RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6410
         (169 letters)



>d1eu3a2 d.15.6.1 (A:97-209) Streptococcal superantigen Smez-2
          {Streptococcus pyogenes [TaxId: 1314]}
          Length = 113

 Score = 24.7 bits (54), Expect = 3.8
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 12 YGPYENVPPYTKANITIHYENNS 34
          +  Y +   Y    +  H  +NS
Sbjct: 49 HQLYSSGSSYKSGRLVFHTNDNS 71



 Score = 24.7 bits (54), Expect = 3.8
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 74 YGPYENVPPYTKANITIHYENNS 96
          +  Y +   Y    +  H  +NS
Sbjct: 49 HQLYSSGSSYKSGRLVFHTNDNS 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,326
Number of extensions: 27803
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 19
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)