RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6409
(1832 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 172 bits (437), Expect = 6e-49
Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 23/257 (8%)
Query: 712 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 769
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 3 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62
Query: 770 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 829
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 63 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 122
Query: 830 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 889
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 123 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 182
Query: 890 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 949
RM+DMGFEP ++KI+E RQT+MF+AT P +
Sbjct: 183 RMLDMGFEPQIRKIIEES---------------------NMPSGINRQTLMFSATFPKEI 221
Query: 950 ERLARSYLRRPATVYIG 966
++LA +L + +G
Sbjct: 222 QKLAADFLYNYIFMTVG 238
Score = 172 bits (437), Expect = 6e-49
Identities = 92/257 (35%), Positives = 136/257 (52%), Gaps = 23/257 (8%)
Query: 1387 EDYSITIKG--GKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDII 1444
+ +++ G + + N+ E L I I Y PTPIQ+ AIP L++RDI+
Sbjct: 3 DSIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIM 62
Query: 1445 GVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFG 1504
A+TGSGKT AFL+P++ + + P +I+APTRELA QI E+ KF
Sbjct: 63 ACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 122
Query: 1505 TPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 1564
+R+ +V GG Q +++GC +++ATPGRL+D +E + L C YIVLDEAD
Sbjct: 123 LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEAD 182
Query: 1565 RMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAV 1624
RM+DMGFEP ++KI+E RQT+MF+AT P +
Sbjct: 183 RMLDMGFEPQIRKIIEES---------------------NMPSGINRQTLMFSATFPKEI 221
Query: 1625 ERLARSYLRRPATVYIG 1641
++LA +L + +G
Sbjct: 222 QKLAADFLYNYIFMTVG 238
Score = 130 bits (326), Expect = 3e-34
Identities = 87/271 (32%), Positives = 124/271 (45%), Gaps = 68/271 (25%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I Y PTPIQ+ AIP L++RDI+ A+TGSGKT AFL+P++ + +
Sbjct: 36 ILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSK 95
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P +I+APTRELA QI E+ KF +R+ +V GG Q +++GC +++AT
Sbjct: 96 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVAT 155
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGRL+D +E + L C YIVLDEADRM+DMGFEP ++KI+E
Sbjct: 156 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES--------------- 200
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
RQT+M
Sbjct: 201 ------NMPSGINRQTLM------------------------------------------ 212
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
F+AT P +++LA +L + +G
Sbjct: 213 -----FSATFPKEIQKLAADFLYNYIFMTVG 238
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 166 bits (421), Expect = 3e-47
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 787
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP-- 62
Query: 788 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 847
+ + + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 63 --------LIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
Q L+ IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 115 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 N-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFI 204
Score = 166 bits (421), Expect = 3e-47
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 37/236 (15%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLL 1462
N+ E +L IL I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP-- 62
Query: 1463 VWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREE 1522
+ + + + G AII+ PTRELA Q+ +E ++ + GG +
Sbjct: 63 --------LIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYP 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
Q L+ IV+ TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 115 QIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 173
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 N-------------------------KDKRILLFSATMPREILNLAKKYMGDYSFI 204
Score = 136 bits (343), Expect = 9e-37
Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 37/206 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNR-DIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I G+ +PT IQ + IP+ L + +I+ A TGSGKT +F +P + + +
Sbjct: 19 IRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP----------LIELVN 68
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+ G AII+ PTRELA Q+ +E ++ + GG + Q L+ IV+
Sbjct: 69 ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVG 127
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D + L L Y +LDEAD M++MGF DV+KIL
Sbjct: 128 TPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------- 174
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K ++ ++F+ATMP
Sbjct: 175 ------------KDKRILLFSATMPR 188
Score = 47.7 bits (113), Expect = 3e-06
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATV 269
K ++ ++F+ATMP + LA+ Y+ + +
Sbjct: 174 NKDKRILLFSATMPREILNLAKKYMGDYSFI 204
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 160 bits (406), Expect = 4e-45
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 35/245 (14%)
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ +L I+ + A+++APTRELAQQI++ G +G +GG
Sbjct: 67 AISILQQIELDL---------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 117
Query: 843 LSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 901
+ + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 118 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 902 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 961
I + + Q V+ +ATMP V + + ++R P
Sbjct: 178 DIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPI 212
Query: 962 TVYIG 966
+ +
Sbjct: 213 RILVK 217
Score = 160 bits (406), Expect = 4e-45
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 35/245 (14%)
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457
+ V ++ + +L +L I G+ +P+ IQ++AI ++ D+I A++G+GKT F
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ +L I+ + A+++APTRELAQQI++ G +G +GG
Sbjct: 67 AISILQQIELDL---------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG 117
Query: 1518 LSREEQGFRLRLG-CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 1576
+ + +L++ I++ TPGR+ D+L RYL VLDEAD M+ GF+ +
Sbjct: 118 TNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 177
Query: 1577 KILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPA 1636
I + + Q V+ +ATMP V + + ++R P
Sbjct: 178 DIFQKLN-------------------------SNTQVVLLSATMPSDVLEVTKKFMRDPI 212
Query: 1637 TVYIG 1641
+ +
Sbjct: 213 RILVK 217
Score = 120 bits (302), Expect = 4e-31
Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 82/272 (30%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ D+I A++G+GKT F + +L I+
Sbjct: 27 IYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL-------- 78
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGC-EIVIA 120
+ A+++APTRELAQQI++ G +G +GG + + +L++ I++
Sbjct: 79 -KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVG 137
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR+ D+L RYL VLDEAD M+ GF+ + I + +
Sbjct: 138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------- 184
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKK 240
Q V+
Sbjct: 185 ------------SNTQVVLL---------------------------------------- 192
Query: 241 YRQTVMFTATMPPAVERLARSYLRRPATVYIG 272
+ATMP V + + ++R P + +
Sbjct: 193 -------SATMPSDVLEVTKKFMRDPIRILVK 217
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 155 bits (393), Expect = 2e-43
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 716 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 775
+ + + D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G
Sbjct: 5 VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSG 64
Query: 776 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 835
+GKT F S+ + ++ + A+I+APTRELA QI++ G + ++
Sbjct: 65 TGKTATF---------SISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 115
Query: 836 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 895
+GG + E +L G +V TPGR+ D++ R L +VLDEAD M++ G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 896 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 955
F+ + + Y+P Q V+ +AT+P + +
Sbjct: 176 FKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNK 210
Query: 956 YLRRPATVYIG 966
++ P + +
Sbjct: 211 FMTDPIRILVK 221
Score = 155 bits (393), Expect = 2e-43
Identities = 61/251 (24%), Positives = 114/251 (45%), Gaps = 34/251 (13%)
Query: 1391 ITIKGGKVPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETG 1450
+ + + D + L ++L I G+ +P+ IQ++AI ++ RD+I +++G
Sbjct: 5 VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSG 64
Query: 1451 SGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIR 1510
+GKT F S+ + ++ + A+I+APTRELA QI++ G + ++
Sbjct: 65 TGKTATF---------SISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 115
Query: 1511 TVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMG 1570
+GG + E +L G +V TPGR+ D++ R L +VLDEAD M++ G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 1571 FEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARS 1630
F+ + + Y+P Q V+ +AT+P + +
Sbjct: 176 FKEQIYDVYRYLP-------------------------PATQVVLISATLPHEILEMTNK 210
Query: 1631 YLRRPATVYIG 1641
++ P + +
Sbjct: 211 FMTDPIRILVK 221
Score = 119 bits (300), Expect = 7e-31
Identities = 58/271 (21%), Positives = 105/271 (38%), Gaps = 81/271 (29%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ +P+ IQ++AI ++ RD+I +++G+GKT F S+ + ++
Sbjct: 32 IYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF---------SISVLQCLDIQ 82
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
+ A+I+APTRELA QI++ G + ++ +GG + E +L G +V T
Sbjct: 83 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGT 142
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D++ R L +VLDEAD M++ GF+ + + Y+P
Sbjct: 143 PGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP-------------- 188
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q V+
Sbjct: 189 -----------PATQVVLI----------------------------------------- 196
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
+AT+P + + ++ P + +
Sbjct: 197 ------SATLPHEILEMTNKFMTDPIRILVK 221
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 154 bits (389), Expect = 6e-43
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 723 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 782
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 64
Query: 783 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 842
+ L I + K P A+++APTRELA QI++ + I+ +GG
Sbjct: 65 SIAALQRIDTSVK---------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 843 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 902
S E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +
Sbjct: 116 TSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174
Query: 903 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 962
I +P Q V+ +ATMP V + ++R P
Sbjct: 175 IFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 209
Query: 963 VYI 965
+ +
Sbjct: 210 ILV 212
Score = 154 bits (389), Expect = 6e-43
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 35/243 (14%)
Query: 1398 VPDPVRNWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAF 1457
V + + L +L + G+ EP+ IQ++AI ++ D++ A++G+GKT F
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 64
Query: 1458 LLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGG 1517
+ L I + K P A+++APTRELA QI++ + I+ +GG
Sbjct: 65 SIAALQRIDTSVK---------APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGG 115
Query: 1518 LSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQK 1577
S E LR +IV+ TPGR+ D ++ R ++ +LDEAD M+ GF+ + +
Sbjct: 116 TSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQ 174
Query: 1578 ILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPAT 1637
I +P Q V+ +ATMP V + ++R P
Sbjct: 175 IFTLLP-------------------------PTTQVVLLSATMPNDVLEVTTKFMRNPVR 209
Query: 1638 VYI 1640
+ +
Sbjct: 210 ILV 212
Score = 117 bits (294), Expect = 3e-30
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 35/205 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
+ G+ EP+ IQ++AI ++ D++ A++G+GKT F + L I + K
Sbjct: 25 VFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK------- 77
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
P A+++APTRELA QI++ + I+ +GG S E LR +IV+ T
Sbjct: 78 --APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGT 134
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D ++ R ++ +LDEAD M+ GF+ + +I +P
Sbjct: 135 PGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP-------------- 180
Query: 182 NKLLANYNSKKKYRQTVMFTATMPP 206
Q V+ +ATMP
Sbjct: 181 -----------PTTQVVLLSATMPN 194
Score = 52.1 bits (124), Expect = 1e-07
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
Q V+ +ATMP V + ++R P + +
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 146 bits (368), Expect = 4e-40
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQ 848
+E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 63 ---------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 113
Query: 849 GFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 906
L + IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 114 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 907 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 174 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
Score = 146 bits (368), Expect = 4e-40
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 37/239 (15%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I G+ P+ +Q + IP + D++ A++G GKT F+L L
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQ 1523
+E ++M TRELA QI +E +F + ++ + GGLS ++
Sbjct: 63 ---------LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 113
Query: 1524 GFRL-RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEY 1581
L + IV+ TPGR++ + N+ L L + +LDE D+M++ + DVQ+I
Sbjct: 114 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 173
Query: 1582 MPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
P +Q +MF+AT+ + + R +++ P +++
Sbjct: 174 TP-------------------------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
Score = 113 bits (284), Expect = 6e-29
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 37/208 (17%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I G+ P+ +Q + IP + D++ A++G GKT F+L L +E
Sbjct: 16 IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ---------LEPV 66
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLG-IRTVLVVGGLSREEQGFRL-RLGCEIVI 119
++M TRELA QI +E +F + ++ + GGLS ++ L + IV+
Sbjct: 67 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVV 126
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-MGFEPDVQKILEYMPVTNLKPDTEDA 178
TPGR++ + N+ L L + +LDE D+M++ + DVQ+I P
Sbjct: 127 GTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP----------- 175
Query: 179 EDENKLLANYNSKKKYRQTVMFTATMPP 206
+Q +MF+AT+
Sbjct: 176 --------------HEKQVMMFSATLSK 189
Score = 53.4 bits (127), Expect = 4e-08
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYI 271
+Q +MF+AT+ + + R +++ P +++
Sbjct: 175 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 144 bits (363), Expect = 2e-38
Identities = 57/365 (15%), Positives = 93/365 (25%), Gaps = 89/365 (24%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 884 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 943
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 944 TMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1003
T P + + +S I + E+ V +
Sbjct: 140 TPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHEWVTDFK--GKT 181
Query: 1004 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1063
+ FV K + +A L K G L + + D +V TD++ G
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMG 237
Query: 1064 IDIK---------DVSMVINYD----------MAKSIEDYTHRIGRTGRAGKEGLAVSFC 1104
+ K + VI D M + R GR GR K
Sbjct: 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297
Query: 1105 TKDDS 1109
+
Sbjct: 298 MGEPL 302
Score = 144 bits (363), Expect = 2e-38
Identities = 57/365 (15%), Positives = 93/365 (25%), Gaps = 89/365 (24%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 1559 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 1618
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 1619 TMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPV 1678
T P + + +S I + E+ V +
Sbjct: 140 TPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHEWVTDFK--GKT 181
Query: 1679 IIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRG 1738
+ FV K + +A L K G L + + D +V TD++ G
Sbjct: 182 VWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMG 237
Query: 1739 IDIK---------DVSMVINYD----------MAKSIEDYTHRIGRTGRAGKEGLAVSFC 1779
+ K + VI D M + R GR GR K
Sbjct: 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297
Query: 1780 TKDDS 1784
+
Sbjct: 298 MGEPL 302
Score = 80.4 bits (197), Expect = 1e-16
Identities = 32/226 (14%), Positives = 59/226 (26%), Gaps = 48/226 (21%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ R I G+GKT +L ++ E +G +I+APTR +A ++EE
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIV-----------REAIKRGLRTLILAPTRVVAAEMEE 56
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 142
+ G EIV + + + I
Sbjct: 57 ALRGLPIRYQTPAI------------RAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLI 104
Query: 143 VLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTA 202
++DEA + TA
Sbjct: 105 IMDEAHFTDPASIAARGYISTRVEM-------------------------GEAAGIFMTA 139
Query: 203 TMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFT 248
T P ++ + + + + + + +TV F
Sbjct: 140 TPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFV 185
Score = 50.7 bits (120), Expect = 8e-07
Identities = 26/197 (13%), Positives = 43/197 (21%), Gaps = 36/197 (18%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERIEQIVYILSEQDKRKKLM 298
+ TAT P + + +S I + E+
Sbjct: 129 MGEAAGIFMTATPPGSRDPFPQSNAP----------------IMDEEREIPERSWNSGHE 172
Query: 299 EVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRELALNSLKGGSKD 358
V + + FV K + +A L K G L +
Sbjct: 173 WVTDFK--GKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYI------------ 218
Query: 359 ILMAGDRRSRSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSRERE 418
R+ ++ R D R +R+
Sbjct: 219 -----KTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVT 273
Query: 419 REKRHHRRDRSKERDGK 435
RR R R+ K
Sbjct: 274 HSSAAQRRGRVG-RNPK 289
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 138 bits (348), Expect = 2e-37
Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 729 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 788
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS--------- 54
Query: 789 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREE 847
+P + R++ A+++ PTRELA Q+ + G + + GG + +
Sbjct: 55 GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 848 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 907
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 908 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 963
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
Score = 138 bits (348), Expect = 2e-37
Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 1404 NWKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLV 1463
+++ L E+L I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS--------- 54
Query: 1464 WIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREE 1522
+P + R++ A+++ PTRELA Q+ + G + + GG + +
Sbjct: 55 GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRD 114
Query: 1523 QGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYM 1582
RL +VIATPGR++D+++ ++ IVLDEAD+++ F ++ I+ +
Sbjct: 115 DIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTL 174
Query: 1583 PVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATV 1638
P K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 P-------------------------KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
Score = 105 bits (262), Expect = 6e-26
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I ++G+ +P+PIQ ++IPI L RDI+ A+ G+GK+ +P + R++
Sbjct: 18 IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKS---------GAYLIPLLERLDLK 68
Query: 62 DQGPYAIIMAPTRELAQQIEEE-TNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
A+++ PTRELA Q+ + G + + GG + + RL +VIA
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIA 128
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TPGR++D+++ ++ IVLDEAD+++ F ++ I+ +P
Sbjct: 129 TPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------- 175
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP 206
K RQ ++++AT P
Sbjct: 176 ------------KNRQILLYSATFPL 189
Score = 52.7 bits (125), Expect = 7e-08
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 239 KKYRQTVMFTATMPPAVERLARSYLRRPATV 269
K RQ ++++AT P +V++ S+L +P +
Sbjct: 175 PKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 133 bits (335), Expect = 8e-36
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 63 ---------VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 113
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 114 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP- 172
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 966
Q+++F+AT P V+ +L +P + +
Sbjct: 173 ------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
Score = 133 bits (335), Expect = 8e-36
Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+++ L E+L I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
++ A+IM PTRELA Q + G GI ++ GG + +
Sbjct: 63 ---------VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI 113
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
RL I++ TPGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 114 LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP- 172
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIG 1641
Q+++F+AT P V+ +L +P + +
Sbjct: 173 ------------------------PTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM 205
Score = 100 bits (249), Expect = 3e-24
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 81/271 (29%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I + G+ +P+PIQ +AIP+ + RDI+ A+ G+GKT AF++P L ++
Sbjct: 16 IFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK---------VKPK 66
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A+IM PTRELA Q + G GI ++ GG + + RL I++ T
Sbjct: 67 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGT 126
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR++D+ + L+ C+ ++DEAD+M+ F+ +++IL ++P
Sbjct: 127 PGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP-------------- 172
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
Q+++
Sbjct: 173 -----------PTHQSLL------------------------------------------ 179
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYIG 272
F+AT P V+ +L +P + +
Sbjct: 180 -----FSATFPLTVKEFMVKHLHKPYEINLM 205
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C
virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 129 bits (325), Expect = 3e-33
Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 1026 NACTLHGGKGQEQREL----------ALNSLKGGSKDILVATDVAGRGIDIKD---VSMV 1072
NA + G AL + G D ++ + +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTI 121
Query: 1073 INYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDDSHL 1111
+ + T R GRTGR GK G+ V+ +
Sbjct: 122 ETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMF 161
Score = 129 bits (325), Expect = 3e-33
Identities = 35/161 (21%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 1701 NACTLHGGKGQEQREL----------ALNSLKGGSKDILVATDVAGRGIDIKD---VSMV 1747
NA + G AL + G D ++ + +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTI 121
Query: 1748 INYDMAKSIEDYTHRIGRTGRAGKEGLA--VSFCTKDDSHL 1786
+ + T R GRTGR GK G+ V+ +
Sbjct: 122 ETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMF 161
Score = 64.6 bits (157), Expect = 2e-11
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 272 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 331
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 332 NACTLHGGKGQEQREL----------ALNSLKGGSKDILMAGDRRSR 368
NA + G AL + G D ++ +
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVT 108
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 123 bits (308), Expect = 4e-32
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
I+ + A ++ + + T I ++GG +++
Sbjct: 63 IKP-----ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 850 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 909
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP- 176
Query: 910 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 965
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 177 ------------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
Score = 123 bits (308), Expect = 4e-32
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ I+E I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
I+ + A ++ + + T I ++GG +++
Sbjct: 63 IKP-----ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL 117
Query: 1525 FRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPV 1584
+L + IVI TPGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 118 EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP- 176
Query: 1585 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLRRPATVYI 1640
K Q ++F+AT+P ++ + Y+ P V++
Sbjct: 177 ------------------------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
Score = 89.7 bits (221), Expect = 1e-20
Identities = 58/270 (21%), Positives = 104/270 (38%), Gaps = 77/270 (28%)
Query: 2 IEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDA 61
I+ + + +PT IQ + IP L+ ++G ++TG+GKT A+LLP++ I+ +
Sbjct: 16 IKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-----ERAEV 70
Query: 62 DQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIAT 121
A ++ + + T I ++GG +++ +L + IVI T
Sbjct: 71 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGT 130
Query: 122 PGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDE 181
PGR+ D + + L ++ +V+DEAD M+DMGF DV +I MP
Sbjct: 131 PGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-------------- 176
Query: 182 NKLLANYNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKY 241
K Q ++
Sbjct: 177 -----------KDLQMLV------------------------------------------ 183
Query: 242 RQTVMFTATMPPAVERLARSYLRRPATVYI 271
F+AT+P ++ + Y+ P V++
Sbjct: 184 -----FSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 123 bits (309), Expect = 6e-32
Identities = 43/245 (17%), Positives = 66/245 (26%), Gaps = 59/245 (24%)
Query: 730 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 789
+ E L E +E K EP IQ+ L+ A TG GKT L L
Sbjct: 24 FPEDFLLKEFVEFFRK-CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 790 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 849
+ ++ PT L Q E K+ G+ T ++G
Sbjct: 83 ALKGKR------------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPK 130
Query: 850 FRL------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID---------- 893
+IVI T L L +I +D+ D ++
Sbjct: 131 REKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLH 186
Query: 894 -MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 952
+GF D++ ++ TAT +
Sbjct: 187 LLGFHYDLKTKSWVGE-------------------------ARGCLMVSTATAKKGKKAE 221
Query: 953 ARSYL 957
L
Sbjct: 222 LFRQL 226
Score = 123 bits (309), Expect = 6e-32
Identities = 43/245 (17%), Positives = 66/245 (26%), Gaps = 59/245 (24%)
Query: 1405 WKEASLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVW 1464
+ E L E +E K EP IQ+ L+ A TG GKT L L
Sbjct: 24 FPEDFLLKEFVEFFRK-CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 1465 IQSLPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQG 1524
+ ++ PT L Q E K+ G+ T ++G
Sbjct: 83 ALKGKR------------CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPK 130
Query: 1525 FRL------RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMID---------- 1568
+IVI T L L +I +D+ D ++
Sbjct: 131 REKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLH 186
Query: 1569 -MGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERL 1627
+GF D++ ++ TAT +
Sbjct: 187 LLGFHYDLKTKSWVGE-------------------------ARGCLMVSTATAKKGKKAE 221
Query: 1628 ARSYL 1632
L
Sbjct: 222 LFRQL 226
Score = 113 bits (284), Expect = 1e-28
Identities = 37/218 (16%), Positives = 57/218 (26%), Gaps = 58/218 (26%)
Query: 6 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 65
EP IQ+ L+ A TG GKT L L +
Sbjct: 40 CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKR----------- 88
Query: 66 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL------RLGCEIVI 119
++ PT L Q E K+ G+ T ++G +IVI
Sbjct: 89 -CYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVI 147
Query: 120 ATPGRLIDVLENRYLVLNQCTYIVLDEADRMID-----------MGFEPDVQKILEYMPV 168
T L L +I +D+ D ++ +GF D++
Sbjct: 148 TTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE- 202
Query: 169 TNLKPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPP 206
++ TAT
Sbjct: 203 ------------------------ARGCLMVSTATAKK 216
Score = 33.7 bits (76), Expect = 0.14
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 231 LLANYNSKKKYRQTVMFTATMPPAVERLARSYL 263
L + ++ TAT + L
Sbjct: 194 LKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 106 bits (266), Expect = 1e-26
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 734 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 793
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 794 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 853
+G ++ + P R LA + E K+ + SR+E
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD-- 114
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
C+I++ T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 115 --CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-- 170
Query: 914 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 954
K + + +AT P +A
Sbjct: 171 --------------------KALRVIGLSATAPNV-TEIAE 190
Score = 106 bits (266), Expect = 1e-26
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 39/221 (17%)
Query: 1409 SLPTEILEIIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSL 1468
S+ + + I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-- 66
Query: 1469 PKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLR 1528
+G ++ + P R LA + E K+ + SR+E
Sbjct: 67 ----------KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD-- 114
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
C+I++ T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 115 --CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-- 170
Query: 1589 PDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 1629
K + + +AT P +A
Sbjct: 171 --------------------KALRVIGLSATAPNV-TEIAE 190
Score = 97.7 bits (242), Expect = 2e-23
Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 38/210 (18%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
I+++ G E P Q +A+ ++++ T +GKTL + ++
Sbjct: 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------- 66
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
+G ++ + P R LA + E K+ + SR+E C+I++
Sbjct: 67 --KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGD----CDIIVT 120
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
T + ++ NR + + +V+DE + ++ ++ M N
Sbjct: 121 TSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN---------- 170
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPPAKIL 210
K + + +AT P +
Sbjct: 171 ------------KALRVIGLSATAPNVTEI 188
Score = 32.2 bits (72), Expect = 0.34
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 221 DTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVERLAR 260
+ L+ K + + +AT P +A
Sbjct: 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAE 190
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 102 bits (254), Expect = 7e-25
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 39/230 (16%)
Query: 734 SLPTEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 792
+L + +++++ GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 793 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 852
++++P L + ++ G E
Sbjct: 66 -------------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 853 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 912
++ P RL+ +L + +DEA + G +
Sbjct: 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR------------- 159
Query: 913 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 960
E L + + TAT + + L P
Sbjct: 160 --------PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
Score = 102 bits (254), Expect = 7e-25
Identities = 36/230 (15%), Positives = 69/230 (30%), Gaps = 39/230 (16%)
Query: 1409 SLPTEILEIIEKI-GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQS 1467
+L + +++++ GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN-- 65
Query: 1468 LPKIARMEDADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRL 1527
++++P L + ++ G E
Sbjct: 66 -------------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR 112
Query: 1528 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 1587
++ P RL+ +L + +DEA + G +
Sbjct: 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR------------- 159
Query: 1588 KPDTEDAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 1635
E L + + TAT + + L P
Sbjct: 160 --------PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
Score = 92.8 bits (229), Expect = 1e-21
Identities = 34/205 (16%), Positives = 58/205 (28%), Gaps = 36/205 (17%)
Query: 3 EKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDAD 62
E GY + P Q + I L RD + V TG GK+L + +P L+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------------- 65
Query: 63 QGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATP 122
++++P L + ++ G E ++ P
Sbjct: 66 --GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123
Query: 123 GRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDEN 182
RL+ +L + +DEA + G + E
Sbjct: 124 ERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR---------------------PEY 162
Query: 183 KLLANYNSKKKYRQTVMFTATMPPA 207
L + + TAT
Sbjct: 163 AALGQLRQRFPTLPFMALTATADDT 187
Score = 36.2 bits (82), Expect = 0.023
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 224 DAEDENKLLANYNSKKKYRQTVMFTATMPPAVER--LARSYLRRP 266
D E L + + TAT + + L P
Sbjct: 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 96.1 bits (238), Expect = 3e-23
Identities = 47/158 (29%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1650 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1708
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 1709 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1768
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 1769 AGKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
G++G+A++F T +D +L++ S+ + P ++
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEK-FYSTQIEELPSDI 157
Score = 95.4 bits (236), Expect = 4e-23
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 975 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 1033
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 1034 KGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGR 1093
Q++R+ + + GS IL++TD+ RGID++ VS+VINYD+ + E+Y HRIGR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 1094 AGKEGLAVSFCTKDDSHLFYDLKQMM 1119
G++G+A++F T +D +L++
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFY 146
Score = 48.4 bits (114), Expect = 1e-06
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 281 IEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGG 339
I+Q + E+ K + L ++ + +IF N ++ + L L + ++
Sbjct: 1 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 60
Query: 340 KGQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRK 375
Q++R+ + + GS IL++ D +R +
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQV 96
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 92.7 bits (229), Expect = 4e-22
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
IEQ ++E ++ + L +L + ++F K+ LA L +G+ A +HG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGRTG
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTG 120
Query: 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
RAGK+G A+S + + +++ M
Sbjct: 121 RAGKKGKAISIINRREYKKLRYIERAM 147
Score = 92.7 bits (229), Expect = 4e-22
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
IEQ ++E ++ + L +L + ++F K+ LA L +G+ A +HG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
Q QRE + K IL+ATDV RGID+ D++ VINY + ++ E Y HRIGRTG
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTG 120
Query: 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
RAGK+G A+S + + +++ M
Sbjct: 121 RAGKKGKAISIINRREYKKLRYIERAM 147
Score = 36.9 bits (84), Expect = 0.008
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 338
IEQ ++E ++ + L +L + ++F K+ LA L +G+ A +HG
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK-EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60
Query: 339 GKGQEQRELALNSLKGGSKDILMAGD 364
Q QRE + K IL+A D
Sbjct: 61 DLSQSQREKVIRLFKQKKIRILIATD 86
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 89.6 bits (221), Expect = 6e-21
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 973 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
E I+Q + E+ K L ++ + +IF N K+ D L + + + + ++H
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 65
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1091
G Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+
Sbjct: 66 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125
Query: 1092 GRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
GR G++G+A++F DD + D++Q
Sbjct: 126 GRYGRKGVAINFVKNDDIRILRDIEQYY 153
Score = 89.6 bits (221), Expect = 6e-21
Identities = 48/148 (32%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Query: 1648 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
E I+Q + E+ K L ++ + +IF N K+ D L + + + + ++H
Sbjct: 6 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 65
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRT 1766
G Q++RE + + G+ +L++TDV RG+D+ VS++INYD+ + E Y HRIGR+
Sbjct: 66 GDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 125
Query: 1767 GRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
GR G++G+A++F DD + D++Q
Sbjct: 126 GRYGRKGVAINFVKNDDIRILRDIEQYY 153
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 88.2 bits (218), Expect = 7e-21
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 966 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1025
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS---MVINYDMAKSIE 1082
NA + G ++VATD G S + +
Sbjct: 61 NAVAYYRGLDVSVI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAV 113
Query: 1083 DYTHRIGRTGRAGKEGLAVSFCTKDD 1108
T R GRTGR GK G F +
Sbjct: 114 SRTQRRGRTGR-GKPG-IYRFVAPGE 137
Score = 88.2 bits (218), Expect = 7e-21
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 12/146 (8%)
Query: 1641 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 1700
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVS---MVINYDMAKSIE 1757
NA + G ++VATD G S + +
Sbjct: 61 NAVAYYRGLDVSVI-------PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAV 113
Query: 1758 DYTHRIGRTGRAGKEGLAVSFCTKDD 1783
T R GRTGR GK G F +
Sbjct: 114 SRTQRRGRTGR-GKPG-IYRFVAPGE 137
Score = 47.8 bits (113), Expect = 1e-06
Identities = 20/74 (27%), Positives = 27/74 (36%)
Query: 272 GSVGKPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGY 331
GSV P IE++ + + L +IF + KK D LA L LG
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 60
Query: 332 NACTLHGGKGQEQR 345
NA + G
Sbjct: 61 NAVAYYRGLDVSVI 74
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 88.7 bits (219), Expect = 8e-20
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 16/151 (10%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 1035 GQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAKSIEDYTHRIG 1089
++ G D L+ T RG+D+ + + + + I
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC----PSFRVTIE 109
Query: 1090 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1120
+ + + + L +
Sbjct: 110 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVE 140
Score = 88.7 bits (219), Expect = 8e-20
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 16/151 (10%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 1710 GQEQRELALNSLKGGSKDILVAT----DVAGRGIDIKD-VSMVINYDMAKSIEDYTHRIG 1764
++ G D L+ T RG+D+ + + + + I
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGC----PSFRVTIE 109
Query: 1765 RTGRAGKEGLAVSFCTKDDSHLFYDLKQMMI 1795
+ + + + L +
Sbjct: 110 DIDSLSPQMVKLLAYLYRNVDEIERLLPAVE 140
Score = 64.8 bits (157), Expect = 1e-11
Identities = 31/262 (11%), Positives = 69/262 (26%), Gaps = 21/262 (8%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
+ + + + L +L + + II+ + A+ + + L+ G
Sbjct: 1 VRNVEDVAVNDESISTLSSILEK-LGTGGIIYARTGEEAEEIYESLKNK------FRIGI 53
Query: 341 GQEQRELALNSLKGGSKDILMAGDRRSRSRSPPRKRRSRSR---ERDYDRVRERDTDRSR 397
++ G D L+ + R R R D
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDS 113
Query: 398 DDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKS 457
+ L R+ R K R + ++ +
Sbjct: 114 LSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIF 173
Query: 458 RDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAE 517
D Y Q G K LE+ + + K E ++ +
Sbjct: 174 PDLRTY---IQGSGRTSRLFAGGLTKGASFLLED---DSELLSAFIERAKLYDIEFKSID 227
Query: 518 ALRKRQAEVEEMRKKMEEERKK 539
+ + E++ ++++E R +
Sbjct: 228 EV-----DFEKLSRELDESRDR 244
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 89.2 bits (220), Expect = 1e-19
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLGY 1025
K + Q I + K KL E++ +++ +I+F N ++ A + L K G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 1026 NACTLHGGKGQEQR--------ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1077
A G +E +L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
S R GRTGR G + K
Sbjct: 247 VPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 276
Score = 89.2 bits (220), Expect = 1e-19
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLGY 1700
K + Q I + K KL E++ +++ +I+F N ++ A + L K G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 1701 NACTLHGGKGQEQR--------ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDM 1752
A G +E +L L+ G ++LVAT V G+D+ +V +V+ Y+
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEP 246
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
S R GRTGR G + K
Sbjct: 247 VPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 276
Score = 32.6 bits (73), Expect = 0.40
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 276 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKP----VIIFVNQKKGADVLAKGLEKLGY 331
K + Q I + K KL E++ +++ +I+F N ++ A + L K G
Sbjct: 127 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 186
Query: 332 NACTLHGGKGQEQR--------ELALNSLKGGSKDILMAGDRRSR 368
A G +E +L L+ G ++L+A
Sbjct: 187 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEE 231
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 79.7 bits (195), Expect = 1e-17
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 973 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1031
I Q + +DK + L + IIF ++ A L + + G+ L
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLS 63
Query: 1032 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS------IEDYT 1085
G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E Y
Sbjct: 64 GELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYL 123
Query: 1086 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
HRIGRTGR GK+GLA + D+ ++
Sbjct: 124 HRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 157
Score = 79.7 bits (195), Expect = 1e-17
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 1648 ERIEQIVYIL-SEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 1706
I Q + +DK + L + IIF ++ A L + + G+ L
Sbjct: 4 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLS 63
Query: 1707 GGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKS------IEDYT 1760
G EQR + + G + +L+ T+V RGID+K V++V+N+D+ E Y
Sbjct: 64 GELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYL 123
Query: 1761 HRIGRTGRAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
HRIGRTGR GK+GLA + D+ ++
Sbjct: 124 HRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 157
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 200
Score = 80.9 bits (198), Expect = 2e-17
Identities = 36/154 (23%), Positives = 59/154 (38%)
Query: 1655 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1714
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1715 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1774
+ I+VAT G GI+ +V V+++D+ ++IE Y GR GR G
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1775 AVSFCTKDDSHLFYDLKQMMISSPVSTCPPELLN 1808
A+ F D + + LN
Sbjct: 130 AMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLN 163
Score = 78.5 bits (192), Expect = 1e-16
Identities = 34/141 (24%), Positives = 56/141 (39%)
Query: 980 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 1039
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 1040 ELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKEGL 1099
+ I+VAT G GI+ +V V+++D+ ++IE Y GR GR G
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 129
Query: 1100 AVSFCTKDDSHLFYDLKQMMI 1120
A+ F D +
Sbjct: 130 AMLFYDPADMAWLRRCLEEKP 150
Score = 44.3 bits (103), Expect = 4e-05
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 286 YILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQR 345
++ + +LM + K II+ N + + A L+ G +A H G R
Sbjct: 10 MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 69
Query: 346 ELALNSLKGGSKDILMAGDRRSRSRSPPRKRR 377
+ I++A + P R
Sbjct: 70 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 101
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 74.3 bits (181), Expect = 1e-15
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 973 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1032
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64
Query: 1033 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1092
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+G
Sbjct: 65 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 124
Query: 1093 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1119
R G GLA++ +D Y ++Q +
Sbjct: 125 RFGHLGLAINLINWNDRFNLYKIEQEL 151
Score = 74.3 bits (181), Expect = 1e-15
Identities = 49/147 (33%), Positives = 77/147 (52%)
Query: 1648 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHG 1707
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64
Query: 1708 GKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTG 1767
Q++R + + G LV +D+ RGIDI+ V++VIN+D K+ E Y HRIGR+G
Sbjct: 65 RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 124
Query: 1768 RAGKEGLAVSFCTKDDSHLFYDLKQMM 1794
R G GLA++ +D Y ++Q +
Sbjct: 125 RFGHLGLAINLINWNDRFNLYKIEQEL 151
Score = 33.1 bits (74), Expect = 0.15
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 279 ERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLH 337
+ I Q + E+ K L + ++ IIF N ++LAK + LGY+ H
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 63
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 200
Score = 74.9 bits (183), Expect = 1e-15
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 976 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1035
E + ++K +KL E+L R K +IIF + ++K + +
Sbjct: 69 EARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTS 123
Query: 1036 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1095
+E+RE L + G +V++ V GID+ D ++ + + S +Y R+GR R
Sbjct: 124 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
Query: 1096 KEGLAVSFCT 1105
K
Sbjct: 184 KGKKEAVLYE 193
Score = 74.9 bits (183), Expect = 1e-15
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 1651 EQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGKG 1710
E + ++K +KL E+L R K +IIF + ++K + +
Sbjct: 69 EARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTS 123
Query: 1711 QEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAG 1770
+E+RE L + G +V++ V GID+ D ++ + + S +Y R+GR R
Sbjct: 124 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
Query: 1771 KEGLAVSFCT 1780
K
Sbjct: 184 KGKKEAVLYE 193
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 66.6 bits (161), Expect = 5e-13
Identities = 50/157 (31%), Positives = 84/157 (53%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 61
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1769
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 62 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 121
Query: 1770 GKEGLAVSFCTKDDSHLFYDLKQMMISSPVSTCPPEL 1806
G +GLA++F + ++ + Q +S P E+
Sbjct: 122 GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 158
Score = 65.1 bits (157), Expect = 2e-12
Identities = 48/146 (32%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
++Q L + +K +KL ++L+ V+IFV + LA+ L + + A +H G
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 61
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 1094
QE+R K + ILVAT++ GRG+DI+ V++ NYDM + + Y HR+ R GR
Sbjct: 62 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 121
Query: 1095 GKEGLAVSFCT-KDDSHLFYDLKQMM 1119
G +GLA++F + ++D+ + D++
Sbjct: 122 GTKGLAITFVSDENDAKILNDVQDRF 147
Score = 38.5 bits (88), Expect = 0.003
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKK 317
++Q L + +K +KL ++L+ V+IFV +
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 38
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 66.3 bits (160), Expect = 1e-12
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 742 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 801
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 802 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 861
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 862 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 921
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 922 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 958
K + TA+ E++
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINN 179
Score = 66.3 bits (160), Expect = 1e-12
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 38/217 (17%)
Query: 1417 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 1476
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 1477 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 1536
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 1537 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 1596
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 1597 ENKLLANYNSKKKYRQTVMFTATMPPAVERLARSYLR 1633
K + TA+ E++
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINN 179
Score = 65.6 bits (158), Expect = 3e-12
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 43/232 (18%)
Query: 1 IIEKIGYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMED 60
++ + +P Q + + + V TG GKTL ++ +
Sbjct: 1 MVLRRDLIQPRIYQEVIYAK-CKETNCLIVLPTGLGKTLIAMMIAEYRL----------- 48
Query: 61 ADQGPYAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIA 120
G +++APT+ L Q E + + V + G S EE+ IV
Sbjct: 49 TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVA- 107
Query: 121 TPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAED 180
TP + + L + L + IV DEA R + + + +
Sbjct: 108 TPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA------------- 154
Query: 181 ENKLLANYNSKKKYRQTVMFTATMPP-----AKILEYMPVTNLKPDTEDAED 227
K + TA+ +++ + + +++ +E++ D
Sbjct: 155 ------------KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPD 194
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 64.3 bits (156), Expect = 4e-12
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
KPTE QI+ ++ +R E ++ V + A+ L L + G A
Sbjct: 11 KPTE--NQILDLMEGIRERAARGE--------RTLVTVLTVRMAEELTSFLVEHGIRARY 60
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1087
LH +R+ + L+ G D LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1088 IGRTGRAGKEGLAVSFCTKDD 1108
I GRA + + D
Sbjct: 121 IQTIGRAARNARGEVWLYADR 141
Score = 64.3 bits (156), Expect = 4e-12
Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
KPTE QI+ ++ +R E ++ V + A+ L L + G A
Sbjct: 11 KPTE--NQILDLMEGIRERAARGE--------RTLVTVLTVRMAEELTSFLVEHGIRARY 60
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1762
LH +R+ + L+ G D LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1763 IGRTGRAGKEGLAVSFCTKDD 1783
I GRA + + D
Sbjct: 121 IQTIGRAARNARGEVWLYADR 141
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 62.1 bits (150), Expect = 3e-11
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 970 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1029
+PT+ QI ++ E +R + E ++ KK A+ L L++ G
Sbjct: 11 RPTK--GQIDDLIGEIRERVERNE--------RTLVTTLTKKMAEDLTDYLKEAGIKVAY 60
Query: 1030 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1087
LH +R + L+ G D+LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1088 IGRTGRAGKEGLAVSFCTKDDSHLFY 1113
I GRA + D
Sbjct: 121 IQTIGRAARNANGHVIMYADTITKSM 146
Score = 62.1 bits (150), Expect = 3e-11
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 1645 KPTERIEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACT 1704
+PT+ QI ++ E +R + E ++ KK A+ L L++ G
Sbjct: 11 RPTK--GQIDDLIGEIRERVERNE--------RTLVTTLTKKMAEDLTDYLKEAGIKVAY 60
Query: 1705 LHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHR-- 1762
LH +R + L+ G D+LV ++ G+DI +VS+V D K + R
Sbjct: 61 LHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 120
Query: 1763 IGRTGRAGKEGLAVSFCTKDDSHLFY 1788
I GRA + D
Sbjct: 121 IQTIGRAARNANGHVIMYADTITKSM 146
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 201
Score = 62.6 bits (151), Expect = 3e-11
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 984 EQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGL--------------------- 1020
+R K E++ V + V++F + ++GA+ A L
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 81
Query: 1021 ---------EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1071
E + A H G QR + ++ + G+ ++VAT G+++ +
Sbjct: 82 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 141
Query: 1072 VI-------NYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISS 1122
++ Y + +Y GR GR G G A+ K D + K+ +
Sbjct: 142 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV--KRYIFGE 199
Query: 1123 P 1123
P
Sbjct: 200 P 200
Score = 62.6 bits (151), Expect = 3e-11
Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 43/181 (23%)
Query: 1659 EQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGL--------------------- 1695
+R K E++ V + V++F + ++GA+ A L
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEEN 81
Query: 1696 ---------EKLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSM 1746
E + A H G QR + ++ + G+ ++VAT G+++ +
Sbjct: 82 EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRV 141
Query: 1747 VI-------NYDMAKSIEDYTHRIGRTGRAGK--EGLAVSFCTKDDSHLFYDLKQMMISS 1797
++ Y + +Y GR GR G G A+ K D + K+ +
Sbjct: 142 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV--KRYIFGE 199
Query: 1798 P 1798
P
Sbjct: 200 P 200
Score = 29.9 bits (66), Expect = 2.4
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 290 EQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGYN 332
+R K E++ V + V++F + ++GA+ A L +
Sbjct: 22 STSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAK 66
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus
[TaxId: 11089]}
Length = 299
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 975 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1034
IE + + + +L +P F+ + A+V+A L K G + L+
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADK--RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 70
Query: 1035 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1089
+ + K D ++ATD+A G ++ V V++ A
Sbjct: 71 FEREYPTI----KQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 1650 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 1709
IE + + + +L +P F+ + A+V+A L K G + L+
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADK--RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 70
Query: 1710 GQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSIEDYTHRIG 1764
+ + K D ++ATD+A G ++ V V++ A
Sbjct: 71 FEREYPTI----KQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRK 120
Score = 28.8 bits (64), Expect = 6.0
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 281 IEQIVYILSEQDKRKKLMEVLNRGVKKPVIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 340
IE + + + +L +P F+ + A+V+A L K G + L+
Sbjct: 13 IEDVQTDIPSEPWNTGHDWILADK--RPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKT 70
Query: 341 GQEQRELALN 350
+ +
Sbjct: 71 FEREYPTIKQ 80
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 39.6 bits (92), Expect = 0.002
Identities = 26/210 (12%), Positives = 57/210 (27%), Gaps = 10/210 (4%)
Query: 374 RKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERD 433
R R D+ + R E + ++ ++R
Sbjct: 79 RYRAYFDALAQLPGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRH 138
Query: 434 GKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELL 493
+R E + Q+ + + A+++ ++ L
Sbjct: 139 DLERIRIANDTTLSPEQ-------KAARLAALDAQLTPDERAQQAALHAQQDAVTKIADL 191
Query: 494 AKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKR 553
K A + T AA + Q + E + + + +R + R
Sbjct: 192 QKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDR 251
Query: 554 ENFDARLRRDREKKKEDPEEKELNKDKERE 583
+ AR+ + R++ P E +R
Sbjct: 252 D---ARIAQLRQQTFTAPGEAIRAASLDRG 278
Score = 35.0 bits (80), Expect = 0.071
Identities = 28/272 (10%), Positives = 65/272 (23%), Gaps = 47/272 (17%)
Query: 411 RDRSREREREKRHHRRDRSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMV 470
R + +++ R Y + G+ +
Sbjct: 53 DALVRREIAAQLDGSPAQAEALGVWRRYRAYFDALAQLPGDGAVLGDKLDPAAMQLALDQ 112
Query: 471 ISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMR 530
+ + + E+ + E + L+ E++AA + R
Sbjct: 113 RAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDER 172
Query: 531 KKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKER 590
+ ++ TK A + ++ R + + PE +++ EA + R
Sbjct: 173 AQQAALHAQQDAVTKIA--DLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTR 230
Query: 591 YLGLVKKKRRVRRLNDRKFVFDWDASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQK 650
Y ++ R I AQ
Sbjct: 231 YQAYAAERDR---------------------------------------------IAAQG 245
Query: 651 RDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKK 682
+ + R+ E +R + +
Sbjct: 246 LAPQDRDARIAQLRQQTFTAPGEAIRAASLDR 277
Score = 31.9 bits (72), Expect = 0.58
Identities = 14/136 (10%), Positives = 30/136 (22%), Gaps = 3/136 (2%)
Query: 389 RERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRERREE 448
+ + +L D ++ K + +
Sbjct: 147 NDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIA 206
Query: 449 EASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKF 508
+ G + +R + + E AA + + + A + F
Sbjct: 207 QTLGPEAAARAAQMQQDDEAW---QTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTF 263
Query: 509 LTKEERAAEALRKRQA 524
E A R A
Sbjct: 264 TAPGEAIRAASLDRGA 279
Score = 31.2 bits (70), Expect = 1.0
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 368 RSRSPPRKRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRD 427
++ P +R ++ + D + D+ R ++ + E ++D
Sbjct: 164 DAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQD 223
Query: 428 RSKERDGKDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKE 485
+ R + Y ER A G + RD + +Q + E + A+ +
Sbjct: 224 DEAWQT---RYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRG 278
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 39.3 bits (91), Expect = 0.003
Identities = 31/218 (14%), Positives = 78/218 (35%), Gaps = 4/218 (1%)
Query: 386 DRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYRRER 445
+ +D D + ++ ++ ++++ D
Sbjct: 75 RDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSP 134
Query: 446 REEE-ASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARS 504
EEE +G K + Q + E+ + E + L +K+ +
Sbjct: 135 LEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 194
Query: 505 KPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTK--EASFESKRENFDARLRR 562
+ LT++E+ E R + + K + E ++K ++ + E S++ + ++
Sbjct: 195 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 254
Query: 563 DREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRR 600
DR + ++ E K +E+E + +KE + + +
Sbjct: 255 DRVQLLKEQERTLALKLQEQE-QLLKEGFQKESRIMKN 291
Score = 39.0 bits (90), Expect = 0.004
Identities = 27/208 (12%), Positives = 72/208 (34%), Gaps = 10/208 (4%)
Query: 375 KRRSRSRERDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDG 434
+ + D+ + + + + E ++ + + + +
Sbjct: 102 AAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK 161
Query: 435 KDRREGYRRERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLA 494
K E R+ + EE + KS++ + E+E + + + E A
Sbjct: 162 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKA---ESAQA 218
Query: 495 KKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRE 554
K E + K E+ + R Q ++++ +KME +R + + + +E
Sbjct: 219 SAKMLHEMQRK-----NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Query: 555 NFDARLRRDREKKKEDPEEKELNKDKER 582
+L ++ +K+ + E+ + +
Sbjct: 274 Q--EQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 32.4 bits (73), Expect = 0.52
Identities = 29/203 (14%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Query: 495 KKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRE 554
+ E A+ + K ++ EA R + + ++ EE K ++K + +
Sbjct: 96 LFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQ 155
Query: 555 NFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVFDWD 614
++ E+ ++ + +E+ + + E++ + L + + + + V +
Sbjct: 156 KLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV-KAE 214
Query: 615 ASEDTSVDYNSIYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEK 674
+++ ++ + + ++ Q+ + ++ K E +E R + KEQE
Sbjct: 215 SAQASAKMLHEMQRKNEQMM---------EQKERSYQEHLKQLTEKMENDRVQLLKEQE- 264
Query: 675 VRLKKVKKREEKQKWDDRHWTEK 697
R +K +E++Q + E
Sbjct: 265 -RTLALKLQEQEQLLKEGFQKES 286
Score = 30.5 bits (68), Expect = 2.0
Identities = 20/151 (13%), Positives = 56/151 (37%), Gaps = 1/151 (0%)
Query: 383 RDYDRVRERDTDRSRDDRGRDRDRDRLERDRSREREREKRHHRRDRSKERDGKDRREGYR 442
R + + + + ++ + + + + + +E + + + E R
Sbjct: 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 210
Query: 443 RERREEEASGSKHKSRDKEGYEPTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEA 502
+ +AS ++ + EQ S +E K K E +LL +++
Sbjct: 211 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME-NDRVQLLKEQERTLAL 269
Query: 503 RSKPKFLTKEERAAEALRKRQAEVEEMRKKM 533
+ + + +E + R + E+++++ KM
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 38.3 bits (89), Expect = 0.003
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 970 KPTERIEQ--IVYILSEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGY 1025
+P R ++ ++Y + + K K + E + + PV++ + +++++K L+ G
Sbjct: 1 RPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 59
Query: 1026 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD--------M 1077
L+ + + ++ + + G+ + +AT++AGRG DIK V
Sbjct: 60 PHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 117
Query: 1078 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1108
+S GR+GR G G+ + + +D
Sbjct: 118 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
Score = 38.3 bits (89), Expect = 0.003
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 1645 KPTERIEQ--IVYILSEQDKRKKLMEVLNRGVKK--PVIIFVNQKKGADVLAKGLEKLGY 1700
+P R ++ ++Y + + K K + E + + PV++ + +++++K L+ G
Sbjct: 1 RPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI 59
Query: 1701 NACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYD--------M 1752
L+ + + ++ + + G+ + +AT++AGRG DIK V
Sbjct: 60 PHQVLNAKNHEREAQIIEEAGQKGA--VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER 117
Query: 1753 AKSIEDYTHRIGRTGRAGKEGLAVSFCTKDD 1783
+S GR+GR G G+ + + +D
Sbjct: 118 HESRRIDNQLRGRSGRQGDPGITQFYLSMED 148
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 82
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 83 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 142
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 143 VLDEA---DRMIDMGF 155
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 823
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 824 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 883
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 884 VLDEA---DRMIDMGF 896
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 31/136 (22%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAIIMAPTRELAQQIEE 1498
+ A TGSGK+ QG +++ P+
Sbjct: 7 SFQVAHLHAPTGSGKSTKVPAAYA---------------AQGYKVLVLNPSVAATLGFGA 51
Query: 1499 ETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYI 1558
+K +R T L + I
Sbjct: 52 YMSKAHG-------------VDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDII 98
Query: 1559 VLDEA---DRMIDMGF 1571
+ DE D +G
Sbjct: 99 ICDECHSTDATSILGI 114
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 36.8 bits (84), Expect = 0.012
Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 51/222 (22%)
Query: 688 KWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPD-PVRNWKEASLPTEILEIIEKI 746
K+D R +R Y I+ + + +PT + +I
Sbjct: 23 KFDSR-----------SGTYRALAFRYRDIIEYFESNGIEFVDNAADPIPTPYFD--AEI 69
Query: 747 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 806
Q +A+ L ++ V TGSGKT +A +
Sbjct: 70 ---SLRDYQEKALERWLVDKRGCIVLPTGSGKTH---------------VAMAAINELST 111
Query: 807 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 866
+I+ PT LA+Q +E F E G E+ T
Sbjct: 112 PTLIVVPTLALAEQWKERLGIF---------------GEEYVGEFSGRIKELKPLTVSTY 156
Query: 867 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 908
N + N+ ++ DE + + +I +
Sbjct: 157 DSAYVNAEKLGNRFMLLIFDEVHHLPAESY----VQIAQMSI 194
Score = 36.8 bits (84), Expect = 0.012
Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 51/222 (22%)
Query: 1363 KWDDRHWTEKSLDEMTERDWRIFREDYSITIKGGKVPD-PVRNWKEASLPTEILEIIEKI 1421
K+D R +R Y I+ + + +PT + +I
Sbjct: 23 KFDSR-----------SGTYRALAFRYRDIIEYFESNGIEFVDNAADPIPTPYFD--AEI 69
Query: 1422 GYAEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGP 1481
Q +A+ L ++ V TGSGKT +A +
Sbjct: 70 ---SLRDYQEKALERWLVDKRGCIVLPTGSGKTH---------------VAMAAINELST 111
Query: 1482 YAIIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRL 1541
+I+ PT LA+Q +E F E G E+ T
Sbjct: 112 PTLIVVPTLALAEQWKERLGIF---------------GEEYVGEFSGRIKELKPLTVSTY 156
Query: 1542 IDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 1583
N + N+ ++ DE + + +I +
Sbjct: 157 DSAYVNAEKLGNRFMLLIFDEVHHLPAESY----VQIAQMSI 194
Score = 31.0 bits (69), Expect = 0.95
Identities = 28/159 (17%), Positives = 47/159 (29%), Gaps = 34/159 (21%)
Query: 9 EPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYAI 68
Q +A+ L ++ V TGSGKT +A + +
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTH---------------VAMAAINELSTPTL 114
Query: 69 IMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLIDV 128
I+ PT LA+Q +E F E G E+ T
Sbjct: 115 IVVPTLALAEQWKERLGIF---------------GEEYVGEFSGRIKELKPLTVSTYDSA 159
Query: 129 LENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMP 167
N + N+ ++ DE + + +I +
Sbjct: 160 YVNAEKLGNRFMLLIFDEVHHLPAESY----VQIAQMSI 194
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 35.7 bits (81), Expect = 0.052
Identities = 28/264 (10%), Positives = 69/264 (26%), Gaps = 17/264 (6%)
Query: 8 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 67
A+ + +P + R ++ TG+GK++ +G
Sbjct: 34 AKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA------------YTGLLRGDRM 81
Query: 68 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 127
+I+ P ++ + + + P RT R +V +
Sbjct: 82 VIVDPNGDMLSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAE 141
Query: 128 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 187
+ +L + T L ++ +L+ E E+ L A
Sbjct: 142 EWASYGRLLLRETAKKLALIGT----PSMRELFHWTTIATFDDLRGFLEGTLAES-LFAG 196
Query: 188 YNSKKKYRQTVMFTATMPPAKILEYMPVTNLKPDTEDAEDENKLLANYNSKKKYRQTVMF 247
N K + F + + + + + L + +
Sbjct: 197 SNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLI 256
Query: 248 TATMPPAVERLARSYLRRPATVYI 271
+A + + +++
Sbjct: 257 SAWVDVVCTSILSLPEEPKRRLWL 280
Score = 31.4 bits (70), Expect = 0.98
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 17/196 (8%)
Query: 749 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 808
A+ + +P + R ++ TG+GK++ +G
Sbjct: 34 AKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA------------YTGLLRGDRM 81
Query: 809 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 868
+I+ P ++ + + + P RT R +V +
Sbjct: 82 VIVDPNGDMLSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAE 141
Query: 869 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 928
+ +L + T L ++ +L+ E E+ L A
Sbjct: 142 EWASYGRLLLRETAKKLALIGT----PSMRELFHWTTIATFDDLRGFLEGTLAES-LFAG 196
Query: 929 YNSKKKYRQTVMFTAT 944
N K + F +
Sbjct: 197 SNEASKALTSARFVLS 212
Score = 31.4 bits (70), Expect = 0.98
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 17/196 (8%)
Query: 1424 AEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLLPLLVWIQSLPKIARMEDADQGPYA 1483
A+ + +P + R ++ TG+GK++ +G
Sbjct: 34 AKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELA------------YTGLLRGDRM 81
Query: 1484 IIMAPTRELAQQIEEETNKFGTPLGIRTVLVVGGLSREEQGFRLRLGCEIVIATPGRLID 1543
+I+ P ++ + + + P RT R +V +
Sbjct: 82 VIVDPNGDMLSKFGRDKDIILNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEAE 141
Query: 1544 VLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEDAEDENKLLAN 1603
+ +L + T L ++ +L+ E E+ L A
Sbjct: 142 EWASYGRLLLRETAKKLALIGT----PSMRELFHWTTIATFDDLRGFLEGTLAES-LFAG 196
Query: 1604 YNSKKKYRQTVMFTAT 1619
N K + F +
Sbjct: 197 SNEASKALTSARFVLS 212
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 33.9 bits (76), Expect = 0.054
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 23 QNRDIIGVAETGSGKTLAFLLPLLVWIQ 50
+ + G+GKT FL +L
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECA 33
Score = 33.9 bits (76), Expect = 0.054
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 764 QNRDIIGVAETGSGKTLAFLLPLLVWIQ 791
+ + G+GKT FL +L
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECA 33
Score = 33.9 bits (76), Expect = 0.054
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 1439 QNRDIIGVAETGSGKTLAFLLPLLVWIQ 1466
+ + G+GKT FL +L
Sbjct: 6 KGMTTVLDFHPGAGKTRRFLPQILAECA 33
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 32.2 bits (73), Expect = 0.19
Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 483 KKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQE 542
++ SLEE+ K +A EE R + + + R+ + EV + + K +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQE--AELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
Query: 543 FTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGE 585
ES +EN +A L ++ ++ ++ K +E +
Sbjct: 96 EKLAQKMESNKENREAHLA-AMLERLQEKDKHAEEVRKNKELK 137
Score = 31.8 bits (72), Expect = 0.26
Identities = 12/73 (16%), Positives = 28/73 (38%)
Query: 474 EEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKM 533
+E + ++ E++ K E K ++ R+A + M +++
Sbjct: 61 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 120
Query: 534 EEERKKRQEFTKE 546
+E+ K +E K
Sbjct: 121 QEKDKHAEEVRKN 133
Score = 27.9 bits (62), Expect = 6.0
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 465 PTEQMVISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSK-PKFLTKEERAAEALRKRQ 523
P + +E + K AA++ E L K AE+ + EE ++
Sbjct: 37 PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Query: 524 AEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKK 568
++M E + + K +R+++E K+
Sbjct: 97 KLAQKMESNKENREAHLAAMLERLQEKDKHA---EEVRKNKELKE 138
Score = 27.5 bits (61), Expect = 7.6
Identities = 15/105 (14%), Positives = 29/105 (27%)
Query: 484 KEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEF 543
K P + + K+ AAE RK Q + E ++
Sbjct: 22 KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81
Query: 544 TKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIK 588
+ + +L + E KE+ E + + +
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
[TaxId: 5691]}
Length = 415
Score = 33.2 bits (75), Expect = 0.26
Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
KS++E + ++ R D+++ +K GK+ + R ++LPT + +++ +
Sbjct: 3 KSINECDLKGKKVLIRVDFNVPVKNGKITNDYR--IRSALPT-LKKVLTE 49
Score = 33.2 bits (75), Expect = 0.26
Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
KS++E + ++ R D+++ +K GK+ + R ++LPT + +++ +
Sbjct: 3 KSINECDLKGKKVLIRVDFNVPVKNGKITNDYR--IRSALPT-LKKVLTE 49
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 32.4 bits (72), Expect = 0.34
Identities = 27/185 (14%), Positives = 70/185 (37%), Gaps = 4/185 (2%)
Query: 510 TKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKE 569
T +++ +A K+ ++++ + ++ KK E ++ ++ N R + K
Sbjct: 1 TTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDL 60
Query: 570 DPEEKELNKDKEREGEAIKERYLGLVKKKRRVRRLNDRKFVF----DWDASEDTSVDYNS 625
+ K+ E+E +AIK+ K K V +++ D ++ ++
Sbjct: 61 IKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHSD 120
Query: 626 IYKERHQVQFFGRGNIAGIDIKAQKRDQSKFYGEMLEKRRTEAEKEQEKVRLKKVKKREE 685
K + + ++ + + +E+ + ++ +K K ++E
Sbjct: 121 YAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKE 180
Query: 686 KQKWD 690
KQ D
Sbjct: 181 KQDVD 185
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 32.3 bits (73), Expect = 0.56
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
K++ ++ R R+F R D+++ ++ G + D R A+LPT I +IE
Sbjct: 4 KTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTR--IRAALPT-IRYLIEH 50
Score = 32.3 bits (73), Expect = 0.56
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
K++ ++ R R+F R D+++ ++ G + D R A+LPT I +IE
Sbjct: 4 KTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTR--IRAALPT-IRYLIEH 50
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
[TaxId: 274]}
Length = 390
Score = 32.4 bits (73), Expect = 0.57
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
++L ++ + R+ R DY++ ++ GKV D R SLPT + ++
Sbjct: 2 RTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETR--ILESLPT-LRHLLAG 48
Score = 32.4 bits (73), Expect = 0.57
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
++L ++ + R+ R DY++ ++ GKV D R SLPT + ++
Sbjct: 2 RTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETR--ILESLPT-LRHLLAG 48
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 374
Score = 31.8 bits (71), Expect = 0.90
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 471 ISDEEEDKGAAAKKEPLSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMR 530
+ + ++ A+ + P L +++ + +A+ E ++ T + KR+ E+E +
Sbjct: 301 LYELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVN 360
Query: 531 K 531
Sbjct: 361 I 361
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 30.9 bits (69), Expect = 1.5
Identities = 9/50 (18%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
+LD++ + R+ R D+++ + ++ + R +A++P+ I ++
Sbjct: 3 LTLDKLNVKGKRVVMRVDFNVPMAAAQITNNAR--IKAAVPS-IKFCLDD 49
Score = 30.9 bits (69), Expect = 1.5
Identities = 9/50 (18%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
+LD++ + R+ R D+++ + ++ + R +A++P+ I ++
Sbjct: 3 LTLDKLNVKGKRVVMRVDFNVPMAAAQITNNAR--IKAAVPS-IKFCLDD 49
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 30.4 bits (68), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
S+ ++ +D R+F R D+++ + G K+ R A+LPT I ++E
Sbjct: 6 LSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQR--IVAALPT-IKYVLEH 52
Score = 30.4 bits (68), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
S+ ++ +D R+F R D+++ + G K+ R A+LPT I ++E
Sbjct: 6 LSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQR--IVAALPT-IKYVLEH 52
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 29.7 bits (65), Expect = 2.3
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 113 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 172
L + PGRL Y+ + +ID G + ++ E +
Sbjct: 6 LVTGGNVFVPGRLNAHFST-------VVYLEHKDRRIIIDPGNLSSMDELEEKFSELGIS 58
Query: 173 PDTEDA 178
PD
Sbjct: 59 PDDITD 64
Score = 29.7 bits (65), Expect = 2.3
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 854 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 913
L + PGRL Y+ + +ID G + ++ E +
Sbjct: 6 LVTGGNVFVPGRLNAHFST-------VVYLEHKDRRIIIDPGNLSSMDELEEKFSELGIS 58
Query: 914 PDTEDA 919
PD
Sbjct: 59 PDDITD 64
Score = 29.7 bits (65), Expect = 2.3
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 1529 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 1588
L + PGRL Y+ + +ID G + ++ E +
Sbjct: 6 LVTGGNVFVPGRLNAHFST-------VVYLEHKDRRIIIDPGNLSSMDELEEKFSELGIS 58
Query: 1589 PDTEDA 1594
PD
Sbjct: 59 PDDITD 64
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 29.7 bits (66), Expect = 3.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 697 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 745
++ ++ + R+ R D+++ +K G V D R A+LPT I +E+
Sbjct: 3 MTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTR--IRAALPT-IKYALEQ 49
Score = 29.7 bits (66), Expect = 3.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 1372 KSLDEMTERDWRIF-REDYSITIKGGKVPDPVRNWKEASLPTEILEIIEK 1420
++ ++ + R+ R D+++ +K G V D R A+LPT I +E+
Sbjct: 3 MTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTR--IRAALPT-IKYALEQ 49
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 28.8 bits (64), Expect = 5.9
Identities = 9/87 (10%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 525 EVEEMRKKMEEERKKRQEFTKEASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREG 584
+ KK + E++ K + + + ++ + K + + +
Sbjct: 115 YLSAALKKYQTEQRS-----KGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAIS 169
Query: 585 EAIKERYLGLVKKKRRVRRLNDRKFVF 611
E + + R+F F
Sbjct: 170 NKQGELENYVSDGYKTALTEERRRFCF 196
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 7.1
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1022 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1081
++GY ++ E L N++K D L + + G+ + ++ V + +MA++
Sbjct: 84 QIGYLFISVLVNSNSELIRLINNAIK---ND-LASRNPTFMGLALHCIANVGSREMAEAF 139
Query: 1082 EDYTHRI 1088
+I
Sbjct: 140 AGEIPKI 146
Score = 29.0 bits (64), Expect = 7.1
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1697 KLGYNACTLHGGKGQEQRELALNSLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKSI 1756
++GY ++ E L N++K D L + + G+ + ++ V + +MA++
Sbjct: 84 QIGYLFISVLVNSNSELIRLINNAIK---ND-LASRNPTFMGLALHCIANVGSREMAEAF 139
Query: 1757 EDYTHRI 1763
+I
Sbjct: 140 AGEIPKI 146
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 28.6 bits (63), Expect = 7.2
Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 487 LSLEELLAKKKAEEEARSKPKFLTKEERAAEALRKRQAEVEEMRKKMEEERKKRQEFTKE 546
+ E +A + + AR + + + RK Q +E K++E +++ + KE
Sbjct: 88 EVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 147
Query: 547 ASFESKRENFDARLRRDREKKKEDPEEKELNKDKEREGEAIKERYLGLVKKKRRVRR 603
A + ++ F+ K + + ++ + + + E K Y +++K +
Sbjct: 148 A--DRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQH 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.380
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,854,978
Number of extensions: 350684
Number of successful extensions: 1635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1467
Number of HSP's successfully gapped: 212
Length of query: 1832
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1734
Effective length of database: 1,062,056
Effective search space: 1841605104
Effective search space used: 1841605104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)