Query psy6412
Match_columns 181
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 17:21:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.9 5.3E-26 1.1E-30 173.7 13.9 142 12-164 1-142 (143)
2 KOG0035|consensus 99.7 3.4E-20 7.5E-25 181.5 -5.7 160 1-170 1-160 (890)
3 cd05887 Ig1_Nectin-3_like Firs 92.0 2.3 5E-05 31.8 9.2 83 26-113 2-89 (96)
4 cd05889 Ig1_DNAM-1_like First 88.8 1.7 3.6E-05 32.5 6.0 61 26-86 2-66 (96)
5 cd05846 Ig1_MRC-OX-2_like Firs 85.6 2.2 4.8E-05 30.6 5.0 83 25-111 2-88 (97)
6 cd05886 Ig1_Nectin-1_like Firs 78.7 20 0.00044 26.6 8.1 79 27-110 3-89 (99)
7 PF08530 PepX_C: X-Pro dipepti 63.7 76 0.0016 25.8 8.9 80 74-156 88-179 (218)
8 PF02327 BChl_A: Bacteriochlor 62.5 24 0.00052 32.5 6.2 47 96-143 5-51 (357)
9 cd05718 Ig1_PVR_like First imm 60.9 53 0.0011 22.7 9.7 83 25-111 1-89 (98)
10 PHA02987 Ig domain OX-2-like p 55.1 92 0.002 26.8 8.2 91 24-119 30-121 (189)
11 cd04042 C2A_MCTP_PRT C2 domain 52.3 59 0.0013 23.8 5.9 60 96-157 61-120 (121)
12 cd05877 Ig_LP_like Immunoglobu 44.8 66 0.0014 22.9 5.0 24 25-48 3-31 (106)
13 PF06523 DUF1106: Protein of u 44.6 11 0.00023 28.6 0.8 15 1-15 1-16 (91)
14 PF15645 Tox-PLDMTX: Dermonecr 43.3 29 0.00062 28.1 3.2 39 59-97 20-70 (135)
15 cd08678 C2_C21orf25-like C2 do 42.9 89 0.0019 23.2 5.7 57 99-155 62-118 (126)
16 PF11520 Cren7: Chromatin prot 40.9 27 0.00058 25.1 2.4 31 62-92 10-49 (60)
17 cd05714 Ig_CSPGs_LP Immunoglob 36.3 1.1E+02 0.0023 21.8 5.1 61 25-85 3-73 (106)
18 cd05888 Ig1_Nectin-4_like Frst 32.8 1.8E+02 0.004 20.9 5.9 60 26-85 2-69 (100)
19 PF12988 DUF3872: Domain of un 32.1 57 0.0012 26.8 3.3 34 68-104 34-73 (137)
20 cd05879 Ig_P0 Immunoglobulin ( 28.7 2.3E+02 0.0049 21.6 6.0 60 25-84 14-84 (116)
21 PF07654 C1-set: Immunoglobuli 27.6 91 0.002 21.5 3.4 27 25-51 9-36 (83)
22 cd08400 C2_Ras_p21A1 C2 domain 25.8 2.3E+02 0.005 21.2 5.5 54 100-155 66-121 (126)
23 cd05761 Ig2_Necl-1-4_like Seco 23.7 2.5E+02 0.0055 19.3 8.2 80 26-120 1-81 (82)
24 cd08682 C2_Rab11-FIP_classI C2 23.7 3E+02 0.0066 20.2 7.0 61 94-154 63-125 (126)
25 cd05847 IgC_CH2_IgE CH2 domain 23.5 1E+02 0.0023 22.5 3.2 71 25-107 15-87 (94)
26 PF02751 TFIIA_gamma_C: Transc 23.2 55 0.0012 22.6 1.5 14 93-106 17-30 (52)
27 PTZ00390 ubiquitin-conjugating 23.2 2E+02 0.0043 23.1 5.0 41 63-103 16-56 (152)
28 cd00098 IgC Immunoglobulin Con 22.4 1.1E+02 0.0024 20.9 3.0 30 25-54 14-44 (95)
29 COG3496 Uncharacterized conser 22.1 80 0.0017 28.4 2.7 56 61-127 161-219 (261)
30 cd05878 Ig_Aggrecan_like Immun 21.8 2.2E+02 0.0048 21.0 4.7 47 26-73 4-63 (110)
31 KOG3646|consensus 21.0 1.4E+02 0.0031 29.1 4.3 66 31-101 105-175 (486)
32 cd07691 Ig_CD3_gamma_delta Imm 20.8 3.1E+02 0.0067 20.0 5.1 44 25-74 7-52 (69)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.94 E-value=5.3e-26 Score=173.74 Aligned_cols=142 Identities=28% Similarity=0.479 Sum_probs=131.6
Q ss_pred ccceeeeEEEEEceeEEEEEcCCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCc
Q psy6412 12 NKRAAKFQFTASFHQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNH 91 (181)
Q Consensus 12 gKrAaKf~Ftas~~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~ 91 (181)
||+|.||+|.+++|+|...+. .+..+.|.|.|++++.. .+++...++..|.+.|. |.+++.+|||+|..++
T Consensus 1 ~~~~~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~----~~~t~~~~~~~~~v~w~--e~~~~~~tl~~~~k~~ 71 (143)
T PF10358_consen 1 KKKAVKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKG----SGTTSRANVKNGKVQWN--EEFSFPCTLYRDKKSK 71 (143)
T ss_pred CCceeeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCcc----ceeeeeeeccccEEEEe--eEEEEEEEEEEcCCCC
Confidence 799999999999999999998 99999999988877665 88888999999999999 9999999999999999
Q ss_pred cccccceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccceeeeeEEeeeeeEEEeecCcc
Q psy6412 92 ELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTKKIVSATLDLTLSCVFLREGKA 164 (181)
Q Consensus 92 ~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~Ki~~AsL~ltlscv~lrEGkA 164 (181)
+|++|+|+|+|+.+..+|+++.||++.|||++||+..+..+..++.|++. +-..|+|.|+|+|+.++++..
T Consensus 72 ~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 72 EFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELREDPD 142 (143)
T ss_pred cEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECccCCC
Confidence 99999999999998888888999999999999999887888888888877 788999999999999999864
No 2
>KOG0035|consensus
Probab=99.74 E-value=3.4e-20 Score=181.45 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=146.9
Q ss_pred ChhhhHHHHhhccceeeeEEEEEceeEEEEEcCCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeE
Q psy6412 1 MASVWKRLQRVNKRAAKFQFTASFHQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTI 80 (181)
Q Consensus 1 M~svwkrlqR~gKrAaKf~Ftas~~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i 80 (181)
|+++|+++||..|+|+||+|+++||++...++.+|.|.+|++ |..|+...|++.+.|++.|++.||++.+..+
T Consensus 1 ~a~~~~~l~~e~~~a~~~~~~~~~e~~q~kTft~W~~s~L~i-------r~~s~ie~~e~D~~n~lk~~~l~ev~~~e~l 73 (890)
T KOG0035|consen 1 MAGGLGRLQREEEWAAKFLLTPAWEKVQLKTFTKWCNSKLRI-------RAGSSIEEIEEDFSNGLKLLILLEVISGENL 73 (890)
T ss_pred CCchhhccchhhHHHHHhhcCccHHHHhccccccccchhhhh-------cccCccchhhhhhhhhhhhhhhcccccCCcc
Confidence 899999999999999999999999999999999999999999 8999999999999999999999998877777
Q ss_pred EEEEecCCCCccccccceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccceeeeeEEeeeeeEEEee
Q psy6412 81 SVTLFKDPRNHELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTKKIVSATLDLTLSCVFLR 160 (181)
Q Consensus 81 ~vTLykd~~~~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~Ki~~AsL~ltlscv~lr 160 (181)
..+...+.+.|++|+++|+++++..++.|+++++|...+|+..|..+. .--+|-+++..++++.+.......|.||.
T Consensus 74 ~~~~~~~~r~hk~En~~~~l~~~~sk~v~~~~iga~eivd~n~~~~l~---~i~tlilr~~i~~is~~~e~~a~egllLw 150 (890)
T KOG0035|consen 74 PPPTRGKMRVHKLENVNKALVFIESKGVKLVSIGAEEIVDGNLKLTLG---LIWTLILRFAIQDISVECELSAKEGLLLW 150 (890)
T ss_pred CCCCCCccchhhhccccceEEEeccccccccccchhhhcCcchhhhhH---HHHHhhccccccchhhhcchhhhhhhhhh
Confidence 777777999999999999999999999999999999999999999776 44456667777777777677788999999
Q ss_pred cCccchhhhh
Q psy6412 161 EGKATINRRI 170 (181)
Q Consensus 161 EGkATDdDm~ 170 (181)
.++.|+++|.
T Consensus 151 cq~~Ta~y~~ 160 (890)
T KOG0035|consen 151 CQRKTAPYSN 160 (890)
T ss_pred eecccCCccc
Confidence 9999999994
No 3
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=92.03 E-value=2.3 Score=31.81 Aligned_cols=83 Identities=8% Similarity=0.108 Sum_probs=52.7
Q ss_pred eEEEEEcCCccCCeeEEEEEeecee----eecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccc-cceEE
Q psy6412 26 QLILESTSKWTPSKLSIVWTRRSRR----VVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELED-KEWTF 100 (181)
Q Consensus 26 eL~le~t~kW~P~kl~Vvw~RR~Rr----~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEd-KEWtf 100 (181)
.+.|.|+-.+.+....|-|++.... +..--+.-.+.+..||+|.|.|.-|.--+.+++|..- .++| ..|+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv----~~~D~G~Y~C 77 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV----GFSDIGVYIC 77 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC----CccccEEEEE
Confidence 4789999889999999999987431 1111112345677899999999766655666666542 2233 44555
Q ss_pred EEeeccCCCCcce
Q psy6412 101 IIEDISSGGKRRP 113 (181)
Q Consensus 101 viE~~~~~GkRk~ 113 (181)
.+-. =|.|.++.
T Consensus 78 ~v~t-fP~G~~~~ 89 (96)
T cd05887 78 KAVT-FPLGNTQS 89 (96)
T ss_pred EEEe-CCCCCeeE
Confidence 5544 45665543
No 4
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=88.80 E-value=1.7 Score=32.50 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=40.6
Q ss_pred eEEEEEcCCccCCeeEEEEEeeceeeecCCccc----ccCCCCCcceEEEeeCCcceeEEEEEec
Q psy6412 26 QLILESTSKWTPSKLSIVWTRRSRRVVTEPMLW----EPTMTDPLRGVVVWAVPENKTISVTLFK 86 (181)
Q Consensus 26 eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW----~p~i~nP~rG~vvW~~Pen~~i~vTLyk 86 (181)
.++|.|.-.+.-.-..|.|.++.........-+ .+.+..||.|+|.|..+..-+.+++|..
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~n 66 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNN 66 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcC
Confidence 467889977665677888999864211222333 4668899999999985533456666653
No 5
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=85.64 E-value=2.2 Score=30.57 Aligned_cols=83 Identities=8% Similarity=0.109 Sum_probs=52.6
Q ss_pred eeEEEEEcCCccCCeeEEEEEeeceeeecCCc----ccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEE
Q psy6412 25 HQLILESTSKWTPSKLSIVWTRRSRRVVTEPM----LWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTF 100 (181)
Q Consensus 25 ~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~----sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtf 100 (181)
+.+.|.|+-.-..+...|.|.+.......... .=...+.++|+|.+.|..|+.-+.+++|-. ...-+...|..
T Consensus 2 ~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~n---v~~~D~G~Y~C 78 (97)
T cd05846 2 GNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWN---VTLEDEGCYKC 78 (97)
T ss_pred CcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeC---CceeeeEEEEE
Confidence 35789998555566678999875432111111 123467889999999998887888888764 22233355777
Q ss_pred EEeeccCCCCc
Q psy6412 101 IIEDISSGGKR 111 (181)
Q Consensus 101 viE~~~~~GkR 111 (181)
.+.. -|.|..
T Consensus 79 ~~~~-~p~g~~ 88 (97)
T cd05846 79 IFNT-FPDGSK 88 (97)
T ss_pred EEEe-CCCCCe
Confidence 6654 566663
No 6
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=78.72 E-value=20 Score=26.59 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=46.6
Q ss_pred EEEEEcCC-ccC--CeeEEEEEeeceeeecCCccccc----CCCCCcceEEEeeCCcceeEEEEEecCCCCccccc-cce
Q psy6412 27 LILESTSK-WTP--SKLSIVWTRRSRRVVTEPMLWEP----TMTDPLRGVVVWAVPENKTISVTLFKDPRNHELED-KEW 98 (181)
Q Consensus 27 L~le~t~k-W~P--~kl~Vvw~RR~Rr~~sk~~sW~p----~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEd-KEW 98 (181)
+.|-|+=. ..| +-+.|.|++....-.....-..| .+..||+|.|-|..|.--|.+++|-. =.++| ..|
T Consensus 3 v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~n----l~~~D~G~Y 78 (99)
T cd05886 3 VVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSR----LELEDEGVY 78 (99)
T ss_pred EEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcC----CccccCEEE
Confidence 44555522 233 45579998663211111222333 57789999999987776777777764 22333 457
Q ss_pred EEEEeeccCCCC
Q psy6412 99 TFIIEDISSGGK 110 (181)
Q Consensus 99 tfviE~~~~~Gk 110 (181)
+..+-+ -|.|.
T Consensus 79 ~C~v~t-~P~g~ 89 (99)
T cd05886 79 ICEFAT-FPTGN 89 (99)
T ss_pred EEEEEe-CCCCC
Confidence 777666 56664
No 7
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=63.71 E-value=76 Score=25.81 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCcceeE----EEEEecCCCCccccccceEEEEeeccCCCCcceeEEeeeccccccCCC-------CcceeeeEeeeccc
Q psy6412 74 VPENKTI----SVTLFKDPRNHELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASVD-------STQHQMNLEFKPCT 142 (181)
Q Consensus 74 ~Pen~~i----~vTLykd~~~~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~-------~~q~~l~L~lkP~S 142 (181)
.++.++| .++|+=-.... |-+|...|+|+.+.|+.+.|..+-+|+...++.. ....++.|.|.|..
T Consensus 88 l~~~~~i~G~~~l~L~vs~~~~---d~~l~v~L~dv~pdG~~~~it~G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p~~ 164 (218)
T PF08530_consen 88 LEEDLEITGPPSLRLWVSSDAP---DADLFVRLSDVDPDGTSTLITRGWLRASHRESDEKPEPLEPGEPYDVTIELQPTA 164 (218)
T ss_dssp -SS-EEEEEEEEEEEEEEESSS---S-EEEEEEEEEETTSSEEEEEEEEEEGGGSSCSSST----TT-EEEEEEEEEEEE
T ss_pred CCcCEEEEcceEEEEEEEecCC---CcEEEEEEEEeCCCCCEEEccceEEEcccccCccccccCCCCcEEEEEEEEchhc
Confidence 4466654 47777654443 5589999999999999999999999998777543 24457888888877
Q ss_pred ceeeee-EEeeeeeE
Q psy6412 143 KKIVSA-TLDLTLSC 156 (181)
Q Consensus 143 ~Ki~~A-sL~ltlsc 156 (181)
..+..- +|.|.|++
T Consensus 165 ~~~~~GhrLrl~I~~ 179 (218)
T PF08530_consen 165 YVFPAGHRLRLSISS 179 (218)
T ss_dssp EEE-TT-EEEEEEES
T ss_pred cEECCCCEEEEEEEe
Confidence 666543 46666654
No 8
>PF02327 BChl_A: Bacteriochlorophyll A protein; InterPro: IPR003426 Bacteriochlorophyll A (or FMO) protein is involved in the energy transfer system of photosynthetic bacteria, such as Green Sulphur Bacteria. Bacteriochlorophyll A acts as a light-harvesting complex that directs light energy from the chlorosomes attached to the cell membrane to the reaction centre []. The protein forms a homotrimer, with each monomer unit containing seven molecules of bacteriochlorophyll A.; GO: 0015979 photosynthesis; PDB: 3EOJ_A 3ENI_C 3BSD_A.
Probab=62.47 E-value=24 Score=32.47 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=33.9
Q ss_pred cceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccc
Q psy6412 96 KEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTK 143 (181)
Q Consensus 96 KEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~ 143 (181)
-+|.+++|. .+++=-++=|.+.||+.--.-+.|+.-++||+.||+-.
T Consensus 5 ~dYeiiLeg-gssswg~vk~rAkvNVP~A~pLlpadcniKi~aKpld~ 51 (357)
T PF02327_consen 5 SDYEIILEG-GSSSWGKVKGRAKVNVPPASPLLPADCNIKIEAKPLDP 51 (357)
T ss_dssp EEEEEEE-S-TT---EEEEEEEEE-S--S-SSSSEEEEEEEEEEEECT
T ss_pred CceEEEEec-CCCccceeeeeEeecCCCCCCccccccceEeeeeecCc
Confidence 367899998 66777788899999998777778999999999999977
No 9
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=60.86 E-value=53 Score=22.74 Aligned_cols=83 Identities=8% Similarity=0.123 Sum_probs=42.2
Q ss_pred eeEEEEEcCCccC--CeeEEEEEeeceee----ecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccce
Q psy6412 25 HQLILESTSKWTP--SKLSIVWTRRSRRV----VTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEW 98 (181)
Q Consensus 25 ~eL~le~t~kW~P--~kl~Vvw~RR~Rr~----~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEW 98 (181)
+.+.|.|+-.=.+ ....|.|.+..... ..-...-...+.++|+|.+-+..+..-+.+++|..- ..=+...|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v---~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL---RLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC---CcccCEEE
Confidence 3578899743223 45689999976431 111111122345677888777654434455555431 11222446
Q ss_pred EEEEeeccCCCCc
Q psy6412 99 TFIIEDISSGGKR 111 (181)
Q Consensus 99 tfviE~~~~~GkR 111 (181)
...+.. -+.|..
T Consensus 78 ~C~v~~-~~~g~~ 89 (98)
T cd05718 78 ICEFAT-FPQGNR 89 (98)
T ss_pred EEEEEe-CCCCcE
Confidence 665543 244543
No 10
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=55.10 E-value=92 Score=26.77 Aligned_cols=91 Identities=7% Similarity=0.139 Sum_probs=61.9
Q ss_pred ceeEEEEEcCCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 24 FHQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 24 ~~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
.+++.|.|+-+=-.+...|-|.+.+..+.+= ..-.|.+.+||++.+-++.|.--+..+++-.-.. =+...|+....
T Consensus 30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY-~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~---sDeGcY~C~F~ 105 (189)
T PHA02987 30 HVNVKISCNKTSSFNSILITWKKNNKTIAGY-GPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL---KDNGCYTCIFN 105 (189)
T ss_pred CCCEEEEEecCCCCccceEEEEEcCCCEEEE-ecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh---hhCeEEEEEEE
Confidence 4559999997622267789999987766643 3456899999999998988877777777775322 22355665554
Q ss_pred eccCCC-CcceeEEeee
Q psy6412 104 DISSGG-KRRPLATAVL 119 (181)
Q Consensus 104 ~~~~~G-kRk~LAs~~i 119 (181)
= =|.| .++.-+..++
T Consensus 106 t-fp~G~~~~gt~CLtV 121 (189)
T PHA02987 106 T-LLSKNNEKGVVCLNV 121 (189)
T ss_pred e-cCCCCCceeEEEEEE
Confidence 4 4666 7775554444
No 11
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=52.30 E-value=59 Score=23.84 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=43.4
Q ss_pred cceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccceeeeeEEeeeeeEE
Q psy6412 96 KEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTKKIVSATLDLTLSCV 157 (181)
Q Consensus 96 KEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~Ki~~AsL~ltlscv 157 (181)
..-.|.|-|....|+-..|+.+.++++......+ .+..+.|.+-...-...+|.|.+++.
T Consensus 61 ~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~--~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 61 QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKP--TEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred CeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCC--eEEEEECCCCCCccCceEEEEEEEEC
Confidence 4567777777777888999999999998885444 45566666555434677888887763
No 12
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=44.78 E-value=66 Score=22.89 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=18.1
Q ss_pred eeEEEEEcCCccC-----CeeEEEEEeec
Q psy6412 25 HQLILESTSKWTP-----SKLSIVWTRRS 48 (181)
Q Consensus 25 ~eL~le~t~kW~P-----~kl~Vvw~RR~ 48 (181)
+.++|.|+-...| ..+.|.|.+..
T Consensus 3 ~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 3 GNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 3578999866663 56789999875
No 13
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=44.63 E-value=11 Score=28.62 Aligned_cols=15 Identities=53% Similarity=0.813 Sum_probs=10.7
Q ss_pred ChhhhHHHHh-hccce
Q psy6412 1 MASVWKRLQR-VNKRA 15 (181)
Q Consensus 1 M~svwkrlqR-~gKrA 15 (181)
|+|+||||-- .|+|-
T Consensus 1 maslwkrlfy~~g~rr 16 (91)
T PF06523_consen 1 MASLWKRLFYFPGQRR 16 (91)
T ss_pred ChhHhHHHhcCCccee
Confidence 9999999853 34443
No 14
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=43.34 E-value=29 Score=28.11 Aligned_cols=39 Identities=28% Similarity=0.629 Sum_probs=32.3
Q ss_pred ccCCCC-CcceEEEee-----CCcceeEEEEEec------CCCCccccccc
Q psy6412 59 EPTMTD-PLRGVVVWA-----VPENKTISVTLFK------DPRNHELEDKE 97 (181)
Q Consensus 59 ~p~i~n-P~rG~vvW~-----~Pen~~i~vTLyk------d~~~~~fEdKE 97 (181)
++|++| -|+|+-.|. .|+|+-+.+.=+. |+..++|+.+.
T Consensus 20 ~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~~g~eyV~D~Ta~QF~~~~ 70 (135)
T PF15645_consen 20 DKGYEDIKYRGLLIWENANDDSPTNHFVVVAKKNGKEYVFDPTAHQFSNKG 70 (135)
T ss_pred hCCCCcceeeEEEEecCCCccCCcceEEEEEEECCEEEEEeCcHHHhhccC
Confidence 578888 579999993 8999999887665 88999998866
No 15
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=42.91 E-value=89 Score=23.20 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=35.3
Q ss_pred EEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccceeeeeEEeeeee
Q psy6412 99 TFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTKKIVSATLDLTLS 155 (181)
Q Consensus 99 tfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~Ki~~AsL~ltls 155 (181)
.|.|-|....|+-..|+.+.|++............+.|+-++....-..++|.|.|.
T Consensus 62 ~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~ 118 (126)
T cd08678 62 LFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFL 118 (126)
T ss_pred EEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEE
Confidence 334444455677899999999999988765555544444333323345666665553
No 16
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=40.86 E-value=27 Score=25.11 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=15.2
Q ss_pred CCCCcceEE-------Eee--CCcceeEEEEEecCCCCcc
Q psy6412 62 MTDPLRGVV-------VWA--VPENKTISVTLFKDPRNHE 92 (181)
Q Consensus 62 i~nP~rG~v-------vW~--~Pen~~i~vTLykd~~~~~ 92 (181)
+++||.|.- +|. +|----|.+.||+||.++-
T Consensus 10 ~~~~~~Gke~~L~P~KvW~L~PkGrkGV~igLFk~P~tGk 49 (60)
T PF11520_consen 10 VKVPYGGKEYELKPIKVWVLQPKGRKGVKIGLFKDPETGK 49 (60)
T ss_dssp EE-T-TS-EEEE--SEEEEE--TTS--EEEEEEE-TTT--
T ss_pred EeccCCCeEEEeeeeEEEEEcCCCCCceEEEEEeCCCCCc
Confidence 356666665 454 3345567899999998654
No 17
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=36.31 E-value=1.1e+02 Score=21.81 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=32.8
Q ss_pred eeEEEEEcCCcc-----CCeeEEEEEeec--eeeecCCccccc---CCCCCcceEEEeeCCcceeEEEEEe
Q psy6412 25 HQLILESTSKWT-----PSKLSIVWTRRS--RRVVTEPMLWEP---TMTDPLRGVVVWAVPENKTISVTLF 85 (181)
Q Consensus 25 ~eL~le~t~kW~-----P~kl~Vvw~RR~--Rr~~sk~~sW~p---~i~nP~rG~vvW~~Pen~~i~vTLy 85 (181)
+.+.|.|+=... +..+.|.|.+.+ .........+.. ....+|+|.+.+..+..-+.+++|-
T Consensus 3 ~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 73 (106)
T cd05714 3 GNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVIT 73 (106)
T ss_pred CCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEEC
Confidence 457899985554 368999999974 100000011121 1245677777665444444555543
No 18
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=32.83 E-value=1.8e+02 Score=20.86 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=30.7
Q ss_pred eEEEEEcCCcc--CCeeEEEEEeecee-----eecCCcccccCCCCCcceEEEeeC-CcceeEEEEEe
Q psy6412 26 QLILESTSKWT--PSKLSIVWTRRSRR-----VVTEPMLWEPTMTDPLRGVVVWAV-PENKTISVTLF 85 (181)
Q Consensus 26 eL~le~t~kW~--P~kl~Vvw~RR~Rr-----~~sk~~sW~p~i~nP~rG~vvW~~-Pen~~i~vTLy 85 (181)
.+.|.|+-... +....|.|.+..-. +..-...-....-.+|+|.+-+.. ++.-+..+++-
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~ 69 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILR 69 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEe
Confidence 46788874322 35679999974321 111001112222347788887763 23344455544
No 19
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=32.13 E-value=57 Score=26.80 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=19.4
Q ss_pred eEEEeeCC------cceeEEEEEecCCCCccccccceEEEEee
Q psy6412 68 GVVVWAVP------ENKTISVTLFKDPRNHELEDKEWTFIIED 104 (181)
Q Consensus 68 G~vvW~~P------en~~i~vTLykd~~~~~fEdKEWtfviE~ 104 (181)
.+-+||+| |++||-.+|=|+ +.|++-.+++--=.
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~re---G~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKRE---GNYADTRYTIRYFQ 73 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEES---S--SS---EEEEE-
T ss_pred EEEEeccccccCCCCEEEEEEEEecC---ceecccEEEEEEEe
Confidence 45689988 899999999975 55999999987555
No 20
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=28.73 E-value=2.3e+02 Score=21.58 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=30.8
Q ss_pred eeEEEEEc-CCccC--CeeEEEEEeeceeeecC--Ccccc-----cCCCCCcceEEEee-CCcceeEEEEE
Q psy6412 25 HQLILEST-SKWTP--SKLSIVWTRRSRRVVTE--PMLWE-----PTMTDPLRGVVVWA-VPENKTISVTL 84 (181)
Q Consensus 25 ~eL~le~t-~kW~P--~kl~Vvw~RR~Rr~~sk--~~sW~-----p~i~nP~rG~vvW~-~Pen~~i~vTL 84 (181)
+.+.|.|+ ....| +.+.|.|+.|...-... .+..+ |.-.-+|+|++-|. .|..-+.++.|
T Consensus 14 ~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 14 SDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred CcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 35677887 33443 36899998875321100 11111 11124788888886 33334444444
No 21
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=27.65 E-value=91 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.543 Sum_probs=21.7
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeeceee
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRSRRV 51 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~Rr~ 51 (181)
+++.|.|. ...-|..+.|.|.+.+..+
T Consensus 9 ~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 9 GSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp SEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCEEEEEEEEEEECCCcEEEEEecccee
Confidence 46788898 7899999999998765443
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=25.83 E-value=2.3e+02 Score=21.16 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=35.0
Q ss_pred EEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecccc--eeeeeEEeeeee
Q psy6412 100 FIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTK--KIVSATLDLTLS 155 (181)
Q Consensus 100 fviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~--Ki~~AsL~ltls 155 (181)
|.+.|....++-..|+.+.|.+..+... ...+.-+.|.|.+. .-....|.|.|+
T Consensus 66 v~v~d~~~~~~d~~iG~v~i~l~~l~~~--~~~~~W~~L~~~~~~~~~~~G~i~l~l~ 121 (126)
T cd08400 66 ISLSNKAKRSKDSEIAEVTVQLSKLQNG--QETDEWYPLSSASPLKGGEWGSLRIRAR 121 (126)
T ss_pred EEEEECCCCCCCCeEEEEEEEHhHccCC--CcccEeEEcccCCCCCCCcCcEEEEEEE
Confidence 4444555677889999999999987752 33466777777653 334455555443
No 23
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=23.73 E-value=2.5e+02 Score=19.31 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=43.3
Q ss_pred eEEEEEc-CCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEee
Q psy6412 26 QLILEST-SKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIED 104 (181)
Q Consensus 26 eL~le~t-~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE~ 104 (181)
|+.|.|. ....|. ..|.|.|.+..+.... .....|..|. ..+..+|.=.+. .+=+...++..+++
T Consensus 1 ~~~L~C~~~~~~P~-~~v~W~~~~~~l~~~~----~~~~~~~~~~--------~~~~s~l~~~~~-~~d~g~~~~C~v~h 66 (82)
T cd05761 1 EVELTCTSSGSKPA-ATIRWFKGDKELKGVK----LKEEDENGKT--------FTVTSSLRFQVD-REDDGAPIICRVDH 66 (82)
T ss_pred CEEEEEEecCcCcC-CeEEEEECCEEccCce----eeEecCCCCE--------EEEEEEEEEEcc-hhhCCCEEEEEEeC
Confidence 4678887 577898 5999999987664321 1111111121 122222322121 11223679999999
Q ss_pred ccCCCCcceeEEeeec
Q psy6412 105 ISSGGKRRPLATAVLN 120 (181)
Q Consensus 105 ~~~~GkRk~LAs~~iN 120 (181)
..-.++ -..++..||
T Consensus 67 ~~l~~~-~~~~~~~~~ 81 (82)
T cd05761 67 PALKST-DKQTQQVLE 81 (82)
T ss_pred hhcCCC-CceeEEEEe
Confidence 665554 336666665
No 24
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=23.66 E-value=3e+02 Score=20.22 Aligned_cols=61 Identities=7% Similarity=0.133 Sum_probs=37.1
Q ss_pred cccceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeee--cccceeeeeEEeeee
Q psy6412 94 EDKEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFK--PCTKKIVSATLDLTL 154 (181)
Q Consensus 94 EdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lk--P~S~Ki~~AsL~ltl 154 (181)
++..-+|.|-|...-|+-..|+.+.|++...........+.-+.|. +-..+-..+.|.|+|
T Consensus 63 ~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred cCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 3445666666666677888999999999998732222333334443 322334466666665
No 25
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=23.50 E-value=1e+02 Score=22.49 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=40.6
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccc-cccceEEEE
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHEL-EDKEWTFII 102 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~f-EdKEWtfvi 102 (181)
..+.|.|. ...-|..+.|.|.|.+.-+......+.|...| .|. ..+..+|--. ..+. ++..++.++
T Consensus 15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~--~~T--------y~~~S~L~v~--~~~w~~~~~ytC~V 82 (94)
T cd05847 15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEE--GST--------FSTTSELNVT--QEDWKSGKTYTCKV 82 (94)
T ss_pred CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECC--CCc--------EEEEEEEEEc--hHHhcCCCeEEEEE
Confidence 34778888 78899999999987655443444444444322 221 2223333111 1232 446788988
Q ss_pred eeccC
Q psy6412 103 EDISS 107 (181)
Q Consensus 103 E~~~~ 107 (181)
+..+.
T Consensus 83 ~H~~~ 87 (94)
T cd05847 83 THQGT 87 (94)
T ss_pred EECCe
Confidence 87543
No 26
>PF02751 TFIIA_gamma_C: Transcription initiation factor IIA, gamma subunit; InterPro: IPR015871 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the beta-barrel domain found at the C-terminal of the gamma subunit of transcription factor TFIIA. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=23.20 E-value=55 Score=22.64 Aligned_cols=14 Identities=36% Similarity=0.947 Sum_probs=12.1
Q ss_pred ccccceEEEEeecc
Q psy6412 93 LEDKEWTFIIEDIS 106 (181)
Q Consensus 93 fEdKEWtfviE~~~ 106 (181)
|=|-=|||+|+|++
T Consensus 17 fcDnVWTFi~kn~~ 30 (52)
T PF02751_consen 17 FCDNVWTFILKNVE 30 (52)
T ss_dssp EETTEEEEEEEEEE
T ss_pred eeCcEEEEEEcCEE
Confidence 78889999999953
No 27
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=23.19 E-value=2e+02 Score=23.07 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 63 TDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 63 ~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
++|-.|..+.+.++|+.---.++..|...-||..-|.|-|+
T Consensus 16 ~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~ 56 (152)
T PTZ00390 16 NDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELF 56 (152)
T ss_pred hCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEE
Confidence 46667888999888874433334456667788888887774
No 28
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=22.44 E-value=1.1e+02 Score=20.91 Aligned_cols=30 Identities=10% Similarity=0.474 Sum_probs=23.4
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeeceeeecC
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRSRRVVTE 54 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~Rr~~sk 54 (181)
+.+.|.|. ....|..+.|.|.+-+..+...
T Consensus 14 ~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~ 44 (95)
T cd00098 14 GSVTLTCLATGFYPPDITVTWLKNGKELTSG 44 (95)
T ss_pred CCeEEEEEEeeEECCCcEEEEEECCEECCCc
Confidence 36788898 6777999999999976655444
No 29
>COG3496 Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=80 Score=28.40 Aligned_cols=56 Identities=27% Similarity=0.338 Sum_probs=41.1
Q ss_pred CCCCCcceEEEeeCC---cceeEEEEEecCCCCccccccceEEEEeeccCCCCcceeEEeeeccccccCC
Q psy6412 61 TMTDPLRGVVVWAVP---ENKTISVTLFKDPRNHELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASV 127 (181)
Q Consensus 61 ~i~nP~rG~vvW~~P---en~~i~vTLykd~~~~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~ 127 (181)
|-=+|+-+.-.|-.| ++++|.||+++|.. -+| .-+--|+|+.|-.++|=++.-.++
T Consensus 161 SPF~~m~lrY~fri~pp~~~l~I~v~~~dd~g-~~~----------~At~agqrr~ltd~~ll~a~i~~P 219 (261)
T COG3496 161 SPFMPMALRYLFRIPPPGRALDIHVTLHDDRG-PEF----------TATLAGQRRPLTDGALLKALIISP 219 (261)
T ss_pred cCcccccceEEEecCCCCceeEEEEEEecCCC-cee----------eeeeccccccCchHHHHHHHHcCc
Confidence 345677888888733 99999999999876 122 236789999999988876655443
No 30
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=21.77 E-value=2.2e+02 Score=20.96 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred eEEEEEcCCccCC---------eeEEEEEeece----eeecCCcccccCCCCCcceEEEee
Q psy6412 26 QLILESTSKWTPS---------KLSIVWTRRSR----RVVTEPMLWEPTMTDPLRGVVVWA 73 (181)
Q Consensus 26 eL~le~t~kW~P~---------kl~Vvw~RR~R----r~~sk~~sW~p~i~nP~rG~vvW~ 73 (181)
.+.|.|+-...|. .+.|.|.+-+- .+.. ..+-++...++|+|++-+.
T Consensus 4 ~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~-~~~~~~~~~~~f~gR~~~~ 63 (110)
T cd05878 4 SVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLV-AQDGVVKVGQEYQGRVSLP 63 (110)
T ss_pred CEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEE-EECCEEEecccccCeEEec
Confidence 4678888665543 58899998631 1110 1133344567788888774
No 31
>KOG3646|consensus
Probab=20.96 E-value=1.4e+02 Score=29.10 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=40.7
Q ss_pred EcCCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCC----cceeEEEEEec-CCCCccccccceEEE
Q psy6412 31 STSKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVP----ENKTISVTLFK-DPRNHELEDKEWTFI 101 (181)
Q Consensus 31 ~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~P----en~~i~vTLyk-d~~~~~fEdKEWtfv 101 (181)
-..=|+||-|-- |.--..=.-.|..-+-.-+.|.|.|.+| -+--|.+|.|. |.+.=++.=..||+-
T Consensus 105 ~~~iWkPDVLLY-----NSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~ 175 (486)
T KOG3646|consen 105 GGNIWKPDVLLY-----NSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYA 175 (486)
T ss_pred CccccCCceecc-----ccccccCCCcceeeEEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEc
Confidence 335677776532 1111111223333344556999999999 78889999997 333344666899994
No 32
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=20.81 E-value=3.1e+02 Score=20.03 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=27.2
Q ss_pred eeEEEEEcCCccCCeeEEEEEeeceeeecCCcccc--cCCCCCcceEEEeeC
Q psy6412 25 HQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWE--PTMTDPLRGVVVWAV 74 (181)
Q Consensus 25 ~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~--p~i~nP~rG~vvW~~ 74 (181)
.+|.|+|... =.|.|...++-.....-.|. -.++|| ||+-.=..
T Consensus 7 ~~V~L~C~~~-----tsi~W~kG~~~~~~~~~tlnLGs~~~DP-RG~Y~C~~ 52 (69)
T cd07691 7 GKVFLKCNGA-----TNITWKKGKEILEVSNTLLDLGSRINDP-RGTYSCKE 52 (69)
T ss_pred ceEEEEecCC-----CcEEEecCcccccccccEEeccCcccCC-CcceEecC
Confidence 4689999752 44999995554433334454 447899 88543333
Done!