
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNS 237
+ F+ KI E
Sbjct: 169 ---------------EEIIRKAFSTIKQG-KIYE-------------------------R 187
Query: 238 KKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKL 297
K + ++ ++ + R +G + I + ++K +L
Sbjct: 188 PKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVEL 247
Query: 298 MEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSK 357
+E+ G ++IF ++ L + L++ +N + E K G
Sbjct: 248 LEIFRDG----ILIFAQTEEEGKELYEYLKRFKFNVGETWS-----EFEKNFEDFKVGKI 298
Query: 358 DILMAGD-------R-----------------RSRSRSPPRKRRSRSRERDYDRVRERDT 393
+IL+ R + RS + + +
Sbjct: 299 NILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVS 358
Query: 394 DRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERRE 447
+D + E E+ + RR R
Sbjct: 359 VIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSERELTDT 412
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 325 bits (835), Expect = e-101
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 23/270 (8%)
Query: 712 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 65 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949
RM+DMGFEP ++KI+E + P + RQT+MF+AT P +
Sbjct: 185 RMLDMGFEPQIRKIIEESNM----PSGIN-----------------RQTLMFSATFPKEI 223
Query: 950 ERLARSYLRRPATVYIGSVGKPTERIEQIV 979
++LA +L + +G VG ++ I+Q +
Sbjct: 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
Score = 325 bits (835), Expect = e-101
Identities = 97/270 (35%), Positives = 147/270 (54%), Gaps = 23/270 (8%)
Query: 1387 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 5 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 64
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 65 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 125 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 184
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624
RM+DMGFEP ++KI+E + P + RQT+MF+AT P +
Sbjct: 185 RMLDMGFEPQIRKIIEESNM----PSGIN-----------------RQTLMFSATFPKEI 223
Query: 1625 ERLARSYLRRPATVYIGSVGKPTERIEQIV 1654
++LA +L + +G VG ++ I+Q +
Sbjct: 224 QKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
Score = 280 bits (720), Expect = 4e-86
Identities = 92/284 (32%), Positives = 135/284 (47%), Gaps = 68/284 (23%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I Y PTPIQ+ AIP L++RDI+ A+TGSGKT AFL+P++ + +
Sbjct: 38 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 97
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+APTRELA QI E+ KF +R+ +V GG Q +++GC +++AT
Sbjct: 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVAT 157
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D +E + L C YIVLDEADRM+DMGFEP ++KI+E + P +
Sbjct: 158 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM----PSGIN---- 209
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQT+M
Sbjct: 210 -------------RQTLM------------------------------------------ 214
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIV 285
F+AT P +++LA +L + +G VG ++ I+Q +
Sbjct: 215 -----FSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEI 253
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 330 bits (847), Expect = e-100
Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 56/491 (11%)
Query: 643 GIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEM 702
+ + Q+ L++ + + + V+ ++ ++++ +DR +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLI 66
Query: 703 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 762
+ + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 67 RSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM 126
Query: 763 LQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA Q
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELALQ 177
Query: 821 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLN 878
+ + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234
Query: 879 QCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ 937
+ VLDEAD MI G + +I +P + Q
Sbjct: 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQ 269
Query: 938 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR 997
++F+AT +V + A+ + P + + + + I+Q Y+L K + L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCN 326
Query: 998 --GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1053
G +IF + +K A LA L K G+ L G EQR + + G + +
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 1054 LVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-K 1106
LV T+V RGID++ VS+VIN+D+ E Y HRIGRTGR GK GLAV+ K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 1107 DDSHLFYDLKQ 1117
++ +++
Sbjct: 447 HSMNILNRIQE 457
Score = 330 bits (847), Expect = e-100
Identities = 116/491 (23%), Positives = 216/491 (43%), Gaps = 56/491 (11%)
Query: 1318 GIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEM 1377
+ + Q+ L++ + + + V+ ++ ++++ +DR +
Sbjct: 7 ALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLI 66
Query: 1378 TERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIG 1437
+ + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 67 RSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM 126
Query: 1438 LQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 1495
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA Q
Sbjct: 127 LAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELALQ 177
Query: 1496 IEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVLN 1553
+ + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 178 TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 234
Query: 1554 QCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQ 1612
+ VLDEAD MI G + +I +P + Q
Sbjct: 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNCQ 269
Query: 1613 TVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR 1672
++F+AT +V + A+ + P + + + + I+Q Y+L K + L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK--FQALCN 326
Query: 1673 --GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDI 1728
G +IF + +K A LA L K G+ L G EQR + + G + +
Sbjct: 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386
Query: 1729 LVATDVAGRGIDIKDVSMVINYDM------AKSIEDYTHRIGRTGRAGKEGLAVSFCT-K 1781
LV T+V RGID++ VS+VIN+D+ E Y HRIGRTGR GK GLAV+ K
Sbjct: 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446
Query: 1782 DDSHLFYDLKQ 1792
++ +++
Sbjct: 447 HSMNILNRIQE 457
Score = 212 bits (541), Expect = 2e-59
Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 96/372 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 157
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 214
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 265
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYN 236
+ Q ++F+A
Sbjct: 266 ----------------RNCQMLLFSA---------------------------------- 275
Query: 237 SKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
T +V + A+ + P + + + + I+Q Y+L K
Sbjct: 276 -------------TFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQ-YYVLCSSRDEK- 320
Query: 297 LMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSL 352
+ L G +IF + +K A LA L K G+ L G EQR +
Sbjct: 321 -FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 379
Query: 353 KGGSKDILMAGD 364
+ G + +L+ +
Sbjct: 380 REGKEKVLVTTN 391
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 291 bits (746), Expect = 9e-90
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 42/268 (15%)
Query: 710 FREDYSITIKGGKVPDPVRNWKEAS----LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 765
R + I ++G +PDP+ +++ + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 7 LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 766 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 825
R+++ A TGSGKTLAF +P+L+ ++ +G A+I++PTRELA QI E
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQPAN--------KGFRALIISPTRELASQIHREL 118
Query: 826 NKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTY 882
K G R ++ ++ G + +I++ TP RLI +L+ ++ +
Sbjct: 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178
Query: 883 IVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
+V+DE+D++ + GF + I +
Sbjct: 179 LVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK-------------------VRRA 214
Query: 940 MFTATMPPAVERLARSYLRRPATVYIGS 967
MF+AT VE+ + L +V IG+
Sbjct: 215 MFSATFAYDVEQWCKLNLDNVISVSIGA 242
Score = 291 bits (746), Expect = 9e-90
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 42/268 (15%)
Query: 1385 FREDYSITIKGGKVPDPVRNWKEAS----LPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
R + I ++G +PDP+ +++ + + +L+ I G+ PTPIQ QAIP+ L
Sbjct: 7 LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 1441 RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEET 1500
R+++ A TGSGKTLAF +P+L+ ++ +G A+I++PTRELA QI E
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQPAN--------KGFRALIISPTRELASQIHREL 118
Query: 1501 NKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIATPGRLIDVLENRYLVLN--QCTY 1557
K G R ++ ++ G + +I++ TP RLI +L+ ++ +
Sbjct: 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178
Query: 1558 IVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 1614
+V+DE+D++ + GF + I +
Sbjct: 179 LVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK-------------------VRRA 214
Query: 1615 MFTATMPPAVERLARSYLRRPATVYIGS 1642
MF+AT VE+ + L +V IG+
Sbjct: 215 MFSATFAYDVEQWCKLNLDNVISVSIGA 242
Score = 241 bits (618), Expect = 1e-72
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ PTPIQ QAIP+ L R+++ A TGSGKTLAF +P+L+ ++
Sbjct: 44 ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPAN------- 96
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQ-GFRLRLGCEIVIA 120
+G A+I++PTRELA QI E K G R ++ ++ G + +I++
Sbjct: 97 -KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155
Query: 121 TPGRLIDVLENRYLVLN--QCTYIVLDEADRMID---MGFEPDVQKILEYMPVTNLKPDT 175
TP RLI +L+ ++ ++V+DE+D++ + GF + I
Sbjct: 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI-----FLACTSHK 210
Query: 176 EDAEDENKLLANYNSKKKYRQTVMFTATMPP 206
+ MF+AT
Sbjct: 211 -------------------VRRAMFSATFAY 222
Score = 50.3 bits (121), Expect = 2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+ MF+AT VE+ + L +V IG+
Sbjct: 211 VRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 260 bits (667), Expect = 3e-79
Identities = 89/245 (36%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
+ + +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
LP+L + + Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 99 LPIL---------NALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 149
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V K
Sbjct: 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
IL+ +P + R+T +F+ATM V++L R+ L+ P
Sbjct: 210 ILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244
Query: 963 VYIGS 967
+ S
Sbjct: 245 CAVSS 249
Score = 260 bits (667), Expect = 3e-79
Identities = 89/245 (36%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
+ + +K+ + + E +++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
LP+L + + Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+
Sbjct: 99 LPIL---------NALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGI 149
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
Q L I+IATPGRLID LEN + L Y+V+DEADR+++M FE +V K
Sbjct: 150 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 209
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
IL+ +P + R+T +F+ATM V++L R+ L+ P
Sbjct: 210 ILKVIP-------------------------RDRKTFLFSATMTKKVQKLQRAALKNPVK 244
Query: 1638 VYIGS 1642
+ S
Sbjct: 245 CAVSS 249
Score = 235 bits (601), Expect = 2e-70
Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 35/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++G+ +PT IQ +AIP+ LQ RDIIG+AETGSGKT AF LP+L + +
Sbjct: 58 CDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL---------NALLET 108
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
Q +A+++ PTRELA QI E+ G+ +G+++ ++VGG+ Q L I+IAT
Sbjct: 109 PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIAT 168
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRLID LEN + L Y+V+DEADR+++M FE +V KIL+ +P
Sbjct: 169 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------- 215
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
+ R+T +F+ATM
Sbjct: 216 ------------RDRKTFLFSATMTK 229
Score = 48.8 bits (117), Expect = 5e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+ R+T +F+ATM V++L R+ L+ P + S
Sbjct: 216 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 243 bits (622), Expect = 6e-74
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 1631 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 1683
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 1684 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1743
+K D + + L G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPA 122
Query: 1744 VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISSPVSTC 1802
+ VINYDM + IE+Y HRIGRTG +G G+A +F K D + DLK +++ +
Sbjct: 123 IQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAK-QKV 181
Query: 1803 PPELLN 1808
PP L
Sbjct: 182 PPVLQV 187
Score = 237 bits (608), Expect = 5e-72
Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query: 956 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 1008
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 1009 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKD 1068
+K D + + L G A +HGGK QE+R A+ + + G KD+LVATDVA +G+D
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPA 122
Query: 1069 VSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKD-DSHLFYDLKQMMISS 1122
+ VINYDM + IE+Y HRIGRTG +G G+A +F K D + DLK +++ +
Sbjct: 123 IQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEA 177
Score = 118 bits (299), Expect = 2e-30
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 262 YLRRPATVYIGS-------VGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVN 314
+ + V +G+ +G + + Q V + E+ K L+E L + PV+IF
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAE 62
Query: 315 QKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
+K D + + L G A +HGGK QE+R A+ + + G KD+L+A D S+
Sbjct: 63 KKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 244 bits (624), Expect = 2e-73
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 32/243 (13%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 783
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL
Sbjct: 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 784 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 843
+P+L ++L ++ + G +I++PTRELA Q E K G L++GG
Sbjct: 81 VPVL---EALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 844 SREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQK 902
+ + R+ I++ TPGRL+ ++ +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 963 VYI 965
V++
Sbjct: 230 VWV 232
Score = 244 bits (624), Expect = 2e-73
Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 32/243 (13%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFL 1458
+ + + + L + L+ +++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL
Sbjct: 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
Query: 1459 LPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGL 1518
+P+L ++L ++ + G +I++PTRELA Q E K G L++GG
Sbjct: 81 VPVL---EALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGK 135
Query: 1519 SREEQGFRLRLGCEIVIATPGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
+ + R+ I++ TPGRL+ ++ +VLDEADR++DMGF +
Sbjct: 136 DLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNA 194
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
++E +P K RQT++F+AT +V+ LAR L+ P
Sbjct: 195 VIENLP-------------------------KKRQTLLFSATQTKSVKDLARLSLKNPEY 229
Query: 1638 VYI 1640
V++
Sbjct: 230 VWV 232
Score = 221 bits (565), Expect = 1e-65
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 32/206 (15%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+++ Y T IQ+Q I + LQ +D++G A+TGSGKTLAFL+P+L ++L ++ +
Sbjct: 40 LQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL---EALYRLQWT--S 94
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
G +I++PTRELA Q E K G L++GG + + R+ I++ T
Sbjct: 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCT 153
Query: 122 PGRLIDVLENRY-LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRL+ ++ +VLDEADR++DMGF + ++E +P
Sbjct: 154 PGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------- 200
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K RQT++F+AT
Sbjct: 201 ------------KKRQTLLFSATQTK 214
Score = 46.1 bits (110), Expect = 3e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
K RQT++F+AT +V+ LAR L+ P V++
Sbjct: 201 KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 239 bits (613), Expect = 2e-72
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------E 61
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 854
++A ++ + P A+++ PTRELA Q+ E ++ V V GG +Q L
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLR 119
Query: 855 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 914
G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------ 173
Query: 915 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 -------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 239 bits (613), Expect = 2e-72
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 33/231 (14%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L EILE + G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------E 61
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL 1529
++A ++ + P A+++ PTRELA Q+ E ++ V V GG +Q L
Sbjct: 62 RLAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLR 119
Query: 1530 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 1589
G + V+ATPGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------ 173
Query: 1590 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 -------------------PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
Score = 215 bits (550), Expect = 4e-64
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G PTPIQ A+P+ L+ +D+IG A TG+GKTLAF LP+ ++A ++
Sbjct: 16 LHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA------ERLAPSQER 69
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++ PTRELA Q+ E ++ V V GG +Q L G + V+AT
Sbjct: 70 GRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVAT 127
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR +D L L L++ VLDEAD M+ MGFE +V+ +L P
Sbjct: 128 PGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP-------------- 173
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPA 207
RQT++F+AT+P
Sbjct: 174 -----------PSRQTLLFSATLPSW 188
Score = 49.8 bits (120), Expect = 1e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
RQT++F+AT+P +RLA Y++ P + +
Sbjct: 174 PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 235 bits (603), Expect = 5e-71
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM------- 63
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGF 850
+++ A+I APTRELA QI ET K I ++GG +++
Sbjct: 64 --EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-- 179
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 180 -----------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213
Score = 235 bits (603), Expect = 5e-71
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 38/237 (16%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM------- 63
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGF 1525
+++ A+I APTRELA QI ET K I ++GG +++
Sbjct: 64 --EKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 121
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-- 179
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 180 -----------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213
Score = 212 bits (541), Expect = 1e-62
Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++ +++
Sbjct: 19 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM---------EKIKPE 69
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFG----TPLGIRTVLVVGGLSREEQGFRLRLGCEI 117
A+I APTRELA QI ET K I ++GG +++ +L + I
Sbjct: 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 118 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTED 177
VI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP---------- 179
Query: 178 AEDENKLLANYNSKKKYRQTVMFTATMPPA--KILE-YM 213
K Q ++F+AT+P L+ YM
Sbjct: 180 ---------------KDLQMLVFSATIPEKLKPFLKKYM 203
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 233 bits (596), Expect = 2e-69
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
+ L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + +
Sbjct: 60 LVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELI 116
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
K+ M G +I++PTRELA Q + T L++GG +R + +L
Sbjct: 117 VKLRFMPR--NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG 174
Query: 854 LGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 912
G I++ATPGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP---- 230
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 231 ---------------------TRRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
Score = 233 bits (596), Expect = 2e-69
Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 32/234 (13%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
+ L+ I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + +
Sbjct: 60 LVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELI 116
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
K+ M G +I++PTRELA Q + T L++GG +R + +L
Sbjct: 117 VKLRFMPR--NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG 174
Query: 1529 LGCEIVIATPGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587
G I++ATPGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP---- 230
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 231 ---------------------TRRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
Score = 215 bits (550), Expect = 4e-63
Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 31/206 (15%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+++G+ T IQ ++I L+ RD++ A+TGSGKTLAFL+P + + + K+ M
Sbjct: 69 IKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV---ELIVKLRFMPR- 124
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
G +I++PTRELA Q + T L++GG +R + +L G I++AT
Sbjct: 125 -NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVAT 183
Query: 122 PGRLIDVLEN-RYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
PGRL+D ++N + +V+DEADR++D+GFE ++++I++ +P
Sbjct: 184 PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------- 230
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
RQT++F+AT
Sbjct: 231 ------------TRRQTMLFSATQTR 244
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYIG 272
RQT++F+AT VE LAR L++ +Y+G
Sbjct: 231 TRRQTMLFSATQTRKVEDLARISLKKEP-LYVG 262
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 226 bits (579), Expect = 6e-68
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 35/236 (14%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL- 62
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 847
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 --------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
Score = 226 bits (579), Expect = 6e-68
Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 35/236 (14%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL- 62
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREE 1522
R++ A+++ PTRELA Q+ + + + G + + GG + +
Sbjct: 63 --------ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
Score = 204 bits (521), Expect = 4e-60
Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 35/207 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ A+L+PLL R++
Sbjct: 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL---------ERLDLK 68
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+++ PTRELA Q+ + + + G + + GG + + RL +VIA
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPA 207
K RQ ++++AT P +
Sbjct: 176 ------------KNRQILLYSATFPLS 190
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 220 bits (562), Expect = 6e-66
Identities = 71/189 (37%), Positives = 99/189 (52%), Gaps = 6/189 (3%)
Query: 1627 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 1685
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 1686 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745
KGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI +V
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 116
Query: 1746 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPE 1805
VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++ + P
Sbjct: 117 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA-KQEVPSW 175
Query: 1806 LLNHPDAQH 1814
L N H
Sbjct: 176 LENMAYEHH 184
Score = 217 bits (555), Expect = 4e-65
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 952 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 1010
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 1011 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1070
KGAD L L GY ++HG + Q RE AL+ + G ILVAT VA RG+DI +V
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 116
Query: 1071 MVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120
VIN+D+ IE+Y HRIGRTGR G GLA SF + + ++ DL +++
Sbjct: 117 HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166
Score = 103 bits (260), Expect = 3e-25
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 258 LARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNR-GVKKPVIIFVNQK 316
+ + + G +E I Q V + E DKR L+++LN G ++FV K
Sbjct: 1 MHHHHHH----ENLYFQGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETK 56
Query: 317 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
KGAD L L GY ++HG + Q RE AL+ + G IL+A +R
Sbjct: 57 KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 217 bits (555), Expect = 2e-64
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 35/241 (14%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 71 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 121
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 122 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 905 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 964
+P Q V+ +ATMP V + ++R P +
Sbjct: 181 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215
Query: 965 I 965
+
Sbjct: 216 V 216
Score = 217 bits (555), Expect = 2e-64
Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 35/241 (14%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
L R++ + + P A+++APTRELA QI++ + I+ +GG S
Sbjct: 71 AAL---------QRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 121
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +I
Sbjct: 122 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 1580 EYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVY 1639
+P Q V+ +ATMP V + ++R P +
Sbjct: 181 TLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVRIL 215
Query: 1640 I 1640
+
Sbjct: 216 V 216
Score = 197 bits (502), Expect = 3e-57
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 36/210 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L R++ +
Sbjct: 29 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAAL---------QRIDTS 79
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 138
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 139 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 184
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILE 211
Q V+ +ATMP +LE
Sbjct: 185 -----------PTTQVVLLSATMPND-VLE 202
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 217 bits (554), Expect = 4e-64
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 725 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
+ V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 785 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 844
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 87 SIL---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN 137
Query: 845 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 903
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I
Sbjct: 138 VRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197
Query: 904 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 198 FQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
Query: 964 YI 965
+
Sbjct: 233 LV 234
Score = 217 bits (554), Expect = 4e-64
Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 1400 DPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
+ V N+ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 1460 PLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLS 1519
+L ++E + A+++APTRELAQQI++ G +G +GG +
Sbjct: 87 SIL---------QQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN 137
Query: 1520 REEQGFRLRL-GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKI 1578
+ +L+ IV+ TPGR+ D+L RYL VLDEAD M+ GF+ + +I
Sbjct: 138 VRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEI 197
Query: 1579 LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
+ + Q V+ +ATMP V + + ++R P +
Sbjct: 198 FQKLN-------------------------TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
Query: 1639 YI 1640
+
Sbjct: 233 LV 234
Score = 196 bits (500), Expect = 7e-57
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 36/211 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L ++E
Sbjct: 45 IYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL---------QQLEIE 95
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRL-GCEIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L+ IV+
Sbjct: 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVG 155
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + +I + +
Sbjct: 156 TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------- 202
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILE 211
Q V+ +ATMP +LE
Sbjct: 203 ------------TSIQVVLLSATMPTD-VLE 220
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 211 bits (540), Expect = 2e-62
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------- 73
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
++E ++M TRELA QI +E +F + ++ + GGLS ++ L+
Sbjct: 74 --QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131
Query: 854 LGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTN 911
C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--- 188
Query: 912 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
+Q +MF+AT+ + + R +++ P +++
Sbjct: 189 ----------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
Score = 211 bits (540), Expect = 2e-62
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL------- 73
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
++E ++M TRELA QI +E +F + ++ + GGLS ++ L+
Sbjct: 74 --QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 131
Query: 1529 LGCE-IVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTN 1586
C IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 132 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--- 188
Query: 1587 LKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
+Q +MF+AT+ + + R +++ P +++
Sbjct: 189 ----------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
Score = 188 bits (480), Expect = 2e-54
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L ++E
Sbjct: 29 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL---------QQLEPV 79
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCE-IVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L+ C IV+
Sbjct: 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 139
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 140 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 188
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPPA 207
+Q +MF+AT+
Sbjct: 189 --------------HEKQVMMFSATLSKE 203
Score = 48.4 bits (116), Expect = 7e-06
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
+Q +MF+AT+ + + R +++ P +++
Sbjct: 191 KQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 209 bits (535), Expect = 1e-61
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 735 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 794
L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F L
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------- 83
Query: 795 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 853
+ + +I+APTRE+A QI G + G+ + +GG + RL+
Sbjct: 84 --DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNL 912
C I + +PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP---- 196
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
+Q + +AT P + Y+R P V + S
Sbjct: 197 ---------------------ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
Score = 209 bits (535), Expect = 1e-61
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 37/235 (15%)
Query: 1410 LPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLP 1469
L +LE + G+ P+P+Q +AIP+G D+I A++G+GKT F L
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL------- 83
Query: 1470 KIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLR 1528
+ + +I+APTRE+A QI G + G+ + +GG + RL+
Sbjct: 84 --DSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK 141
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNL 1587
C I + +PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP---- 196
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
+Q + +AT P + Y+R P V + S
Sbjct: 197 ---------------------ASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
Score = 188 bits (481), Expect = 2e-54
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 38/212 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ P+P+Q +AIP+G D+I A++G+GKT F L +
Sbjct: 39 LRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL---------DSLVLE 89
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ +I+APTRE+A QI G + G+ + +GG + RL+ C I +
Sbjct: 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVG 148
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG-FEPDVQKILEYMPVTNLKPDTEDAE 179
+PGR+ ++E YL +LDEAD++++ G F+ + I +P
Sbjct: 149 SPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------ 196
Query: 180 DENKLLANYNSKKKYRQTVMFTATMPPAKILE 211
+Q + +AT P +
Sbjct: 197 -------------ASKQMLAVSATYPEF-LAN 214
Score = 45.3 bits (108), Expect = 8e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGS 273
+Q + +AT P + Y+R P V + S
Sbjct: 199 KQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 189 bits (483), Expect = 1e-53
Identities = 63/329 (19%), Positives = 138/329 (41%), Gaps = 42/329 (12%)
Query: 642 AGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 701
+ + Q+ L++ + + + V+ ++ ++++ +DR
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKL 65
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 761
+ + + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 66 IRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPL 125
Query: 762 GLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 819
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA
Sbjct: 126 MLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELAL 176
Query: 820 QIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVL 877
Q + + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233
Query: 878 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 936
+ VLDEAD MI G + +I +P +
Sbjct: 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNC 268
Query: 937 QTVMFTATMPPAVERLARSYLRRPATVYI 965
Q ++F+AT +V + A+ + P + +
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
Score = 189 bits (483), Expect = 1e-53
Identities = 63/329 (19%), Positives = 138/329 (41%), Gaps = 42/329 (12%)
Query: 1317 AGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 1376
+ + Q+ L++ + + + V+ ++ ++++ +DR
Sbjct: 6 WALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKL 65
Query: 1377 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPI 1436
+ + + V++++E L ++L+ + +G+ P+ IQ A+P+
Sbjct: 66 IRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPL 125
Query: 1437 GLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQ 1494
L +++I +++G+GKT AF+L +L +++E A++ P + ++PT ELA
Sbjct: 126 MLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVEPANKYPQCLCLSPTYELAL 176
Query: 1495 QIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE-NRYLVL 1552
Q + + G ++ V G E ++ +IVI TPG ++D +++
Sbjct: 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDP 233
Query: 1553 NQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYR 1611
+ VLDEAD MI G + +I +P +
Sbjct: 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------RNC 268
Query: 1612 QTVMFTATMPPAVERLARSYLRRPATVYI 1640
Q ++F+AT +V + A+ + P + +
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
Score = 169 bits (431), Expect = 9e-47
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 43/216 (19%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQN--RDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+ +G+ P+ IQ A+P+ L +++I +++G+GKT AF+L +L +++E
Sbjct: 107 VYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML---------SQVE 157
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPL-GIRTVLVVGGLSREEQGFRLRLGCEIV 118
A++ P + ++PT ELA Q + + G ++ V G E ++ +IV
Sbjct: 158 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIV 214
Query: 119 IATPGRLIDVLE-NRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTE 176
I TPG ++D +++ + VLDEAD MI G + +I +P
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------- 265
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEY 212
+ Q ++F+AT + + ++
Sbjct: 266 ----------------RNCQMLLFSATFEDS-VWKF 284
Score = 39.7 bits (93), Expect = 0.006
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 240 KYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
+ Q ++F+AT +V + A+ + P + +
Sbjct: 266 RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 178 bits (454), Expect = 1e-51
Identities = 62/146 (42%), Positives = 82/146 (56%)
Query: 972 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
GG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y HR GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GRAG +G A+SF T + D+++
Sbjct: 127 GRAGNKGKAISFVTAFEKRFLADIEE 152
Score = 178 bits (454), Expect = 1e-51
Identities = 62/146 (42%), Positives = 82/146 (56%)
Query: 1647 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
GG QE R +N K G LVATDVA RGIDI+++S+VINYD+ E Y HR GRT
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GRAG +G A+SF T + D+++
Sbjct: 127 GRAGNKGKAISFVTAFEKRFLADIEE 152
Score = 80.6 bits (200), Expect = 2e-17
Identities = 30/87 (34%), Positives = 40/87 (45%)
Query: 278 TERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
T IE V + E++K L +VL IIF K+ + L L+ LGY +H
Sbjct: 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIH 66
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGD 364
GG QE R +N K G L+A D
Sbjct: 67 GGMIQEDRFDVMNEFKRGEYRYLVATD 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity
A; hydrolase inhibitor-hydrolase complex, DEAD box RNA
helicase; 2.90A {Escherichia coli}
Length = 170
Score = 176 bits (449), Expect = 8e-51
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 973 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q +R A+ L G ++LVATDVA RGIDI DVS V N+DM +S + Y HRIGRT
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYD 1114
RAG++G A+S D L
Sbjct: 122 ARAGRKGTAISLVEAHDHLLLGK 144
Score = 176 bits (449), Expect = 8e-51
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Query: 1648 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q +R A+ L G ++LVATDVA RGIDI DVS V N+DM +S + Y HRIGRT
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYD 1789
RAG++G A+S D L
Sbjct: 122 ARAGRKGTAISLVEAHDHLLLGK 144
Score = 76.1 bits (188), Expect = 8e-16
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 279 ERIEQIVYILSEQD-KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
++I Q Y + + K L+ +L + I+FV +++ LA L + G N C L
Sbjct: 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE 61
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGD 364
G Q +R A+ L G ++L+A D
Sbjct: 62 GEMVQGKRNEAIKRLTEGRVNVLVATD 88
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like
fold, PRE-mRNA processing protein; 1.90A {Homo sapiens}
SCOP: c.37.1.19
Length = 172
Score = 166 bits (423), Expect = 2e-47
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R G
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 1093 RAGKEGLAVSFCT-KDDSHLFYDLKQ 1117
R G +GLA++F + ++D+ + D++
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQD 149
Score = 166 bits (423), Expect = 2e-47
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
G QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R G
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 1768 RAGKEGLAVSFCT-KDDSHLFYDLKQ 1792
R G +GLA++F + ++D+ + D++
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQD 149
Score = 71.1 bits (175), Expect = 4e-14
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 338
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H
Sbjct: 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 339 GKGQEQRELALNSLKGGSKDILMAGD 364
G QE+R K + IL+A +
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATN 89
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 160 bits (406), Expect = 1e-44
Identities = 47/144 (32%), Positives = 73/144 (50%)
Query: 974 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q +RE L + + G +LVATDVA RG+DI V +V++Y + E Y HR GRTGR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQ 1117
AG+ G V + L++
Sbjct: 125 AGRGGRVVLLYGPRERRDVEALER 148
Score = 160 bits (406), Expect = 1e-44
Identities = 47/144 (32%), Positives = 73/144 (50%)
Query: 1649 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q +RE L + + G +LVATDVA RG+DI V +V++Y + E Y HR GRTGR
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGR 124
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQ 1792
AG+ G V + L++
Sbjct: 125 AGRGGRVVLLYGPRERRDVEALER 148
Score = 70.4 bits (173), Expect = 2e-13
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 280 RIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGD 64
Query: 340 KGQEQRELALNSLKGGSKDILMAGD 364
Q +RE L + + G +L+A D
Sbjct: 65 LSQGERERVLGAFRQGEVRVLVATD 89
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 155 bits (394), Expect = 1e-43
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 973 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GR G++G+A++F T +D +L++
Sbjct: 122 GRFGRKGVAINFVTNEDVGAMRELEK 147
Score = 155 bits (394), Expect = 1e-43
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 1648 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GR G++G+A++F T +D +L++
Sbjct: 122 GRFGRKGVAINFVTNEDVGAMRELEK 147
Score = 60.7 bits (148), Expect = 2e-10
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 279 ERIEQI-VYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
E I+Q V + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY 61
Query: 338 GGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
Q++R+ + + GS IL++ D +R
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTDLLAR 92
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics,
structural consortium, SGC, alternative initiation,
ATP-binding, devel protein; 2.80A {Homo sapiens}
Length = 175
Score = 151 bits (385), Expect = 3e-42
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 1028
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 1029 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIE 1082
L G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 122
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
Y HRIGRTGR GK+GLA + D+ ++
Sbjct: 123 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157
Score = 151 bits (385), Expect = 3e-42
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 1703
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 1704 TLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM------AKSIE 1757
L G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYE 122
Query: 1758 DYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
Y HRIGRTGR GK+GLA + D+ ++
Sbjct: 123 TYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157
Score = 61.1 bits (149), Expect = 2e-10
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNR--GVKKP--VIIFVNQKKGADVLAKGLEKLGYNAC 334
I Q Y+L E K K + L G IIF ++ A L + + G+
Sbjct: 6 NNIRQY-YVLCEHRKDK--YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 335 TLHGGKGQEQRELALNSLKGGSKDILMAGDRRSR 368
L G EQR + + G + +L+ + +R
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase, nucleotide-binding;
2.80A {Thermus thermophilus}
Length = 300
Score = 156 bits (395), Expect = 5e-42
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
Q +RE + + + G +LVATDVA RG+DI V +V++Y M E Y HR GRTGRA
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQ 1117
G+ G V + L++
Sbjct: 123 GRGGRVVLLYGPRERRDVEALER 145
Score = 156 bits (395), Expect = 5e-42
Identities = 47/143 (32%), Positives = 73/143 (51%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
Q +RE + + + G +LVATDVA RG+DI V +V++Y M E Y HR GRTGRA
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQ 1792
G+ G V + L++
Sbjct: 123 GRGGRVVLLYGPRERRDVEALER 145
Score = 67.9 bits (166), Expect = 5e-12
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
E+ + + + L ++L ++F K + +A+GL +LG+ A LHG
Sbjct: 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDM 62
Query: 341 GQEQRELALNSLKGGSKDILMAGD 364
Q +RE + + + G +L+A D
Sbjct: 63 SQGERERVMGAFRQGEVRVLVATD 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 99.0 bits (246), Expect = 1e-20
Identities = 110/651 (16%), Positives = 178/651 (27%), Gaps = 237/651 (36%)
Query: 760 PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ---GPYAIIMAPTRE 816
P+ L + G E L+P + A Q I+ PT
Sbjct: 8 PLTLSH----GSLEH------VLLVPTASFFI----------ASQLQEQFNKILPEPTEG 47
Query: 817 LAQQIEEETN-----KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 871
A E T KF LG V + + G +++ + E
Sbjct: 48 FAADDEPTTPAELVGKF---LG----YVSSLVEPSKVGQF----DQVLNL----CLTEFE 92
Query: 872 NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK-LLANY- 929
N YL N D+ + L + + + K L+ NY
Sbjct: 93 NCYLEGN--------------------DIHAL-----AAKLLQENDTTLVKTKELIKNYI 127
Query: 930 -------NSKKKYRQTVMFTATMPPAVERLARSY---------------LRRPATVYIGS 967
K + +F A E A+ LR Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 968 VGKPTERIEQIVYILSEQDKRKK--------LMEVLNRGVKKPVIIFVNQKKGADVLAK- 1018
VG + + + L + ++E L P D L
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP---------DKDYLLSI 234
Query: 1019 -------GLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1069
G+ +L L G E R L G S+ ++ A +A
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIA--------- 284
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-----CTKDDSHLFYDLKQMMISSPV 1124
S E + + ++ + V F C + + L ++ +
Sbjct: 285 -------ETDSWESFF-------VSVRKAITVLFFIGVRCYEAYPNT--SLPPSILEDSL 328
Query: 1125 TGRAGKEG--LAVS---------FCTKDDSHLFYDLKQMMIS---SP---VSTCPPELLN 1167
G L++S + K +SHL KQ+ IS V + PP+ L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLVNGAKNLVVSGPPQSLY 387
Query: 1168 HPDAQ-HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSAC 1226
+ K A +SR P +R+ + F S+RF
Sbjct: 388 GLNLTLRK----AKAPSGLDQSRIPFSERKLK---------F-----------SNRF--- 420
Query: 1227 SLPRS---HKSSSLLSRYSEQDPEEKELNKDKEREGEAIKERYLGL------------VK 1271
LP + H S LL P +NKD + + + + + V
Sbjct: 421 -LPVASPFH--SHLLV------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 1272 KKRRVRRLND---RKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI 1319
R+ D R V W+ + H + F G G +G+
Sbjct: 472 SGSISERIVDCIIRLPV-KWETTTQFKA--------THILDF-GPGGASGL 512
Score = 79.7 bits (196), Expect = 8e-15
Identities = 96/526 (18%), Positives = 165/526 (31%), Gaps = 169/526 (32%)
Query: 464 EPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQ 523
EPTE G AA EP + EL+ KFL E
Sbjct: 43 EPTE-----------GFAADDEPTTPAELVG------------KFLGYVSSLVE------ 73
Query: 524 AEVEEMRKKMEEERKKRQEFTKEA--SFESK--REN----FDARLRRDREKKKEDPEEKE 575
+ + + FE+ N A+L ++ +
Sbjct: 74 ----------PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE--------NDTT 115
Query: 576 LNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQF 635
L K K E IK + KR + ++ + A + + + F
Sbjct: 116 LVKTK----ELIKNYITARIMAKRPFDKKSNSAL---FRAVGEGNA---QLV-----AIF 160
Query: 636 FGRGNIAG-IDIKAQKRDQSKFYGEMLEKR-RTEAEKEQEKVRLKKVKKREEKQKWDDRH 693
G+GN + + RD + Y ++ + AE E +R ++ Q +
Sbjct: 161 GGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 694 WTEKSLDEMTER-DWRIFREDYSITIKGGKVPDPVRNWKEASLP----TEILEII---EK 745
W L+ + D +DY ++I P+ S P ++ + +
Sbjct: 218 W----LENPSNTPD-----KDYLLSI-------PI------SCPLIGVIQLAHYVVTAKL 255
Query: 746 IGYAEPTPIQRQAIPIGL--QNRDIIG---VAETGSGKTLAFL------LPLLVWI---- 790
+G+ TP + ++ G ++ ++ +AET S + +F + +L +I
Sbjct: 256 LGF---TPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRC 310
Query: 791 ------QSLPKIARMEDADQG-----PYAIIMAPTRELAQQIEEETNKF---GTPLGI-- 834
SLP + + P I T+E Q +TN G + I
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 835 ---RTVLVVGGLSREEQGFRLRLGCEIVIATPG----------RLIDVLENRYLVLNQ-- 879
LVV G + G L L A G R + NR+L +
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKL-KFSNRFLPVASPF 427
Query: 880 -CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK-P--DTEDAED 921
L A +I+ D+ K +++ P DT D D
Sbjct: 428 HSHL--LVPASDLIN----KDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 65.1 bits (158), Expect = 2e-10
Identities = 78/425 (18%), Positives = 144/425 (33%), Gaps = 119/425 (28%)
Query: 1232 HKSSSLLSRYSEQDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDAS 1291
H +L ++ +++ + L K KE IK + KR + ++ + A
Sbjct: 102 H---ALAAKLLQEN--DTTLVKTKE----LIKNYITARIMAKRPFDKKSNSAL---FRAV 149
Query: 1292 EDTSVDYNSIYKERHQVQFFGRGNIAG-IDIKAQKRDQSKFYGEMLEKR-RTEAEKEQEK 1349
+ + + F G+GN + + RD + Y ++ + AE E
Sbjct: 150 GEGNA---QLV-----AIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 1350 VRLKKVKKREEKQKWDDRHWTEKSLDEMTER-DWRIFREDYSITIKGGKVPDPVRNWKEA 1408
+R ++ Q + W L+ + D +DY ++I P+
Sbjct: 199 IRTTLDAEKVFTQGLNILEW----LENPSNTPD-----KDYLLSI-------PI------ 236
Query: 1409 SLP----TEILEII---EKIGYAEPTPIQRQAIPIGL--QNRDIIG---VAETGSGKTLA 1456
S P ++ + + +G+ TP + ++ G ++ ++ +AET S + +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLKGATGHSQGLVTAVAIAETDSWE--S 291
Query: 1457 FL------LPLLVWI----------QSLPKIARMEDADQG-----PYAIIMAPTRELAQQ 1495
F + +L +I SLP + + P I T+E Q
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 1496 IEEETNKF---GTPLGI-----RTVLVVGGLSREEQGFRLRLGCEIVIATPG-------- 1539
+TN G + I LVV G + G L L A G
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPF 409
Query: 1540 --RLIDVLENRYLVLNQ---CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK-P--DT 1591
R + NR+L + L A +I+ D+ K +++ P DT
Sbjct: 410 SERKL-KFSNRFLPVASPFHSHL--LVPASDLIN----KDLVKNNVSFNAKDIQIPVYDT 462
Query: 1592 EDAED 1596
D D
Sbjct: 463 FDGSD 467
Score = 57.8 bits (139), Expect = 4e-08
Identities = 106/691 (15%), Positives = 189/691 (27%), Gaps = 288/691 (41%)
Query: 941 FTATMPPAVERLARSYLRRPATV------YIGSVGKPTERIEQIVYI--LSEQDKRKKLM 992
F +P E A P T ++G Y+ L E K +
Sbjct: 37 FNKILPEPTEGFAADD--EPTTPAELVGKFLG-------------YVSSLVEPSKVGQFD 81
Query: 993 EVLNRGVKKPVIIFVNQ-KKGADV--LAKGLEKLG--------------YNACTLHGGKG 1035
+VLN + + F N +G D+ LA L + A +
Sbjct: 82 QVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 1036 QEQRELAL-NSLKGGSKDILVATDVA---GRGIDIKDVSMVINY--DMAKSIEDYTHRIG 1089
++ AL ++ G+ + VA G+G +Y ++ + Y +G
Sbjct: 138 DKKSNSALFRAVGEGNAQL-----VAIFGGQGN-------TDDYFEELRDLYQTYHVLVG 185
Query: 1090 R-TGRAGKEGLAVSFCTKDDSHLF---YDLKQMMISSPVTGRAGKEGLAVSFCTKDDSHL 1145
+ + + T D +F ++ + + +P T D +L
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENPSN-------------TPDKDYL 231
Query: 1146 FYDLKQMMISSPVS--------------TC------PPELLNHPDA--QHKPGTVM---- 1179
+S P+S T P EL ++ H G V
Sbjct: 232 --------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 1180 -MAGDRRSRSRSPARKRRSRSRDRDYDRRFKR--KKSPQ------CEAQSSRFSACSLPR 1230
S F +K+ + + SLP
Sbjct: 284 AETDSWES---------------------FFVSVRKAITVLFFIGVRCYEA-YPNTSLP- 320
Query: 1231 SHKSSSLLSRYSEQDPEEKELNKDKEREGE-----AIKERYLGLVKKK--RRVRRLNDRK 1283
S+L +D E EG +I L +++ V + N
Sbjct: 321 ----PSIL-----EDSLE-------NNEGVPSPMLSIS----NLTQEQVQDYVNKTNSHL 360
Query: 1284 FVFDWDASEDTSVD-YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG--EMLEKRR 1340
A + + N ++ V ++G YG L K +
Sbjct: 361 -----PAGKQVEISLVNG---AKNLV-------VSG--------PPQSLYGLNLTLRKAK 397
Query: 1341 TEAEKEQEKVRLKKVKKREEKQKWDDR--------HWTEKS--LDEMTERDWRIFREDYS 1390
+ +Q ++ E K K+ +R H S L ++ I ++
Sbjct: 398 APSGLDQSRIPF-----SERKLKFSNRFLPVASPFH----SHLLVPASD---LINKDLVK 445
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + + IP V +T
Sbjct: 446 NNVS----------FNAKDI----------------------QIP----------VYDTF 463
Query: 1451 SGKTL----AFLLPLLV-WIQSLPKIARMEDADQGP--YAIIMAPTR-----ELAQQIEE 1498
G L + +V I LP + E Q + + P L + ++
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLP--VKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 1499 ETNKFGTPLGIRTVLVVGGLSR---EEQGFR 1526
GT G+R V+V G L ++ GF+
Sbjct: 522 -----GT--GVR-VIVAGTLDINPDDDYGFK 544
Score = 54.3 bits (130), Expect = 5e-07
Identities = 68/428 (15%), Positives = 109/428 (25%), Gaps = 166/428 (38%)
Query: 1435 PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ---GPYAIIMAPTRE 1491
P+ L + G E L+P + A Q I+ PT
Sbjct: 8 PLTLSH----GSLEH------VLLVPTASFFI----------ASQLQEQFNKILPEPTEG 47
Query: 1492 LAQQIEEETN-----KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 1546
A E T KF LG V + + G +++ + E
Sbjct: 48 FAADDEPTTPAELVGKF---LG----YVSSLVEPSKVGQF----DQVLNL----CLTEFE 92
Query: 1547 NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK-LLANY- 1604
N YL N D+ + L + + + K L+ NY
Sbjct: 93 NCYLEGN--------------------DIHAL-----AAKLLQENDTTLVKTKELIKNYI 127
Query: 1605 -------NSKKKYRQTVMFTATMPPAVERLARSY---------------LRRPATVYIGS 1642
K + +F A E A+ LR Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 1643 VGKPTERIEQIVYILSEQDKRKK--------LMEVLNRGVKKPVIIFVNQKKGADVLAK- 1693
VG + + + L + ++E L P D L
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP---------DKDYLLSI 234
Query: 1694 -------GLEKLG--YNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDV 1744
G+ +L L G E R L G S+ ++ A +A
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIA--------- 284
Query: 1745 SMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSF-----CTKDDSHLFYDLKQMMISSPV 1799
S E + + ++ + V F C + Y P
Sbjct: 285 -------ETDSWESFF-------VSVRKAITVLFFIGVRC-----YEAY---------PN 316
Query: 1800 STCPPELL 1807
++ PP +L
Sbjct: 317 TSLPPSIL 324
Score = 53.9 bits (129), Expect = 5e-07
Identities = 46/228 (20%), Positives = 77/228 (33%), Gaps = 64/228 (28%)
Query: 3 EKIGYAEPTPIQRQAIPIGL--QNRDIIG---VAETGSGKTLAFL------LPLLVWI-- 49
+ +G+ TP + ++ G ++ ++ +AET S + +F + +L +I
Sbjct: 254 KLLGF---TPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGV 308
Query: 50 --------QSLPKIARMEDADQG-----PYAIIMAPTRELAQQIEEETNKF---GTPLGI 93
SLP + + P I T+E Q +TN G + I
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 94 -----RTVLVVGGLSREEQGFRLRLGCEIVIATPG----------RLIDVLENRYLVLNQ 138
LVV G + G L L A G R + NR+L +
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKL-KFSNRFLPVAS 425
Query: 139 ---CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK-P--DTEDAED 180
L A +I+ D+ K +++ P DT D D
Sbjct: 426 PFHSHL--LVPASDLIN----KDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 47.4 bits (112), Expect = 6e-05
Identities = 55/311 (17%), Positives = 92/311 (29%), Gaps = 111/311 (35%)
Query: 845 REEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMIDMGFEPDV 900
++ GF + +IVI P L + + + + M FE V
Sbjct: 1654 KDTYGFSIL---DIVINNPVNLT-IHFGGEKGKRI------------RENYSAMIFETIV 1697
Query: 901 QKILEYMPVTNLKPDTEDA-----EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 955
L+ + K E + E LL S ++ Q + A +S
Sbjct: 1698 DGKLKTEKI--FKEINEHSTSYTFRSEKGLL----SATQFTQPALTLMEK--AAFEDLKS 1749
Query: 956 Y-LRRPATVYIG-SVGKPTE-----------RIEQIVYILSEQDKRKKLMEVL----NRG 998
L + G S+G E IE +V ++ R M+V G
Sbjct: 1750 KGLIPADATFAGHSLG---EYAALASLADVMSIESLVEVVF---YRGMTMQVAVPRDELG 1803
Query: 999 VKKPVIIFVNQKK-----GADVLAKGLEKLG-----------YNACTLHGGKGQEQRELA 1042
+I +N + + L +E++G YN + Q Q
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV------ENQ-Q---- 1852
Query: 1043 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1102
V AG + V+ V+N+ + I D L S
Sbjct: 1853 -----------YV---AAGDLRALDTVTNVLNFIKLQKI-DIIE------------LQKS 1885
Query: 1103 FCTKD-DSHLF 1112
++ + HLF
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 47.4 bits (112), Expect = 6e-05
Identities = 55/311 (17%), Positives = 92/311 (29%), Gaps = 111/311 (35%)
Query: 1520 REEQGFRLRLGCEIVIATPGRLIDVLEN----RYLVLNQCTYIVLDEADRMIDMGFEPDV 1575
++ GF + +IVI P L + + + + M FE V
Sbjct: 1654 KDTYGFSIL---DIVINNPVNLT-IHFGGEKGKRI------------RENYSAMIFETIV 1697
Query: 1576 QKILEYMPVTNLKPDTEDA-----EDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 1630
L+ + K E + E LL S ++ Q + A +S
Sbjct: 1698 DGKLKTEKI--FKEINEHSTSYTFRSEKGLL----SATQFTQPALTLMEK--AAFEDLKS 1749
Query: 1631 Y-LRRPATVYIG-SVGKPTE-----------RIEQIVYILSEQDKRKKLMEVL----NRG 1673
L + G S+G E IE +V ++ R M+V G
Sbjct: 1750 KGLIPADATFAGHSLG---EYAALASLADVMSIESLVEVVF---YRGMTMQVAVPRDELG 1803
Query: 1674 VKKPVIIFVNQKK-----GADVLAKGLEKLG-----------YNACTLHGGKGQEQRELA 1717
+I +N + + L +E++G YN + Q Q
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV------ENQ-Q---- 1852
Query: 1718 LNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVS 1777
V AG + V+ V+N+ + I D L S
Sbjct: 1853 -----------YV---AAGDLRALDTVTNVLNFIKLQKI-DIIE------------LQKS 1885
Query: 1778 FCTKD-DSHLF 1787
++ + HLF
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 46.6 bits (110), Expect = 9e-05
Identities = 103/720 (14%), Positives = 167/720 (23%), Gaps = 309/720 (42%)
Query: 19 PIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQ---GPYAIIMAPTRE 75
P+ L + G E L+P + A Q I+ PT
Sbjct: 8 PLTLSH----GSLEH------VLLVPTASFFI----------ASQLQEQFNKILPEPTEG 47
Query: 76 LAQQIEEETN-----KFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLE 130
A E T KF LG V + + G +++ + E
Sbjct: 48 FAADDEPTTPAELVGKF---LG----YVSSLVEPSKVGQF----DQVLNL----CLTEFE 92
Query: 131 NRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENK-LLANYN 189
N YL N D+ + L + + + K L+ NY
Sbjct: 93 NCYLEGN--------------------DIHAL-----AAKLLQENDTTLVKTKELIKNY- 126
Query: 190 SKKKYRQTVMFTATMPPAKILEYMPVTNLKPDT--EDAEDEN-KLLA------NYNSKKK 240
A+I+ P + N +L+A N +
Sbjct: 127 ----IT-----------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD--- 168
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK---- 296
Y E L Y Y VG + + + L +
Sbjct: 169 Y-------------FEELRDLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 297 ----LMEVLNRGVKKPVIIFVNQKKGADVLAK--------GLEKLG--YNACTLHGGKGQ 342
++E L P D L G+ +L L G
Sbjct: 211 QGLNILEWLENPSNTP---------DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 343 EQRELALNSLKGGSKDIL------MAGDRRS-----------------RS-RSPPRKRRS 378
E R L G S+ ++ S R + P
Sbjct: 262 ELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 379 RSRERDYDRVRERDTDRSRDDRG--------RDRDRDRLER--DRSREREREKRHHRRDR 428
S D E G + +++++ +++ +
Sbjct: 321 PSILEDSLENNE----------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----- 365
Query: 429 SKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLS 488
S +V+S G P S
Sbjct: 366 ---------------------VEISLVNGAK--------NLVVS------GP-----PQS 385
Query: 489 LEEL---LAKKKAEEEA-RSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFT 544
L L L K KA +S+ F ERK + F+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPF--------------------------SERKLK--FS 417
Query: 545 KE-----ASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGL----- 594
+ F S L P +NKD + + + + +
Sbjct: 418 NRFLPVASPFHSHL------LV---------PASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 595 -------VKKKRRVRRLND---RKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGI 644
V R+ D R V W+ + H + F G G +G+
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPV-KWETTTQFKA--------THILDF-GPGGASGL 512
Score = 46.2 bits (109), Expect = 1e-04
Identities = 48/266 (18%), Positives = 80/266 (30%), Gaps = 78/266 (29%)
Query: 143 VLDEADR--MIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 200
V + AD GF + I+ PV E ++ NY++ M
Sbjct: 1645 VWNRADNHFKDTYGF--SILDIVINNPVN--LTIHFGGEKGKRIRENYSA--------MI 1692
Query: 201 TATMPPAKILEYMPVTNLKPDTEDA--EDENKLLANYNSKKKYRQTVMFTATMPPAVERL 258
T+ K+ + + E LL S ++ Q + A
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----SATQFTQPALTLMEK--AAFED 1746
Query: 259 ARSY-LRRPATVYIG-SVGKPTE-----------RIEQIVYILSEQDKRKKLMEVL---- 301
+S L + G S+G E IE +V ++ R M+V
Sbjct: 1747 LKSKGLIPADATFAGHSLG---EYAALASLADVMSIESLVEVVF---YRGMTMQVAVPRD 1800
Query: 302 NRGVKKPVIIFVNQKK-----GADVLAKGLEKLG-----------YNACTLHGGKGQ--- 342
G +I +N + + L +E++G YN + Q
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV------ENQQYV 1854
Query: 343 ---EQREL-----ALNSLKGGSKDIL 360
+ R L LN +K DI+
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 36.2 bits (83), Expect = 0.13
Identities = 56/411 (13%), Positives = 107/411 (26%), Gaps = 188/411 (45%)
Query: 547 ASFESKRENFDARLRRDREKK-----------KEDPEEKELNKDKEREGEAIKERYLGLV 595
+ ++ ++ ++ R D K +P ++ E+ G+ I+E Y ++
Sbjct: 1637 KTSKAAQDVWN---RADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIRENYSAMI 1692
Query: 596 KKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSK 655
++ D + I+KE I+ +
Sbjct: 1693 -----------------FETIVDGKLKTEKIFKE--------------INEHSTSYT--- 1718
Query: 656 FYGEMLEKRRTE-AEKEQ------EKVRLKKVKKREEKQKWDDR---HWTEKSLDEMTER 705
F E T+ Q EK + +K + D H SL E
Sbjct: 1719 FRSEKGLLSATQFT---QPALTLMEKAAFEDLKSKGLIPA-DATFAGH----SLGE---- 1766
Query: 706 DWRIFREDYSITIKGGKVPDPVRNWKEA------SLPTE-ILEIIEKIGYAEPTPIQRQA 758
Y+ A + E ++E++ G + A
Sbjct: 1767 --------YA-----------------ALASLADVMSIESLVEVVFYRGMT-----MQVA 1796
Query: 759 IPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELA 818
+P R G+ G+ A ++A Q +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASF---------------SQEALQ-----------YVV 1830
Query: 819 QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLN 878
+++ + T EIV N Y V N
Sbjct: 1831 ERVGKRTGWL---------------------------VEIV------------N-YNVEN 1850
Query: 879 QCTYIV------LDEADRMIDMGFEPDVQKI-LEYMPVTNLKPDTEDAEDE 922
Q Y+ LD +++ +QKI + + + E+ E
Sbjct: 1851 Q-QYVAAGDLRALDTVTNVLN---FIKLQKIDIIELQKS---LSLEEVEGH 1894
Score = 36.2 bits (83), Expect = 0.14
Identities = 65/452 (14%), Positives = 116/452 (25%), Gaps = 207/452 (45%)
Query: 1172 Q--HKPGTVMMAGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSACSLP 1229
Q + G M D S++ A+ +R+ D FK FS
Sbjct: 1624 QGSQEQG---MGMDLYKTSKA-AQDVWNRA-----DNHFKDTYG---------FS----- 1660
Query: 1230 RSHKSSSLLSRYSEQDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWD 1289
+ +P ++ E+ G+ I+E Y ++ ++
Sbjct: 1661 --------ILDIVINNPVNLTIHFGGEK-GKRIRENYSAMI-----------------FE 1694
Query: 1290 ASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTE-AEKEQ- 1347
D + I+KE I+ + F E T+ Q
Sbjct: 1695 TIVDGKLKTEKIFKE--------------INEHSTSYT---FRSEKGLLSATQFT---QP 1734
Query: 1348 -----EKVRLKKVKKREEKQKWDDR---HWTEKSLDEMTERDWRIFREDYSITIKGGKVP 1399
EK + +K + D H SL E Y+
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPA-DATFAGH----SLGE------------YA--------- 1768
Query: 1400 DPVRNWKEA------SLPTE-ILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSG 1452
A + E ++E++ G + A+P R G+ G
Sbjct: 1769 --------ALASLADVMSIESLVEVVFYRGMT-----MQVAVPRDELGRSNYGMIAINPG 1815
Query: 1453 KTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTV 1512
+ A ++A Q + +++ + T
Sbjct: 1816 RVAASF---------------SQEALQ-----------YVVERVGKRTGWL--------- 1840
Query: 1513 LVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV------LDEADRM 1566
EIV N Y V NQ Y+ LD +
Sbjct: 1841 ------------------VEIV------------N-YNVENQ-QYVAAGDLRALDTVTNV 1868
Query: 1567 IDMGFEPDVQKI-LEYMPVTNLKPDTEDAEDE 1597
++ +QKI + + + E+ E
Sbjct: 1869 LN---FIKLQKIDIIELQKS---LSLEEVEGH 1894
Score = 35.0 bits (80), Expect = 0.28
Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 48/191 (25%)
Query: 63 QGPYAII---MAPTREL-AQQIEEETNKF-GTPLGIRTVLV-VGG-LSREEQGFRLRLGC 115
Q P A+ A +L ++ + F G LG L + +S E
Sbjct: 1733 Q-P-ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES-------LV 1783
Query: 116 EIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDT 175
E+V G + V R + ++ R+ + +Q ++E
Sbjct: 1784 EVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE----------- 1831
Query: 176 EDAEDENKLL--ANYNSKKKYRQTV-------MFTATMPPAKILEYMPVTNLK----PDT 222
+ L+ NYN + +Q V + T T +L ++ + + +
Sbjct: 1832 RVGKRTGWLVEIVNYNV--ENQQYVAAGDLRALDTVT----NVLNFIKLQKIDIIELQKS 1885
Query: 223 EDAED-ENKLL 232
E+ E L
Sbjct: 1886 LSLEEVEGHLF 1896
Score = 34.3 bits (78), Expect = 0.54
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 30/142 (21%)
Query: 153 MGFEPDVQKILEY--MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKIL 210
M E + +++ Y M + P E ++A + P ++
Sbjct: 1777 MSIE-SLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-----------------INPGRVA 1818
Query: 211 EYMPVTNLKPDTED-AEDENKLL--ANYNSKKKYRQTVMFTATMPPAVERLAR--SYLRR 265
L+ E + L+ NYN + +Q V A A++ + ++++
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNV--ENQQYV--AAGDLRALDTVTNVLNFIKL 1874
Query: 266 PATVYIG-SVGKPTERIEQIVY 286
I E +E ++
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHLF 1896
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 90.6 bits (224), Expect = 1e-18
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
K + Q I + K KL E++ R +I+F N ++ A + L K G
Sbjct: 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386
Query: 1026 NACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
A G G Q +++L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
S R GRTGR G + K Y
Sbjct: 447 VPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYYWSSR 486
Score = 90.6 bits (224), Expect = 1e-18
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 13/161 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVL----NRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
K + Q I + K KL E++ R +I+F N ++ A + L K G
Sbjct: 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386
Query: 1701 NACTLHG--------GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
A G G Q +++L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 446
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
S R GRTGR G + K Y
Sbjct: 447 VPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYYWSSR 486
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 69 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 127
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 128 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 163
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 810 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 868
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 869 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 904
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
Score = 77.5 bits (190), Expect = 2e-14
Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+P Q + + + V TG GKTL ++ IA G +
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMM-----------IAEYRLTKYGGKVL 56
Query: 1485 IMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
++APT+ L Q E F P ++ + G E+ + ++++ATP + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLP--PEKIVALTGEKSPEERSKAWARAKVIVATPQTIEN 114
Query: 1544 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKIL 1579
L + L + IV DEA R + + +
Sbjct: 115 DLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 82.2 bits (203), Expect = 1e-15
Identities = 81/457 (17%), Positives = 157/457 (34%), Gaps = 102/457 (22%)
Query: 1407 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWI 1465
E + I +++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--- 61
Query: 1466 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 1525
G A+ + P + LA++ +E + +G+R + G ++
Sbjct: 62 -------HRILTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD--- 109
Query: 1526 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 1585
+I+IAT + +L + + +V DE I + D LE + +
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILA 164
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 1645
++ Q + +AT+ E LA +L A + + +
Sbjct: 165 HMLGKA--------------------QIIGLSATIGNPEE-LAE-WLN--AELIVSDW-R 199
Query: 1646 PTERIEQIVYI---LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGL- 1695
P + + + V+ ++ +D V KK +IFVN ++ A+ +A L
Sbjct: 200 PVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELS 258
Query: 1696 --------------------------------EKLGYNACTLHGGKGQEQRELALNSLKG 1723
+ + H G G+++R L + +
Sbjct: 259 KKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318
Query: 1724 GSKDILVATDVAGRGID-------IKDVSMVINYDMAK-SIEDYTHRIGRTGRAG--KEG 1773
G +VAT GI+ I+D+ ++ M + I + +GR GR + G
Sbjct: 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378
Query: 1774 LAVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLNHP 1810
+ T DD I +L N
Sbjct: 379 EGIIVSTSDDPREVM---NHYIFGKPEKLFSQLSNES 412
Score = 79.9 bits (197), Expect = 4e-15
Identities = 78/447 (17%), Positives = 155/447 (34%), Gaps = 99/447 (22%)
Query: 732 EASLPTEILEIIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWI 790
E + I +++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV--- 61
Query: 791 QSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGF 850
G A+ + P + LA++ +E + +G+R + G ++
Sbjct: 62 -------HRILTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD--- 109
Query: 851 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVT 910
+I+IAT + +L + + +V DE I + D LE + +
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILA 164
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGK 970
++ Q + +AT+ E LA +L A + + +
Sbjct: 165 HMLGKA--------------------QIIGLSATIGNPEE-LAE-WLN--AELIVSDW-R 199
Query: 971 PTERIEQIVYI---LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGL- 1020
P + + + V+ ++ +D V KK +IFVN ++ A+ +A L
Sbjct: 200 PVK-LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELS 258
Query: 1021 --------------------------------EKLGYNACTLHGGKGQEQRELALNSLKG 1048
+ + H G G+++R L + +
Sbjct: 259 KKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318
Query: 1049 GSKDILVATDVAGRGID-------IKDVSMVINYDMAK-SIEDYTHRIGRTGRAG--KEG 1098
G +VAT GI+ I+D+ ++ M + I + +GR GR + G
Sbjct: 319 GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378
Query: 1099 LAVSFCTKDDSHLFYDLKQMMISSPVT 1125
+ T DD + +
Sbjct: 379 EGIIVSTSDDPREVMNHYIFGKPEKLF 405
Score = 50.2 bits (120), Expect = 7e-06
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGL-QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
+++ G P Q +A+ G+ + ++ + T SGKTL + ++
Sbjct: 15 TLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMV----------HRI 64
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
G A+ + P + LA++ +E + +G+R + G ++ +I+I
Sbjct: 65 LTQGGK-AVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKD---EWLGKYDIII 119
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTE 176
AT + +L + + +V DE I + D LE + + ++ +
Sbjct: 120 ATAEKFDSLLRHGSSWIKDVKILVADE----IHLIGSRDRGATLE-VILAHMLGKAQ 171
Score = 31.0 bits (70), Expect = 4.3
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 281 IEQIVYI---LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGL 326
+ + V+ ++ +D V KK +IFVN ++ A+ +A L
Sbjct: 203 LRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALEL 257
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 78.3 bits (193), Expect = 2e-14
Identities = 75/437 (17%), Positives = 157/437 (35%), Gaps = 90/437 (20%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+G ++ + P R LA + E K+ +G+R + G ++
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG-- 113
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
C+I++ T + ++ NR + + +V+DE ++D LE + VT ++
Sbjct: 114 -DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI-HLLD---SEKRGATLE-ILVTKMR 167
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------VERLARSYLRRPATVYI 965
K + + +AT P + + RP +
Sbjct: 168 -----------------RMNKALRVIGLSATAPNVTEIAEWLDADYYVSDW--RPVPLVE 208
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
G + + T + + S + K ++L+E V++F + ++GA+ A L +
Sbjct: 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITA 267
Query: 1026 NACT------------------------------LHGGKGQEQRELALNSLKGGSKDILV 1055
H G QR + ++ + G+ ++V
Sbjct: 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327
Query: 1056 ATDVAGRGID-------IKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTK 1106
AT G++ ++ + Y + +Y GR GR G + G A+ K
Sbjct: 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387
Query: 1107 DDSHLFYDLKQMMISSP 1123
D + K+ + P
Sbjct: 388 RDREIAV--KRYIFGEP 402
Score = 78.3 bits (193), Expect = 2e-14
Identities = 75/437 (17%), Positives = 157/437 (35%), Gaps = 90/437 (20%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+G ++ + P R LA + E K+ +G+R + G ++
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG-- 113
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
C+I++ T + ++ NR + + +V+DE ++D LE + VT ++
Sbjct: 114 -DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI-HLLD---SEKRGATLE-ILVTKMR 167
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPA--------VERLARSYLRRPATVYI 1640
K + + +AT P + + RP +
Sbjct: 168 -----------------RMNKALRVIGLSATAPNVTEIAEWLDADYYVSDW--RPVPLVE 208
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
G + + T + + S + K ++L+E V++F + ++GA+ A L +
Sbjct: 209 GVLCEGTLELFDGAFSTSRRVKFEELVEECVAE-NGGVLVFESTRRGAEKTAVKLSAITA 267
Query: 1701 NACT------------------------------LHGGKGQEQRELALNSLKGGSKDILV 1730
H G QR + ++ + G+ ++V
Sbjct: 268 KYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVV 327
Query: 1731 ATDVAGRGID-------IKDVSMVINYDMAKSIEDYTHRIGRTGRAG--KEGLAVSFCTK 1781
AT G++ ++ + Y + +Y GR GR G + G A+ K
Sbjct: 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387
Query: 1782 DDSHLFYDLKQMMISSP 1798
D + K+ + P
Sbjct: 388 RDREIAV--KRYIFGEP 402
Score = 52.1 bits (125), Expect = 1e-06
Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------- 66
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+G ++ + P R LA + E K+ +G+R + G ++ C+I++
Sbjct: 67 --KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEHLG---DCDIIVT 120
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDE 146
T + ++ NR + + +V+DE
Sbjct: 121 TSEKADSLIRNRASWIKAVSCLVVDE 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 4e-14
Identities = 103/611 (16%), Positives = 188/611 (30%), Gaps = 179/611 (29%)
Query: 1272 KKRRVRRLNDRKFVFDWDAS--ED------TSVDYNSIYKERHQVQFFGRGNIAGIDIKA 1323
+ + + + + FV ++D +D + + + I + V R + +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLSK 74
Query: 1324 QKRDQSKFYGEMLEKRR---TEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTER 1380
Q+ KF E+L K +++ + E++ DR +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLY----------N 121
Query: 1381 DWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQN 1440
D ++F Y+++ P ++A +LE+ R A + +
Sbjct: 122 DNQVFA-KYNVSR-----LQPYLKLRQA-----LLEL-------------RPAKNVLID- 156
Query: 1441 RDIIGVAETGSGKT-LAF----------LLPLLV-WIQSLPKIARMEDADQGPYAIIMAP 1488
GV GSGKT +A + + W+ + + ++
Sbjct: 157 ----GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCNSPET-----VLEM 201
Query: 1489 TRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
++L QI+ SR + ++L + A RL+
Sbjct: 202 LQKLLYQIDPNWT-----------------SRSDHSSNIKLRIHSIQAELRRLL--KSKP 242
Query: 1549 YLVLNQCTYIVLDE-AD-RMIDMGFEPDVQ-KIL---EYMPVTN-LKPDTED-------- 1593
Y C +VL + + + F ++ KIL + VT+ L T
Sbjct: 243 Y---ENC-LLVLLNVQNAKAWNA-F--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 1594 ---AEDENK-LLANYNSKKKY---RQTVMFTATMPPAVERLARSYLRRPATV-YIGSVG- 1644
DE K LL Y + R+ + T P + +A S AT V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 1645 -KPTERIEQIVYILSEQDKRK--KLMEVLNRGVKKPVIIFV---NQKKGADV--LAKGLE 1696
K T IE + +L + RK + V P I+ +DV + L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 1697 KLG-------YNACTLHGG----KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS 1745
K + ++ K + + E AL+ +V + D
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALH-------RSIVDHYNIPKTFD----- 460
Query: 1746 MVINYDMAKSIED---YTHRIGR-TGRAGKEGLAVSFCTKDDSHLFYD---LKQMMI-SS 1797
+ D+ D Y+H IG F +F D L+Q + S
Sbjct: 461 ---SDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDS 511
Query: 1798 PVSTCPPELLN 1808
+LN
Sbjct: 512 TAWNASGSILN 522
Score = 64.5 bits (156), Expect = 3e-10
Identities = 98/655 (14%), Positives = 181/655 (27%), Gaps = 191/655 (29%)
Query: 894 MGFEPDVQ-----KILE-YMP--VTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATM 945
M FE IL + V N D +D +D K + SK++ +M
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSIL---SKEEIDHIIM----S 57
Query: 946 PPAVERLAR---SYLRRPATVY---IGSVGKP-----TERIEQIVYILSEQDKRKKLMEV 994
AV R + L + + + V + I + + +E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQR-QPSMMTRMYIEQ 115
Query: 995 LNRGVKKPVII---FVNQKKGADVLAKGLEKLGYNA-CTLHGGKGQEQRELALNSLKGGS 1050
+R + V++ + L + L +L + G G + +AL+ S
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--S 173
Query: 1051 KDILVATDVA------GRGIDIKDVSMVIN---YDMAK---SIEDYTHRIGRTGRAGKEG 1098
+ D + V ++ Y + S D++ I + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 1099 LAVSFCTK---------DD----SHL--FYDLK-QMMI-----------SSPVTGRAGKE 1131
L +K + F +L ++++ S+ T +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 1132 GLAVSFCTKDDS-HLFYDLKQMMISSPVSTCPPELLNHPDAQHKPGTVMMAGDRRSRSRS 1190
+++ T D+ L LK + P E+L P + + +
Sbjct: 293 HHSMTL-TPDEVKSLL--LK--YLDCRPQDLPREVL-----TTNPRRLSIIAES------ 336
Query: 1191 PARKRRSRSRDRDYDRRFKRKKSPQCEAQSS----------------RFSACS-LPRSHK 1233
RD + K C+ ++ F S P S
Sbjct: 337 ----------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 1234 -SSSLLSRY----SEQDPEE--KEL------NKDKEREGEAIKERYLGLVKKKRRVRRLN 1280
+ LLS + D +L K + +I YL L K L+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 1281 DRKFV--------FDWDASEDTSVD-YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKF 1331
R V FD D +D Y Y G
Sbjct: 447 -RSIVDHYNIPKTFDSDDLIPPYLDQY--FY------SHIG------------------- 478
Query: 1332 YGEMLEKRRTEAEKEQEKV----RLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFRE 1387
+ + E V R + K R + W+ L+ + + ++
Sbjct: 479 H-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS---GSILNTLQ--QLKFYK- 531
Query: 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD 1442
Y I DP ++ + +I E + ++ T + + I L D
Sbjct: 532 PY-ICDN-----DPKYERLVNAILDFLPKIEENLICSKYTDL----LRIALMAED 576
Score = 57.9 bits (139), Expect = 3e-08
Identities = 59/459 (12%), Positives = 121/459 (26%), Gaps = 159/459 (34%)
Query: 15 RQAIPIGLQNRDII---GVAETGSGKT-LAF----------LLPLLV-WIQSLPKIARME 59
RQA+ + L+ + GV GSGKT +A + + W+ +
Sbjct: 141 RQAL-LELRPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCN 193
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ ++ ++L QI+ SR + ++L +
Sbjct: 194 SPET-----VLEMLQKLLYQIDPNWT-----------------SRSDHSSNIKLRIHSIQ 231
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDE-AD-RMIDMGFEPDVQ-KILEYMPVTNLKPDTE 176
A RL+ Y C +VL + + + F ++ KIL +T T
Sbjct: 232 AELRRLL--KSKPY---ENC-LLVLLNVQNAKAWNA-F--NLSCKIL----LT-----TR 273
Query: 177 DAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMP-VTNLKPDT--EDAEDENKLLA 233
+ + L A + + T+ P ++ + + +P + N
Sbjct: 274 FKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 234 NYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDK 293
+ + ++ + + + K T IE + +L +
Sbjct: 331 S-----------IIAESIRDGLATW--DNWKHV------NCDKLTTIIESSLNVLEPAEY 371
Query: 294 RK--KLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNS 351
RK + V P +L + + + +N
Sbjct: 372 RKMFDRLSVFPPSAHIP----------TILL-----------SLIWFDVIKSDVMVVVNK 410
Query: 352 LKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLER 411
L S K+ S +
Sbjct: 411 L---------------HKYSLVEKQPKESTISIPS----------------------IYL 433
Query: 412 DRSREREREKRHHRR-------DRSKERDG--KDRREGY 441
+ + E E HR ++ + D + Y
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Score = 56.8 bits (136), Expect = 6e-08
Identities = 60/546 (10%), Positives = 153/546 (28%), Gaps = 155/546 (28%)
Query: 449 EASGSKHKSRDKEGYEPTEQMVISD------EEEDKGAAAKKEPLSLEELLAKKKAEEEA 502
E +++ +D E + + ++ K +K+E ++ ++ K A
Sbjct: 10 ETGEHQYQYKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEE---IDHIIMSKDAVSGT 64
Query: 503 RSK-PKFLTKEERAAEALRKRQAEVEEMRKK-----MEEERKK-RQEFTKEASFESKREN 555
L+K+E + VEE+ + M + + RQ + +R+
Sbjct: 65 LRLFWTLLSKQEEMVQKF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD- 117
Query: 556 FDARLRRDRE--KKKEDPEEKELNKDKEREGEAIKERYLGL---------------VKKK 598
RL D + K + K ++ E + + +
Sbjct: 118 ---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 599 RRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYG 658
+ +++ + +F W ++ N ++ ++ +
Sbjct: 175 KVQCKMDFK--IF-W-------LN-------------LKNCNSPETVLEMLQKLLYQIDP 211
Query: 659 EMLEK----RRTEAEKEQEKVRLKKVKKREEKQK--------WDDRHWTEKSLDE----- 701
+ + + L+++ K + + + + W + +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKIL 269
Query: 702 MTERDWRIFREDYSITIKGGKVPDPVRNWKEASL-PTEILEIIEKIGYAEPTPIQRQAIP 760
+T R ++ D+ + + +L P E+ ++ K P + R+ +
Sbjct: 270 LTTRFKQVT--DF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 761 IGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQ 820
+ II G W + + D+ I + L
Sbjct: 325 TNPRRLSIIA-ESIRDGLAT--------WDNW-----KHVNCDKLTTIIESS----LNVL 366
Query: 821 IEEETNKFGTPLGI--------RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLEN 872
E K L + +L + + +++ + +++ L
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSL-------------IWFDVIKSDVMVVVNKLHK 413
Query: 873 RYLVL---NQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY 929
LV + T + P + LE + ++ +Y
Sbjct: 414 YSLVEKQPKESTISI-------------PSIY--LEL-----KVKLENEYALHRSIVDHY 453
Query: 930 NSKKKY 935
N K +
Sbjct: 454 NIPKTF 459
Score = 46.4 bits (109), Expect = 1e-04
Identities = 61/445 (13%), Positives = 118/445 (26%), Gaps = 142/445 (31%)
Query: 357 KDILMAGDRRSRSR-------SPPRKRRSR----SRERDYD----RVRERDTDRSRDDRG 401
I+M+ D S + S + + +Y ++ S R
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 402 RDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEAS--GSKHKSRD 459
RDRL D K + R + + R+ R + G
Sbjct: 112 YIEQRDRLYNDNQVFA---KYNVSRLQPYLK----LRQALLELRPAKNVLIDG------- 157
Query: 460 KEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKF---LTKEERAA 516
+ G+ K ++L+ L+ K + F L
Sbjct: 158 ---------V--------LGSG--KTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPE 196
Query: 517 EALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKEL 576
L Q + +++ R + + + A LRR L
Sbjct: 197 TVLEMLQK----LLYQIDPNWTSRSDHSSNIKLRI--HSIQAELRR-------------L 237
Query: 577 NKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFD---WDA----------SEDTSV-D 622
K K E L LV L + V + W+A + V D
Sbjct: 238 LKSKPY------ENCL-LV--------LLN---VQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 623 YNSIYKERHQVQFFGRGNIAGIDIKAQKRDQ-SKFYGEMLEKRRTEAEKEQ-EKVRLKKV 680
+ S H + + + K+ + E ++ +
Sbjct: 280 FLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 681 KKREEKQKWDDRHWT-----------EKSLDEMTERDWR-------IFREDYSITIKGGK 722
R+ WD +W E SL+ + ++R +F
Sbjct: 336 SIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------H 386
Query: 723 VPDPV--RNWKEASLPTEILEIIEK 745
+P + W + + ++++ ++ K
Sbjct: 387 IPTILLSLIWFD-VIKSDVMVVVNK 410
Score = 34.8 bits (79), Expect = 0.30
Identities = 47/357 (13%), Positives = 97/357 (27%), Gaps = 117/357 (32%)
Query: 20 IGLQNRDIIGVAETGSGKTLAFLLPLLV-WI----QSLPKIARMEDADQG-PYAI--IMA 71
+ I + T + LL+ ++ Q LP + P + I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAE 335
Query: 72 PTRELAQQIEE----ETNKFGT----------PLGIRTV---LVVGGLSREEQGFR---- 110
R+ + +K T P R + L V F
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---------FPPSAH 386
Query: 111 -----L-RLGCEIVIATPGRLIDVLENRYLVL---NQCTYIVLDEADRMIDMGFEPDVQK 161
L + +++ + +++ L LV + T + P +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------------PSIY- 432
Query: 162 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAK---ILEYMP--VT 216
LE + ++ +YN K + +PP ++ +
Sbjct: 433 -LEL-----KVKLENEYALHRSIVDHYNIPKTFDS----DDLIPPYLDQYFYSHIGHHLK 482
Query: 217 NLKPDTEDAE------D----ENKLLA---NYNSK----------KKYRQTVMFTATMPP 253
N++ D E K+ +N+ K Y+ + P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDP 539
Query: 254 AVERLARSY---LRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKK 307
ERL + L + I S + +I + + + E ++ V++
Sbjct: 540 KYERLVNAILDFLPKIEENLICS---KYTDLLRIAL----MAEDEAIFEEAHKQVQR 589
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 75.0 bits (184), Expect = 1e-13
Identities = 59/373 (15%), Positives = 98/373 (26%), Gaps = 98/373 (26%)
Query: 741 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 800
E +E + + + A TGSGK+
Sbjct: 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA------------- 254
Query: 801 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 860
QG +++ P+ +K GI + G + G +
Sbjct: 255 --AQGYKVLVLNPSVAATLGFGAYMSK---AHGIDPNIRTGVRTI-------TTGAPVTY 302
Query: 861 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 920
+T G+ L + I+ DE D + +L+
Sbjct: 303 STYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAE------------ 346
Query: 921 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 980
++ AT P P I V
Sbjct: 347 -------------TAGARLVVLATATPPGSVTV------PHPN-IEEVALSNTGEIPF-- 384
Query: 981 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1040
+ +E + G +IF + KK D LA L LG NA + G
Sbjct: 385 -----YGKAIPIEAIRGGRH---LIFCHSKKKCDELAAKLSGLGINAVAYYRG------- 429
Query: 1041 LALNSLKGGSKDILVATDVAGRG--IDIK-------DVSMVINYDMAK-----------S 1080
L ++ + ++VATD G D V+ +++ +
Sbjct: 430 LDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1081 IEDYTHRIGRTGR 1093
+ R GRTGR
Sbjct: 490 AVSRSQRRGRTGR 502
Score = 75.0 bits (184), Expect = 1e-13
Identities = 59/373 (15%), Positives = 98/373 (26%), Gaps = 98/373 (26%)
Query: 1416 EIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 1475
E +E + + + A TGSGK+
Sbjct: 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA------------- 254
Query: 1476 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 1535
QG +++ P+ +K GI + G + G +
Sbjct: 255 --AQGYKVLVLNPSVAATLGFGAYMSK---AHGIDPNIRTGVRTI-------TTGAPVTY 302
Query: 1536 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAE 1595
+T G+ L + I+ DE D + +L+
Sbjct: 303 STYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAE------------ 346
Query: 1596 DENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVY 1655
++ AT P P I V
Sbjct: 347 -------------TAGARLVVLATATPPGSVTV------PHPN-IEEVALSNTGEIPF-- 384
Query: 1656 ILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 1715
+ +E + G +IF + KK D LA L LG NA + G
Sbjct: 385 -----YGKAIPIEAIRGGRH---LIFCHSKKKCDELAAKLSGLGINAVAYYRG------- 429
Query: 1716 LALNSLKGGSKDILVATDVAGRG--IDIK-------DVSMVINYDMAK-----------S 1755
L ++ + ++VATD G D V+ +++ +
Sbjct: 430 LDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQD 489
Query: 1756 IEDYTHRIGRTGR 1768
+ R GRTGR
Sbjct: 490 AVSRSQRRGRTGR 502
Score = 41.5 bits (97), Expect = 0.003
Identities = 23/167 (13%), Positives = 43/167 (25%), Gaps = 29/167 (17%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
+E + + + A TGSGK+
Sbjct: 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYA-------------- 254
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
QG +++ P+ +K GI + G + G + +
Sbjct: 255 -AQGYKVLVLNPSVAATLGFGAYMSK---AHGIDPNIRTGVRTI-------TTGAPVTYS 303
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
T G+ L + I+ DE D + +L+
Sbjct: 304 TYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAE 346
Score = 30.4 bits (68), Expect = 7.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 310 IIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
+IF + KK D LA L LG NA + G
Sbjct: 400 LIFCHSKKKCDELAAKLSGLGINAVAYYRG 429
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase;
1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19
c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 73.7 bits (182), Expect = 3e-13
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 936 RQTVMFTATMPPAV-----ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 990
+ TAT L L P + I S +P R ++ + +
Sbjct: 175 LPFMALTATADDTTRQDIVRLLG---LNDPL-IQISSFDRPNIRYM----LMEKFKPLDQ 226
Query: 991 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1050
LM + K II+ N + + A L+ G +A H G R +
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 1051 KDILVATDVA-GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1109
I+VAT VA G GI+ +V V+++D+ ++IE Y GR GR G A+
Sbjct: 287 LQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM-------- 337
Query: 1110 HLFYDLK 1116
LFYD
Sbjct: 338 -LFYDPA 343
Score = 73.7 bits (182), Expect = 3e-13
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 1611 RQTVMFTATMPPAV-----ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 1665
+ TAT L L P + I S +P R ++ + +
Sbjct: 175 LPFMALTATADDTTRQDIVRLLG---LNDPL-IQISSFDRPNIRYM----LMEKFKPLDQ 226
Query: 1666 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGS 1725
LM + K II+ N + + A L+ G +A H G R +
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD 286
Query: 1726 KDILVATDVA-GRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDS 1784
I+VAT VA G GI+ +V V+++D+ ++IE Y GR GR G A+
Sbjct: 287 LQIVVAT-VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM-------- 337
Query: 1785 HLFYDLK 1791
LFYD
Sbjct: 338 -LFYDPA 343
Score = 36.7 bits (86), Expect = 0.073
Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 242 RQTVMFTATMPPAV-----ERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKK 296
+ TAT L L P + I S +P R ++ + +
Sbjct: 175 LPFMALTATADDTTRQDIVRLLG---LNDPL-IQISSFDRPNIRYM----LMEKFKPLDQ 226
Query: 297 LMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
LM + K II+ N + + A L+ G +A H G R
Sbjct: 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA 276
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 67
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 68 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 126
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 127 DVLENR------YLVLNQCTYIVLDEA 147
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 808
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 809 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 867
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 868 DVLENR------YLVLNQCTYIVLDEA 888
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
Score = 66.8 bits (163), Expect = 4e-12
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYA 1483
+ P Q + L+ ++II TGSGKT A + + + + + A +
Sbjct: 33 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYI-----AKDH--LDKKKKASEPGKV 85
Query: 1484 IIMAPTRELA-QQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLI 1542
I++ L Q +E F R + + G + + C+I+I+T L
Sbjct: 86 IVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILE 144
Query: 1543 DVLENR------YLVLNQCTYIVLDEA 1563
+ L N + L+ + I++DE
Sbjct: 145 NSLLNLENGEDAGVQLSDFSLIIIDEC 171
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 67.5 bits (165), Expect = 3e-11
Identities = 85/466 (18%), Positives = 157/466 (33%), Gaps = 115/466 (24%)
Query: 724 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAF 782
P+ + K LP+ ++EII+K G + P Q +A+ GL + ++ + TGSGKTL
Sbjct: 7 WMPIEDLK---LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ I + G AI + P R L + + +G + + G
Sbjct: 64 EMG----------IISFLLKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGD 111
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQ 901
++ + +I+I T +L D L LN+ Y VLDE + +P+
Sbjct: 112 YDTDDAWLK---NYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDE----LHYLNDPERG 163
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR------- 954
++E + + K R + +AT+ + +A+
Sbjct: 164 PVVESV-TI---------------------RAKRRNLLALSATISNYKQ-IAKWLGAEPV 200
Query: 955 --SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV------KKPVIIF 1006
++ RP + G + ++ E V K+ + + V++F
Sbjct: 201 ATNW--RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVF 258
Query: 1007 VNQKKG----ADVLAKGLEKLGYNACTL-------------------------------- 1030
N +K A +A + + + L
Sbjct: 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318
Query: 1031 HGGKGQEQRELALNSLKGGSKDILVATD------------VAGRGIDIKDVSMVINYDMA 1078
H G + R+L + ++VAT V I + + YD
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378
Query: 1079 KSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYDLKQMMISSP 1123
I +Y GR GR G + + S +D + K+ ++S
Sbjct: 379 -PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDV 423
Score = 67.5 bits (165), Expect = 3e-11
Identities = 85/466 (18%), Positives = 157/466 (33%), Gaps = 115/466 (24%)
Query: 1399 PDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAF 1457
P+ + K LP+ ++EII+K G + P Q +A+ GL + ++ + TGSGKTL
Sbjct: 7 WMPIEDLK---LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ I + G AI + P R L + + +G + + G
Sbjct: 64 EMG----------IISFLLKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGD 111
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYL-VLNQCTYIVLDEADRMIDMGFEPDVQ 1576
++ + +I+I T +L D L LN+ Y VLDE + +P+
Sbjct: 112 YDTDDAWLK---NYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDE----LHYLNDPERG 163
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR------- 1629
++E + + K R + +AT+ + +A+
Sbjct: 164 PVVESV-TI---------------------RAKRRNLLALSATISNYKQ-IAKWLGAEPV 200
Query: 1630 --SYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV------KKPVIIF 1681
++ RP + G + ++ E V K+ + + V++F
Sbjct: 201 ATNW--RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVF 258
Query: 1682 VNQKKG----ADVLAKGLEKLGYNACTL-------------------------------- 1705
N +K A +A + + + L
Sbjct: 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318
Query: 1706 HGGKGQEQRELALNSLKGGSKDILVATD------------VAGRGIDIKDVSMVINYDMA 1753
H G + R+L + ++VAT V I + + YD
Sbjct: 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378
Query: 1754 KSIEDYTHRIGRTGRAGKEGLAVSF-CTKDDSHLFYDLKQMMISSP 1798
I +Y GR GR G + + S +D + K+ ++S
Sbjct: 379 -PIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDV 423
Score = 50.9 bits (122), Expect = 4e-06
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRD-IIGVAETGSGKTLAFLLPLLVWIQSLPKIARME 59
II+K G + P Q +A+ GL + ++ + TGSGKTL + I
Sbjct: 22 IIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG----------IISFL 71
Query: 60 DADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVI 119
+ G AI + P R L + + +G + + G ++ + +I+I
Sbjct: 72 LKNGGK-AIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAWLK---NYDIII 126
Query: 120 ATPGRLIDVLENRYL-VLNQCTYIVLDE 146
T +L D L LN+ Y VLDE
Sbjct: 127 TTYEKL-DSLWRHRPEWLNEVNYFVLDE 153
Score = 31.6 bits (72), Expect = 2.6
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 237 SKKKYRQTVMFTATMPPAVERLAR---------SYLRRPATVYIGSVGKPTERIEQIVYI 287
+ K R + +AT+ + +A+ ++ RP + G + ++ E V
Sbjct: 171 IRAKRRNLLALSATISNYKQ-IAKWLGAEPVATNW--RPVPLIEGVIYPERKKKEYNVIF 227
Query: 288 LSEQDKRKKLMEVLNRGV------KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 341
K+ + + V++F N +K A+ A +
Sbjct: 228 KDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALS 287
Query: 342 QEQRELALNSLKGGSKD 358
+ ++L G +
Sbjct: 288 EILKQLDDIEEGGSDEK 304
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 65.6 bits (159), Expect = 7e-11
Identities = 21/115 (18%), Positives = 38/115 (33%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
RR R R + + D + G D E+ R R+RER + H
Sbjct: 299 ARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSH 358
Query: 424 HRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDK 478
+ +DR +R E + + ++R G + + ++ D
Sbjct: 359 RSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDM 413
Score = 65.3 bits (158), Expect = 8e-11
Identities = 26/112 (23%), Positives = 40/112 (35%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
+GG D+ + D + RD DR R R R +RD
Sbjct: 310 RGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRD 369
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
R R+R+RE + R + RD G + E + S+ + EG +
Sbjct: 370 RDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGD 421
Score = 63.3 bits (153), Expect = 4e-10
Identities = 18/106 (16%), Positives = 32/106 (30%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R R+R+ R D + + D G + D E+ R++
Sbjct: 292 SSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRD 351
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQ 468
RR + + R R+R E G + R ++
Sbjct: 352 RERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGG 397
Score = 63.3 bits (153), Expect = 4e-10
Identities = 18/105 (17%), Positives = 33/105 (31%)
Query: 364 DRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRH 423
+R R R + R + D ++ R+R+RE+R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356
Query: 424 HRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQ 468
R + R +DR RE + E + + + G +
Sbjct: 357 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDN 401
Score = 62.9 bits (152), Expect = 5e-10
Identities = 21/117 (17%), Positives = 35/117 (29%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R R RK R D E D + D + + R+R++
Sbjct: 294 RSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRE 353
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKG 479
R RS+ +DR R+R + + RD+ Q + +
Sbjct: 354 RRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDS 410
Score = 62.9 bits (152), Expect = 5e-10
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 15/230 (6%)
Query: 363 GDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKR 422
R P R R R+R+ +R +R R R RDR R RSR++E +R
Sbjct: 217 SRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRR 276
Query: 423 HHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAA 482
R + K+RD K R R R E + + + EP+E ++
Sbjct: 277 SRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPP---- 332
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
+ + + K ++ + R + + + + +R+ ++
Sbjct: 333 -----------GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRG 381
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYL 592
+ E D + + + A + YL
Sbjct: 382 ERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYL 431
Score = 60.2 bits (145), Expect = 4e-09
Identities = 28/205 (13%), Positives = 52/205 (25%), Gaps = 1/205 (0%)
Query: 353 KGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERD 412
R R + + R R R R R R + + R ++D
Sbjct: 226 SPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKD 285
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKH-KSRDKEGYEPTEQMVI 471
R R+R + R R +ER + R G E + G + +
Sbjct: 286 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE 345
Query: 472 SDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRK 531
+ D+ + + + K E EA + +
Sbjct: 346 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG 405
Query: 532 KMEEERKKRQEFTKEASFESKRENF 556
+ R E + + +
Sbjct: 406 LGNDSRDMYMESEGGDGYLAPENGY 430
Score = 57.6 bits (138), Expect = 2e-08
Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 1/224 (0%)
Query: 330 GYNACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVR 389
G + + + + + + ++ R + R R R R R R +
Sbjct: 212 GRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDK 271
Query: 390 ERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEE 449
E + +DRDR R RSRER R +R + + ++
Sbjct: 272 EERRRSRERSKDKDRDRKR-RSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDG 330
Query: 450 ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFL 509
G E + ++ + ++ E S+
Sbjct: 331 PPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRD 390
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKR 553
+ + R E E + +
Sbjct: 391 EARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEA 434
Score = 33.7 bits (76), Expect = 0.59
Identities = 17/83 (20%), Positives = 23/83 (27%)
Query: 1183 DRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQCEAQSSRFSACSLPRSHKSSSLLSRYS 1242
D P + RD DR +R + E + R R HK S
Sbjct: 329 DGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERG 388
Query: 1243 EQDPEEKELNKDKEREGEAIKER 1265
+ +D EG R
Sbjct: 389 RDEARGGGGGQDNGLEGLGNDSR 411
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 64.8 bits (158), Expect = 1e-10
Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 98/411 (23%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP---GRL 866
I+ PT LA+Q +E FG V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIFG----EEYVGEFSGRIKELKP--------LTVSTYDSAYVN 185
Query: 867 IDVLENRY-------------------LVLNQCTYIV--------LDEADRMIDMGFEPD 899
+ L NR+ ++ + + D ++
Sbjct: 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGK 245
Query: 900 VQKI------------LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 947
V ++ + + E E E + K++ + T
Sbjct: 246 VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR----EKVYKQFLRARGITLRRAE 301
Query: 948 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1007
++ + + RI + ++K +KL E+L R K +IIF
Sbjct: 302 DFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREILERHRKDKIIIFT 356
Query: 1008 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1067
+ ++K +E+RE L + G +V++ V GID+
Sbjct: 357 RHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411
Query: 1068 DVSMVINYDMA---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1115
D ++ + + S +Y R+GR R +G K ++ Y+L
Sbjct: 412 DANVGV---IMSGSGSAREYIQRLGRILRP-SKG-------KKEAV-LYEL 450
Score = 64.8 bits (158), Expect = 1e-10
Identities = 68/411 (16%), Positives = 130/411 (31%), Gaps = 98/411 (23%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP---GRL 1541
I+ PT LA+Q +E FG V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIFG----EEYVGEFSGRIKELKP--------LTVSTYDSAYVN 185
Query: 1542 IDVLENRY-------------------LVLNQCTYIV--------LDEADRMIDMGFEPD 1574
+ L NR+ ++ + + D ++
Sbjct: 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGK 245
Query: 1575 VQKI------------LEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 1622
V ++ + + E E E + K++ + T
Sbjct: 246 VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKR----EKVYKQFLRARGITLRRAE 301
Query: 1623 AVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFV 1682
++ + + RI + ++K +KL E+L R K +IIF
Sbjct: 302 DFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREILERHRKDKIIIFT 356
Query: 1683 NQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIK 1742
+ ++K +E+RE L + G +V++ V GID+
Sbjct: 357 RHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVP 411
Query: 1743 DVSMVINYDMA---KSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDL 1790
D ++ + + S +Y R+GR R +G K ++ Y+L
Sbjct: 412 DANVGV---IMSGSGSAREYIQRLGRILRP-SKG-------KKEAV-LYEL 450
Score = 52.1 bits (125), Expect = 1e-06
Identities = 59/364 (16%), Positives = 112/364 (30%), Gaps = 62/364 (17%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
Q +A+ L ++ V TGSGKT +A + + +
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA-------------MAAINELSTP--TL 137
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
I+ PT LA+Q +E F G V G +E + + ++T
Sbjct: 138 IVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKELKP--------LTVSTYDSA--- 182
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV--------TNLKPDTEDAED 180
N + N+ ++ DE + + +I + T + ED
Sbjct: 183 YVNAEKLGNRFMLLIFDEVHHLPAESY----VQIAQMSIAPFRLGLTAT---FERED--G 233
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
+++L K + A AK L D ++ K+
Sbjct: 234 RHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEK-----REKVYKQ 288
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEV 300
+ + T ++ + + RI + ++K +KL E+
Sbjct: 289 FLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRI-----AFNSKNKIRKLREI 343
Query: 301 LNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDIL 360
L R K +IIF + ++K +E+RE L + G +
Sbjct: 344 LERHRKDKIIIFTRHNELVYRISKVFLIPAI-----THRTSREEREEILEGFRTGRFRAI 398
Query: 361 MAGD 364
++
Sbjct: 399 VSSQ 402
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair,
nucleotide-binding, DNA-binding, polymorphism, nuclear
protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB:
2wwy_A*
Length = 591
Score = 64.2 bits (157), Expect = 2e-10
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA-GR 1062
II+ +K ++ + L+ LG +A H E + ++VAT VA G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGM 329
Query: 1063 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK-----Q 1117
GID DV VI++ M+KS+E+Y GR GR + + L+Y
Sbjct: 330 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI---------LYYGFGDIFRIS 380
Query: 1118 MMISSPVTGRA 1128
M+ G+
Sbjct: 381 SMVVMENVGQQ 391
Score = 64.2 bits (157), Expect = 2e-10
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA-GR 1737
II+ +K ++ + L+ LG +A H E + ++VAT VA G
Sbjct: 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVAT-VAFGM 329
Query: 1738 GIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLK 1791
GID DV VI++ M+KS+E+Y GR GR + + L+Y
Sbjct: 330 GIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI---------LYYGFG 374
Score = 30.3 bits (69), Expect = 6.9
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 728 RNWKEASLP--TEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 784
W + P ++ +I++ + + P+Q + I + + +++ V TG GK+L + L
Sbjct: 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQL 78
Query: 785 PLLV 788
P L
Sbjct: 79 PALC 82
Score = 30.3 bits (69), Expect = 6.9
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 1403 RNWKEASLP--TEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLL 1459
W + P ++ +I++ + + P+Q + I + + +++ V TG GK+L + L
Sbjct: 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQL 78
Query: 1460 PLLV 1463
P L
Sbjct: 79 PALC 82
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase,
T4-bacteriophage, recombination, hydrolase; 2.70A
{Enterobacteria phage T4}
Length = 510
Score = 63.8 bits (154), Expect = 3e-10
Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 21/387 (5%)
Query: 713 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 772
Y I + K+ LEI EP Q+ A+ GL NR I
Sbjct: 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query: 773 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 832
T +G++L L L ++ +I+ PT L Q+ ++ +
Sbjct: 136 PTSAGRSLIQAL--LARYYLENYEGKI---------LIIVPTTALTTQMADDFVDYRLFS 184
Query: 833 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 892
+ GG + + + +V+ T ++ +Q ++ DE
Sbjct: 185 HAMIKKIGGG---ASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT 238
Query: 893 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY--NSKKKYRQTVMFTATMPPAVE 950
+ + M L D + K + + ++
Sbjct: 239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298
Query: 951 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1010
+ E I+ I + KL L + + +
Sbjct: 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQK-DENAFVMFKHV 357
Query: 1011 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT-DVAGRGIDIKDV 1069
+ ++ + G E R + + G I+VA+ V GI +K++
Sbjct: 358 SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417
Query: 1070 SMVINYDMAKSIEDYTHRIGRTGRAGK 1096
V+ KS IGR R
Sbjct: 418 HHVVLAHGVKSKIIVLQTIGRVLRKHG 444
Score = 63.8 bits (154), Expect = 3e-10
Identities = 60/387 (15%), Positives = 111/387 (28%), Gaps = 21/387 (5%)
Query: 1388 DYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVA 1447
Y I + K+ LEI EP Q+ A+ GL NR I
Sbjct: 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query: 1448 ETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPL 1507
T +G++L L L ++ +I+ PT L Q+ ++ +
Sbjct: 136 PTSAGRSLIQAL--LARYYLENYEGKI---------LIIVPTTALTTQMADDFVDYRLFS 184
Query: 1508 GIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMI 1567
+ GG + + + +V+ T ++ +Q ++ DE
Sbjct: 185 HAMIKKIGGG---ASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT 238
Query: 1568 DMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANY--NSKKKYRQTVMFTATMPPAVE 1625
+ + M L D + K + + ++
Sbjct: 239 GKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298
Query: 1626 RLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQK 1685
+ E I+ I + KL L + + +
Sbjct: 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQK-DENAFVMFKHV 357
Query: 1686 KGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT-DVAGRGIDIKDV 1744
+ ++ + G E R + + G I+VA+ V GI +K++
Sbjct: 358 SHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNL 417
Query: 1745 SMVINYDMAKSIEDYTHRIGRTGRAGK 1771
V+ KS IGR R
Sbjct: 418 HHVVLAHGVKSKIIVLQTIGRVLRKHG 444
Score = 31.8 bits (71), Expect = 2.5
Identities = 44/361 (12%), Positives = 98/361 (27%), Gaps = 63/361 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
EP Q+ A+ GL NR I T +G++L L L ++
Sbjct: 106 YSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQAL--LARYYLENYEGKI--- 160
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+I+ PT L Q+ ++ + + GG + + + +V+ T
Sbjct: 161 ------LIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG---ASKDDKYKNDAPVVVGT 211
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
++ +Q ++ DE + + M L D +
Sbjct: 212 WQTVVK---QPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKAN 268
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
+ + T+ + + + + ++ D Y + K
Sbjct: 269 IMQYVGMFGEIFK---PVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKI 325
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVL 301
I + K + I ++ L+++D+
Sbjct: 326 -----------------------------ITGLSKRNKWIAKLAIKLAQKDEN------- 349
Query: 302 NRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILM 361
+ + ++ + G E R + + G I++
Sbjct: 350 -------AFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIV 402
Query: 362 A 362
A
Sbjct: 403 A 403
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 62.2 bits (151), Expect = 2e-09
Identities = 48/325 (14%), Positives = 121/325 (37%), Gaps = 22/325 (6%)
Query: 387 RVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERR 446
+V ++ + D R ++R ++ + +E E++H + K + +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 447 EEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA--KKKAEEEARS 504
EE + + E +EEE++ + E +++ + +++ EEE +
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 505 KPKFLTKEERAAEA----LRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARL 560
+ K L E+ A+ + +E+ K+ +ERK +E + + N
Sbjct: 971 RQK-LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT-----TNLAEEE 1024
Query: 561 RRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTS 620
+ + K + + + + E + ++ L K KR++ + + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 621 VDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKV 680
+ K+ ++Q D +QK + K E LE ++ +++ E + +
Sbjct: 1085 ELKAQLAKKEEELQ---AALARLEDETSQKNNALKKIRE-LESHISDLQEDLESEKAARN 1140
Query: 681 KKREEKQKWDDRHWTEKSLDEMTER 705
K ++K+ + L+ +
Sbjct: 1141 KAEKQKRD------LSEELEALKTE 1159
Score = 52.1 bits (125), Expect = 2e-06
Identities = 37/244 (15%), Positives = 97/244 (39%), Gaps = 16/244 (6%)
Query: 365 RRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH 424
++ + + + + E + R R + ++ + + + E E+
Sbjct: 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL-AAKKQELEEILHEMEARIEEEEERS 943
Query: 425 RRDRSKERDGKDRREGYRRERREEEASGSK----HKSRDKEGYEPTEQMVISDEEEDKGA 480
++ +++++ + + + EEEA+ K + D + + + ++I +++ +K
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 481 AAKKEPLSLEELLAKKKAE-EEARSKPKFLTKEERAAEALRKR-QAEVEEMRK-KMEEER 537
+K LEE ++ E K K LTK + E++ + +++ K + E E+
Sbjct: 1004 KERKL---LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 538 KKRQEFTKEASFESKRENFDARLRRDREK-KKEDPEEKELNKDKEREGEAIKERYLGLVK 596
KR+ + + + A++ + + K++ E + E E + +K
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE----TSQKNNALK 1116
Query: 597 KKRR 600
K R
Sbjct: 1117 KIRE 1120
Score = 46.4 bits (110), Expect = 1e-04
Identities = 28/207 (13%), Positives = 83/207 (40%), Gaps = 14/207 (6%)
Query: 379 RSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRR 438
+ E D + +++ +++ + + L + + E E+ K + E +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
++E + + + + E S + ++ A + + L+ LAKK+
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGE----------SSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 499 E-EEARSKPKFLTKE-ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENF 556
E + A ++ + T + A + +R+ ++ + ++++ +E E+ R + K+ + E
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR-DLSEELE 1154
Query: 557 DARLRRDREKKKEDPEEKELNKDKERE 583
+ + + ++EL ++
Sbjct: 1155 ALKTELE-DTLDTTATQQELRGSDYKD 1180
Score = 37.9 bits (88), Expect = 0.045
Identities = 20/168 (11%), Positives = 61/168 (36%), Gaps = 8/168 (4%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
+ R + E+ + ++ + LE +E + + + R E +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA 494
D E + + ++ +++E ++ ++E + A K+ LE ++
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARL---EDETSQKNNALKKIRELESHIS 1126
Query: 495 KKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
+ + E+ + ++++ R E+E ++ ++E+
Sbjct: 1127 DLQEDLESEKAARNKAEKQK-----RDLSEELEALKTELEDTLDTTAT 1169
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 60.8 bits (146), Expect = 4e-09
Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 13/241 (5%)
Query: 659 EMLEKRRTEAEKE----QEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY 714
L + ++KE ++ L + WD R K +D D +
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS-EMTDASEDCLEA 212
Query: 715 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 774
S+T PD + S I + + Q + + ++ + A T
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPT 272
Query: 775 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 834
GSGKT +L Q++P + + +A + +Q + G
Sbjct: 273 GSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325
Query: 835 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 893
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385
Query: 894 M 894
Sbjct: 386 N 386
Score = 60.8 bits (146), Expect = 4e-09
Identities = 41/241 (17%), Positives = 79/241 (32%), Gaps = 13/241 (5%)
Query: 1334 EMLEKRRTEAEKE----QEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY 1389
L + ++KE ++ L + WD R K +D D +
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDS-EMTDASEDCLEA 212
Query: 1390 SITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAET 1449
S+T PD + S I + + Q + + ++ + A T
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPT 272
Query: 1450 GSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGI 1509
GSGKT +L Q++P + + +A + +Q + G
Sbjct: 273 GSGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325
Query: 1510 RTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMID 1568
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385
Query: 1569 M 1569
Sbjct: 386 N 386
Score = 53.8 bits (128), Expect = 5e-07
Identities = 46/357 (12%), Positives = 105/357 (29%), Gaps = 32/357 (8%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L Q++P + +
Sbjct: 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVV 300
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 301 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 360
Query: 129 LENRYLV-LNQCTYIVLDEADRMIDMGFE------------------PDVQKILEYMPVT 169
E+ L L+ T ++ DE P + + + V
Sbjct: 361 FEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
Query: 170 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDEN 229
N K E E L + + + + T ++ +M + N
Sbjct: 421 NAKNIEETIEHICSLCSYLDIQA------ISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474
Query: 230 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 289
A ++ + +M T + + ++ + V + R+ Q+
Sbjct: 475 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEE 534
Query: 290 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 346
E + L K + +++ L + N + ++
Sbjct: 535 ESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT 591
Score = 51.5 bits (122), Expect = 3e-06
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 986 DKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL------------GYNACT 1029
K ++L+ +L+ + ++F + L K +E+ G
Sbjct: 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672
Query: 1030 LHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1088
G ++ L++ K +L+AT VA GIDI ++V+ Y+ + ++
Sbjct: 673 QTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Query: 1089 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
GR GRA + +K + +
Sbjct: 733 GR-GRA-AGSKCILVTSKTEVVENEKCNR 759
Score = 51.5 bits (122), Expect = 3e-06
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 19/149 (12%)
Query: 1661 DKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL------------GYNACT 1704
K ++L+ +L+ + ++F + L K +E+ G
Sbjct: 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRD 672
Query: 1705 LHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRI 1763
G ++ L++ K +L+AT VA GIDI ++V+ Y+ + ++
Sbjct: 673 QTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732
Query: 1764 GRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
GR GRA + +K + +
Sbjct: 733 GR-GRA-AGSKCILVTSKTEVVENEKCNR 759
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 60.4 bits (147), Expect = 6e-09
Identities = 22/210 (10%), Positives = 66/210 (31%), Gaps = 15/210 (7%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
++ PP+ + E Y+ ++ + R+ E D + +
Sbjct: 811 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 870
Query: 426 RDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKE 485
+ + + ++ ++ ++ + K + S+E D A + +
Sbjct: 871 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS------VYLGSNETGDSITAVQAK 924
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
+LE + ++ E + A+ V E+ ++ + + +
Sbjct: 925 LKNLEAFDGECQSLEGQSNS----DLLSILAQLTELNYNGVPELTERKDTFFAQ-----Q 975
Query: 546 EASFESKRENFDARLRRDREKKKEDPEEKE 575
+S E + L + E+ ++ +
Sbjct: 976 WTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 58.0 bits (139), Expect = 2e-08
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 985 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1032
+D L E + + I+FV + D L K +E+ G
Sbjct: 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRAT 433
Query: 1033 GKGQ-EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q+ + G +IL+AT VA GIDI + ++VI Y+ ++ GR
Sbjct: 434 GMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR- 492
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
GRA ++ + D +
Sbjct: 493 GRA-RDSKCFLLTSSADVIEKEKANMI 518
Score = 58.0 bits (139), Expect = 2e-08
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1707
+D L E + + I+FV + D L K +E+ G
Sbjct: 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRAT 433
Query: 1708 GKGQ-EQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q+ + G +IL+AT VA GIDI + ++VI Y+ ++ GR
Sbjct: 434 GMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR- 492
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
GRA ++ + D +
Sbjct: 493 GRA-RDSKCFLLTSSADVIEKEKANMI 518
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 14 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 73
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 74 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 132
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 133 YLV-LNQCTYIVLDEADRM 150
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 755 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 815 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 873
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 874 YLV-LNQCTYIVLDEADRM 891
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
Score = 54.1 bits (129), Expect = 3e-07
Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 1430 QRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489
Q + + ++ I A TG GKT LL + Q + A
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPCGQKGKVVFFANQ 61
Query: 1490 REL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENR 1548
+ QQ + F G + G S + +I+I TP L++ L N
Sbjct: 62 IPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG 120
Query: 1549 YLV-LNQCTYIVLDEADRM 1566
+ L+ T ++ DE
Sbjct: 121 AIPSLSVFTLMIFDECHNT 139
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 57.3 bits (137), Expect = 4e-08
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 11/238 (4%)
Query: 659 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY---S 715
L + ++KE L+ + + + + + + ED S
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEAS 213
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+T PD + S I + + Q + + ++ + A TG
Sbjct: 214 MTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTG 273
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
SGKT +L Q++P + + +A + +Q + G
Sbjct: 274 SGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMI 892
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384
Score = 57.3 bits (137), Expect = 4e-08
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 11/238 (4%)
Query: 1334 EMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWRIFREDY---S 1390
L + ++KE L+ + + + + + + ED S
Sbjct: 154 TKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIREDNAKDVDSEMTDASEDCLEAS 213
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+T PD + S I + + Q + + ++ + A TG
Sbjct: 214 MTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTG 273
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
SGKT +L Q++P + + +A + +Q + G
Sbjct: 274 SGKTFVSILICEHHFQNMPA-------GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV-LNQCTYIVLDEADRMI 1567
+ G ++ +I++ TP L++ E+ L L+ T ++ DE
Sbjct: 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT 384
Score = 55.7 bits (133), Expect = 1e-07
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 988 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKG 1035
L + + ++F + L K +E+ G G
Sbjct: 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 678
Query: 1036 QEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
++ L++ K +L+AT VA GIDI ++V+ Y+ + ++ GR GRA
Sbjct: 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737
Query: 1095 GKEGLAVSFCTKDDSHLFYDLKQ 1117
+ +K + +
Sbjct: 738 -AGSKCILVTSKTEVVENEKCNR 759
Score = 55.7 bits (133), Expect = 1e-07
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 1663 RKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHGGKG 1710
L + + ++F + L K +E+ G G
Sbjct: 619 VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT 678
Query: 1711 QEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
++ L++ K +L+AT VA GIDI ++V+ Y+ + ++ GR GRA
Sbjct: 679 LPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQ 1792
+ +K + +
Sbjct: 738 -AGSKCILVTSKTEVVENEKCNR 759
Score = 50.3 bits (119), Expect = 5e-06
Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L Q++P + +
Sbjct: 248 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA-------GRKAKVV 300
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 301 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 360
Query: 129 LENRYLV-LNQCTYIVLDEADRMI 151
E+ L L+ T ++ DE
Sbjct: 361 FEDGTLTSLSIFTLMIFDECHNTT 384
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 57.4 bits (139), Expect = 4e-08
Identities = 65/352 (18%), Positives = 122/352 (34%), Gaps = 56/352 (15%)
Query: 726 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP 785
+ + E L E +E K EP IQ+ L+ A TG GKT +F L
Sbjct: 33 SLCLFPEDFLLKEFVEFFRKCVG-EPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLA 90
Query: 786 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV----G 841
+ +++ A +G ++ PT L Q E K+ G+ T ++ G
Sbjct: 91 MSLFL-----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG 139
Query: 842 GLS-REEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 899
+ RE++ F L +IVI T L Y L +I +D+ D ++ +
Sbjct: 140 RIPKREKENFMQNLRNFKIVITTTQFLS----KHYRELGHFDFIFVDDVDAILKAS--KN 193
Query: 900 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 959
V K+L + + + K + ++ TAT + L
Sbjct: 194 VDKLLHLLGFHY--------DLKTKSW----VGEARGCLMVSTATAKKGKKAELFRQL-- 239
Query: 960 PATVYIG-SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1018
+ +G + + + + L +L + + II+ + A+ + +
Sbjct: 240 -----LNFDIGSSRITVRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYE 293
Query: 1019 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDI 1066
L+ + + ++ G D L+ T RG+D+
Sbjct: 294 SLKN-KFRIGIVT-----ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339
Score = 57.4 bits (139), Expect = 4e-08
Identities = 65/352 (18%), Positives = 122/352 (34%), Gaps = 56/352 (15%)
Query: 1401 PVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLP 1460
+ + E L E +E K EP IQ+ L+ A TG GKT +F L
Sbjct: 33 SLCLFPEDFLLKEFVEFFRKCVG-EPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLA 90
Query: 1461 LLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVV----G 1516
+ +++ A +G ++ PT L Q E K+ G+ T ++ G
Sbjct: 91 MSLFL-----------ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG 139
Query: 1517 GLS-REEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPD 1574
+ RE++ F L +IVI T L Y L +I +D+ D ++ +
Sbjct: 140 RIPKREKENFMQNLRNFKIVITTTQFLS----KHYRELGHFDFIFVDDVDAILKAS--KN 193
Query: 1575 VQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRR 1634
V K+L + + + K + ++ TAT + L
Sbjct: 194 VDKLLHLLGFHY--------DLKTKSW----VGEARGCLMVSTATAKKGKKAELFRQL-- 239
Query: 1635 PATVYIG-SVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAK 1693
+ +G + + + + L +L + + II+ + A+ + +
Sbjct: 240 -----LNFDIGSSRITVRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYE 293
Query: 1694 GLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVAT----DVAGRGIDI 1741
L+ + + ++ G D L+ T RG+D+
Sbjct: 294 SLKN-KFRIGIVT-----ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339
Score = 39.3 bits (92), Expect = 0.016
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 33/170 (19%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
EP IQ+ L+ A TG GKT +F L + +++ A +G
Sbjct: 56 EPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLFL-----------ALKGKRCY 103
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVV----GGLS-REEQGFRLRLG-CEIVIATP 122
++ PT L Q E K+ G+ T ++ G + RE++ F L +IVI T
Sbjct: 104 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTT 163
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEAD------RMID-----MGFEPDVQK 161
L Y L +I +D+ D + +D +GF D++
Sbjct: 164 QFLS----KHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 209
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 69 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 127
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 128 VLENRYLV-LNQCTYIVLDEADRMI 151
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 810 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 868
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 869 VLENRYLV-LNQCTYIVLDEADRMI 892
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
Score = 57.3 bits (137), Expect = 5e-08
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+P Q + ++ ++ I A TG GKT LL + Q +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVV 65
Query: 1485 IMAPTREL-AQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
A + Q + F G R + G + ++ +I+I TP L++
Sbjct: 66 FFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124
Query: 1544 VLENRYLV-LNQCTYIVLDEADRMI 1567
L+ + L+ T ++ DE
Sbjct: 125 NLKKGTIPSLSIFTLMIFDECHNTS 149
Score = 53.8 bits (128), Expect = 5e-07
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 985 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1032
+D L E + + I+FV + D L +E G +
Sbjct: 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 442
Query: 1033 GKGQEQRELALNSLKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G ++ L++ K G +IL+AT VA GIDI ++VI Y+ ++ GR
Sbjct: 443 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1118
+ + +
Sbjct: 503 RA--RGSKCFLLTSNAGVIEKEQINMY 527
Score = 53.8 bits (128), Expect = 5e-07
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 1660 QDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKL------------GYNACTLHG 1707
+D L E + + I+FV + D L +E G +
Sbjct: 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 442
Query: 1708 GKGQEQRELALNSLKG-GSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G ++ L++ K G +IL+AT VA GIDI ++VI Y+ ++ GR
Sbjct: 443 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQM 1793
+ + +
Sbjct: 503 RA--RGSKCFLLTSNAGVIEKEQINMY 527
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 56.7 bits (137), Expect = 7e-08
Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 24/230 (10%)
Query: 374 RKRRSRSRERDYDRVRERDTDRSRDDRGR-DRDRDRLERDRSREREREKRHHRRDRSKER 432
+ R Y R + R + + + +R ER K+ H +K
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 433 DGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEEL 492
+ + + +E + + E + ++ S E
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNN--------------------LEITYSTETEKLRSDVER 971
Query: 493 LAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESK 552
L + +EEEA++ + + LRK + + +K +EE K + T++ E K
Sbjct: 972 L--RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 553 RENFDARLRRDREKKKEDPEEKELNKDKEREGEA-IKERYLGLVKKKRRV 601
+N + ++ ++ + KE+ + E++ K+ L L ++ R
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 52.8 bits (127), Expect = 1e-06
Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 39/281 (13%)
Query: 413 RSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSR---DKEGYEPTEQM 469
R+R + R G R Y+ RE ++ + R + Y T +
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 470 VISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEM 529
++ + + AK+E L K K E ER + + ++ ++
Sbjct: 890 IVYLQCCYRRMMAKRE-------LKKLKIEAR---------SVERYKKLHIGLENKIMQL 933
Query: 530 RKKMEEERKKRQEFTKE-ASFESKRENFDARLRRDREK-KKEDPEEKELNKDKEREGEAI 587
++K++E+ K+ + ++ + E +LR D E+ + + E K E I
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 588 KERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIK 647
+ L + + + + + D + + S KE++ +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWA-----DKYKHETEQLVSELKEQNT-------------LL 1035
Query: 648 AQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQK 688
++++ K TE +++ K+++ ++
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
Score = 36.2 bits (84), Expect = 0.13
Identities = 27/236 (11%), Positives = 77/236 (32%), Gaps = 39/236 (16%)
Query: 478 KGAAAKKEPLSLEELLAKKKAEE---EARSKPKFLTKEERAAEALRKRQAEVEEMRKKME 534
+ +K + + +A R+K + + E + + Q V ++
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMM-LREHKSIII---QKHVRGWLARVH 882
Query: 535 EERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGL 594
R + + + L++ + + + K+L+ E + ++ + +
Sbjct: 883 YHRTLKAIVYLQCCYRRMMA--KRELKKLKIEARSVERYKKLHIGLENKIMQLQRK---I 937
Query: 595 VKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQS 654
++ + + L ++ + E T + + ++ + +
Sbjct: 938 DEQNKEYKSLLEKM-----NNLEITYSTETEKLRSDVE------------RLRMSEEEAK 980
Query: 655 KFYGEMLEKRRTEAEKEQEKVR-----LKKVKKREEKQKWDDRHWTEKSLDEMTER 705
R ++E K+R + KK E+ +H TE+ + E+ E+
Sbjct: 981 N-----ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 129 LENRYLV-LNQCTYIVLDEADRMID 152
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 809
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 810 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 869
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 870 LENRYLV-LNQCTYIVLDEADRMID 893
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
Score = 55.7 bits (133), Expect = 1e-07
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 1484
+ Q + + ++ + A TGSGKT +L + A + +
Sbjct: 7 KARSYQIELAQPAINGKNALICAPTGSGKTFVSILICE-------HHFQNMPAGRKAKVV 59
Query: 1485 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 1544
+A + +Q + G + G ++ +I++ TP L++
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 1545 LENRYLV-LNQCTYIVLDEADRMID 1568
E+ L L+ T ++ DE
Sbjct: 120 FEDGTLTSLSIFTLMIFDECHNTTG 144
Score = 52.6 bits (125), Expect = 9e-07
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL-- 1023
K E I +E K ++L+ +L+ + ++F + L K +E+
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 1024 ----------GYNACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMV 1072
G G ++ L++ K +L+AT VA GIDI ++V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 1073 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1117
+ Y+ + ++ GR GRA + +K + +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518
Score = 52.6 bits (125), Expect = 9e-07
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 19/165 (11%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKL-- 1698
K E I +E K ++L+ +L+ + ++F + L K +E+
Sbjct: 356 KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPI 415
Query: 1699 ----------GYNACTLHGGKGQEQRELALNSLK-GGSKDILVATDVAGRGIDIKDVSMV 1747
G G ++ L++ K +L+AT VA GIDI ++V
Sbjct: 416 LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLV 475
Query: 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQ 1792
+ Y+ + ++ GR GRA + +K + +
Sbjct: 476 VLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVENEKCNR 518
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase,
hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14
c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 54.8 bits (132), Expect = 2e-07
Identities = 59/350 (16%), Positives = 101/350 (28%), Gaps = 91/350 (26%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ + G+GKT FL +L E A + +++APTR + +++E
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQIL-----------AECARRRLRTLVLAPTRVVLSEMKE 55
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
G + T S E I L + + I
Sbjct: 56 AF--HGLDVKFHTQAFSAHGSGREV---------IDAMCHATLTYRMLEPTR-VVNWEVI 103
Query: 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
++DEA + D I A + ++ T++ TA
Sbjct: 104 IMDEAHFL-------DPASIAAR------------------GWAAHRARANESATILMTA 138
Query: 944 TMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1001
T P S + I V P+E + +
Sbjct: 139 TPP------GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRP------------- 179
Query: 1002 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1061
F+ + A+V+A L K G + L+ + + K D ++ATD+A
Sbjct: 180 -TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI----KQKKPDFILATDIAE 234
Query: 1062 RGIDIKDVSMVINYDMAKSIEDYTHRIG----------------RTGRAG 1095
G ++ V V++ A R GR G
Sbjct: 235 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
Score = 54.8 bits (132), Expect = 2e-07
Identities = 59/350 (16%), Positives = 101/350 (28%), Gaps = 91/350 (26%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ + G+GKT FL +L E A + +++APTR + +++E
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQIL-----------AECARRRLRTLVLAPTRVVLSEMKE 55
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
G + T S E I L + + I
Sbjct: 56 AF--HGLDVKFHTQAFSAHGSGREV---------IDAMCHATLTYRMLEPTR-VVNWEVI 103
Query: 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
++DEA + D I A + ++ T++ TA
Sbjct: 104 IMDEAHFL-------DPASIAAR------------------GWAAHRARANESATILMTA 138
Query: 1619 TMPPAVERLARSYLRRPATVYIGSVGK--PTERIEQIVYILSEQDKRKKLMEVLNRGVKK 1676
T P S + I V P+E + +
Sbjct: 139 TPP------GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRP------------- 179
Query: 1677 PVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAG 1736
F+ + A+V+A L K G + L+ + + K D ++ATD+A
Sbjct: 180 -TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI----KQKKPDFILATDIAE 234
Query: 1737 RGIDIKDVSMVINYDMAKSIEDYTHRIG----------------RTGRAG 1770
G ++ V V++ A R GR G
Sbjct: 235 MGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIG 283
Score = 35.2 bits (81), Expect = 0.19
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 23/126 (18%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ + G+GKT FL +L E A + +++APTR + +++E
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQIL-----------AECARRRLRTLVLAPTRVVLSEMKE 55
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 142
G + T S E I L + + I
Sbjct: 56 AF--HGLDVKFHTQAFSAHGSGREV---------IDAMCHATLTYRMLEPTR-VVNWEVI 103
Query: 143 VLDEAD 148
++DEA
Sbjct: 104 IMDEAH 109
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 54.5 bits (131), Expect = 2e-07
Identities = 64/377 (16%), Positives = 102/377 (27%), Gaps = 98/377 (25%)
Query: 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806
G A P I + R I G+GKT L ++ E +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV-----------REALLRRL 49
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
+I+APTR +A ++EE G P+ +T V + E + +
Sbjct: 50 RTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VDLMCHA-- 96
Query: 867 IDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 923
R L + IV+DEA +
Sbjct: 97 --TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------DPCSVAAR 130
Query: 924 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 983
++ + M TAT P + + +S IE I +
Sbjct: 131 GYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPIEDIEREIP 173
Query: 984 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1043
E+ + + + FV K + +A L K G L +
Sbjct: 174 ERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT- 230
Query: 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----------NYDMAKSIEDYT-------- 1085
K D +V TD++ G + VI D + +
Sbjct: 231 ---KLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286
Query: 1086 --HRIGRTGRAGKEGLA 1100
R GR GR
Sbjct: 287 AAQRRGRIGR-NPAQED 302
Score = 54.5 bits (131), Expect = 2e-07
Identities = 64/377 (16%), Positives = 102/377 (27%), Gaps = 98/377 (25%)
Query: 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481
G A P I + R I G+GKT L ++ E +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV-----------REALLRRL 49
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
+I+APTR +A ++EE G P+ +T V + E + +
Sbjct: 50 RTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VDLMCHA-- 96
Query: 1542 IDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 1598
R L + IV+DEA +
Sbjct: 97 --TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------DPCSVAAR 130
Query: 1599 KLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILS 1658
++ + M TAT P + + +S IE I +
Sbjct: 131 GYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPIEDIEREIP 173
Query: 1659 EQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELAL 1718
E+ + + + FV K + +A L K G L +
Sbjct: 174 ERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKT- 230
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVI----------NYDMAKSIEDYT-------- 1760
K D +V TD++ G + VI D + +
Sbjct: 231 ---KLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286
Query: 1761 --HRIGRTGRAGKEGLA 1775
R GR GR
Sbjct: 287 AAQRRGRIGR-NPAQED 302
Score = 37.9 bits (88), Expect = 0.027
Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 29/145 (20%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
G A P I + R I G+GKT L ++ E +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV-----------REALLRRL 49
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 125
+I+APTR +A ++EE G P+ +T V + E + +
Sbjct: 50 RTLILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VDLMCHA-- 96
Query: 126 IDVLENRYLV---LNQCTYIVLDEA 147
R L + IV+DEA
Sbjct: 97 --TFTTRLLSSTRVPNYNLIVMDEA 119
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator, ATP-binding,
DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 54.3 bits (130), Expect = 4e-07
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 987 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRE--LAL 1043
+ + LM L + V++ + A L + L E+ G A H G +R+ A
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAW 549
Query: 1044 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095
+ + +L+ +++ G + + S ++ +D+ + + RIGR R G
Sbjct: 550 FAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601
Score = 54.3 bits (130), Expect = 4e-07
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 1662 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRE--LAL 1718
+ + LM L + V++ + A L + L E+ G A H G +R+ A
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAW 549
Query: 1719 NSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770
+ + +L+ +++ G + + S ++ +D+ + + RIGR R G
Sbjct: 550 FAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601
Score = 33.5 bits (76), Expect = 0.80
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 293 KRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGL-EKLGYNACTLHGGKGQEQRE 346
+ + LM L + V++ + A L + L E+ G A H G +R+
Sbjct: 490 RVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERD 544
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 54.0 bits (129), Expect = 4e-07
Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 6/189 (3%)
Query: 405 DRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
D +E R R+ +R + + ++ + +R E+EA G + + + +
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD--Q 696
Query: 465 PTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRK-RQ 523
+ + E + + E + A+ +AE + + + A+AL +
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKERE 583
AE+E ++K E E + + E + A + + K+ + +D
Sbjct: 757 AELERVKKVREMELIYARA---QLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA 813
Query: 584 GEAIKERYL 592
G ++ + L
Sbjct: 814 GPEMQVKLL 822
Score = 48.3 bits (114), Expect = 2e-05
Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 29/208 (13%)
Query: 368 RSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRD 427
+S P +R + +R E T+ + RLE++ ER+K + +
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQE--AAAKHEAQRLEQEARGRLERQKILDQSE 698
Query: 428 RSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPL 487
K R E + + + A+ +
Sbjct: 699 AEKARKELLELEAMSMAVESTGN-----------------------AKAEAESRAEAARI 735
Query: 488 SLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEA 547
E + + K + +A + E + R+ E+ R ++E E K Q+
Sbjct: 736 EGEGSVLQAKLKAQALAI----ETEAELERVKKVREMELIYARAQLELEVSKAQQLANVE 791
Query: 548 SFESKRENFDARLRRDREKKKEDPEEKE 575
+ + K R+ PE +
Sbjct: 792 AKKFKEMTEALGPGTIRDLAVAGPEMQV 819
Score = 47.1 bits (111), Expect = 6e-05
Identities = 28/216 (12%), Positives = 68/216 (31%), Gaps = 10/216 (4%)
Query: 399 DRGRDRDRDRLERDRSREREREKRHHRRDRSKER------DGKDRREGYRRERREEEASG 452
+ D D ++R++ ++ S + D + R R + E +
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666
Query: 453 SKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKE 512
+ ++ K + EQ E K + E + L + +A A E
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQK-ILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 513 ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPE 572
+ + + E ++ K++ + EA E ++ + L R + + +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQ---ALAIETEAELERVKKVREMELIYARAQLELEVS 782
Query: 573 EKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRK 608
+ + + E + LG + + +
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 40.2 bits (93), Expect = 0.007
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 7/178 (3%)
Query: 377 RSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR---EREREKRHHRRDRSKERD 433
RS + + + R R RLER + E E+ ++ +
Sbjct: 656 RSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMA 715
Query: 434 GKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELL 493
+ EA+ + + + + + I E E + +E EL+
Sbjct: 716 VESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVRE----MELI 771
Query: 494 AKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFES 551
+ E SK + L E +R + + + + +S
Sbjct: 772 YARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKS 829
Score = 38.3 bits (88), Expect = 0.026
Identities = 24/197 (12%), Positives = 64/197 (32%), Gaps = 4/197 (2%)
Query: 332 NACTLHGGKGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRER 391
N + Q + + + + +A + + S+ K ++ E++ ER
Sbjct: 631 NGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLER 690
Query: 392 DTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEAS 451
+ D ++ R L + E + + ++ R R EG + + +
Sbjct: 691 Q--KILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA 748
Query: 452 GSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTK 511
+ + E + + E A + E ++L + + + ++
Sbjct: 749 QALAIETEAELERVKKVREM--ELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGT 806
Query: 512 EERAAEALRKRQAEVEE 528
A A + Q ++ +
Sbjct: 807 IRDLAVAGPEMQVKLLQ 823
Score = 29.8 bits (66), Expect = 9.9
Identities = 28/225 (12%), Positives = 59/225 (26%), Gaps = 11/225 (4%)
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIF-VNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 344
+ + + + +F N + V + +E + Q
Sbjct: 602 AVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLA 661
Query: 345 RELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRE----RDYDRVRERDTDRSRDDR 400
E+ NS + +K ++ +R R +K +S ++ +
Sbjct: 662 IEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGN 721
Query: 401 GRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDK 460
+ R E R E E + + ++ RE E ++ + +
Sbjct: 722 AKAEAESRAEAAR-IEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE 780
Query: 461 EGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSK 505
E K E L + A E + K
Sbjct: 781 VSKAQQLA-----NVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 53.8 bits (129), Expect = 5e-07
Identities = 65/377 (17%), Positives = 108/377 (28%), Gaps = 97/377 (25%)
Query: 741 EIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 798
+ + I AE + + + R I G+GKT L ++ ++L + R
Sbjct: 160 DYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV--REALKRRLR 217
Query: 799 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 858
+I+APTR +A ++EE G P+ +T V + E +
Sbjct: 218 T---------LILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------V 257
Query: 859 VIATPGRLIDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 915
+ R L + IV+DEA
Sbjct: 258 DLMCHA----TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------ 289
Query: 916 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 975
+ ++ + M TAT P + + +S I
Sbjct: 290 DPCSVAARGYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPI 332
Query: 976 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035
E I + E+ + + + FV K + +A L K G L
Sbjct: 333 EDIEREIPERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF 390
Query: 1036 QEQRELALNSLKGGSKDILVATDVAGRG--IDIKDV-------SMVINYDMAKSIEDYT- 1085
+ K D +V TD++ G V VI D + +
Sbjct: 391 DTEYPKT----KLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGP 446
Query: 1086 ---------HRIGRTGR 1093
R GR GR
Sbjct: 447 IPVTPASAAQRRGRIGR 463
Score = 53.8 bits (129), Expect = 5e-07
Identities = 65/377 (17%), Positives = 108/377 (28%), Gaps = 97/377 (25%)
Query: 1416 EIIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIAR 1473
+ + I AE + + + R I G+GKT L ++ ++L + R
Sbjct: 160 DYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV--REALKRRLR 217
Query: 1474 MEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEI 1533
+I+APTR +A ++EE G P+ +T V + E +
Sbjct: 218 T---------LILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------V 257
Query: 1534 VIATPGRLIDVLENRYLV---LNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 1590
+ R L + IV+DEA
Sbjct: 258 DLMCHA----TFTTRLLSSTRVPNYNLIVMDEAHFT------------------------ 289
Query: 1591 TEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERI 1650
+ ++ + M TAT P + + +S I
Sbjct: 290 DPCSVAARGYISTRVEMGEAAAIFM-TATPPGSTDPFPQSN----------------SPI 332
Query: 1651 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710
E I + E+ + + + FV K + +A L K G L
Sbjct: 333 EDIEREIPERSWNTGFDWI--TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF 390
Query: 1711 QEQRELALNSLKGGSKDILVATDVAGRG--IDIKDV-------SMVINYDMAKSIEDYT- 1760
+ K D +V TD++ G V VI D + +
Sbjct: 391 DTEYPKT----KLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGP 446
Query: 1761 ---------HRIGRTGR 1768
R GR GR
Sbjct: 447 IPVTPASAAQRRGRIGR 463
Score = 34.5 bits (79), Expect = 0.39
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 31/152 (20%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGL--QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARM 58
+ I AE + + + R I G+GKT L ++ ++L + R
Sbjct: 161 YVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIV--REALKRRLRT 218
Query: 59 EDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 118
+I+APTR +A ++EE G P+ +T V + E +
Sbjct: 219 ---------LILAPTRVVAAEMEEALR--GLPIRYQTPAVKSDHTGREI---------VD 258
Query: 119 IATPGRLIDVLENRYLV---LNQCTYIVLDEA 147
+ R L + IV+DEA
Sbjct: 259 LMCHA----TFTTRLLSSTRVPNYNLIVMDEA 286
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.2 bits (119), Expect = 9e-07
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 504 SKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRD 563
++ LT+E E++RK + E + ++++ K ++ +E + + E ++ R
Sbjct: 75 AQADRLTQE---PESIRKWREEQRKRLQELDAASKVMEQEWREKA-KKDLEEWNQRQSEQ 130
Query: 564 REKKKED--PEEKELNKDKEREGEAI 587
EK K + +K ++ + + I
Sbjct: 131 VEKNKINNRIADKAFY--QQPDADII 154
Score = 40.5 bits (94), Expect = 0.002
Identities = 14/96 (14%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKERE 583
A+ + + +E R+ RE RL ++ + + + +E+
Sbjct: 75 AQADRLT---QEPESIRKW----------REEQRKRL-----QELDAASKVMEQEWREKA 116
Query: 584 GEAIKERYLGLVKKKRRVR---RLNDRKFVFDWDAS 616
+ ++E ++ + + R+ D+ F DA
Sbjct: 117 KKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 39.8 bits (92), Expect = 0.003
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 402 RDRDRDRL-ERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDK 460
R+ R RL E D + + ++ +E+ KD E + R+ E+ +K +R
Sbjct: 91 REEQRKRLQELDAASKVMEQE-------WREKAKKDLEEWNQ--RQSEQVEKNKINNRIA 141
Query: 461 EGYEPTEQMVISDEEED 477
+ + + D
Sbjct: 142 D-----KAF-YQQPDAD 152
Score = 36.7 bits (84), Expect = 0.031
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 464 EPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQ 523
EP E + EE+ K L+E + ++ K ++ E +RQ
Sbjct: 83 EP-ESIRKWREEQRK---------RLQE-----LDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFE 550
+ E++ K R + F ++ +
Sbjct: 128 S--EQVEKNKINNRIADKAFYQQPDAD 152
Score = 34.7 bits (79), Expect = 0.14
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 662 EKRRTEAE-----KEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTER 705
++ E E +E+++ RL+++ + + + R +K L+E +R
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 34.7 bits (79), Expect = 0.14
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 1337 EKRRTEAE-----KEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTER 1380
++ E E +E+++ RL+++ + + + R +K L+E +R
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
Score = 34.0 bits (77), Expect = 0.26
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 646 IKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKRE----------EKQKWDDRHWT 695
I+ + +Q K L++ ++ +++ R K K E EK K ++R
Sbjct: 87 IRKWREEQRK----RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 696 EKSLDEMTE 704
+ +
Sbjct: 143 KAFYQQPDA 151
Score = 34.0 bits (77), Expect = 0.26
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 1321 IKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKRE----------EKQKWDDRHWT 1370
I+ + +Q K L++ ++ +++ R K K E EK K ++R
Sbjct: 87 IRKWREEQRK----RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 1371 EKSLDEMTE 1379
+ +
Sbjct: 143 KAFYQQPDA 151
Score = 33.2 bits (75), Expect = 0.44
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 412 DRSREREREK-RHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMV 470
DR + E E R R ++ K R + + + + + R+K + E
Sbjct: 78 DRLTQ-EPESIRKWREEQRK-----------RLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Query: 471 ISDEEEDKGAAAKKEPLSLEELLAKKKAE 499
E+ +K + + + + A+
Sbjct: 126 RQSEQVEKNKINNRI--ADKAFYQQPDAD 152
Score = 30.5 bits (68), Expect = 3.2
Identities = 12/125 (9%), Positives = 35/125 (28%), Gaps = 49/125 (39%)
Query: 1238 LSRYSEQDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVD 1297
+++ E + + K +E + + ++E DA+
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQEL-----------------------DAASK---- 106
Query: 1298 YNSIYKERHQVQFFGRGNIAGIDIKAQK--RDQSKFYGEMLEKRRTEAEKEQEKVRLKKV 1355
+ + KA+K + ++ E +EK + +
Sbjct: 107 -----VMEQEWR-----------EKAKKDLEEWNQRQSEQVEKNKINNRIADKAF----Y 146
Query: 1356 KKREE 1360
++ +
Sbjct: 147 QQPDA 151
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 46.0 bits (109), Expect = 1e-04
Identities = 58/380 (15%), Positives = 102/380 (26%), Gaps = 103/380 (27%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ + G+GKT L L+ +++ K R +I+APTR +A ++ E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLV--REAVKKRLRT---------VILAPTRVVASEMYE 49
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQC 880
L + + + + + L +
Sbjct: 50 A-------LRGEPIRYMTPAVQS----ERTGNEIVDFMCHS----TFTMKLLQGVRVPNY 94
Query: 881 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 940
++DEA + + + S M
Sbjct: 95 NLYIMDEAHFL------------------------DPASVAARGYIETRVSMGDAGAIFM 130
Query: 941 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1000
TAT P E S P + P + ++E D R
Sbjct: 131 -TATPPGTTEAFPPSN--SPIIDEETRI--PDKAWNSGYEWITEFDGR------------ 173
Query: 1001 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1060
+ FV+ K + L+K G L+ + + K D ++ TD++
Sbjct: 174 --TVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKC----KSEKWDFVITTDIS 227
Query: 1061 GRGIDIKDVSMVINYDMAKSIEDY-------------------THRIGRTGRAGKEGLAV 1101
G + VI D K+I+ R GR GR E L
Sbjct: 228 EMGANF-KADRVI--DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR-NPEKLGD 283
Query: 1102 SFC----TKDDSHLFYDLKQ 1117
+ D+ +
Sbjct: 284 IYAYSGNVSSDNEGHVSWTE 303
Score = 46.0 bits (109), Expect = 1e-04
Identities = 58/380 (15%), Positives = 102/380 (26%), Gaps = 103/380 (27%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ + G+GKT L L+ +++ K R +I+APTR +A ++ E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLV--REAVKKRLRT---------VILAPTRVVASEMYE 49
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQC 1555
L + + + + + L +
Sbjct: 50 A-------LRGEPIRYMTPAVQS----ERTGNEIVDFMCHS----TFTMKLLQGVRVPNY 94
Query: 1556 TYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVM 1615
++DEA + + + S M
Sbjct: 95 NLYIMDEAHFL------------------------DPASVAARGYIETRVSMGDAGAIFM 130
Query: 1616 FTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVK 1675
TAT P E S P + P + ++E D R
Sbjct: 131 -TATPPGTTEAFPPSN--SPIIDEETRI--PDKAWNSGYEWITEFDGR------------ 173
Query: 1676 KPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVA 1735
+ FV+ K + L+K G L+ + + K D ++ TD++
Sbjct: 174 --TVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKC----KSEKWDFVITTDIS 227
Query: 1736 GRGIDIKDVSMVINYDMAKSIEDY-------------------THRIGRTGRAGKEGLAV 1776
G + VI D K+I+ R GR GR E L
Sbjct: 228 EMGANF-KADRVI--DPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGR-NPEKLGD 283
Query: 1777 SFC----TKDDSHLFYDLKQ 1792
+ D+ +
Sbjct: 284 IYAYSGNVSSDNEGHVSWTE 303
Score = 32.1 bits (73), Expect = 2.1
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 29/128 (22%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ + G+GKT L L+ +++ K R +I+APTR +A ++ E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLV--REAVKKRLRT---------VILAPTRVVASEMYE 49
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQC 139
L + + + + + L +
Sbjct: 50 A-------LRGEPIRYMTPAVQS----ERTGNEIVDFMCHS----TFTMKLLQGVRVPNY 94
Query: 140 TYIVLDEA 147
++DEA
Sbjct: 95 NLYIMDEA 102
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 45.5 bits (107), Expect = 1e-04
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
E YRR + EE G K D + + E E L KK+
Sbjct: 296 ELYRRCKLEE--MGFKDTDPDSKPFSLQETYEAKRNEF-------------LGELQKKEE 340
Query: 499 EEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDA 558
E + KE EA ++ + + ++K ++E+KK ++ K+ S + + F
Sbjct: 341 EMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED--KKKSLDDEVNAFKQ 398
Query: 559 RLRRDREKKKEDPEE---KELNKDKERE 583
R + + + + L +DKE++
Sbjct: 399 RKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 31.6 bits (71), Expect = 2.5
Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 478 KGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEER 537
K +P SL+E K+ E + KEE + +R E E K+ E+E
Sbjct: 309 KDTDPDSKPFSLQETYEAKRNEFL----GELQKKEEEMRQMFVQRVKEKEAELKEAEKEL 364
Query: 538 KKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKK 597
++ + K+ + +++ + + + ++ + K + + +G K
Sbjct: 365 HEKFDRLKK-LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 598 KRR 600
+++
Sbjct: 424 EKK 426
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane, viral
protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A
2qeq_A
Length = 459
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/366 (15%), Positives = 98/366 (26%), Gaps = 100/366 (27%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APTRELAQQIE 822
+ + + GSGKT L ++ +DA Q + APTR +A ++
Sbjct: 20 KRQMTVLDLHPGSGKTRKILPQII------------KDAIQQRLRTAVLAPTRVVAAEMA 67
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQ 879
E G P+ +T V E + + L +R + +
Sbjct: 68 EALR--GLPVRYQTSAVQREHQGNEI---------VDVMCHA----TLTHRLMSPNRVPN 112
Query: 880 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 939
V+DEA D I + + +
Sbjct: 113 YNLFVMDEAHFT-------DPASIA----ARGYIATKVELGEAAAIFM------------ 149
Query: 940 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV 999
TAT P + P + + I + + +
Sbjct: 150 --TATPP------GTTD---PFPDSNAPIHDLQDEIPDRAWSSGYEWITEY--------- 189
Query: 1000 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1059
+ FV K + +A L++ G L+ + K G D ++ TD+
Sbjct: 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKC----KNGDWDFVITTDI 245
Query: 1060 AGRGIDIKDVSMVI----------NYDMAKSIEDYTH----------RIGRTGRAGKEGL 1099
+ G + S VI + + R GR GR +
Sbjct: 246 SEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR-NPNQV 303
Query: 1100 AVSFCT 1105
+
Sbjct: 304 GDEYHY 309
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/366 (15%), Positives = 98/366 (26%), Gaps = 100/366 (27%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APTRELAQQIE 1497
+ + + GSGKT L ++ +DA Q + APTR +A ++
Sbjct: 20 KRQMTVLDLHPGSGKTRKILPQII------------KDAIQQRLRTAVLAPTRVVAAEMA 67
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQ 1554
E G P+ +T V E + + L +R + +
Sbjct: 68 EALR--GLPVRYQTSAVQREHQGNEI---------VDVMCHA----TLTHRLMSPNRVPN 112
Query: 1555 CTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTV 1614
V+DEA D I + + +
Sbjct: 113 YNLFVMDEAHFT-------DPASIA----ARGYIATKVELGEAAAIFM------------ 149
Query: 1615 MFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGV 1674
TAT P + P + + I + + +
Sbjct: 150 --TATPP------GTTD---PFPDSNAPIHDLQDEIPDRAWSSGYEWITEY--------- 189
Query: 1675 KKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDV 1734
+ FV K + +A L++ G L+ + K G D ++ TD+
Sbjct: 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKC----KNGDWDFVITTDI 245
Query: 1735 AGRGIDIKDVSMVI----------NYDMAKSIEDYTH----------RIGRTGRAGKEGL 1774
+ G + S VI + + R GR GR +
Sbjct: 246 SEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR-NPNQV 303
Query: 1775 AVSFCT 1780
+
Sbjct: 304 GDEYHY 309
Score = 37.5 bits (87), Expect = 0.036
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 31/129 (24%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIM-APTRELAQQIE 81
+ + + GSGKT L ++ +DA Q + APTR +A ++
Sbjct: 20 KRQMTVLDLHPGSGKTRKILPQII------------KDAIQQRLRTAVLAPTRVVAAEMA 67
Query: 82 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLV---LNQ 138
E G P+ +T V E + + L +R + +
Sbjct: 68 EALR--GLPVRYQTSAVQREHQGNEI---------VDVMCHA----TLTHRLMSPNRVPN 112
Query: 139 CTYIVLDEA 147
V+DEA
Sbjct: 113 YNLFVMDEA 121
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 44.0 bits (103), Expect = 5e-04
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 48/328 (14%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 64
P Q AI + ++ A T +GKT+ A L
Sbjct: 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 129
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 130 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 178
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
L +L V+ + +++ DE M D ++ + +P
Sbjct: 179 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 238
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
A + K + + P + Y+ + + + + K +R+
Sbjct: 239 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH----------GDGIYLVVDEKSTFRE- 287
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
A+ ++ P + T + + K+++++ +
Sbjct: 288 ----ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKK 341
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYN 332
PVI+F K+ + LA + KL +N
Sbjct: 342 KYNPVIVFSFSKRDCEELALKMSKLDFN 369
Score = 36.7 bits (84), Expect = 0.094
Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 65/313 (20%)
Query: 750 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 805
P Q AI + ++ A T +GKT+ A L
Sbjct: 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 129
Query: 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 865
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 130 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 178
Query: 866 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTEDAED 921
L +L V+ + +++ DE M D ++ + +P L +A +
Sbjct: 179 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 238
Query: 922 ENKLLANYNSKKKY----------------------------RQTVMFTATMPPAVERLA 953
+ + +S+ + ++ A+ ++
Sbjct: 239 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298
Query: 954 RSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGA 1013
P + T + + K+++++ + PVI+F K+
Sbjct: 299 NQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDC 356
Query: 1014 DVLAKGLEKLGYN 1026
+ LA + KL +N
Sbjct: 357 EELALKMSKLDFN 369
Score = 36.7 bits (84), Expect = 0.094
Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 65/313 (20%)
Query: 1425 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 1480
P Q AI + ++ A T +GKT+ A L
Sbjct: 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 129
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 1540
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 130 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 178
Query: 1541 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTEDAED 1596
L +L V+ + +++ DE M D ++ + +P L +A +
Sbjct: 179 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 238
Query: 1597 ENKLLANYNSKKKY----------------------------RQTVMFTATMPPAVERLA 1628
+ + +S+ + ++ A+ ++
Sbjct: 239 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298
Query: 1629 RSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGA 1688
P + T + + K+++++ + PVI+F K+
Sbjct: 299 NQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDC 356
Query: 1689 DVLAKGLEKLGYN 1701
+ LA + KL +N
Sbjct: 357 EELALKMSKLDFN 369
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 44.1 bits (103), Expect = 5e-04
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 48/328 (14%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQG 64
P Q AI + ++ A T +GKT+ A L
Sbjct: 184 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NK 227
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGR 124
I +P + L+ Q E +G+ T G ++ ++ T
Sbjct: 228 QRVIYTSPIKALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEI 276
Query: 125 LIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKL 184
L +L V+ + +++ DE M D ++ + +P
Sbjct: 277 LRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAME 336
Query: 185 LANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQT 244
A + K + + P + Y+ + + + + K +R+
Sbjct: 337 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH----------GDGIYLVVDEKSTFRE- 385
Query: 245 VMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRG 304
A+ ++ P + T + + K+++++ +
Sbjct: 386 ----ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKK 439
Query: 305 VKKPVIIFVNQKKGADVLAKGLEKLGYN 332
PVI+F K+ + LA + KL +N
Sbjct: 440 KYNPVIVFSFSKRDCEELALKMSKLDFN 467
Score = 37.9 bits (87), Expect = 0.042
Identities = 54/424 (12%), Positives = 119/424 (28%), Gaps = 82/424 (19%)
Query: 639 GNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKS 698
N IK+ K +++ ++ +++ + K + +
Sbjct: 90 NNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVR 149
Query: 699 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 758
L + I K + R + P Q A
Sbjct: 150 LSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPF-----------------TLDPFQDTA 192
Query: 759 IPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 814
I + ++ A T +GKT+ A L I +P
Sbjct: 193 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NKQRVIYTSPI 236
Query: 815 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 874
+ L+ Q E +G+ T G ++ ++ T L +L
Sbjct: 237 KALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEILRSMLYRGS 285
Query: 875 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTEDAEDENKLLANYN 930
V+ + +++ DE M D ++ + +P L +A + + + +
Sbjct: 286 EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIH 345
Query: 931 SKKKY----------------------------RQTVMFTATMPPAVERLARSYLRRPAT 962
S+ + ++ A+ ++ P +
Sbjct: 346 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405
Query: 963 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1022
T + + K+++++ + PVI+F K+ + LA + K
Sbjct: 406 TDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 463
Query: 1023 LGYN 1026
L +N
Sbjct: 464 LDFN 467
Score = 37.9 bits (87), Expect = 0.042
Identities = 54/424 (12%), Positives = 119/424 (28%), Gaps = 82/424 (19%)
Query: 1314 GNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKS 1373
N IK+ K +++ ++ +++ + K + +
Sbjct: 90 NNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVR 149
Query: 1374 LDEMTERDWRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQA 1433
L + I K + R + P Q A
Sbjct: 150 LSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPF-----------------TLDPFQDTA 192
Query: 1434 IPIGLQNRDIIGVAETGSGKTL----AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPT 1489
I + ++ A T +GKT+ A L I +P
Sbjct: 193 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------NKQRVIYTSPI 236
Query: 1490 RELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRY 1549
+ L+ Q E +G+ T G ++ ++ T L +L
Sbjct: 237 KALSNQKYRELLAEFGDVGLMT----GDITINPD-------AGCLVMTTEILRSMLYRGS 285
Query: 1550 LVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP----VTNLKPDTEDAEDENKLLANYN 1605
V+ + +++ DE M D ++ + +P L +A + + + +
Sbjct: 286 EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIH 345
Query: 1606 SKKKY----------------------------RQTVMFTATMPPAVERLARSYLRRPAT 1637
S+ + ++ A+ ++ P +
Sbjct: 346 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 405
Query: 1638 VYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEK 1697
T + + K+++++ + PVI+F K+ + LA + K
Sbjct: 406 TDSRGKKGQTYKGGSAKG--DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK 463
Query: 1698 LGYN 1701
L +N
Sbjct: 464 LDFN 467
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 43.1 bits (102), Expect = 0.001
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 11/141 (7%)
Query: 478 KGAAAKKEPLSLEELL--AKKKAEEEARSKPKFLTKEERAAEALR---KRQAEVEEMRKK 532
K + E + A E + E+ AEALR KRQ ++ + +K
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 882
Query: 533 MEEERKKRQEFT---KEASFESKRENFDARLRRD-REKKKEDPEEKELNKDKEREGEAIK 588
KK + + ++ + ++ + + D E + L + +I
Sbjct: 883 YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942
Query: 589 ERYLGLVKKKRRVRRLNDRKF 609
+ V L +RK
Sbjct: 943 AQL--TELNYNGVPELTERKD 961
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 42.2 bits (98), Expect = 0.002
Identities = 29/175 (16%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 409 LERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQ 468
L+ S E K R + + +++ EE G + + + + E
Sbjct: 411 LQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKES 470
Query: 469 MVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKR-QAEVE 527
M + + D+ +KE E + + A+ A+ + K E+ E + Q ++
Sbjct: 471 MTDAILQTDQ-TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLK 529
Query: 528 EMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKER 582
++ +KME +R + + +E + K + + L+ +K+ + E+ + +
Sbjct: 530 QLTEKMENDRVQLLK-EQERTLALKLQEQEQLLKEGFQKESRI-MKNEIQDLQTK 582
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 41.1 bits (95), Expect = 0.004
Identities = 43/382 (11%), Positives = 119/382 (31%), Gaps = 25/382 (6%)
Query: 366 RSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHR 425
++ + R + ++ + + + + ++ LE+ S E K
Sbjct: 20 ENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDVLEMYKAIGG 79
Query: 426 RDR--------SKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEED 477
+ + + ++ ++A +H KEGYEP + S++ +
Sbjct: 80 KIYIVDGDITKHISLEALSEDKKKIKDIYGKDALLHEHYVYAKEGYEPVLVIQSSEDYVE 139
Query: 478 KGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEER 537
A + ++L++ + + KFL A ++ + E
Sbjct: 140 NTEKALNVYYEIGKILSRDILSKINQPYQKFLDVLNTIKNASDSDGQDLLFTNQLKEHPT 199
Query: 538 KKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKK 597
EF ++ S E +E F E + D + + + ++ +++
Sbjct: 200 DFSVEFLEQNSNEV-QEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEINLSLEE 258
Query: 598 KRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFY 657
+ R L+ W+ + ++ E + S+
Sbjct: 259 LKDQRMLSRY---EKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEE 315
Query: 658 GEMLE----------KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDW 707
E+L+ + ++ ++ ++ EEK+ + + E++
Sbjct: 316 KELLKRIQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKE- 374
Query: 708 RIFREDYSITIKGGKVPDPVRN 729
F + + I+ + +++
Sbjct: 375 --FLKKLKLDIQPYDINQRLQD 394
Score = 31.5 bits (70), Expect = 2.9
Identities = 40/366 (10%), Positives = 112/366 (30%), Gaps = 28/366 (7%)
Query: 401 GRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDK 460
G ++ + E +++ R++++E K+ + + + E + K +
Sbjct: 3 GHGDVGMHVKEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKL 62
Query: 461 EGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALR 520
P++ + + K + L + +E++ + K + +
Sbjct: 63 LEKVPSDVLEMYKAIGGKIYIVDGDITKHISL--EALSEDKKKIKDIYGKDALLHEHYVY 120
Query: 521 KRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDK 580
++ + + E+ + E +E K L++D
Sbjct: 121 AKEGYEPVLVIQSSEDYVENTEKALNVYYEI---------------------GKILSRDI 159
Query: 581 EREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASE-DTSVDYNSIYKERHQVQFFGRG 639
+ +++L ++ + + + +F E T + + ++VQ
Sbjct: 160 LSKINQPYQKFLDVLNTIKNASDSDGQDLLFTNQLKEHPTDFSVEFLEQNSNEVQEVFAK 219
Query: 640 NIAGIDIKAQKRDQSKFYGEMLE--KRRTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEK 697
A + + E + E E LK + +KW+ +
Sbjct: 220 AFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEINLSLEELKDQRMLSRYEKWEKIKQHYQ 279
Query: 698 SLDEMTERDWRIFREDYSITIKGGKVP--DPVRNWKEASLPTEILEIIEKIGYAEPTPIQ 755
+ + R + I I+ K + ++ L ++ + + E ++
Sbjct: 280 HWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLK 339
Query: 756 RQAIPI 761
+ I I
Sbjct: 340 KLQIDI 345
>3h1t_A Type I site-specific restriction-modification system, R (restriction)
subunit; hydrolase, restriction enzyme HSDR, ATP-binding;
2.30A {Vibrio vulnificus}
Length = 590
Score = 40.5 bits (95), Expect = 0.005
Identities = 75/428 (17%), Positives = 124/428 (28%), Gaps = 78/428 (18%)
Query: 689 WDDRHWTEKSLDEMTERD--WRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKI 746
+D E+ L D ++ D I + P +
Sbjct: 130 FDYTTGEEQLLSRFPTPDELFKRLCGDEGIK---------DEDLDTLLSPYHHVSGYS-- 178
Query: 747 GYAEPTPIQRQAIP-----IGLQNRDIIGVAETGSGKT-LAFLLPLLVWIQSLPKIARME 800
P Q+ AI + + + TG+GKT +AF + L
Sbjct: 179 ----PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-----SWKLWSARWNR 229
Query: 801 DADQGPYAI-IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 859
D I +A L + +K TP G + GG ++ EI
Sbjct: 230 TGDYRKPRILFLADRNVLVDDPK---DKTFTPFGDARHKIEGG--------KVVKSREIY 278
Query: 860 IATPGRLIDVLENRYLVL----NQCTYIVLDEADRMIDMGFEPDVQKILEY--------M 907
A + L + I++DE R + ++ILEY M
Sbjct: 279 FAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPAFQIGM 337
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 967
T P ED D + N RQ + P V R+ G
Sbjct: 338 TAT---PLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGD 394
Query: 968 VGKPTERIEQIVYILSEQDKR-----------KKLMEVLNRGVKKP-VIIFVNQKKGADV 1015
V + I Y + ++ K L + + R + I+F ++ AD
Sbjct: 395 VDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454
Query: 1016 LAKGLEKLGYNACTLHG----------GKGQEQRELALNSLKGGSKDILVATDVAGRGID 1065
+ + L L + H GK + L+ + IL + + G+D
Sbjct: 455 MRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVD 514
Query: 1066 IKDVSMVI 1073
V+
Sbjct: 515 APTCKNVV 522
Score = 40.5 bits (95), Expect = 0.005
Identities = 75/428 (17%), Positives = 124/428 (28%), Gaps = 78/428 (18%)
Query: 1364 WDDRHWTEKSLDEMTERD--WRIFREDYSITIKGGKVPDPVRNWKEASLPTEILEIIEKI 1421
+D E+ L D ++ D I + P +
Sbjct: 130 FDYTTGEEQLLSRFPTPDELFKRLCGDEGIK---------DEDLDTLLSPYHHVSGYS-- 178
Query: 1422 GYAEPTPIQRQAIP-----IGLQNRDIIGVAETGSGKT-LAFLLPLLVWIQSLPKIARME 1475
P Q+ AI + + + TG+GKT +AF + L
Sbjct: 179 ----PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQI-----SWKLWSARWNR 229
Query: 1476 DADQGPYAI-IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIV 1534
D I +A L + +K TP G + GG ++ EI
Sbjct: 230 TGDYRKPRILFLADRNVLVDDPK---DKTFTPFGDARHKIEGG--------KVVKSREIY 278
Query: 1535 IATPGRLIDVLENRYLVL----NQCTYIVLDEADRMIDMGFEPDVQKILEY--------M 1582
A + L + I++DE R + ++ILEY M
Sbjct: 279 FAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPAFQIGM 337
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGS 1642
T P ED D + N RQ + P V R+ G
Sbjct: 338 TAT---PLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGD 394
Query: 1643 VGKPTERIEQIVYILSEQDKR-----------KKLMEVLNRGVKKP-VIIFVNQKKGADV 1690
V + I Y + ++ K L + + R + I+F ++ AD
Sbjct: 395 VDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADE 454
Query: 1691 LAKGLEKLGYNACTLHG----------GKGQEQRELALNSLKGGSKDILVATDVAGRGID 1740
+ + L L + H GK + L+ + IL + + G+D
Sbjct: 455 MRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVD 514
Query: 1741 IKDVSMVI 1748
V+
Sbjct: 515 APTCKNVV 522
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 40.1 bits (94), Expect = 0.007
Identities = 18/163 (11%), Positives = 51/163 (31%), Gaps = 17/163 (10%)
Query: 404 RDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKE-G 462
+D + + ++ + + EE + ++K +E
Sbjct: 127 SYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELK 186
Query: 463 YEPTEQMVISDEEEDKGAAAKKEPLSLEELLAK-----KKAEE--EARSKPKFLTKE-ER 514
+ + + E E + + + + EA + + + E E+
Sbjct: 187 EKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQ 246
Query: 515 AAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFD 557
+K + +++KK ++ F K +F+ ++ D
Sbjct: 247 LKAEEKKILNQFLKIKKKR------KELFEK--TFDYVSDHLD 281
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 39.8 bits (92), Expect = 0.008
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 439 EGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA 498
E YR + +++K + A ++E + K +
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKG-----------QLTKSPLAQMEEERREHVAKMKKMEM 336
Query: 499 EEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDA 558
E E + K K ++ ++ + Q E+M+K +E + K+ +E K FE ++ N++A
Sbjct: 337 EMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEE--KRRQFEDEKANWEA 394
Query: 559 RLRRDREKKKEDPEEKELNKDK 580
+ R ++ EK K K
Sbjct: 395 QQRILEQQNSSRTLEKNKKKGK 416
Score = 39.4 bits (91), Expect = 0.010
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 16/138 (11%)
Query: 474 EEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKM 533
G K L + + EE K E + + E + K
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 534 EEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLG 593
E E ++R E +++++ E + ++ EEK + E+ ++R L
Sbjct: 357 EAELQRRHE----------------QMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILE 400
Query: 594 LVKKKRRVRRLNDRKFVF 611
R + + + +F
Sbjct: 401 QQNSSRTLEKNKKKGKIF 418
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 38.0 bits (87), Expect = 0.018
Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 9/205 (4%)
Query: 400 RGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRD 459
R RD + +++ ER K + ++ + EE + K
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEK 97
Query: 460 KEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEAL 519
++M + E + AA E L ++ K E R+ + + A E L
Sbjct: 98 LA-----QKMESNKENREAHFAAMLERLQEKD---KHAEEVRQRAIEENNNWIKMAKEKL 149
Query: 520 RKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNK- 578
++ +E RK E E K +E E + + + K++ ++ E NK
Sbjct: 150 AQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKE 209
Query: 579 DKEREGEAIKERYLGLVKKKRRVRR 603
++E A+ ER K VR+
Sbjct: 210 NREAHFAAMLERLQEKDKHAEEVRK 234
Score = 36.5 bits (83), Expect = 0.059
Identities = 32/219 (14%), Positives = 78/219 (35%), Gaps = 6/219 (2%)
Query: 371 SPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSK 430
P S R RD + + ++R + ++ + L+ + + R
Sbjct: 28 GVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEEN 87
Query: 431 ERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLE 490
K +E ++ + + H + E + ++ + ++ E
Sbjct: 88 NNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKE 147
Query: 491 ELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFE 550
+L K ++ +E R +E + L +++ E+ ++ EE + KE +
Sbjct: 148 KLAQKMESNKENRKY-----QEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQ 202
Query: 551 SKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKE 589
N + R E +EK+ + ++ R+ + +KE
Sbjct: 203 KMESNKENREAHFAAML-ERLQEKDKHAEEVRKNKELKE 240
Score = 30.7 bits (68), Expect = 3.6
Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 3/151 (1%)
Query: 450 ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFL 509
S + P + +E + K AA++ E L K AE+ +
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV-- 79
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKE 569
+ E + E++ +KME ++ R+ + ++ A R R ++
Sbjct: 80 -IQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEEN 138
Query: 570 DPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
+ K + ++ E+ KE + +
Sbjct: 139 NNWIKMAKEKLAQKMESNKENRKYQEAELLK 169
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 38.0 bits (89), Expect = 0.032
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 34 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 92
GSGKT+ A L L + G M PT LA Q T + +
Sbjct: 399 GSGKTVVAQLAILDN-------------YEAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445
Query: 93 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 121
I L++G + +E+ LR G ++VI T
Sbjct: 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGT 478
Score = 38.0 bits (89), Expect = 0.032
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 775 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 833
GSGKT+ A L L + G M PT LA Q T + +
Sbjct: 399 GSGKTVVAQLAILDN-------------YEAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445
Query: 834 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 862
I L++G + +E+ LR G ++VI T
Sbjct: 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGT 478
Score = 38.0 bits (89), Expect = 0.032
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 1450 GSGKTL-AFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG 1508
GSGKT+ A L L + G M PT LA Q T + +
Sbjct: 399 GSGKTVVAQLAILDN-------------YEAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445
Query: 1509 IRTVLVVGGLS---REEQGFRLRLG-CEIVIAT 1537
I L++G + +E+ LR G ++VI T
Sbjct: 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGT 478
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 38.0 bits (87), Expect = 0.035
Identities = 34/278 (12%), Positives = 88/278 (31%), Gaps = 27/278 (9%)
Query: 417 REREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEE 476
R K + + ++ + + +R + + + + +K+ E +++ EE
Sbjct: 292 MRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEM 351
Query: 477 DKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEE 536
++ A E + L ++ + +A + L + + +A+ +R E + M E
Sbjct: 352 ERSQANLLEAQDMILRLEEQLRQLQAAKEE--LEQRQNELQAMMQRLEETKNM---EAAE 406
Query: 537 RKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVK 596
R+K ++ + E +D E ++ E ++ + ++ A+
Sbjct: 407 RQKLEDEIRAKQ-EEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATT---P 462
Query: 597 KKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKF 656
+ V D D + + + D
Sbjct: 463 QHHHVAERADTDPDHDNASDAGSESGGGDLA-----------------RGPDDLVDPVAD 505
Query: 657 YGEMLEK-RRTEAEKEQEKVRLKKVKKREEKQKWDDRH 693
+ E+ R + + K L + ++ D H
Sbjct: 506 RRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIH 543
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 38.0 bits (87), Expect = 0.038
Identities = 57/358 (15%), Positives = 94/358 (26%), Gaps = 88/358 (24%)
Query: 763 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 822
+Q + I T SGKT I + A G Y P + LA +I
Sbjct: 153 MQRKIIFHSGPTNSGKTYH-------------AIQKYFSAKSGVYC---GPLKLLAHEIF 196
Query: 823 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 882
E++N G P + T G Q + V
Sbjct: 197 EKSNAAGVPCDLVT----GEERVTVQPNGKQASHVSCT----------VEMCSVTTPYEV 242
Query: 883 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 942
V+DE + D P A L +
Sbjct: 243 AVIDEIQMIRD--------------------PARGWAWTRALLGLCA-----EEVHLCGE 277
Query: 943 ATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP 1002
V L T + +R+ I + + ++
Sbjct: 278 PAAIDLVMELM-------YTTGEEVEVRDYKRLTPISVLDHALESLDN--------LRPG 322
Query: 1003 VIIFVNQKKGADVLAKGLEKLGYNACTLHGG--KGQEQRELALNSLKGGSKDILVATDVA 1060
I K +++ +E G + ++G G + + + ILVATD
Sbjct: 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI 382
Query: 1061 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRT-------------GRAGKEGLAVSFCT 1105
G G+++ + +I Y + K + R GRAG+
Sbjct: 383 GMGLNL-SIRRIIFYSLIKP--SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437
Score = 38.0 bits (87), Expect = 0.038
Identities = 57/358 (15%), Positives = 94/358 (26%), Gaps = 88/358 (24%)
Query: 1438 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 1497
+Q + I T SGKT I + A G Y P + LA +I
Sbjct: 153 MQRKIIFHSGPTNSGKTYH-------------AIQKYFSAKSGVYC---GPLKLLAHEIF 196
Query: 1498 EETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTY 1557
E++N G P + T G Q + V
Sbjct: 197 EKSNAAGVPCDLVT----GEERVTVQPNGKQASHVSCT----------VEMCSVTTPYEV 242
Query: 1558 IVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 1617
V+DE + D P A L +
Sbjct: 243 AVIDEIQMIRD--------------------PARGWAWTRALLGLCA-----EEVHLCGE 277
Query: 1618 ATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP 1677
V L T + +R+ I + + ++
Sbjct: 278 PAAIDLVMELM-------YTTGEEVEVRDYKRLTPISVLDHALESLDN--------LRPG 322
Query: 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGG--KGQEQRELALNSLKGGSKDILVATDVA 1735
I K +++ +E G + ++G G + + + ILVATD
Sbjct: 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI 382
Query: 1736 GRGIDIKDVSMVINYDMAKSIEDYTHRIGRT-------------GRAGKEGLAVSFCT 1780
G G+++ + +I Y + K + R GRAG+
Sbjct: 383 GMGLNL-SIRRIIFYSLIKP--SINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE 437
Score = 34.5 bits (78), Expect = 0.40
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 16/74 (21%)
Query: 22 LQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIE 81
+Q + I T SGKT I + A G Y P + LA +I
Sbjct: 153 MQRKIIFHSGPTNSGKTYH-------------AIQKYFSAKSGVYC---GPLKLLAHEIF 196
Query: 82 EETNKFGTPLGIRT 95
E++N G P + T
Sbjct: 197 EKSNAAGVPCDLVT 210
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 37.6 bits (87), Expect = 0.040
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 1003 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1062
+ FV K ++ +A+ L++ G L+ + K G D ++ TD++
Sbjct: 413 TVWFVASVKMSNEIAQCLQRAGKRVIQLN---RKSYDT-EYPKCKNGDWDFVITTDISEM 468
Query: 1063 GIDIKDVSMVI---------NYDMAKSIEDYTH-----------RIGRTGRAGKEGLAVS 1102
G + S VI D + + R GR GR +
Sbjct: 469 GANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR-NPSQIGDE 526
Query: 1103 FCTKDD 1108
+
Sbjct: 527 YHYGGG 532
Score = 37.6 bits (87), Expect = 0.040
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 1678 VIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGR 1737
+ FV K ++ +A+ L++ G L+ + K G D ++ TD++
Sbjct: 413 TVWFVASVKMSNEIAQCLQRAGKRVIQLN---RKSYDT-EYPKCKNGDWDFVITTDISEM 468
Query: 1738 GIDIKDVSMVI---------NYDMAKSIEDYTH-----------RIGRTGRAGKEGLAVS 1777
G + S VI D + + R GR GR +
Sbjct: 469 GANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR-NPSQIGDE 526
Query: 1778 FCTKDD 1783
+
Sbjct: 527 YHYGGG 532
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 36.2 bits (84), Expect = 0.10
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 9 EPTPIQRQ---AIPIGLQNRDIIGV-AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 64
E Q + + LQ + + + TGSGKT+ L L + ++
Sbjct: 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS-----------ERK 51
Query: 65 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 100
+ + T +Q+ +E + + IR + + G
Sbjct: 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87
Score = 36.2 bits (84), Expect = 0.10
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 750 EPTPIQRQ---AIPIGLQNRDIIGV-AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 805
E Q + + LQ + + + TGSGKT+ L L + ++
Sbjct: 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS-----------ERK 51
Query: 806 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 841
+ + T +Q+ +E + + IR + + G
Sbjct: 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87
Score = 36.2 bits (84), Expect = 0.10
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 1425 EPTPIQRQ---AIPIGLQNRDIIGV-AETGSGKTLAFLLPLLVWIQSLPKIARMEDADQG 1480
E Q + + LQ + + + TGSGKT+ L L + ++
Sbjct: 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS-----------ERK 51
Query: 1481 PYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVG 1516
+ + T +Q+ +E + + IR + + G
Sbjct: 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 35.5 bits (81), Expect = 0.12
Identities = 8/109 (7%), Positives = 22/109 (20%)
Query: 356 SKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR 415
+ + + + + +V+ + T ER
Sbjct: 41 LQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILP 100
Query: 416 EREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYE 464
+ R R ++ + E G + +
Sbjct: 101 KPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKI 149
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 35.1 bits (81), Expect = 0.14
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 443 RERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEA 502
++ E+A+ + + E Q A +E E AEE A
Sbjct: 5 EKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAE--KAPTAEELA 62
Query: 503 RSKPKFLTKEERAAEA----LRKRQAEVEEMRKKMEEERKKRQEFTKE 546
+K + E + +E LR A+ E R++ +E + +++ +
Sbjct: 63 AAKAQIAELEAKLSEMEHRYLRL-YADFENFRRRTRQEMEAAEKYRAQ 109
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 34.3 bits (79), Expect = 0.25
Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 451 SGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLT 510
S + K+ + + E + E + A+ ++ +E +A +A+
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAE-------- 53
Query: 511 KEERAAEALRKRQAEVEEMRKKMEEERKKRQEF 543
+ R + + + +AE+E +R++ E + +K +F
Sbjct: 54 AQTRERDGILRVKAEMENLRRRTELDIEKAHKF 86
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 34.6 bits (79), Expect = 0.28
Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 2/220 (0%)
Query: 390 ERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEE 449
+ D + + D + DRS++ E E ++ D D+ ++ +E+
Sbjct: 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71
Query: 450 ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFL 509
K + + + + EEE A + + A+K A+E R
Sbjct: 72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIE 131
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKE-ASFESKRENFDARLRRDREKKK 568
++ ++ E + ++ +++E + E+ +K +E ++ ES E + R K
Sbjct: 132 SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 191
Query: 569 EDPEEKELNKDKEREGEAIKERYLGLVKK-KRRVRRLNDR 607
E EE + + + EA E+Y K + ++ L+D+
Sbjct: 192 ELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK 231
Score = 30.4 bits (68), Expect = 5.8
Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 10/219 (4%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
+ + + ++ TD D +R E + R +ER ++ E+
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA 494
+ + E A + K +E + + D + A+K + +L
Sbjct: 121 DESER--GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178
Query: 495 KKKAEEEARSKPKFLTKE----ERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFE 550
++ E + K L +E ++L + + + K EEE K + KEA E
Sbjct: 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA--E 236
Query: 551 SKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKE 589
++ E + + + + + E EL K + +E
Sbjct: 237 TRAEFAERSVTKLEKSIDD--LEDELYAQKLKYKAISEE 273
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 34.4 bits (78), Expect = 0.41
Identities = 33/276 (11%), Positives = 68/276 (24%), Gaps = 16/276 (5%)
Query: 440 GYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAE 499
+ ++ + P + + K+EPLS EE A K
Sbjct: 370 SFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQL 429
Query: 500 EEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDAR 559
+E + + + + E + Q+ E +
Sbjct: 430 KEKKRDRNKKILLVKRESKKLANGNAIID--DTNGERAMRNQDILVENVNGVPPIDHIMG 487
Query: 560 LRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVF-----DWD 614
D ++++E+ L KD + A K + + + + F F D
Sbjct: 488 GDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKKD 547
Query: 615 ASEDTSVDYNSI--YKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQ 672
DY ++ + + + E K E
Sbjct: 548 -------DYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNM 600
Query: 673 EKVRLKKVKKREEKQKWDDRHWTEKSLDEMTERDWR 708
K+ K R + ++ D +
Sbjct: 601 SDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKID 636
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 34.4 bits (79), Expect = 0.44
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 519 LRKRQAEVEEMRKKMEEERKKRQEF---------TKEASFESKRENFDARLRRDREKKKE 569
L+ Q E E K+++E K+ EF TKE E + + ++++K+
Sbjct: 177 LKDDQLEYLE-EKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKK 235
Query: 570 DPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKE 629
D ++K+ ++ E E K + + ++ + + LN K ++ + S+ T +YN+ YK
Sbjct: 236 DEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKS 295
Query: 630 RHQ 632
Sbjct: 296 ISN 298
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 32.7 bits (74), Expect = 0.46
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 483 KKEPLSLEELLAKKKAEEEARSK------PKFLTKEERAAEALRKRQAEVEEMRKKMEEE 536
++ SLEE+ K +A EE R K E E ++K E K +E+
Sbjct: 39 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 98
Query: 537 RKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKER 582
++ E KE E+ RL+ + +E + KEL ++ R
Sbjct: 99 LAQKMESNKENR-EAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 143
Score = 29.6 bits (66), Expect = 4.2
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 450 ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFL 509
S + P + +E + K AA++ E L K AE
Sbjct: 23 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAE---------- 72
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKE 569
K E E ++K E K +E+ ++ E KE RE A + ++K +
Sbjct: 73 -KREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE-----NREAHLAAMLERLQEKDK 126
Query: 570 DPEEKELNKDKERE 583
EE NK+ + E
Sbjct: 127 HAEEVRKNKELKEE 140
Score = 28.9 bits (64), Expect = 8.4
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 487 LSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKE 546
S E +L + + + + E ++K+ EE RK E E K +E
Sbjct: 16 QSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 75
Query: 547 ASFESKRE------NFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
E ++ NF + +K E +E +E A+ ER K
Sbjct: 76 HEREVIQKAIEENNNFIKMAKEKLAQKMESNKEN-----REAHLAAMLERLQEKDKHAEE 130
Query: 601 VRRLNDRK 608
VR+ + K
Sbjct: 131 VRKNKELK 138
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 33.7 bits (76), Expect = 0.71
Identities = 25/157 (15%), Positives = 55/157 (35%), Gaps = 16/157 (10%)
Query: 461 EGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA---KKKAEEEARSKPKFLTKEERAAE 517
+G E + + + L+ + +A +E + K L K R E
Sbjct: 568 KGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE 627
Query: 518 ALR----KRQAEVEEMRKKMEEERKKRQE-------FTKEASFESKRENFDARLRRDREK 566
L K+ + KME + + + KEA+ +++ + L+ + +
Sbjct: 628 HLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRE 687
Query: 567 KKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRR 603
+ E +++KD + ++ E G K +
Sbjct: 688 LSDKLE--KISKDLKDFSKSFDEFKNGKNKDFSKAEE 722
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 33.6 bits (77), Expect = 0.79
Identities = 23/203 (11%), Positives = 52/203 (25%), Gaps = 21/203 (10%)
Query: 512 EERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDP 571
+ KRQ +E +++ + ++ + ++ ++ + + +E
Sbjct: 140 AILNGVPVEKRQLLTDEEYRELRYGK--QETYPLPPGVDALVKD-GEEVVKGQELAPGVV 196
Query: 572 EEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERH 631
+ E VKK+R RL E + I E
Sbjct: 197 SRLDGVALYRFPRRVRVEY----VKKERAGLRLP------LAAWVEKEAYKPGEILAELP 246
Query: 632 QVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEA--------EKEQEKVRLKKVKKR 683
+ F +++K + E T E V +
Sbjct: 247 EPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAE 306
Query: 684 EEKQKWDDRHWTEKSLDEMTERD 706
+ R ++ E +
Sbjct: 307 AKGLLRMPRQVRAAQVEAEEEGE 329
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.81
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 102 LSREEQG---------FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 152
++RE + L C P ++++ +V C ++ +D+++D
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL---SDKLVD 58
Query: 153 MGFE 156
E
Sbjct: 59 TRSE 62
Score = 32.7 bits (74), Expect = 0.81
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 843 LSREEQG---------FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 893
++RE + L C P ++++ +V C ++ +D+++D
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL---SDKLVD 58
Query: 894 MGFE 897
E
Sbjct: 59 TRSE 62
Score = 32.7 bits (74), Expect = 0.81
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 1518 LSREEQG---------FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID 1568
++RE + L C P ++++ +V C ++ +D+++D
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL---SDKLVD 58
Query: 1569 MGFE 1572
E
Sbjct: 59 TRSE 62
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 32.7 bits (74), Expect = 0.88
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 18/137 (13%)
Query: 478 KGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEER 537
K A+ + + + K E + L++ EV++ ++ +
Sbjct: 60 KSASNYSQLGTFAPVWDVFKTSTEKLANCH-----LDLVRKLQELIKEVQKYGEEQVKSH 114
Query: 538 KKRQEF------------TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGE 585
KK +E + + + +EN++A+ KKE ++E+ K + +
Sbjct: 115 KKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKK 174
Query: 586 AIKERYLGLVKKKRRVR 602
A + Y V+K +
Sbjct: 175 A-TDTYKLYVEKYALAK 190
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 32.3 bits (74), Expect = 0.92
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 467 EQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEV 526
E+ + E A +E +LEE L + E + K K+L R A+
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKG-LKDKYL----RL-------LADF 49
Query: 527 EEMRKKMEEERKKRQEFTKE 546
+ RK+MEEE K R+
Sbjct: 50 DNYRKRMEEELKAREREGVL 69
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 32.9 bits (75), Expect = 1.1
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 516 AEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKE 575
+A+ + + E E MRKK EEE ++ + EA + +RE R R+ R+ K+ E E
Sbjct: 385 LQAVSEAKQENENMRKKKEEEERRAR---MEAQLKEQRE----RERKMRKAKENSEESGE 437
Query: 576 LNKDKE--REGEAIKERYLGLVKKKRRVRR 603
+ R GE + L + ++R+
Sbjct: 438 FDDLVSALRSGEVFDKDLSKLKRNRKRITN 467
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 32.6 bits (73), Expect = 1.4
Identities = 29/248 (11%), Positives = 72/248 (29%), Gaps = 37/248 (14%)
Query: 376 RRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHH---RRDRSKER 432
+ ++E R+ D L+ + + + + + +R S E
Sbjct: 431 IEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNEL 490
Query: 433 DGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEEL 492
R EG ++A + + ++ Y+ + L
Sbjct: 491 YKPLRAEGTNFRTVLDKAVQADGQVKEC--YQSHRDTI--------------------VL 528
Query: 493 LAKKKAEEEAR---SKPKFLTKEERAAEALRKRQAEVEEM---RKKMEEERKKRQ---EF 543
L K + E A + P + L+ + ++E+ R+ +E + K
Sbjct: 529 LCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTS 588
Query: 544 TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGE---AIKERYLGLVKKKRR 600
+ + L + ++ + +++ I+ + K K+
Sbjct: 589 KFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQS 648
Query: 601 VRRLNDRK 608
N R+
Sbjct: 649 NNEANLRE 656
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 32.2 bits (72), Expect = 1.6
Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 468 QMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVE 527
Q + +EE++ + + + L + + +++ + L+ Q E
Sbjct: 8 QPIPPEEEKEISSLLESIKIGKTSLKYRCFYLYD-DKMTDLTEEQKETLKKLKLYQKEYY 66
Query: 528 EMRKKMEEERKK--RQEFTKEASFESKRENFDARLRRDREKKKEDPE 572
+ K E E ++ KR + PE
Sbjct: 67 DYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPE 113
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.3 bits (73), Expect = 1.6
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 646 IKAQKRDQSKFYGEMLEKR-RTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 701
K + Y M +K +A++E K KK + +K D E+ E
Sbjct: 398 AKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPE 454
Score = 32.3 bits (73), Expect = 1.6
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 1321 IKAQKRDQSKFYGEMLEKR-RTEAEKEQEKVRLKKVKKREEKQKWDDRHWTEKSLDE 1376
K + Y M +K +A++E K KK + +K D E+ E
Sbjct: 398 AKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPE 454
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.0 bits (72), Expect = 1.8
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 858 IVIATPG------RLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVT 910
++I +L +R+ + C YI D+ +M+D +G + + +L M ++
Sbjct: 168 MLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDIS 227
Query: 911 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 960
+ + E+ + L +T F AT PP + L+ P
Sbjct: 228 DCFI--DGNENGDLLWDFLT------ETCNFNATAPPDLRAELGKDLQEP 269
Score = 32.0 bits (72), Expect = 1.8
Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 1533 IVIATPG------RLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVT 1585
++I +L +R+ + C YI D+ +M+D +G + + +L M ++
Sbjct: 168 MLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTMDIS 227
Query: 1586 NLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRP 1635
+ + E+ + L +T F AT PP + L+ P
Sbjct: 228 DCFI--DGNENGDLLWDFLT------ETCNFNATAPPDLRAELGKDLQEP 269
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 31.2 bits (70), Expect = 2.0
Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 5/143 (3%)
Query: 445 RREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKA--EEEA 502
R E + + KS + ++ ++ E +++ + ++ + +A E E
Sbjct: 23 RTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAER 82
Query: 503 RSKPKFLTKEERAAEALRKRQAEVEEMRK---KMEEERKKRQEFTKEASFESKRENFDAR 559
R + + Q EV+ ++ K+E ERK+ Q+ + E D
Sbjct: 83 RDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN 142
Query: 560 LRRDREKKKEDPEEKELNKDKER 582
+ +++ + E E K R
Sbjct: 143 YKLKSLQQRLEQEVNEHKVTKAR 165
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 30.6 bits (69), Expect = 2.1
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 492 LLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFES 551
LL + E+E S + T+ + A E R+ E+EE + +E+ Q +A ++
Sbjct: 5 LLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL-QVQAEQDN 63
Query: 552 KRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
+ + + + K + + + KE+NK E E E E L KKR+
Sbjct: 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE----LTAKKRK 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.2 bits (70), Expect = 2.4
Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%)
Query: 487 LSLEELLAKKKA-EEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
+ + L + + E R K K L K EA K +EE + ++ + K ++ +
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70
Query: 546 EASFESKRENFDARL---RRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVR 602
+ +K + ++ + +RE + + EE + + I+ + +K +
Sbjct: 71 DT--NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128
Query: 603 RLNDR 607
L
Sbjct: 129 DLKKE 133
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena
thermophila} PDB: 2xzn_2
Length = 208
Score = 31.3 bits (70), Expect = 2.4
Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 551 SKRENFDARLRRDREKKK-EDPEEKELNKDKEREGEAIKERYLGLVK-----KKRRVRRL 604
KR R+ R+K+ E + K + ++R + V+ K R RL
Sbjct: 9 HKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEKRRIRPVRVRGGHLKFRALRL 68
Query: 605 NDRKFVFDWDA----SEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEM 660
+ F + + ++ V YN+ E + + + +I ID + YG
Sbjct: 69 CEGNFSWGSENITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGID 128
Query: 661 LEKRRTEAEKEQEKVRLKKVKKREEKQK 688
L ++ + K + + V+KR ++ K
Sbjct: 129 LGLKK-DRTVLGNKEKSRHVQKRVKRTK 155
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 31.5 bits (71), Expect = 2.5
Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 30/212 (14%)
Query: 486 PLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK 545
PL L EL + E+ + A + + K + + EM+K EE +
Sbjct: 168 PLLLRELF--ALTDAESEEHYHL----DVAIKTMNKVASHINEMQKIHEEFGAVFDQLIA 221
Query: 546 EASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGL-------VKKK 598
E + E K + + + + E + V K
Sbjct: 222 EQTGEKK----EVADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKD 277
Query: 599 RRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKA-QKRDQSKFY 657
++ + SIY+E +F + ++A D
Sbjct: 278 GSKQK------------KKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANA 325
Query: 658 GEMLEKRRTEAEKEQEKVRLKKVKKREEKQKW 689
+ ++E+E E+V E ++ +
Sbjct: 326 VCEIVHVKSESEGRPERVFHLCCSSPESRKDF 357
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_7
Length = 162
Score = 30.4 bits (68), Expect = 2.8
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 406 RDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASG 452
+ + ++ E ++ ++ R+ ERDG+++R R RRE E +
Sbjct: 97 VNFISKEEDEEERPRRQFNKGGRTGERDGRNKRGVGRGTRREGEEAA 143
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.8 bits (72), Expect = 2.8
Identities = 26/242 (10%), Positives = 78/242 (32%), Gaps = 21/242 (8%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
++ +++ D + + + + R+ +
Sbjct: 791 ILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAY 850
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGY-EPTEQMVI-SDEEEDKGAAAKKEPLSLEEL 492
D R+ RRE+ E+ S D + + I D ++ E+
Sbjct: 851 NDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEM 910
Query: 493 LAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEE------RKKRQEFTK- 545
+ ++ + RS KE + +++ + + + + R++++E
Sbjct: 911 I--EEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEAL 968
Query: 546 ----EASFESKRENFDARLRRDREKKKED------PEEKELNKDKEREGEAIKERYLGLV 595
+ ++ + L+R+ + P+ LN + + +A+ ++ + +
Sbjct: 969 IKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFI 1028
Query: 596 KK 597
+K
Sbjct: 1029 EK 1030
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 31.4 bits (70), Expect = 3.0
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 467 EQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEV 526
Q+V+ D + + +E L+ + + + + ++ +
Sbjct: 300 SQIVLHKNGTDPDFKCRHLQIDIERLVDQ-------------MIDKTKVEKSEA----KA 342
Query: 527 EEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKE 569
E+ KK++ E R E + + +F+ +L+ + +K
Sbjct: 343 TELEKKLDSELTARHE--LQVEMKKMENDFEQKLQDLQGEKDA 383
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase,
SR protein, PRE-mRNA splicing, at binding, chromosome
partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP:
d.58.7.1 PDB: 2o3d_A 1wg4_A
Length = 115
Score = 29.8 bits (67), Expect = 3.0
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 377 RSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSR 415
RS E Y RV+ R R R R R R RSR
Sbjct: 77 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSR-SRSRSR 114
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.5 bits (71), Expect = 3.2
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 396 SRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKH 455
S +RG LE ++ E R K + D+ KE+ GK+ E Y E A
Sbjct: 89 SPGERGIQAKLKELEDEQRNELVRLKYN---DKIKEKFGKELEEVYNFMNGEANA----- 140
Query: 456 KSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERA 515
E + + +++ +E L + L + E R+ E
Sbjct: 141 -----EIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTH-----AETVM 190
Query: 516 AEALRKRQAEVEEMRKKMEEERKKRQE 542
+ R + ++ ++ +E ER QE
Sbjct: 191 VKEYRDK---IDALKNAIEVERDGMQE 214
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.0 bits (69), Expect = 3.2
Identities = 17/104 (16%), Positives = 38/104 (36%)
Query: 475 EEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKME 534
E+ K A L + K +++ + P+ L K+ R L+ ++ + K +
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLR 65
Query: 535 EERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNK 578
+ R+K + + R+ + +R R +K
Sbjct: 66 KARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEP 109
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 31.4 bits (70), Expect = 3.2
Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 12/165 (7%)
Query: 453 SKHKSRDKEGYEPTEQMVISDEEEDKGAAA-----KKEPLSLEELLAKKKAEEEARSKP- 506
+ + + ++++ G +PL L+ + + + S
Sbjct: 26 ASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQPLLLQSIQDRLGSLVGQDSGYV 85
Query: 507 KFLTKEER-AAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDRE 565
L K + +L+ Q+E+ E+ K+ + E + E F K + + R
Sbjct: 86 GGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFE-----LENKFLQKYKPIWEQRSRIIS 140
Query: 566 KKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFV 610
+++ E+ + E E + +K + K +
Sbjct: 141 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 185
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_I
Length = 200
Score = 30.4 bits (68), Expect = 3.5
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 597 KKRRVRRLNDRKFVFDWDA----SEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRD 652
KK R R+ F + + + V Y+ E + + I ID ++
Sbjct: 53 KKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQW 112
Query: 653 QSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQK 688
YG+ L K++ E+E +K +
Sbjct: 113 FEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAA 148
Score = 30.4 bits (68), Expect = 3.5
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 1272 KKRRVRRLNDRKFVFDWDA----SEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRD 1327
KK R R+ F + + + V Y+ E + + I ID ++
Sbjct: 53 KKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQW 112
Query: 1328 QSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREEKQK 1363
YG+ L K++ E+E +K +
Sbjct: 113 FEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAA 148
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 31.4 bits (71), Expect = 3.8
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 492 LLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFES 551
L+ +K+ + E + LR +A+V++++ + ++ ++ ++A
Sbjct: 1907 LINEKRDQLEEEQL-----HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA--NQ 1959
Query: 552 KRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKE 589
K + + K+K+ E + + +E K
Sbjct: 1960 KLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV 1997
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 29.6 bits (66), Expect = 4.2
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 1181 AGDRRSRSRSPARKRRSRSRDRDYDRRFKRKKSPQC 1216
+RS++RS K + R + + C
Sbjct: 3 GSKQRSQNRSKTPKNQEALRMANVAENSSSDQRQAC 38
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 4.6
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 459 DKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEA 518
D + ++ D AA + +E + +K EE R + +E A +
Sbjct: 66 DMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKR-----LQELDAAS 120
Query: 519 LRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDRE 565
Q E+ +K +EE +++ E E + + R D + +
Sbjct: 121 KVMEQEWREKAKKDLEEWNQRQSE-QVEKNKINNRIA-DKAFYQQPD 165
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 28.9 bits (64), Expect = 5.6
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 507 KFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREK 566
T+ +R L+ V E+ + E++ RQ+ + E A L R +
Sbjct: 33 NMKTESQRVVLQLKGH---VSELEADLAEQQHLRQQAADD------CEFLRAELDELRRQ 83
Query: 567 KKEDPEEKELNKDKEREGEAIKERYLGLVKK 597
+++ + + + ER+ +A ++RY L +K
Sbjct: 84 REDTEKAQRSLSEIERKAQANEQRYSKLKEK 114
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 30.8 bits (70), Expect = 5.8
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 605 NDRKFV---FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAG--IDIKAQKRDQSKFYGE 659
+D+++ F W ++DTS+ + Y + G + K + F E
Sbjct: 261 DDKQYFAPSFTWKPNDDTSLTLLADYTQDTFGAPRVFLPAQGTLLGNPNGKVRHNVFLDE 320
Score = 30.8 bits (70), Expect = 5.8
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 1280 NDRKFV---FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAG--IDIKAQKRDQSKFYGE 1334
+D+++ F W ++DTS+ + Y + G + K + F E
Sbjct: 261 DDKQYFAPSFTWKPNDDTSLTLLADYTQDTFGAPRVFLPAQGTLLGNPNGKVRHNVFLDE 320
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural
genomics, protein structure initiativ midwest center for
structural genomics; HET: MSE; 2.10A {Helicobacter
pylori}
Length = 229
Score = 30.1 bits (68), Expect = 6.4
Identities = 14/82 (17%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 256 ERLARSY-LRRPATVYIGSVGKPT-ERIEQ---IVYILSEQDKRKKLMEVLNRGVKKPVI 310
E L S L+ + ++ +PT + ++ V + E+ K+ ++ + ++K +
Sbjct: 54 ETLKNSPKLKMLQNIPAYALSEPTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSV 113
Query: 311 IFVNQKKGADVLAKGLEKLGYN 332
+++ K+ L L + G +
Sbjct: 114 LYLRAKEIVSSLDTILLEHGID 135
Score = 30.1 bits (68), Expect = 6.4
Identities = 14/82 (17%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 950 ERLARSY-LRRPATVYIGSVGKPT-ERIEQ---IVYILSEQDKRKKLMEVLNRGVKKPVI 1004
E L S L+ + ++ +PT + ++ V + E+ K+ ++ + ++K +
Sbjct: 54 ETLKNSPKLKMLQNIPAYALSEPTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSV 113
Query: 1005 IFVNQKKGADVLAKGLEKLGYN 1026
+++ K+ L L + G +
Sbjct: 114 LYLRAKEIVSSLDTILLEHGID 135
Score = 30.1 bits (68), Expect = 6.4
Identities = 14/82 (17%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 1625 ERLARSY-LRRPATVYIGSVGKPT-ERIEQ---IVYILSEQDKRKKLMEVLNRGVKKPVI 1679
E L S L+ + ++ +PT + ++ V + E+ K+ ++ + ++K +
Sbjct: 54 ETLKNSPKLKMLQNIPAYALSEPTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSV 113
Query: 1680 IFVNQKKGADVLAKGLEKLGYN 1701
+++ K+ L L + G +
Sbjct: 114 LYLRAKEIVSSLDTILLEHGID 135
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 29.6 bits (65), Expect = 6.4
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 1/160 (0%)
Query: 388 VRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERRE 447
+ + R ++ R LE ++ + RERE + + + RE
Sbjct: 11 LSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTS 70
Query: 448 EEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPK 507
+ K + E+ ++ ++E+ AA KE E L K++ EEE K
Sbjct: 71 DAILKMKAYIKVVAIQLSEEEEKVNKQKENV-LAASKELERAEVELTKRRKEEEKTRLHK 129
Query: 508 FLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEA 547
+E E R+ + E +EM + + + K++Q + E
Sbjct: 130 EEWMKEALKEEARQEEKEQDEMGQLLHQLHKQKQRESGEN 169
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.7 bits (66), Expect = 6.7
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 506 PKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDRE 565
P+ + K+ E LRK +AE + ++RK + + R+
Sbjct: 6 PENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Query: 566 KKKEDPEEKELNK 578
+K
Sbjct: 66 ARKTGAFYVPAEA 78
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 30.3 bits (69), Expect = 6.7
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKERE 583
E+E+M+ K EE+R + E + + E + R ++ + E L E
Sbjct: 10 KEMEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIE 69
Query: 584 GEAIK 588
I
Sbjct: 70 EHRIC 74
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 30.2 bits (67), Expect = 6.8
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 13/156 (8%)
Query: 461 EGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAE---EEARSKPKFLTKEERAAE 517
+G E + + + L+ + +A+ K+ +E + K L K R E
Sbjct: 308 KGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE 367
Query: 518 ALRKRQAEV----EEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEE 573
L K + + KME + + + + + +K N DAR
Sbjct: 368 HLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDAR------AIAYTQNL 421
Query: 574 KELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKF 609
K + ++ + E I + K + ++ F
Sbjct: 422 KGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDF 457
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 29.2 bits (65), Expect = 7.3
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 414 SREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKH 455
+ R ++ R ++ +D E + + KH
Sbjct: 4 TSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTACRKH 45
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
receptor, integral outer membrane protein,
ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 30.4 bits (69), Expect = 7.3
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 605 NDRKFV---FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAG--IDIKAQKRDQSKFYGE 659
R + F W + T+ + S ++ + ++G G + KR + F
Sbjct: 210 EQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEG 269
Score = 30.4 bits (69), Expect = 7.3
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 1280 NDRKFV---FDWDASEDTSVDYNSIYKERHQVQFFGRGNIAG--IDIKAQKRDQSKFYGE 1334
R + F W + T+ + S ++ + ++G G + KR + F
Sbjct: 210 EQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEG 269
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 29.8 bits (68), Expect = 8.0
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 515 AAEALRKRQAEVEEMRKKMEEERK 538
A AL Q +E R +EE
Sbjct: 263 AQLALAHYQEILERNRHILEENLA 286
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 30.1 bits (68), Expect = 8.4
Identities = 11/99 (11%), Positives = 21/99 (21%), Gaps = 3/99 (3%)
Query: 371 SPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSK 430
P R R ++ + +D + R + + S R S
Sbjct: 141 GPYEARERADVFRRFNIQMVEEMAMVEND---TKARAAVYKRTSAMLSEIITEDREHLSL 197
Query: 431 ERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQM 469
+ + + S G P
Sbjct: 198 IQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGSS 236
Score = 29.7 bits (67), Expect = 9.2
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 9/122 (7%)
Query: 345 RELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSRERDYDRVRE----RDTDRSRDDR 400
RE +LK G + G + R+R R + V E + ++R
Sbjct: 121 RETFEGALKTGRLALESLGLGPYEA----RERADVFRRFNIQMVEEMAMVENDTKARAAV 176
Query: 401 GRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDK 460
+ R L + +RE R +GK + ++ R
Sbjct: 177 YK-RTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGS 235
Query: 461 EG 462
G
Sbjct: 236 SG 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.380
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 28,645,939
Number of extensions: 1895347
Number of successful extensions: 7504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6429
Number of HSP's successfully gapped: 643
Length of query: 1832
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1725
Effective length of database: 3,714,246
Effective search space: 6407074350
Effective search space used: 6407074350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.4 bits)