Query psy6412
Match_columns 181
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 17:22:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pv7_A B7-H6, IG-like domain-c 64.0 43 0.0015 25.0 9.1 89 25-121 134-224 (248)
2 3eoj_A Bacteriochlorophyll A p 61.6 19 0.00065 31.9 6.7 51 96-147 13-65 (366)
3 2dmh_A Myoferlin; beta-sandwic 54.4 53 0.0018 23.1 7.8 60 96-155 70-130 (140)
4 4g29_A Secreted effector prote 50.8 11 0.00037 31.2 3.1 62 65-126 62-145 (186)
5 2qsq_A Carcinoembryonic antige 45.0 77 0.0026 22.2 7.5 67 24-104 15-93 (111)
6 3liz_H 4C3 monoclonal antibody 43.0 40 0.0014 25.8 5.2 25 25-49 140-165 (253)
7 1gmi_A Protein kinase C, epsil 40.7 67 0.0023 22.7 5.8 44 97-140 78-121 (136)
8 1l7l_A PA-I galactophilic lect 40.4 46 0.0016 25.7 5.0 37 67-103 79-115 (121)
9 4fom_A Poliovirus receptor-rel 36.9 93 0.0032 23.8 6.4 77 25-104 15-95 (308)
10 2l3b_A Conserved protein found 36.3 42 0.0014 26.3 4.2 40 62-104 7-53 (130)
11 1dee_B IGM RF 2A2; FAB-IBP com 35.8 87 0.003 23.3 6.0 27 25-51 142-170 (223)
12 2l7q_A Conserved protein found 35.7 38 0.0013 26.3 3.9 34 68-104 13-52 (124)
13 3i2k_A Cocaine esterase; alpha 29.8 2.8E+02 0.0095 24.9 9.2 87 68-157 426-527 (587)
14 4gos_A V-SET domain-containing 28.0 75 0.0026 22.2 4.2 24 25-48 21-46 (125)
15 4frw_A Poliovirus receptor-rel 24.6 1.8E+02 0.0061 20.2 10.5 81 25-124 134-214 (218)
16 4fom_A Poliovirus receptor-rel 23.2 2.5E+02 0.0084 21.3 8.3 29 91-121 180-208 (308)
17 2vo8_A EXO-alpha-sialidase; hy 22.6 2.9E+02 0.0098 21.8 7.9 82 76-165 24-125 (143)
18 3b7y_A E3 ubiquitin-protein li 21.9 2.2E+02 0.0074 20.2 6.0 59 97-155 87-150 (153)
19 1iam_A ICAM-1, CD54, intercell 20.4 1.6E+02 0.0054 22.9 5.1 30 25-54 102-133 (185)
20 2le3_A Carnitine O-palmitoyltr 20.2 72 0.0025 20.4 2.5 19 15-33 7-25 (42)
21 3qhz_H Human monoclonal antibo 20.2 2.1E+02 0.0073 21.1 5.6 24 25-48 148-172 (232)
No 1
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=63.96 E-value=43 Score=24.98 Aligned_cols=89 Identities=8% Similarity=0.115 Sum_probs=43.8
Q ss_pred eeEEEEEcC-CccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCC-cceeEEEEEecCCCCccccccceEEEE
Q psy6412 25 HQLILESTS-KWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVP-ENKTISVTLFKDPRNHELEDKEWTFII 102 (181)
Q Consensus 25 ~eL~le~t~-kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~P-en~~i~vTLykd~~~~~fEdKEWtfvi 102 (181)
+++.|.|.- .+.|.-+.|.|.+-+...... ..+.+...-..+-+.+ ....+..+|.-.+ ..+-+...|+.++
T Consensus 134 ~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~~d~g~YtC~a 207 (248)
T 3pv7_A 134 NEDKYMCESSGFYPEAINITWEKQTQKFPHP-----IEISEDVITGPTIKNMDGTFNVTSCLKLNS-SQEDPGTVYQCVV 207 (248)
T ss_dssp --CEEEEEEEEEBSSCCEEEEEEECSSSCSC-----EEECTTEEEEEEEECTTSCEEEEEEEECC---CCCTTCEEEEEE
T ss_pred CCcEEEEEEccEECCCeEEEEEECCccCCCc-----cccccceeecccEECCCCCEEEEEEEEEcC-ccccCCCEEEEEE
Confidence 456688884 457888899999876432210 0000111101111222 2233334443222 2222335899999
Q ss_pred eeccCCCCcceeEEeeecc
Q psy6412 103 EDISSGGKRRPLATAVLNM 121 (181)
Q Consensus 103 E~~~~~GkRk~LAs~~iNm 121 (181)
+| +.|....-+++.+++
T Consensus 208 ~n--~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 208 RH--ASLHTPLRSNFTLTA 224 (248)
T ss_dssp EC--TTCSSCEEEEECC--
T ss_pred EC--CCCCCCcEEEEEEEE
Confidence 99 566666777778877
No 2
>3eoj_A Bacteriochlorophyll A protein; excitation energy transfer, beta sheet, gamma-turns, chromophore, electron transport, magnesium; HET: BCL; 1.30A {Prosthecochloris aestuarii 2K} SCOP: b.75.1.1 PDB: 4bcl_A* 3oeg_A* 3vdi_A* 1m50_A* 3eni_A* 1ksa_A* 3bsd_A*
Probab=61.59 E-value=19 Score=31.93 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=41.9
Q ss_pred cceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeeccc--ceeee
Q psy6412 96 KEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCT--KKIVS 147 (181)
Q Consensus 96 KEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S--~Ki~~ 147 (181)
-+|.+++|. .+++=-++=|.+.||+.--.-+.|+.-++||+.||+- +-++.
T Consensus 13 ~dYeiiLeg-gsSswg~vk~rAkvNvP~A~pLlpadcniKi~aKpld~~kgvVR 65 (366)
T 3eoj_A 13 SDYEIILEG-GSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVR 65 (366)
T ss_dssp EEEEEEECC-TTCCCEEEEEEEEECSCCSCSSSSEEEEEEEEEEECTTSTTCEE
T ss_pred CCceEEEcc-CCCccceeeeEEeecCCCCCCCCCcccceEeeeeecCccCCeEE
Confidence 368899998 6677778888999999877777899999999999998 44443
No 3
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.44 E-value=53 Score=23.06 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=38.2
Q ss_pred cceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeee-EeeecccceeeeeEEeeeee
Q psy6412 96 KEWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMN-LEFKPCTKKIVSATLDLTLS 155 (181)
Q Consensus 96 KEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~-L~lkP~S~Ki~~AsL~ltls 155 (181)
..=.|.|-|....|+-..|+.+.|++............+. +.|.....+-..++|.|.|+
T Consensus 70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~ 130 (140)
T 2dmh_A 70 SSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIG 130 (140)
T ss_dssp CEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEE
Confidence 3445555565666788899999999998875554444444 33544444445577776664
No 4
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=50.81 E-value=11 Score=31.18 Aligned_cols=62 Identities=19% Similarity=0.382 Sum_probs=41.2
Q ss_pred CcceEEEee-----CCcceeEEEEEec------CCCCccccccceE-----EEEeecc------CCCCcceeEEeeeccc
Q psy6412 65 PLRGVVVWA-----VPENKTISVTLFK------DPRNHELEDKEWT-----FIIEDIS------SGGKRRPLATAVLNMN 122 (181)
Q Consensus 65 P~rG~vvW~-----~Pen~~i~vTLyk------d~~~~~fEdKEWt-----fviE~~~------~~GkRk~LAs~~iNm~ 122 (181)
-|||+-.|+ .|+|+-+.++-+. |+.+++|+.+.=+ ++.++.+ .-.++|.+=--+++=.
T Consensus 62 Ryr~m~iW~~a~dd~p~NH~vVl~kk~g~eyVfDlTAhQF~n~g~s~l~gPiI~te~~W~~ryq~a~~~KlV~YkDF~~~ 141 (186)
T 4g29_A 62 RYRGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNS 141 (186)
T ss_dssp EEEEEEEESSTTCSSCEEEEEEEEEETTEEEEEETTGGGGTTTTCTTCCSCEEEEHHHHHHHHHHC---CEEEEEEESSH
T ss_pred eeeeEEeccCccccCccceEEEEEeecCceEEEcccHHHHHhcCCccCCCcccccHHHHHHHHHHHHhhceEEeecccCc
Confidence 478999998 8999999988776 8999999987754 4444421 2335566655555555
Q ss_pred cccC
Q psy6412 123 KYAS 126 (181)
Q Consensus 123 ~fas 126 (181)
.+|+
T Consensus 142 ~~A~ 145 (186)
T 4g29_A 142 SIAA 145 (186)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5553
No 5
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=45.01 E-value=77 Score=22.18 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=37.9
Q ss_pred ceeEEEEEcCCccCCee-EEEEEeeceee-ecCCcccccC----CCCC-cceEEEeeCCcceeEEEEEecCC-----CCc
Q psy6412 24 FHQLILESTSKWTPSKL-SIVWTRRSRRV-VTEPMLWEPT----MTDP-LRGVVVWAVPENKTISVTLFKDP-----RNH 91 (181)
Q Consensus 24 ~~eL~le~t~kW~P~kl-~Vvw~RR~Rr~-~sk~~sW~p~----i~nP-~rG~vvW~~Pen~~i~vTLykd~-----~~~ 91 (181)
=+.+.|.|.. -|..+ .+.|.|..... ..+.+++.++ +..| |+|+. ++|.|. +..
T Consensus 15 G~~v~L~~~~--~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~------------~~~~ngSL~I~nvt 80 (111)
T 2qsq_A 15 GKEVLLLVHN--LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE------------IIYPNASLLIQNII 80 (111)
T ss_dssp TSCEEEEEES--CCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCE------------EECTTSCEEECSCC
T ss_pred CCCEEEEEeC--CCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcE------------EEecCCcEEEccCc
Confidence 3567888975 45555 48998764322 1245555554 3333 66755 455433 333
Q ss_pred cccccceEEEEee
Q psy6412 92 ELEDKEWTFIIED 104 (181)
Q Consensus 92 ~fEdKEWtfviE~ 104 (181)
.=+...||+.+.+
T Consensus 81 ~~D~G~Ytc~v~~ 93 (111)
T 2qsq_A 81 QNDAGFYTLHVIK 93 (111)
T ss_dssp GGGCEEEEEEEEE
T ss_pred ccCCeEEEEEEEe
Confidence 3444568888777
No 6
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=43.03 E-value=40 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=19.9
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeece
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRSR 49 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~R 49 (181)
+.+.|.|. ..|.|..+.|.|.+.+.
T Consensus 140 ~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 140 SMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 56889998 45689888999987654
No 7
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=40.66 E-value=67 Score=22.68 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=31.8
Q ss_pred ceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeec
Q psy6412 97 EWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKP 140 (181)
Q Consensus 97 EWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP 140 (181)
.=.|.|-|...-|+-..|+.+.|++...........+.-+.|+|
T Consensus 78 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 121 (136)
T 1gmi_A 78 KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP 121 (136)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC
Confidence 34455555556788889999999999888654444567777777
No 8
>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous scattering phasing, structural genomics, PSI; 1.50A {Pseudomonas aeruginosa} SCOP: b.18.1.16 PDB: 1oko_A* 1uoj_A 2vxj_A* 2wyf_A* 3zyh_A* 3zyb_A* 3zyf_A*
Probab=40.43 E-value=46 Score=25.66 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=31.5
Q ss_pred ceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 67 RGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 67 rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
.|+.-|.+|.|+|=.+||+=....++|-|--=.|.+|
T Consensus 79 ngvlhktvP~~vdGelillf~D~pg~y~dNSgeF~V~ 115 (121)
T 1l7l_A 79 TGLFRWVAPNNVQGAITLIYNDVPGTYGNNSGSFSVN 115 (121)
T ss_dssp TEEEEECCCTTCCEEEEEEECCCTTCGGGCEEEEEEE
T ss_pred CcEEEeecCCCcCceEEEEEeCCCCcccCCCccEEEE
Confidence 5788999999999999998888888898877777655
No 9
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=36.88 E-value=93 Score=23.76 Aligned_cols=77 Identities=10% Similarity=0.154 Sum_probs=41.8
Q ss_pred eeEEEEEcCCccCCeeEEEEEeeceeeecCCccccc----CCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEE
Q psy6412 25 HQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWEP----TMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTF 100 (181)
Q Consensus 25 ~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p----~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtf 100 (181)
+.+.|+|.-.--+....|.|.|-+...........| .+..+|+|.+.......-+.++++. +...=+...|++
T Consensus 15 ~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~---~v~~~D~G~Y~C 91 (308)
T 4fom_A 15 KNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLH---NIGFSDSGKYIC 91 (308)
T ss_dssp SCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEEC---SCCGGGCEEEEE
T ss_pred CcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEc---cCCHHHCEEEEE
Confidence 568899975445556679999865433222222222 2455677777665332222233332 222234567888
Q ss_pred EEee
Q psy6412 101 IIED 104 (181)
Q Consensus 101 viE~ 104 (181)
.+.+
T Consensus 92 ~a~n 95 (308)
T 4fom_A 92 KAVT 95 (308)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8877
No 10
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=36.28 E-value=42 Score=26.29 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCCc-ceEEEeeCC------cceeEEEEEecCCCCccccccceEEEEee
Q psy6412 62 MTDPL-RGVVVWAVP------ENKTISVTLFKDPRNHELEDKEWTFIIED 104 (181)
Q Consensus 62 i~nP~-rG~vvW~~P------en~~i~vTLykd~~~~~fEdKEWtfviE~ 104 (181)
|+.-| =.+-+||+| |++||-.+|=|. +.|++-.+++--=.
T Consensus 7 VQQ~YpF~v~tmPV~k~I~~GeTvEIR~~L~re---G~f~~t~Y~IRYFQ 53 (130)
T 2l3b_A 7 IQQSYPFSIETMPVPKKLKVGETAEIRCQLHRD---GRFEETKYFIRYFQ 53 (130)
T ss_dssp CCCCCCCEEEECCCCSSCCTTCEEEEEEEEECS---SCCSSCCCEEEEEC
T ss_pred eeecCCceEEEeccccccCCCCeEEEEEEEecC---ceecccEEEEEEEe
Confidence 33444 245689988 889999999874 56999999987655
No 11
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=35.82 E-value=87 Score=23.27 Aligned_cols=27 Identities=7% Similarity=0.401 Sum_probs=20.6
Q ss_pred eeEEEEEc-CCccCCeeEEEEEe-eceee
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTR-RSRRV 51 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~R-R~Rr~ 51 (181)
+.+.|.|. ..|.|..+.|.|.+ .+..+
T Consensus 142 ~~v~L~C~~~g~~P~p~~v~W~~~~g~~l 170 (223)
T 1dee_B 142 STVAVGCLAQDFLPDSITFSWKYKNNSDI 170 (223)
T ss_dssp SEEEEEEEEEEEBSSCCEEEEEETTSCBC
T ss_pred CcEEEEEEEEEEeCCCeEEEeEccCCCcc
Confidence 46899999 46779888999999 54443
No 12
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=35.74 E-value=38 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.8
Q ss_pred eEEEeeCC------cceeEEEEEecCCCCccccccceEEEEee
Q psy6412 68 GVVVWAVP------ENKTISVTLFKDPRNHELEDKEWTFIIED 104 (181)
Q Consensus 68 G~vvW~~P------en~~i~vTLykd~~~~~fEdKEWtfviE~ 104 (181)
.+-+||+| |++||-.+|-|+ +.|++-.+++--=.
T Consensus 13 ~v~tmPV~k~I~~GeTvEIR~~L~re---G~f~~t~Y~IRYFQ 52 (124)
T 2l7q_A 13 TVESMPVADEIAGDETVEIRLEIKPS---GNFIGTVYTLRYFQ 52 (124)
T ss_dssp EEEECCCCSCCCSSEEEEEEEEEEEC---CCCSCCCCEEEEEC
T ss_pred eEEEeccccccCCCCeEEEEEEEecC---ceecccEEEEEEEe
Confidence 45689988 889999999975 55999999986554
No 13
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A
Probab=29.83 E-value=2.8e+02 Score=24.89 Aligned_cols=87 Identities=13% Similarity=0.279 Sum_probs=64.7
Q ss_pred eEEEee-CC--cceeE----EEEEecCCCCccccccceEEEEeeccCCCCcceeEEeeeccccccCC------CC-ccee
Q psy6412 68 GVVVWA-VP--ENKTI----SVTLFKDPRNHELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASV------DS-TQHQ 133 (181)
Q Consensus 68 G~vvW~-~P--en~~i----~vTLykd~~~~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~------~~-~q~~ 133 (181)
...+|. .| |.++| .+.||=-... .|-+|+..|.||.+.|+...|..+-+|++.-.+. +| ...+
T Consensus 426 d~l~f~t~pl~~~~~i~G~~~~~L~vss~~---~d~d~~v~L~dV~pdG~~~~vt~g~lr~~~r~~~~~~~~l~pg~~~~ 502 (587)
T 3i2k_A 426 DVLCYSTEVLTDPVEVTGTVSARLFVSSSA---VDTDFTAKLVDVFPDGRAIALCDGIVRMRYRETLVNPTLIEAGEIYE 502 (587)
T ss_dssp TCEEEECCCCSSCEEEEEEEEEEEEEEESS---SSCEEEEEEEEECTTSCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEE
T ss_pred CEEEEeCCCCCCCEEEEeeEEEEEEEEeCC---CcEEEEEEEEEECCCCcEEEeeeeeeeccccccccccccCCCCCEEE
Confidence 356776 33 66654 4667754432 5778999999999999999999999999765532 22 4568
Q ss_pred eeEeeecccceeeee-EEeeeeeEE
Q psy6412 134 MNLEFKPCTKKIVSA-TLDLTLSCV 157 (181)
Q Consensus 134 l~L~lkP~S~Ki~~A-sL~ltlscv 157 (181)
++|.|-|++-.+..- +|.|.|++.
T Consensus 503 v~i~L~~~~~~f~~Ghrlrl~i~ss 527 (587)
T 3i2k_A 503 VAIDMLATSNVFLPGHRIMVQVSSS 527 (587)
T ss_dssp EEEEEEEEEEEECTTCEEEEEEESC
T ss_pred EEEEehhheeEECCCCEEEEEEECC
Confidence 889999988887654 688888776
No 14
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=27.99 E-value=75 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=17.1
Q ss_pred eeEEEEEc--CCccCCeeEEEEEeec
Q psy6412 25 HQLILEST--SKWTPSKLSIVWTRRS 48 (181)
Q Consensus 25 ~eL~le~t--~kW~P~kl~Vvw~RR~ 48 (181)
+.+.|.|+ ..-.|..+.|.|.|.+
T Consensus 21 ~~v~L~C~~~~~~~~~~~~V~W~k~~ 46 (125)
T 4gos_A 21 EDGILSCTFEPDIKLSDIVIQWLKEG 46 (125)
T ss_dssp SCEEEEEEECCCSCGGGCEEEEEETT
T ss_pred CCEEEEEEEcCCcccCcEEEEEEEec
Confidence 45789997 3445667899998753
No 15
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=24.59 E-value=1.8e+02 Score=20.15 Aligned_cols=81 Identities=11% Similarity=0.233 Sum_probs=46.0
Q ss_pred eeEEEEEcCCccCCeeEEEEEeeceeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEee
Q psy6412 25 HQLILESTSKWTPSKLSIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIED 104 (181)
Q Consensus 25 ~eL~le~t~kW~P~kl~Vvw~RR~Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE~ 104 (181)
+.+.+.|.....|. ..|.|.+-.....+... ..........-+|.= .....-+.+.|+.++.|
T Consensus 134 ~~~~~~c~~~g~p~-p~i~W~~~~~~~~~~~~---------------~~~~~~~~~~s~L~i-~~~~~~d~g~YtC~a~N 196 (218)
T 4frw_A 134 LTLAASCTAEGSPA-PSVTWDTEVKGTTSSRS---------------FKHSRSAAVTSEFHL-VPSRSMNGQPLTCVVSH 196 (218)
T ss_dssp SEEEEEEEEEEBSC-CEEEEEESSCCEEEEEE---------------EECSSSEEEEEEEEE-CCCGGGTTCEEEEEEEC
T ss_pred cccceeeeccCCcC-ceEEEEECCcccccCce---------------EecCCcEEEEEEEEE-eeCCHHhCeEEEEEEEe
Confidence 45677777666665 57888876543322110 011122222223322 22233345789999999
Q ss_pred ccCCCCcceeEEeeeccccc
Q psy6412 105 ISSGGKRRPLATAVLNMNKY 124 (181)
Q Consensus 105 ~~~~GkRk~LAs~~iNm~~f 124 (181)
+.|....-++..||+..+
T Consensus 197 --~~g~~~~~~t~~v~V~~~ 214 (218)
T 4frw_A 197 --PGLLQDQRITHILHVSHH 214 (218)
T ss_dssp --TTCSSCEEEEEECCEECC
T ss_pred --CCCCeEEEEEEEEEECcC
Confidence 677777778888888765
No 16
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=23.24 E-value=2.5e+02 Score=21.32 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=18.7
Q ss_pred ccccccceEEEEeeccCCCCcceeEEeeecc
Q psy6412 91 HELEDKEWTFIIEDISSGGKRRPLATAVLNM 121 (181)
Q Consensus 91 ~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm 121 (181)
..-+..+|++.++| ..|....-+++.+++
T Consensus 180 ~~~d~g~Y~C~a~n--~~~~~~~~~~~~l~V 208 (308)
T 4fom_A 180 RFARGRRITCVVKH--PALEKDIRYSFILDI 208 (308)
T ss_dssp GGGTTCEEEEEEEC--TTCSSCEEEEEECCC
T ss_pred eecCCccEEEEEEc--cCCCCceEEeEEEEE
Confidence 34456789999999 445544555566655
No 17
>2vo8_A EXO-alpha-sialidase; hydrolase, cohesin, high affinity, glycoside hydrolase; 1.7A {Clostridium perfringens} SCOP: b.2.2.2
Probab=22.61 E-value=2.9e+02 Score=21.84 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=54.0
Q ss_pred cceeEEEEEecCCCCccccccceEEE-------Eeecc-------------CCCCcceeEEeeeccccccCCCCcceeee
Q psy6412 76 ENKTISVTLFKDPRNHELEDKEWTFI-------IEDIS-------------SGGKRRPLATAVLNMNKYASVDSTQHQMN 135 (181)
Q Consensus 76 en~~i~vTLykd~~~~~fEdKEWtfv-------iE~~~-------------~~GkRk~LAs~~iNm~~fas~~~~q~~l~ 135 (181)
+|.|+.++|=+-....+--.-||||- +++++ .-||-|+||+.-=| ..+|..--++
T Consensus 24 ~~Fdv~~Gl~~v~e~~~vYAqd~TlnYd~a~f~l~eitS~~d~~~V~~KE~ePGkVRIl~ASlG~-----~i~~~~dL~k 98 (143)
T 2vo8_A 24 SAFEAILGIEGLNGDTEVYSAEYLFEYNAEAFILNEITSFNDSLFVKSKEVEPGKVRILVASLGN-----EIEKDSDLVK 98 (143)
T ss_dssp CCEEEEEEEESCCTTCCEEEEEEEEECCTTTEEEEEEEESSTTEEEEEEEEETTEEEEEEEESSS-----CBCTTCEEEE
T ss_pred ccEEEEechhHhhhhhhhhhhhheeccChhhEEEEEeeecccceEEeecccCCCeEEEEEhhcCC-----CCCCcccEEE
Confidence 67777777766553333334566642 33332 26888888887633 5566667789
Q ss_pred EeeecccceeeeeEEeeeeeEEEeecCccc
Q psy6412 136 LEFKPCTKKIVSATLDLTLSCVFLREGKAT 165 (181)
Q Consensus 136 L~lkP~S~Ki~~AsL~ltlscv~lrEGkAT 165 (181)
++|+|-|.-=.+ .+.+..++|..|..-
T Consensus 99 ~~lt~Ks~se~~---~~svtn~~igdG~G~ 125 (143)
T 2vo8_A 99 VNLTPKISSELE---VLGLTTALVGAGDGN 125 (143)
T ss_dssp EEEEECSCEEEE---EEEEEEEEEEETTSC
T ss_pred EEEEeeccceee---EEEeEEEEEecCCCc
Confidence 999987764333 788889999988753
No 18
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=21.94 E-value=2.2e+02 Score=20.16 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred ceEEEEeeccCCCCcceeEEeeeccccccCCCCc----ceeeeEeeeccc-ceeeeeEEeeeee
Q psy6412 97 EWTFIIEDISSGGKRRPLATAVLNMNKYASVDST----QHQMNLEFKPCT-KKIVSATLDLTLS 155 (181)
Q Consensus 97 EWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~----q~~l~L~lkP~S-~Ki~~AsL~ltls 155 (181)
.=.|.|=|....|+-..|+.+.|++......... ..+.-+.|.|.+ ..-...+|.|.|+
T Consensus 87 ~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~ 150 (153)
T 3b7y_A 87 RLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150 (153)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEE
T ss_pred EEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEE
Confidence 3345555556668888999999999988754432 112344555543 2234455555543
No 19
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=20.37 E-value=1.6e+02 Score=22.89 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.3
Q ss_pred eeEEEEEc--CCccCCeeEEEEEeeceeeecC
Q psy6412 25 HQLILEST--SKWTPSKLSIVWTRRSRRVVTE 54 (181)
Q Consensus 25 ~eL~le~t--~kW~P~kl~Vvw~RR~Rr~~sk 54 (181)
+++.|.|+ +..=+..|.|.|.|.++.+.++
T Consensus 102 ~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~ 133 (185)
T 1iam_A 102 KQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE 133 (185)
T ss_dssp SEEEEEEEEECCBCGGGEEEEEEETTEEEEEE
T ss_pred CcEEEEEEcCCccCCCCcEEEEEeCCEEcccc
Confidence 46778888 3444456999999998887765
No 20
>2le3_A Carnitine O-palmitoyltransferase 1, liver isoform; membrane protein, amphiphilic structure, membrane-protein interaction, structural switch; NMR {Homo sapiens}
Probab=20.25 E-value=72 Score=20.42 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.3
Q ss_pred eeeeEEEEEceeEEEEEcC
Q psy6412 15 AAKFQFTASFHQLILESTS 33 (181)
Q Consensus 15 AaKf~Ftas~~eL~le~t~ 33 (181)
|.-|||++|-+-+++.++.
T Consensus 7 AVaf~ftvt~eG~~~~~~~ 25 (42)
T 2le3_A 7 AVAFQFTVTPDGIDLRLSH 25 (42)
T ss_dssp HCSEEEEEETTEEEEEECH
T ss_pred hheeeeeecCCCccccccH
Confidence 4559999999999999874
No 21
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=20.15 E-value=2.1e+02 Score=21.07 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=19.1
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeec
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRS 48 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~ 48 (181)
+.+.|.|. ..|-|..+.|.|.+..
T Consensus 148 ~~v~L~C~~~~~~P~~~~v~W~~~g 172 (232)
T 3qhz_H 148 GTAALGCLVKDYFPEPVTVSWNSGA 172 (232)
T ss_dssp CEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CcEEEEEEEeeEeCCCeEEEEEECC
Confidence 56889998 5678888999998754
Done!