Query psy6412
Match_columns 181
No_of_seqs 53 out of 55
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 17:22:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4bcla_ b.75.1.1 (A:) Bacterio 73.1 3.8 0.00028 34.2 6.7 50 97-147 7-58 (359)
2 d1ju3a1 b.18.1.13 (A:352-574) 61.4 12 0.00085 27.9 6.9 87 68-157 75-176 (223)
3 d1gmia_ b.7.1.1 (A:) Domain fr 38.2 52 0.0038 22.0 10.3 38 106-143 87-124 (136)
4 d1pkoa_ b.1.1.1 (A:) Myelin ol 36.2 41 0.003 21.2 5.7 24 25-48 18-43 (126)
5 d1nh2d2 b.56.1.1 (D:55-121) Sm 34.8 8 0.00058 25.5 1.6 15 92-106 16-30 (67)
6 d1iama1 b.1.1.3 (A:83-185) Int 30.3 48 0.0035 21.2 5.2 29 25-53 20-50 (103)
7 d1j7db_ d.20.1.1 (B:) Ubiquiti 26.4 45 0.0033 23.2 4.8 42 62-103 15-56 (149)
8 d1jata_ d.20.1.1 (A:) Ubiquiti 25.6 39 0.0029 23.7 4.3 52 49-103 6-57 (152)
9 d1hyrc1 b.1.1.2 (C:181-274) Cl 25.5 31 0.0022 22.1 3.4 33 25-57 16-49 (94)
10 d1z3da1 d.20.1.1 (A:2-150) Ubi 24.2 48 0.0035 23.0 4.6 40 63-103 17-57 (149)
11 d1l7la_ b.18.1.16 (A:) PA-IL, 23.4 64 0.0047 22.8 5.0 37 67-103 79-115 (121)
12 d2fo3a1 d.20.1.1 (A:9-117) Put 23.3 46 0.0034 22.1 4.1 40 63-103 12-52 (109)
13 d1sy6a1 b.1.1.4 (A:1-81) CD3 g 23.2 99 0.0072 20.5 5.9 46 26-76 19-69 (81)
14 d2mhaa1 b.1.1.2 (A:182-270) Cl 22.6 45 0.0033 21.1 3.8 32 23-54 14-46 (89)
15 d1rlwa_ b.7.1.1 (A:) Domain fr 22.3 92 0.0067 19.8 8.5 34 108-143 81-114 (126)
16 d1yrva1 d.20.1.1 (A:1-148) Ubi 20.8 45 0.0033 23.4 3.8 41 63-103 18-58 (148)
No 1
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Probab=73.10 E-value=3.8 Score=34.21 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=40.9
Q ss_pred ceEEEEeeccCCCCcceeEEeeeccccccCCCCcceeeeEeeecc--cceeee
Q psy6412 97 EWTFIIEDISSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPC--TKKIVS 147 (181)
Q Consensus 97 EWtfviE~~~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~--S~Ki~~ 147 (181)
|+.+++|. .+++=-++=|.+.||+.--.-+.|+.-++||+.||+ .+-++.
T Consensus 7 Dyeiileg-gssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR 58 (359)
T d4bcla_ 7 DYEIILEG-GSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVR 58 (359)
T ss_dssp EEEEEECC-TTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEE
T ss_pred ceEEEEcC-CCcccceeeeeEeecCCCCCCCcccccceEeeeeecCCcCCeEE
Confidence 67899998 778888888999999988777789999999999999 555543
No 2
>d1ju3a1 b.18.1.13 (A:352-574) Bacterial cocaine esterase, C-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}
Probab=61.40 E-value=12 Score=27.91 Aligned_cols=87 Identities=13% Similarity=0.254 Sum_probs=61.6
Q ss_pred eEEEeeC-C--cceeE----EEEEecCCCCccccccceEEEEeeccCCCCcceeEEeeeccccccCCC-------Cccee
Q psy6412 68 GVVVWAV-P--ENKTI----SVTLFKDPRNHELEDKEWTFIIEDISSGGKRRPLATAVLNMNKYASVD-------STQHQ 133 (181)
Q Consensus 68 G~vvW~~-P--en~~i----~vTLykd~~~~~fEdKEWtfviE~~~~~GkRk~LAs~~iNm~~fas~~-------~~q~~ 133 (181)
+.++|.. | +.++| .+.||-... -.|-+|...++++.+.|+...|+.+-+++....+.. ....+
T Consensus 75 ~~l~f~s~pl~~d~~i~G~~~l~L~vs~~---~~d~~l~v~l~dv~pdG~~~~it~G~l~~~~r~~~~~~~~~~pg~~~~ 151 (223)
T d1ju3a1 75 DVLCYSTEVLTDPVEVTGTVSARLFVSSS---AVDTDFTAKLVDVFPDGRAIALCDGIVRMRYRETLVNPTLIEAGEIYE 151 (223)
T ss_dssp TCEEEECCCCSSCEEEEEEEEEEEEEEES---SSSCEEEEEEEEECTTSCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEE
T ss_pred ceeeeeceecCCCEEEEeeeEEEEEEEcc---CCCcEEEEEEEEECCCCcEEEeccCceeeccccCcccccccCCCCEEE
Confidence 4677863 2 66664 466665432 347889999999999999999999999997655422 24567
Q ss_pred eeEeeecccceeee-eEEeeeeeEE
Q psy6412 134 MNLEFKPCTKKIVS-ATLDLTLSCV 157 (181)
Q Consensus 134 l~L~lkP~S~Ki~~-AsL~ltlscv 157 (181)
++|.|-|++.-+.. -+|.|.|++.
T Consensus 152 l~i~l~p~~~~~~~GhrLrl~I~~~ 176 (223)
T d1ju3a1 152 VAIDMLATSNVFLPGHRIMVQVSSS 176 (223)
T ss_dssp EEEEEEEEEEEECTTCEEEEEEESC
T ss_pred EEEEecceeEEECCCCEEEEEEECC
Confidence 77777777776665 4666666653
No 3
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}
Probab=38.16 E-value=52 Score=22.02 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.5
Q ss_pred cCCCCcceeEEeeeccccccCCCCcceeeeEeeecccc
Q psy6412 106 SSGGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTK 143 (181)
Q Consensus 106 ~~~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~ 143 (181)
..-|+-..|+.+.|++++.....+...+.-+.|.|..+
T Consensus 87 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~G~ 124 (136)
T d1gmia_ 87 APIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGK 124 (136)
T ss_dssp CSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSSCE
T ss_pred cCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCCcE
Confidence 34567789999999999988766666777788888643
No 4
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.15 E-value=41 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=17.4
Q ss_pred eeEEEEEc--CCccCCeeEEEEEeec
Q psy6412 25 HQLILEST--SKWTPSKLSIVWTRRS 48 (181)
Q Consensus 25 ~eL~le~t--~kW~P~kl~Vvw~RR~ 48 (181)
+.+.|.|+ ..-.+..+.|.|.|.+
T Consensus 18 ~~v~L~C~~~~~~~~~~~~v~W~~~~ 43 (126)
T d1pkoa_ 18 DEAELPCRISPGKNATGMEVGWYRSP 43 (126)
T ss_dssp SCEEEEEEEESCCCCTTSEEEEEEC-
T ss_pred CcEEEEEEEECcCCCCceEEEEeecC
Confidence 35778886 4566788899998754
No 5
>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.83 E-value=8 Score=25.54 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=12.8
Q ss_pred cccccceEEEEeecc
Q psy6412 92 ELEDKEWTFIIEDIS 106 (181)
Q Consensus 92 ~fEdKEWtfviE~~~ 106 (181)
.|=|-=|||+|+|++
T Consensus 16 RFCDnVWTFiiknv~ 30 (67)
T d1nh2d2 16 GFCDDVWTFIVKNCQ 30 (67)
T ss_dssp EEETTEEEEEEEEEE
T ss_pred eccccEEEEEEeeeE
Confidence 388899999999964
No 6
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.29 E-value=48 Score=21.16 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=22.7
Q ss_pred eeEEEEEcC-CccC-CeeEEEEEeeceeeec
Q psy6412 25 HQLILESTS-KWTP-SKLSIVWTRRSRRVVT 53 (181)
Q Consensus 25 ~eL~le~t~-kW~P-~kl~Vvw~RR~Rr~~s 53 (181)
+++.|+|.- .-.| ..+.|.|.+.++.+..
T Consensus 20 ~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~ 50 (103)
T d1iama1 20 KQLTLRCQVEGGAPRAQLTVVLLRGEKELKR 50 (103)
T ss_dssp SEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred CEEEEEEEecCCCCCCceEEEEccccccccc
Confidence 678999984 4677 5689999998877644
No 7
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}
Probab=26.39 E-value=45 Score=23.22 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 62 MTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 62 i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
.+||..|..+-|.++|+..--.++..|...-|+..-+.|.|.
T Consensus 15 ~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~ 56 (149)
T d1j7db_ 15 LAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELF 56 (149)
T ss_dssp TTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEE
T ss_pred HhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEe
Confidence 367888998888876665533344457777788888887765
No 8
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=25.63 E-value=39 Score=23.72 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=37.1
Q ss_pred eeeecCCcccccCCCCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 49 RRVVTEPMLWEPTMTDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 49 Rr~~sk~~sW~p~i~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
||+..+...++ +||..|..+.|.++|+.--..+...|...-||+.-+.|.|+
T Consensus 6 rRl~~E~~~l~---~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~ 57 (152)
T d1jata_ 6 KRIIKETEKLV---SDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELY 57 (152)
T ss_dssp HHHHHHHHHHH---HSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEE
T ss_pred HHHHHHHHHHH---hCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEe
Confidence 44444444554 57888999999888776665555568888899988887765
No 9
>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}
Probab=25.46 E-value=31 Score=22.08 Aligned_cols=33 Identities=9% Similarity=0.317 Sum_probs=26.2
Q ss_pred eeEEEEEc-CCccCCeeEEEEEeeceeeecCCcc
Q psy6412 25 HQLILEST-SKWTPSKLSIVWTRRSRRVVTEPML 57 (181)
Q Consensus 25 ~eL~le~t-~kW~P~kl~Vvw~RR~Rr~~sk~~s 57 (181)
.++.|.|. ...-|+.+.|-|.+.+....+....
T Consensus 16 ~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~ 49 (94)
T d1hyrc1 16 GNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQ 49 (94)
T ss_dssp SEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSE
T ss_pred CCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEE
Confidence 46788888 7899999999999987776654433
No 10
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}
Probab=24.23 E-value=48 Score=22.97 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.2
Q ss_pred CCCcceEEEeeCCcceeEE-EEEecCCCCccccccceEEEEe
Q psy6412 63 TDPLRGVVVWAVPENKTIS-VTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 63 ~nP~rG~vvW~~Pen~~i~-vTLykd~~~~~fEdKEWtfviE 103 (181)
+||..|..+.|.++|+..- ++++ .|...-||..-+.|.|+
T Consensus 17 ~~~~~gi~~~p~~~n~~~w~~~i~-gp~~tpy~gg~f~~~i~ 57 (149)
T d1z3da1 17 EDPPAGVSGAPTEDNILTWEAIIF-GPQETPFEDGTFKLSLE 57 (149)
T ss_dssp HSCCTTEEEEEETTEEEEEEEEEE-CCTTSTTTTCEEEEEEE
T ss_pred hCCCCCEEEEECCCchhhhceeEE-CCCCccccCCEEEEEEE
Confidence 5788899999988887544 4454 57777899988888775
No 11
>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.38 E-value=64 Score=22.81 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=29.6
Q ss_pred ceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 67 RGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 67 rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
.|+.-|.+|.|++=.+||.-..-.+.|-|--=.|.+|
T Consensus 79 ~Gv~~~~~P~~V~G~l~Ll~NDvPgtyGdNSg~F~V~ 115 (121)
T d1l7la_ 79 TGLFRWVAPNNVQGAITLIYNDVPGTYGNNSGSFSVN 115 (121)
T ss_dssp TEEEEECCCTTCCEEEEEEECCCTTCGGGCEEEEEEE
T ss_pred CcEEEEecCCccCceEEEEEcCCCccccCCCCcEEEe
Confidence 5788999999999998886666667788877777765
No 12
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Probab=23.26 E-value=46 Score=22.12 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=25.3
Q ss_pred CCCcceEEEeeCCccee-EEEEEecCCCCccccccceEEEEe
Q psy6412 63 TDPLRGVVVWAVPENKT-ISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 63 ~nP~rG~vvW~~Pen~~-i~vTLykd~~~~~fEdKEWtfviE 103 (181)
+||..|..+.+..+|+. ..+++. .|...-||+.-+.+.|.
T Consensus 12 ~~~~~g~~~~~~~~~~~~w~~~i~-gp~~tpy~gg~f~~~i~ 52 (109)
T d2fo3a1 12 NNPPINCTLDVHPNNIRIWIVKYV-GLENTIYANEVYKLKII 52 (109)
T ss_dssp HSCCTTEEEEECTTCTTEEEEEEE-CCTTSTTTTCEEEEEEE
T ss_pred hCCCCCEEEEEcCCcccEEEEEEe-cCchhhhcCCCceEEEE
Confidence 46777888888766653 445444 45555677776665544
No 13
>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.22 E-value=99 Score=20.52 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=31.0
Q ss_pred eEEEEEcCCccCCeeEEEEEeeceeee---cCCcccc--cCCCCCcceEEEeeCCc
Q psy6412 26 QLILESTSKWTPSKLSIVWTRRSRRVV---TEPMLWE--PTMTDPLRGVVVWAVPE 76 (181)
Q Consensus 26 eL~le~t~kW~P~kl~Vvw~RR~Rr~~---sk~~sW~--p~i~nP~rG~vvW~~Pe 76 (181)
.+.|+|... .-.|.|.+-...+. +....|. -.++|| ||+-.=.-++
T Consensus 19 ~V~L~Cn~~----~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DP-RG~Y~C~~~~ 69 (81)
T d1sy6a1 19 SVLLTCDAE----AKNITWFKDGKMIGFLTEDKKKWNLGSNAKDP-RGMYQCKGSQ 69 (81)
T ss_dssp EEEEEECSC----SSEEEEEETTEEEEEEESSCCCEEEEEGGGCC-EEEEEEESSS
T ss_pred eEEEEeCCC----CcEEEEecCCeEeecccCCcceeecCCcccCC-CcceEcCCCC
Confidence 578999632 22899999877655 4556676 449999 8865444343
No 14
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.57 E-value=45 Score=21.10 Aligned_cols=32 Identities=9% Similarity=0.382 Sum_probs=25.7
Q ss_pred EceeEEEEEc-CCccCCeeEEEEEeeceeeecC
Q psy6412 23 SFHQLILEST-SKWTPSKLSIVWTRRSRRVVTE 54 (181)
Q Consensus 23 s~~eL~le~t-~kW~P~kl~Vvw~RR~Rr~~sk 54 (181)
+=+++.|.|. ...-|..+.|.|.+.+..+.+.
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~ 46 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQD 46 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTT
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCC
Confidence 3467899999 7899999999999877666543
No 15
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=92 Score=19.85 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.4
Q ss_pred CCCcceeEEeeeccccccCCCCcceeeeEeeecccc
Q psy6412 108 GGKRRPLATAVLNMNKYASVDSTQHQMNLEFKPCTK 143 (181)
Q Consensus 108 ~GkRk~LAs~~iNm~~fas~~~~q~~l~L~lkP~S~ 143 (181)
.++-..|+.+.|++..+.. ....+..+.|++.+.
T Consensus 81 ~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~ 114 (126)
T d1rlwa_ 81 YVMDETLGTATFTVSSMKV--GEKKEVPFIFNQVTE 114 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCT--TCEEEEEEEETTTEE
T ss_pred CCCCCeEEEEEEEHHHccC--CCeEEEEEEccCCCe
Confidence 3455789999999988753 345567788877654
No 16
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}
Probab=20.79 E-value=45 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=27.8
Q ss_pred CCCcceEEEeeCCcceeEEEEEecCCCCccccccceEEEEe
Q psy6412 63 TDPLRGVVVWAVPENKTISVTLFKDPRNHELEDKEWTFIIE 103 (181)
Q Consensus 63 ~nP~rG~vvW~~Pen~~i~vTLykd~~~~~fEdKEWtfviE 103 (181)
+||..|..|.|..+|+..---.+..|...-||+.-+.|.|.
T Consensus 18 ~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~ 58 (148)
T d1yrva1 18 ENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIH 58 (148)
T ss_dssp HHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEE
T ss_pred HCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEE
Confidence 45667888888877765544444456666788887777664
Done!