RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6410
         (169 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.20
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 55/120 (45%)

Query: 1   MPTTQVEQTITYGPYENVPPYTKANITIHYENNSPFLVVTRLVRQIEVSHWGTLNIESFT 60
           +P + +E ++     E VP              SP L ++ L ++               
Sbjct: 319 LPPSILEDSLENN--EGVP--------------SPMLSISNLTQE--------------- 347

Query: 61  SVMPTTQVEQTITYGPYEN--VPPYTKANITIHYENNSP--FLVVT-------RLVRQIE 109
                 QV+  +      N  +P   +  I++    N      VV+        L   + 
Sbjct: 348 ------QVQDYVN---KTNSHLPAGKQVEISLV---NGAKNL-VVSGPPQSLYGLNLTLR 394


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 2.3
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 59/144 (40%)

Query: 28  IHYENNSPFLVVTRLVRQIEVSHWGTLNIESFTSVMPTTQVEQTITYGPYENVPPYTKAN 87
           I  E   P                 ++    +       Q ++      Y +   + K N
Sbjct: 98  IKTEQRQP-----------------SMMTRMYIE-----QRDRL-----YNDNQVFAKYN 130

Query: 88  ITIHYENNSPFLVVTRLVRQIEVSHWEHIHLKHDGAKLKGTFSRYDYQRDSAHGIKSFKT 147
           ++       P+L + + + ++  +    I     G  + G+            G    KT
Sbjct: 131 VSRL----QPYLKLRQALLELRPAKNVLID----G--VLGS------------G----KT 164

Query: 148 ILPAAASDAYYRDEIGKRF---IY 168
            +   A D     ++  +    I+
Sbjct: 165 WV---ALDVCLSYKVQCKMDFKIF 185



 Score = 26.4 bits (57), Expect = 6.4
 Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 31/132 (23%)

Query: 37  LVVTRLVRQIEVSHWGTLNIESFTSVMPTTQVEQTITYGPYENVPPYTKA---NITIHYE 93
           L+ TR               +    +   T    ++      +    T     ++ + Y 
Sbjct: 269 LLTTR-------------FKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYL 311

Query: 94  NNSPFLVVTRLVRQIEVSHWEHIHLKHDGAKLKGTFSRYDYQRDS-----AHGIKSFKTI 148
           +  P      L R++  ++   + +      ++   + +D  +          I+S   +
Sbjct: 312 DCRPQ----DLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 149 LPAAASDAYYRD 160
           L  A     +  
Sbjct: 366 LEPAEYRKMFDR 377


>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
           genomics of infec diseases, csgid, metal binding,
           transferase; 1.70A {Bacteroides thetaiotaomicron}
          Length = 199

 Score = 26.1 bits (58), Expect = 5.5
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 19  PPYTKANITIHYENNSPFLVVTRLVRQIE 47
           P YT+A    + +       +   V++++
Sbjct: 166 PFYTQAQYIFNADELEDRWQIESSVQRLQ 194



 Score = 26.1 bits (58), Expect = 5.5
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 81  PPYTKANITIHYENNSPFLVVTRLVRQIE 109
           P YT+A    + +       +   V++++
Sbjct: 166 PFYTQAQYIFNADELEDRWQIESSVQRLQ 194


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,601,085
Number of extensions: 142486
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 13
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)