RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6412
         (181 letters)



>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus
           niger [TaxId: 5061]}
          Length = 203

 Score = 25.5 bits (56), Expect = 3.3
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 69  VVVWAVPENKTISVTLFKDPRNHELE--DKEWTFIIEDISSGGKRRPLA 115
             V  +   ++++ T F      +L   + EW  I+ED  SG      A
Sbjct: 107 ATVENLTTGQSVTHT-FSGNVEGDLCETNAEW--IVEDFESGDSLVAFA 152


>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 185

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 41 SIVWTRRSRRVVTEPMLWEPTMTDPLRGVVVW 72
          SIVW RR  RV   P L       P+  + VW
Sbjct: 2  SIVWFRRDLRVEDNPALAAAVRAGPVIALFVW 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,717
Number of extensions: 27454
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 4
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)