Query psy6410
Match_columns 169
No_of_seqs 154 out of 369
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:19:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2291|consensus 100.0 1.6E-50 3.5E-55 360.7 13.0 163 2-168 121-302 (602)
2 PF04597 Ribophorin_I: Ribopho 100.0 1.3E-48 2.8E-53 347.6 16.4 164 2-169 91-277 (432)
3 KOG2291|consensus 99.5 5.6E-15 1.2E-19 133.3 6.4 69 2-73 188-256 (602)
4 PF04597 Ribophorin_I: Ribopho 99.5 1.7E-14 3.6E-19 129.0 6.7 76 2-87 161-236 (432)
5 PF06598 Chlorovi_GP_rpt: Chlo 18.0 60 0.0013 19.2 0.7 11 158-168 21-31 (34)
6 PF13754 Big_3_4: Bacterial Ig 17.7 62 0.0013 20.4 0.8 26 143-168 12-42 (54)
7 PRK15244 virulence protein Spv 13.8 1.4E+02 0.0031 28.4 2.4 21 116-136 130-151 (591)
8 PF15092 UPF0728: Uncharacteri 13.3 1.3E+02 0.0028 21.6 1.5 17 1-18 1-17 (88)
9 cd08523 Reeler_cohesin_like Do 11.4 3.6E+02 0.0079 20.3 3.6 36 117-152 2-40 (124)
10 PF12245 Big_3_2: Bacterial Ig 11.3 1.6E+02 0.0034 19.0 1.4 23 146-168 13-41 (60)
No 1
>KOG2291|consensus
Probab=100.00 E-value=1.6e-50 Score=360.65 Aligned_cols=163 Identities=42% Similarity=0.733 Sum_probs=155.6
Q ss_pred CceeeeceEEEeeCCCCCCCCCc-----cEEEEEecC----cceEEEEEeeEEEEEEecCCcceeeeeecCCCceecceE
Q psy6410 2 PTTQVEQTITYGPYENVPPYTKA-----NITIHYENN----SPFLVVTRLVRQIEVSHWGTLNIESFTSVMPTTQVEQTI 72 (169)
Q Consensus 2 ~~~~~~~~i~Ygp~~~v~p~~~~-----~~~v~y~~n----SPY~t~~~l~rq~~~~~~gs~~veeyt~~~~~~~~~~~l 72 (169)
|+++.+..|.++....+.|||.+ +|.|.|++| |||.|++ |++.+++++.+||+||+.++.+++|++|
T Consensus 121 pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~----Q~t~ikl~Ss~ies~T~~~~~k~~gn~l 196 (602)
T KOG2291|consen 121 PGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKS----QSTTIKLPSSKIESYTTVEPSKRSGNEL 196 (602)
T ss_pred CCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccc----eeEEEEcccccceeccccCcccccCcee
Confidence 67889999999999999999976 699999999 9999999 9999999999999999999999999999
Q ss_pred EecccccCCCCCcccEEEEEecCCCeeEEEEEEEEEEeecc------ceeeeEEecCCcCCCcCcceeccccc----cCc
Q psy6410 73 TYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHW------EHIHLKHDGAKLKGTFSRYDYQRDSA----HGI 142 (169)
Q Consensus 73 ~yGp~~~v~pfs~~~~~vhye~~~P~~~v~~L~R~ievSHW------e~~~l~n~GA~Lkg~FsR~d~~~~~~----~~~ 142 (169)
+||||+|+++||..|+.||||||.||.++.+|+|+|||||| |+|+|+|+||+|||+|||+|||+++. +++
T Consensus 197 ~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg~FSR~d~q~~~~~~g~sai 276 (602)
T KOG2291|consen 197 KYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKGPFSRLDYQKQRRTRGASAI 276 (602)
T ss_pred eecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccCCcchHhhhhcCCcCcchHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999998753 344
Q ss_pred cEEEEeCCCCCCCeEEEeccCeeecC
Q psy6410 143 KSFKTILPAAASDAYYRDEIGKRFIY 168 (169)
Q Consensus 143 ~~~~~~Lp~~a~d~yy~D~iGnvST~ 168 (169)
+++.+.||++|+|+||||+|||||||
T Consensus 277 ~~l~~~LP~~A~dvYYrDeiGNISTS 302 (602)
T KOG2291|consen 277 NSLKTVLPARAKDVYYRDEIGNISTS 302 (602)
T ss_pred HHHHhhCCCccCceeeecccCcEehh
Confidence 88999999999999999999999998
No 2
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-48 Score=347.60 Aligned_cols=164 Identities=48% Similarity=0.788 Sum_probs=155.4
Q ss_pred CceeeeceEEEeeCCCCCCCCCc-----cEEEEEecC----cceEEEEEeeEEEEEEecCCcceeeeeecC---CCceec
Q psy6410 2 PTTQVEQTITYGPYENVPPYTKA-----NITIHYENN----SPFLVVTRLVRQIEVSHWGTLNIESFTSVM---PTTQVE 69 (169)
Q Consensus 2 ~~~~~~~~i~Ygp~~~v~p~~~~-----~~~v~y~~n----SPY~t~~~l~rq~~~~~~gs~~veeyt~~~---~~~~~~ 69 (169)
|+++..+.+.|...+.+.|+|++ .|.|+|.+| |||+|.+ |++.++.++.+++++++.. +.+++|
T Consensus 91 ~~~~~~l~v~~~~~~~~~P~P~~I~q~e~Q~v~~~~~~~~~SpY~t~~----q~t~i~~~~~~i~s~t~~~~~~~~~~~~ 166 (432)
T PF04597_consen 91 PGEKVTLTVEYVLTHALKPYPAEITQGEKQLVLFTGNAYPLSPYPTKK----QKTKIKLPSSKIESYTKVEFEKPPKKKG 166 (432)
T ss_pred CCCEEEEEEEEEecccceEcCCcccCCCceEEEEEcCEEecCCccccE----EEEEEEecCCceecccCccccCCceecC
Confidence 57889999999999999999986 699999999 9999999 9999999999999999998 889999
Q ss_pred ceEEecccccCCCCCcccEEEEEecCCCeeEEEEEEEEEEeecc------ceeeeEEecCCcCCCcCcceecccccc---
Q psy6410 70 QTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHW------EHIHLKHDGAKLKGTFSRYDYQRDSAH--- 140 (169)
Q Consensus 70 ~~l~yGp~~~v~pfs~~~~~vhye~~~P~~~v~~L~R~ievSHW------e~~~l~n~GA~Lkg~FsR~d~~~~~~~--- 140 (169)
++|+||||+|++||+..+|.|||++|.||++|.+|+|+|||||| |+|+|+|+||+|||+|||+|||+++..
T Consensus 167 ~~i~yGP~~~v~p~~~~~~~vhye~n~P~~~v~~l~R~IeVSHWgni~veE~y~l~N~GA~Lkg~FSR~d~~~~~~~~~~ 246 (432)
T PF04597_consen 167 NTITYGPYENVPPFSSQPLSVHYENNAPFLTVTSLERDIEVSHWGNIAVEEYYELRNDGAKLKGGFSRLDYQKSQNSNRG 246 (432)
T ss_pred CeEEeccccccCCCCcccEEEEEECCCCceEEEEEEEEEEEcCCccEEEEEEEEEEEcCcccCCCcCHHHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999977433
Q ss_pred --CccEEEEeCCCCCCCeEEEeccCeeecCC
Q psy6410 141 --GIKSFKTILPAAASDAYYRDEIGKRFIYS 169 (169)
Q Consensus 141 --~~~~~~~~Lp~~a~d~yy~D~iGnvST~~ 169 (169)
.+++|+++||++|+|+||||+|||||||.
T Consensus 247 ~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~ 277 (432)
T PF04597_consen 247 SSALKSLETILPASASDVYYRDEIGNISTSH 277 (432)
T ss_pred ChhheEEeccCCCccCCeEEEcCCccEEEEE
Confidence 44999999999999999999999999983
No 3
>KOG2291|consensus
Probab=99.55 E-value=5.6e-15 Score=133.28 Aligned_cols=69 Identities=38% Similarity=0.851 Sum_probs=65.0
Q ss_pred CceeeeceEEEeeCCCCCCCCCccEEEEEecCcceEEEEEeeEEEEEEecCCcceeeeeecCCCceecceEE
Q psy6410 2 PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGTLNIESFTSVMPTTQVEQTIT 73 (169)
Q Consensus 2 ~~~~~~~~i~Ygp~~~v~p~~~~~~~v~y~~nSPY~t~~~l~rq~~~~~~gs~~veeyt~~~~~~~~~~~l~ 73 (169)
|.++.|+.|+||||++|++|+..++.||||+|+|+.++.+|+|++|++|||+++|+|++++.+.+ ++|+
T Consensus 188 ~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~g---AkLk 256 (602)
T KOG2291|consen 188 PSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKG---AKLK 256 (602)
T ss_pred cccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecc---eecc
Confidence 45688999999999999999999999999999999999999999999999999999999997765 8887
No 4
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=99.52 E-value=1.7e-14 Score=129.04 Aligned_cols=76 Identities=43% Similarity=0.897 Sum_probs=70.9
Q ss_pred CceeeeceEEEeeCCCCCCCCCccEEEEEecCcceEEEEEeeEEEEEEecCCcceeeeeecCCCceecceEEecccccCC
Q psy6410 2 PTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGTLNIESFTSVMPTTQVEQTITYGPYENVP 81 (169)
Q Consensus 2 ~~~~~~~~i~Ygp~~~v~p~~~~~~~v~y~~nSPY~t~~~l~rq~~~~~~gs~~veeyt~~~~~~~~~~~l~yGp~~~v~ 81 (169)
|.++.+++|+|||+++++|++.+++.|||++|.|+.++++|+|.+|++|||+++|||++++.|.+ ++|+ .
T Consensus 161 ~~~~~~~~i~yGP~~~v~p~~~~~~~vhye~n~P~~~v~~l~R~IeVSHWgni~veE~y~l~N~G---A~Lk-------g 230 (432)
T PF04597_consen 161 PPKKKGNTITYGPYENVPPFSSQPLSVHYENNAPFLTVTSLERDIEVSHWGNIAVEEYYELRNDG---AKLK-------G 230 (432)
T ss_pred CceecCCeEEeccccccCCCCcccEEEEEECCCCceEEEEEEEEEEEcCCccEEEEEEEEEEEcC---cccC-------C
Confidence 67899999999999999999999999999999999999999999999999999999999998866 8898 6
Q ss_pred CCCccc
Q psy6410 82 PYTKAN 87 (169)
Q Consensus 82 pfs~~~ 87 (169)
+|||.+
T Consensus 231 ~FSR~d 236 (432)
T PF04597_consen 231 GFSRLD 236 (432)
T ss_pred CcCHHH
Confidence 677766
No 5
>PF06598 Chlorovi_GP_rpt: Chlorovirus glycoprotein repeat; InterPro: IPR010568 This entry contains a number of repeats found in Chlorovirus glycoproteins. The function of these proteins is unknown.
Probab=18.02 E-value=60 Score=19.19 Aligned_cols=11 Identities=27% Similarity=0.144 Sum_probs=8.4
Q ss_pred EEeccCeeecC
Q psy6410 158 YRDEIGKRFIY 168 (169)
Q Consensus 158 y~D~iGnvST~ 168 (169)
=.|.+|||+.+
T Consensus 21 ~~dI~GNV~a~ 31 (34)
T PF06598_consen 21 NIDIIGNVIAP 31 (34)
T ss_pred EEeEEeeeeec
Confidence 36889999864
No 6
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=17.74 E-value=62 Score=20.41 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=16.4
Q ss_pred cEEEEeCCCCCCC-----eEEEeccCeeecC
Q psy6410 143 KSFKTILPAAASD-----AYYRDEIGKRFIY 168 (169)
Q Consensus 143 ~~~~~~Lp~~a~d-----~yy~D~iGnvST~ 168 (169)
..+.+.+|..+.. +--+|..||+|+.
T Consensus 12 G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 12 GNWSFTVPALADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred CcEEEeCCCCCCccEEEEEEEEeCCCCCCCc
Confidence 3444555554433 3468999999976
No 7
>PRK15244 virulence protein SpvB; Provisional
Probab=13.85 E-value=1.4e+02 Score=28.37 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=15.4
Q ss_pred eeeEEecCCcCCCcCcce-ecc
Q psy6410 116 IHLKHDGAKLKGTFSRYD-YQR 136 (169)
Q Consensus 116 ~~l~n~GA~Lkg~FsR~d-~~~ 136 (169)
|.++-=-++..|+|+|++ |+.
T Consensus 130 ~~V~rYrPRiEg~FsRIE~W~~ 151 (591)
T PRK15244 130 YTVTRYQPRTESSFYRLEYWVG 151 (591)
T ss_pred ceeeEEeccccccceEEEEecc
Confidence 334445688999999999 554
No 8
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=13.27 E-value=1.3e+02 Score=21.62 Aligned_cols=17 Identities=47% Similarity=0.874 Sum_probs=10.7
Q ss_pred CCceeeeceEEEeeCCCC
Q psy6410 1 MPTTQVEQTITYGPYENV 18 (169)
Q Consensus 1 ~~~~~~~~~i~Ygp~~~v 18 (169)
||. ..--+|.||||++.
T Consensus 1 Mp~-~a~V~iryGPY~a~ 17 (88)
T PF15092_consen 1 MPK-NAYVTIRYGPYSAC 17 (88)
T ss_pred CCC-ccEEEEEecCchhh
Confidence 553 22334899999764
No 9
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=11.38 E-value=3.6e+02 Score=20.33 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.4
Q ss_pred eeEEecCCcCCCcCcceeccccc---cCccEEEEeCCCC
Q psy6410 117 HLKHDGAKLKGTFSRYDYQRDSA---HGIKSFKTILPAA 152 (169)
Q Consensus 117 ~l~n~GA~Lkg~FsR~d~~~~~~---~~~~~~~~~Lp~~ 152 (169)
.|...|+...|++.|+.|.-..- .....++..||.+
T Consensus 2 ~~~~~~~~~~Gs~~~vtf~Vp~e~~~a~ttk~~v~lp~~ 40 (124)
T cd08523 2 SLRALGDVQVGTNLEVTLSIDEPVNFAPEIEFTVNLKSN 40 (124)
T ss_pred ceeccccccCCceEEEEEECCCCccCcceEEEEEEcCCC
Confidence 46677778899999999974422 2337788999998
No 10
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=11.27 E-value=1.6e+02 Score=18.95 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=15.1
Q ss_pred EEeCCCCCCC------eEEEeccCeeecC
Q psy6410 146 KTILPAAASD------AYYRDEIGKRFIY 168 (169)
Q Consensus 146 ~~~Lp~~a~d------~yy~D~iGnvST~ 168 (169)
...||.+..| +.-+|.-||.+++
T Consensus 13 ~~~~P~~~~dg~yt~~v~a~D~AGN~~~~ 41 (60)
T PF12245_consen 13 STVIPENDADGEYTLTVTATDKAGNTSSS 41 (60)
T ss_pred eccccCccCCccEEEEEEEEECCCCEEEe
Confidence 3457777222 3347999999875
Done!