Query psy6410
Match_columns 169
No_of_seqs 154 out of 369
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:19:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e8p_A Endoglucanase, dockerin 16.9 52 0.0018 19.9 1.2 11 154-164 19-29 (46)
2 2oj5_A Viral attachment protei 14.7 1.5E+02 0.0051 22.3 3.4 42 89-134 110-153 (165)
3 2wzp_P Lactococcal phage P2 OR 14.5 85 0.0029 25.1 2.2 23 145-167 231-253 (326)
4 3loi_A Putative uncharacterize 10.2 83 0.0028 24.0 0.9 17 109-125 64-85 (172)
5 1gwm_A NCP1, non-catalytic pro 10.2 98 0.0034 22.7 1.2 18 125-142 106-123 (153)
6 2jn9_A YKVR protein; SR358, NE 10.1 1.9E+02 0.0063 20.3 2.5 24 143-168 48-71 (105)
7 2jx5_A GLUB(S27A); ubiquitin, 8.6 1.8E+02 0.0062 18.4 1.8 12 143-154 10-21 (69)
8 3ft1_A PHL P 3 allergen; beta- 8.5 1.8E+02 0.006 20.1 1.9 19 112-130 48-66 (100)
9 4gu4_A Outer capsid protein si 8.5 3.7E+02 0.013 21.0 3.9 50 81-134 151-207 (219)
10 1wcu_A CBM29_1, non-catalytic 8.4 1E+02 0.0034 22.7 0.6 15 128-142 113-127 (153)
No 1
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=16.94 E-value=52 Score=19.94 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=9.5
Q ss_pred CCeEEEeccCe
Q psy6410 154 SDAYYRDEIGK 164 (169)
Q Consensus 154 ~d~yy~D~iGn 164 (169)
..++|+|+-|+
T Consensus 19 c~V~YtD~dG~ 29 (46)
T 1e8p_A 19 TKVEYTDASGQ 29 (46)
T ss_dssp SCEEEEETTEE
T ss_pred ceEEEEcCCCc
Confidence 56999999987
No 2
>2oj5_A Viral attachment protein sigma 1; beta-barrel, beta-spiral repeat, aspartic acid cluster, GREE motif, trimer, viral protein; 1.75A {Reovirus SP} PDB: 3eoy_A 2oj6_A
Probab=14.66 E-value=1.5e+02 Score=22.27 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=29.4
Q ss_pred EEEEecCCCeeEEEEEEEEEEeecc--ceeeeEEecCCcCCCcCccee
Q psy6410 89 TIHYENNSPFLVVTRLVRQIEVSHW--EHIHLKHDGAKLKGTFSRYDY 134 (169)
Q Consensus 89 ~vhye~~~P~~~v~~L~R~ievSHW--e~~~l~n~GA~Lkg~FsR~d~ 134 (169)
-|.|.+..-- ..+-|..+|+.| ...+|+|.|-.-..+ +-+||
T Consensus 110 Aiq~~~g~~r---~dafrilgv~eW~dG~Lei~n~GGty~~H-t~v~W 153 (165)
T 2oj5_A 110 AIGLSSGGTP---QYMSKNLWVEQWQDGVLRLRVEGGGSITH-SNSKW 153 (165)
T ss_dssp EEEEESSSSC---EEEEEEEEEEEEETTEEEEEEECSCCCCC-SEEEE
T ss_pred EEEeecCCce---ehhhhhcchhhhhCceEEEEEcCCceeec-ccccc
Confidence 4677774333 356789999999 889999999766554 33455
No 3
>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S 2x54_S 2x5a_S
Probab=14.50 E-value=85 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEeCCCCCCCeEEEeccCeeec
Q psy6410 145 FKTILPAAASDAYYRDEIGKRFI 167 (169)
Q Consensus 145 ~~~~Lp~~a~d~yy~D~iGnvST 167 (169)
+.-.||.-...+=|-|.|||--|
T Consensus 231 ly~~lp~~p~gvrfld~igneyt 253 (326)
T 2wzp_P 231 LYPKLPKTPAGVRFLDDIGNEYT 253 (326)
T ss_dssp EEECSTTSCEEEEEEETTSCEEE
T ss_pred hcccCCCCCcceeehhhcCCeeE
Confidence 44569999999999999999544
No 4
>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*
Probab=10.25 E-value=83 Score=24.01 Aligned_cols=17 Identities=6% Similarity=0.294 Sum_probs=14.6
Q ss_pred Eeecc-----ceeeeEEecCCc
Q psy6410 109 EVSHW-----EHIHLKHDGAKL 125 (169)
Q Consensus 109 evSHW-----e~~~l~n~GA~L 125 (169)
++||| +.++..+.|+-|
T Consensus 64 ~~S~~HRv~sdEiW~~~~G~pL 85 (172)
T 3loi_A 64 QPDPFHRVKSDETFVHNLGGSM 85 (172)
T ss_dssp CCEEEEECSSEEEEEEEEESCE
T ss_pred CCccCEEecCCEEEEEEcCCCE
Confidence 58999 888899999887
No 5
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain, glucomannan, cellohexaose, mannohexaose, cellulosome; HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19 PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A 1w8z_A 1w9f_A 1oh3_A*
Probab=10.16 E-value=98 Score=22.71 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.9
Q ss_pred cCCCcCcceeccccccCc
Q psy6410 125 LKGTFSRYDYQRDSAHGI 142 (169)
Q Consensus 125 Lkg~FsR~d~~~~~~~~~ 142 (169)
..=.|.|+++|.+..+++
T Consensus 106 ~~~~FDRI~~QD~P~~~~ 123 (153)
T 1gwm_A 106 FDLPFDRIDFQDAPGNGD 123 (153)
T ss_dssp CSSCBCEEEEEETTCSCC
T ss_pred CcccccEEEEecCCCCCC
Confidence 445899999998766655
No 6
>2jn9_A YKVR protein; SR358, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: b.45.3.1
Probab=10.13 E-value=1.9e+02 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCCCeEEEeccCeeecC
Q psy6410 143 KSFKTILPAAASDAYYRDEIGKRFIY 168 (169)
Q Consensus 143 ~~~~~~Lp~~a~d~yy~D~iGnvST~ 168 (169)
.-|....|. .++-||-.|+|-|||
T Consensus 48 ~tF~V~vPE--~~l~FrgtI~~YsTS 71 (105)
T 2jn9_A 48 KTFNVEVPE--RDLAFRGEMTNYSTS 71 (105)
T ss_dssp SCEEEEETT--TTEEEEEBCCSCSSC
T ss_pred ceeeeEccc--ccceeeEEeeheeee
Confidence 668888888 788999999999997
No 7
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=8.55 E-value=1.8e+02 Score=18.35 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=10.2
Q ss_pred cEEEEeCCCCCC
Q psy6410 143 KSFKTILPAAAS 154 (169)
Q Consensus 143 ~~~~~~Lp~~a~ 154 (169)
+.+.+.||++|+
T Consensus 10 q~lpfelpaga~ 21 (69)
T 2jx5_A 10 QTLPFELPAGAR 21 (69)
T ss_dssp EEEEEECCTTCC
T ss_pred cccccccccccc
Confidence 568899999986
No 8
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A
Probab=8.52 E-value=1.8e+02 Score=20.05 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=14.0
Q ss_pred ccceeeeEEecCCcCCCcC
Q psy6410 112 HWEHIHLKHDGAKLKGTFS 130 (169)
Q Consensus 112 HWe~~~l~n~GA~Lkg~Fs 130 (169)
+|-..+-.|.++.|+|.||
T Consensus 48 rwGa~W~~~s~~~l~GplS 66 (100)
T 3ft1_A 48 KKGNVWEVKSSKPLVGPFN 66 (100)
T ss_dssp EETTEEEEECSSCCCSSEE
T ss_pred ccCCEeEeCCCCCCCCCEE
Confidence 4544556678889999887
No 9
>4gu4_A Outer capsid protein sigma-1; triple beta-spiral, beta-barrel, beta-spiral repeat, greek K viral attachment protein; HET: SIA GAL BGC; 3.50A {Mammalian orthoreovirus 1} PDB: 4gu3_A*
Probab=8.46 E-value=3.7e+02 Score=21.05 Aligned_cols=50 Identities=22% Similarity=0.445 Sum_probs=34.4
Q ss_pred CCCCcccE-----EEEEecCCCeeEEEEEEEEEEeecc--ceeeeEEecCCcCCCcCccee
Q psy6410 81 PPYTKANI-----TIHYENNSPFLVVTRLVRQIEVSHW--EHIHLKHDGAKLKGTFSRYDY 134 (169)
Q Consensus 81 ~pfs~~~~-----~vhye~~~P~~~v~~L~R~ievSHW--e~~~l~n~GA~Lkg~FsR~d~ 134 (169)
|+|..+++ .|.|.+..-- ...-|..||+.| ...+|+|.|-.-..| +-+||
T Consensus 151 Ps~ttdp~stTf~Aiq~~nG~~r---~dafrilgV~eW~dGeLei~n~GGty~~H-t~v~W 207 (219)
T 4gu4_A 151 PSSTIDPLSTTFAAVQFLNNGQR---IDAFRIMGVSEWTDGELEIKNYGGTYTGH-TQVYW 207 (219)
T ss_dssp CSCCCSCSEEEEEEEEEECSSSE---EEEEEEEEEEEEETTEEEEEEEECSCCCC-SEEEE
T ss_pred CccccCccceeeEEEEeecCCcc---hhhhhhcchhhhhCcEEEEEEcCCceeec-ccccc
Confidence 45666665 4567664433 356789999999 889999999776655 33455
No 10
>1wcu_A CBM29_1, non-catalytic protein 1; carbohydrate binding, carbohydrate binding module; 1.5A {Piromyces equi}
Probab=8.37 E-value=1e+02 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.1
Q ss_pred CcCcceeccccccCc
Q psy6410 128 TFSRYDYQRDSAHGI 142 (169)
Q Consensus 128 ~FsR~d~~~~~~~~~ 142 (169)
.|.|+++|.+..+++
T Consensus 113 ~FDRI~~QD~P~~~~ 127 (153)
T 1wcu_A 113 QFDRIIVQDGPASNI 127 (153)
T ss_dssp EESEEEEEETTCCCC
T ss_pred cccEEEEecCCCCCC
Confidence 699999998766555
Done!