Query psy6410
Match_columns 169
No_of_seqs 154 out of 369
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 17:20:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6410.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6410hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kkea2 b.21.1.2 (A:313-455) R 14.0 77 0.0056 21.6 3.4 41 89-134 88-131 (143)
2 d1e8qa_ g.55.1.1 (A:) Cellulos 12.5 38 0.0027 19.1 1.2 12 153-164 18-29 (46)
3 d1gwma_ b.18.1.19 (A:) Non-cat 10.1 47 0.0034 22.7 1.2 18 125-142 106-123 (153)
4 d2i7ra1 d.32.1.2 (A:1-115) Hyp 9.0 52 0.0038 20.2 1.1 19 147-165 90-108 (115)
5 d1yuda1 b.82.1.16 (A:1-158) Hy 8.2 54 0.004 22.7 0.9 25 109-133 50-86 (158)
6 d2jn9a1 b.45.3.1 (A:2-97) Unch 8.0 1.2E+02 0.0089 19.1 2.5 24 143-168 47-70 (96)
7 d1ecsa_ d.32.1.2 (A:) Bleomyci 7.2 79 0.0057 19.1 1.3 17 149-165 96-112 (120)
8 d1jifa_ d.32.1.2 (A:) Bleomyci 6.7 62 0.0045 19.5 0.6 16 151-166 101-116 (122)
9 d1bama_ c.52.1.3 (A:) Restrict 6.4 18 0.0013 26.5 -2.5 20 146-165 140-159 (213)
10 d1nkia_ d.32.1.2 (A:) Fosfomyc 6.3 1E+02 0.0076 18.9 1.6 16 150-165 93-108 (134)
No 1
>d1kkea2 b.21.1.2 (A:313-455) Reovirus attachment protein sigma 1 head domain {Reovirus [TaxId: 10891]}
Probab=13.99 E-value=77 Score=21.60 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=28.8
Q ss_pred EEEEec-CCCeeEEEEEEEEEEeecc--ceeeeEEecCCcCCCcCccee
Q psy6410 89 TIHYEN-NSPFLVVTRLVRQIEVSHW--EHIHLKHDGAKLKGTFSRYDY 134 (169)
Q Consensus 89 ~vhye~-~~P~~~v~~L~R~ievSHW--e~~~l~n~GA~Lkg~FsR~d~ 134 (169)
-|.|.+ ..| ....|..+|+.| ...+|+|.|-.-..+ +-++|
T Consensus 88 av~~~~g~~r----~~a~r~l~v~eW~dGeLei~n~GGt~~~H-t~~~W 131 (143)
T d1kkea2 88 AIGLSSGGAP----QYMSKNLWVEQWQDGVLRLRVEGGGSITH-SNSKW 131 (143)
T ss_dssp EEEEESSSSC----EEEEEEEEEEEEETTEEEEEEECSCCCCC-SEEEE
T ss_pred EEEEecCCcc----hhhhhhhchhhhhCcEEEEEEcCCceeee-ccccc
Confidence 356666 333 357799999999 889999999766655 33455
No 2
>d1e8qa_ g.55.1.1 (A:) Cellulose docking domain, dockering {Piromyces equi [TaxId: 99929]}
Probab=12.52 E-value=38 Score=19.07 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=9.8
Q ss_pred CCCeEEEeccCe
Q psy6410 153 ASDAYYRDEIGK 164 (169)
Q Consensus 153 a~d~yy~D~iGn 164 (169)
..+++|+|+-|+
T Consensus 18 ~~~V~ytD~dG~ 29 (46)
T d1e8qa_ 18 STKVEYTDASGQ 29 (46)
T ss_dssp GSCEEEEETTEE
T ss_pred CCeEEEecCCCc
Confidence 367999999886
No 3
>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces equi [TaxId: 99929]}
Probab=10.10 E-value=47 Score=22.69 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.9
Q ss_pred cCCCcCcceeccccccCc
Q psy6410 125 LKGTFSRYDYQRDSAHGI 142 (169)
Q Consensus 125 Lkg~FsR~d~~~~~~~~~ 142 (169)
..=.|.|+++|.+..+++
T Consensus 106 ~~~~FDRI~~QD~P~~~~ 123 (153)
T d1gwma_ 106 FDLPFDRIDFQDAPGNGD 123 (153)
T ss_dssp CSSCBCEEEEEETTCSCC
T ss_pred CcccccEEEEecCCCCCC
Confidence 445899999998766655
No 4
>d2i7ra1 d.32.1.2 (A:1-115) Hypotheical protein SP0731 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=9.02 E-value=52 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.8
Q ss_pred EeCCCCCCCeEEEeccCee
Q psy6410 147 TILPAAASDAYYRDEIGKR 165 (169)
Q Consensus 147 ~~Lp~~a~d~yy~D~iGnv 165 (169)
..-|.+.+..|++|--||+
T Consensus 90 ~~~~~g~~~~~~~DPdGn~ 108 (115)
T d2i7ra1 90 TVTDWGTESLLVQGPAGLV 108 (115)
T ss_dssp EECTTSCEEEEEECGGGCE
T ss_pred EEeeCCeEEEEEECCCCCE
Confidence 3467778899999999996
No 5
>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}
Probab=8.25 E-value=54 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.617 Sum_probs=19.0
Q ss_pred Eeecc-----ceeeeEEecCCc-------CCCcCcce
Q psy6410 109 EVSHW-----EHIHLKHDGAKL-------KGTFSRYD 133 (169)
Q Consensus 109 evSHW-----e~~~l~n~GA~L-------kg~FsR~d 133 (169)
++||| +.++..+.|+-| .|...++-
T Consensus 50 ~~S~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~ 86 (158)
T d1yuda1 50 EVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQ 86 (158)
T ss_dssp CCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEE
T ss_pred CCCceEEecCCeEEEEecCCCEEEEEecCCCCeEEee
Confidence 67889 889999999987 46665543
No 6
>d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}
Probab=8.02 E-value=1.2e+02 Score=19.14 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=19.7
Q ss_pred cEEEEeCCCCCCCeEEEeccCeeecC
Q psy6410 143 KSFKTILPAAASDAYYRDEIGKRFIY 168 (169)
Q Consensus 143 ~~~~~~Lp~~a~d~yy~D~iGnvST~ 168 (169)
+-|....|. +++-||-.|+|-+||
T Consensus 47 ~~FdV~vPE--~~l~Frg~i~~y~TS 70 (96)
T d2jn9a1 47 KTFNVEVPE--RDLAFRGEMTNYSTS 70 (96)
T ss_dssp SCEEEEETT--TTEEEEEBCCSCSSC
T ss_pred cceeeecCc--chhhhhhhhhhhhhh
Confidence 556777787 678899999999987
No 7
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=7.23 E-value=79 Score=19.13 Aligned_cols=17 Identities=18% Similarity=-0.079 Sum_probs=14.0
Q ss_pred CCCCCCCeEEEeccCee
Q psy6410 149 LPAAASDAYYRDEIGKR 165 (169)
Q Consensus 149 Lp~~a~d~yy~D~iGnv 165 (169)
-|.+.+..|++|-=||+
T Consensus 96 ~~~G~r~~~~~DPDGn~ 112 (120)
T d1ecsa_ 96 QGWGGTMAALVDPDGTL 112 (120)
T ss_dssp CTTSSEEEEEECTTSCE
T ss_pred cCCCcEEEEEECCCCCE
Confidence 45667889999999996
No 8
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=6.74 E-value=62 Score=19.53 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.7
Q ss_pred CCCCCeEEEeccCeee
Q psy6410 151 AAASDAYYRDEIGKRF 166 (169)
Q Consensus 151 ~~a~d~yy~D~iGnvS 166 (169)
.+.+.+|++|-=||+=
T Consensus 101 ~g~~~~~~~DPdGn~i 116 (122)
T d1jifa_ 101 PAGREFAVRDPAGNCV 116 (122)
T ss_dssp TTEEEEEEECTTCCEE
T ss_pred CCeEEEEEECCCCCEE
Confidence 3456799999999973
No 9
>d1bama_ c.52.1.3 (A:) Restriction endonuclease BamHI {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=6.42 E-value=18 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=17.3
Q ss_pred EEeCCCCCCCeEEEeccCee
Q psy6410 146 KTILPAAASDAYYRDEIGKR 165 (169)
Q Consensus 146 ~~~Lp~~a~d~yy~D~iGnv 165 (169)
-.+||.+..-.|-||-|||-
T Consensus 140 iLilP~r~my~YLTDRigNf 159 (213)
T d1bama_ 140 IILMPIKQLAYYLTDRVTNF 159 (213)
T ss_dssp EEEEECHHHHTTBCSSCCCH
T ss_pred EEEeehHHHHHHHHHhcCCh
Confidence 45789999999999999994
No 10
>d1nkia_ d.32.1.2 (A:) Fosfomycin resistance protein A (FosA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.26 E-value=1e+02 Score=18.91 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=12.5
Q ss_pred CCCCCCeEEEeccCee
Q psy6410 150 PAAASDAYYRDEIGKR 165 (169)
Q Consensus 150 p~~a~d~yy~D~iGnv 165 (169)
+.....+||+|--||.
T Consensus 93 ~~~~~~~~f~DPdGn~ 108 (134)
T d1nkia_ 93 RSEGDSFYFLDPDGHR 108 (134)
T ss_dssp CSSSCEEEEECTTCCE
T ss_pred CcceeEEEEECCCCCE
Confidence 3345779999999995
Done!