BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6415
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/174 (58%), Positives = 128/174 (73%), Gaps = 19/174 (10%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDL 60
+V AGYDNGD+K+FDL+ M+L+WETN+KNGVC ++FDR+DI MNKLVAT+LE K VFD+
Sbjct: 182 VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241
Query: 61 KTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQLVSALRADTNLC 120
+T H KGFA +SEKAHK +TVW +HLPQNR+LF+T GG+G L+LW+
Sbjct: 242 RTQHPTKGFASVSEKAHK-STVWQVRHLPQNRELFLTAGGAGGLHLWKY----------- 289
Query: 121 SIFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQPINSLDWSADKLGL 174
YP QR+K D + I MGV GS++LLQ TLS+QPI+SLDWS DK GL
Sbjct: 290 -------EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL 336
>pdb|1GAK|A Chain A, Crystal Structure Of Green Abalone Sp18
Length = 141
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 40 DIPMNKLVATTLEAKL-----FVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDL 94
D M+KLV + + FVF LK ++RE+ Y + A + + KHLP N+
Sbjct: 23 DEEMHKLVKRFRDMRWNLGPGFVFLLKKVNRERMMRYCMDYARYSKKILQLKHLPVNKKT 82
Query: 95 FVTCGGSGSLNLWQLVSALRADT 117
G + ++ L AD
Sbjct: 83 LTKMGRFVGYRNYGVIRELYADV 105
>pdb|3QHY|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 271
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 5 GYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEA 53
GY+ +M D TMS ++ET L + G D RD K +AT L+A
Sbjct: 129 GYEKALRQMGDRVTMSDRFETELNEAIPG---DIRDTSTAKAIATNLKA 174
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 105 NLWQLVSALRADTNLCSIFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQP 161
N+ LV ++ T + S P T PDI MG G+L ++ EAT+ +P
Sbjct: 328 NIEDLVVHMKVVTPR-GVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 105 NLWQLVSALRADTNLCSIFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQP 161
N+ LV ++ T + S P T PDI MG G+L ++ EAT+ +P
Sbjct: 328 NIEDLVVHMKVVTPR-GVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 105 NLWQLVSALRADTNLCSIFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQP 161
N+ LV ++ T + S P T PDI MG G+L ++ EAT+ +P
Sbjct: 328 NIEDLVVHMKVVTPR-GVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 118 NLCSIFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATL 157
+ S++R S P Q DIDD+P G SL L+QE ++
Sbjct: 393 DFTSVYRMHSLLPDQLHILDIDDVP-GTNKSLPLIQEISM 431
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 28.5 bits (62), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 143 MGVPGSLTLLQEATLSSQPINSLDWSADKLGL 174
+G +L T+S+ P NS+DWS + L L
Sbjct: 288 LGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDL 319
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 84 AAKHLPQNRDLFVTCGGSGSLNLWQLVSAL 113
A++ +NRD FV GG+G L L L +AL
Sbjct: 220 ASRAYDKNRDGFVIAGGAGVLVLEDLETAL 249
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 84 AAKHLPQNRDLFVTCGGSGSLNLWQLVSAL 113
A++ +NRD FV GG+G L L L +AL
Sbjct: 237 ASRAYDKNRDGFVIAGGAGVLVLEDLETAL 266
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 70 AYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLN 105
AY +EK AT + A + +N D+ + GG G+LN
Sbjct: 60 AYATEKIGDAT-LEAERAXHENYDVLIAAGGDGTLN 94
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVC 32
+++ YDNG+ K+F ETNL VC
Sbjct: 108 LIINFYDNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVC 32
+++ YDNG+ K+F ETNL VC
Sbjct: 108 LIINFYDNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVC 32
+++ YDNG+ K+F ETNL VC
Sbjct: 108 LIINFYDNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVC 32
+++ YDNG+ K+F ETNL VC
Sbjct: 108 LIINFYDNGECKIFLPSNNFTSMETNLPQQVC 139
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVC 32
+++ YDNG+ K+F ETNL VC
Sbjct: 185 LIINFYDNGECKIFLPSNNFTSMETNLPQQVC 216
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 2 VVAGYDNGDLKMFDLKTMSLKWETNLKNG-VCGVDFDRRDIPMNKLVATTLEAKLFVFDL 60
+V+G + +K++D T+ K G V + +D R I + + ++ + V+D+
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI-----ITGSSDSTVRVWDV 200
Query: 61 KTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQLVS 111
T + E A HL N + VTC S+ +W + S
Sbjct: 201 NTGEMLNTLIHHCE---------AVLHLRFNNGMMVTCSKDRSIAVWDMAS 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,337,453
Number of Sequences: 62578
Number of extensions: 200450
Number of successful extensions: 375
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 20
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)