RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6415
(174 letters)
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 135 bits (343), Expect = 3e-39
Identities = 101/173 (58%), Positives = 127/173 (73%), Gaps = 19/173 (10%)
Query: 2 VVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDLK 61
V AGYDNGD+K+FDL+ M+L+WETN+KNGVC ++FDR+DI MNKLVAT+LE K VFD++
Sbjct: 183 VCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242
Query: 62 TLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQLVSALRADTNLCS 121
T H KGFA +SEKAHK+ TVW +HLPQNR+LF+T GG+G L+LW+
Sbjct: 243 TQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKY------------ 289
Query: 122 IFRYSSNYPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQPINSLDWSADKLGL 174
YP QR+K D + I MGV GS++LLQ TLS+QPI+SLDWS DK GL
Sbjct: 290 ------EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGL 336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 7e-06
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 29/109 (26%)
Query: 86 KHLPQNRDL----------FVTCGGSGSLNLWQLVSALR---ADTNLCSIFRYSSNYP-T 131
HLP + + V G S L+ L LR A + L S P +
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSGL-----DQSRIPFS 410
Query: 132 QRTKPDIDD--IPMGVP-GSLTLLQEAT---LSSQPINSLDWSADKLGL 174
+R K + +P+ P S LL A+ N++ ++A + +
Sbjct: 411 ER-KLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQI 457
Score = 30.0 bits (67), Expect = 0.40
Identities = 33/168 (19%), Positives = 53/168 (31%), Gaps = 57/168 (33%)
Query: 35 DFDRR-----DIPMNKLVATTLEAKLFVFDLKTLHREKGF--AYLS---------EKAHK 78
+F+ DI L AKL + TL + K Y++ +K
Sbjct: 90 EFENCYLEGNDI-------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 79 ATTVWAAKHLPQNRDLFVTCGGSGSLN--------LWQ----LVSAL--RADTNLCSIFR 124
+ A N L GG G+ + L+Q LV L + L + R
Sbjct: 143 SALFRAVGE--GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 125 YSSN----YP----------TQRTKPDID---DIPMGVPGSLTLLQEA 155
+ + + PD D IP+ P + ++Q A
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLA 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 33.6 bits (77), Expect = 0.022
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDR-RDIPM------NKLVATTLEA 53
V G DNG + ++ + W+ + + DR D+ + A
Sbjct: 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNG 249
Query: 54 KLFVFDLKT 62
L DL++
Sbjct: 250 NLTALDLRS 258
Score = 30.9 bits (70), Expect = 0.19
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPM------NKLVATTLEAK 54
+V A G +K + W +L + + + + +A+
Sbjct: 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQ 114
Query: 55 LFVFDLKT 62
++ +
Sbjct: 115 VYALNTSD 122
Score = 27.5 bits (61), Expect = 2.2
Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 10/65 (15%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCG---VDFDRRDIPMNKLVATTLEAKLFV 57
V G + + + ++ W+T + V ++ T +L
Sbjct: 105 HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGL-------VLIHTSNGQLQA 157
Query: 58 FDLKT 62
+
Sbjct: 158 LNEAD 162
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 32.0 bits (73), Expect = 0.092
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 20/122 (16%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNL-----------KNGVCGVDF--DRRDIPMNKLV 47
++ + D+ +FD K E + + G+ + + L+
Sbjct: 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY----LL 198
Query: 48 ATTLEAKLFVFDLKTLHREKGFAYLSE--KAHKATTVWAAKHLPQNRDLFVTCGGSGSLN 105
+ + + + ++D+ +E H A V + LF + L
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV-VEDVAWHLLHESLFGSVADDQKLM 257
Query: 106 LW 107
+W
Sbjct: 258 IW 259
Score = 27.8 bits (62), Expect = 2.2
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 31/96 (32%)
Query: 81 TVWAAKHLPQNRDLFVTCGGSGSLNLWQLVSALRADTNLCSIFRYSSNYPTQRTKPDIDD 140
V A+++PQN + T S + ++ D
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVF-----------------------------DYTK 160
Query: 141 IPMGVPGSLTLLQEATLS--SQPINSLDWSADKLGL 174
P S + L + L W+ + G
Sbjct: 161 HPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.11
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 35/162 (21%)
Query: 14 FDLKTMSLKW----ETNLKNGVCGVDFDRRDIP-MNKLVATTLEAKLFVFDLKTLHREKG 68
F+ ++ V +FD +D+ M K + + E + + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSG 63
Query: 69 FAYLSEKAHKATTVWAAKHLPQNR-DLFVTCGGSGSLNL---WQLVSALRADTNLCSIFR 124
L W + FV L + + L+S ++ + S+
Sbjct: 64 TLRL---------FWTLLSKQEEMVQKFV----EEVLRINYKF-LMSPIKTEQRQPSMMT 109
Query: 125 YSSNYPTQRTKPDIDD---IPMGVP--GSLTLLQEATLSSQP 161
Y QR + D+ V L++A L +P
Sbjct: 110 --RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Score = 31.0 bits (69), Expect = 0.24
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 40/152 (26%)
Query: 6 YDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIP-MNKLVATTLEAKLFVFDLKTLH 64
+ F+L C + R + L A T TL
Sbjct: 254 QNAKAWNAFNLS--------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 65 REKG---FA-YLSEKAHKATTVWAAKHLPQN--------RDLFVTCGGSGSLNLWQLVSA 112
++ YL + P+ RD T +N +L +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 113 LRADTNL------------CSIFRYSSNYPTQ 132
+ + N+ S+F S++ PT
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 30.1 bits (67), Expect = 0.29
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 42 PMNKLVATTLEAKLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGS 101
P N+L+ ++ + D KT + E ++ H N + F+
Sbjct: 93 PCNRLLLLYPGNQITILDSKTNKVLREI----EVDSANEIIYMYGHNEVNTEYFIWADNR 148
Query: 102 GSLNLW 107
G++
Sbjct: 149 GTIGFQ 154
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 30.2 bits (67), Expect = 0.37
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 1 MVVAGYDNGDLKMFDLKT--MSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVF 58
VV G+ NG + FDL + ++ + + V D + ++ ++F
Sbjct: 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338
Query: 59 DLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLW 107
+ K + K + + + PQ ++ G+ SL
Sbjct: 339 NPKDIATTKTTVSRFRG----SNLVPVVYCPQIY-SYIYSDGASSLRAV 382
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 29.7 bits (67), Expect = 0.51
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 13/104 (12%)
Query: 3 VAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKL--VATTLEAKLFVFDL 60
VA + D+ + D T ++ + GV P K V + L V D
Sbjct: 48 VANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS----PDGKQVYVTNMASSTLSVIDT 103
Query: 61 KTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSL 104
+ A + P + L+VT G ++
Sbjct: 104 TSNTVAGTVKTGKSPLGLALS-------PDGKKLYVTNNGDKTV 140
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPM---NKLVATTLEAKLFV 57
++ G + M+D KT L+W + + + + + +
Sbjct: 132 LLYLGRTEYTITMYDTKTRELRWNATYFDYA----ASLPEDDVDYKMSHFVSNGDGLVVT 187
Query: 58 FDLKT 62
D ++
Sbjct: 188 VDSES 192
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas
campestris}
Length = 243
Score = 27.9 bits (61), Expect = 1.7
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 6 YDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDLKTLHR 65
++ DL+T + + G + + T + FV+DL TL
Sbjct: 40 TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRL--IQLTWRNHEGFVYDLATLTP 97
Query: 66 EKGFAYLSE 74
F Y E
Sbjct: 98 RARFRYPGE 106
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 27.5 bits (61), Expect = 2.4
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 82 VWAAKHLPQNR-----DLFVTCGGSGSLN 105
V +PQ DLFVT G+G
Sbjct: 285 VEVHDWVPQLAILRQADLFVTHAGAGGSQ 313
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit;
protein/protein, homodimer bound to monomer, protein
binding; NMR {Homo sapiens}
Length = 50
Score = 25.2 bits (55), Expect = 2.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 141 IPMGVPGSLTLLQEATLSSQPINSLDWSAD 170
IP G+ L L QP + ++++ +
Sbjct: 11 IPPGLTELLQGYTVEVLRQQPPDLVEFAVE 40
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 27.4 bits (61), Expect = 2.8
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 15 DLKTMSLKWETNLKN-GVCGVDFDRRDIPMNKLVATTLEAK-LFVFDLKTLHREKGFAYL 72
D + L W + K+ V D + K + T L + + V+ K + + A
Sbjct: 26 DPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASD 85
Query: 73 SEKAHKATTVWAAK----HLPQNRDLFVTCGGSGSL 104
+ + D + GG G+L
Sbjct: 86 ESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTL 121
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 27.2 bits (61), Expect = 3.0
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 77 HKATTVWAAKHLPQNRDLFVTC----GGSGSLNLWQLVSALRADTNLCSI 122
H + +HL +++ VT +G + + +++A+R T L +I
Sbjct: 133 HDSI-RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTI 181
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 27.2 bits (60), Expect = 3.2
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 2 VVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDLK 61
+ G D + KW F P ++ + ++ L+VF
Sbjct: 24 IGLGSAGTAWYKLDTQAKDKKWTA-------LAAFP--GGPRDQATSAFIDGNLYVFGGI 74
Query: 62 TLHREKGFAYLSE 74
+ E ++
Sbjct: 75 GKNSEGLTQVFND 87
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 26.6 bits (59), Expect = 4.3
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 82 VWAAKHLPQNR-----DLFVTCGGSGSLNLWQLVSALRA 115
V A + +P + +T G +G++ A A
Sbjct: 283 VEAHQWIPFHSVLAHARACLTHGTTGAVL-----EAFAA 316
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 26.6 bits (59), Expect = 5.0
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 82 VWAAKHLPQNR-----DLFVTCGGSGSLNLWQLVSALRA 115
V + +PQ F+T G GS AL
Sbjct: 307 VEVHQWVPQLDILTKASAFITHAGMGSTM-----EALSN 340
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 26.2 bits (58), Expect = 7.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 82 VWAAKHLPQNR-----DLFVTCGGSGSLNLWQLVSALRA 115
V A + +P + + VT GG G+L AL
Sbjct: 299 VEAHRWVPHVKVLEQATVCVTHGGMGTLM-----EALYW 332
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 25.9 bits (56), Expect = 8.9
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGV--CGVDFDRRDIPMNKL--VATTLEAKLF 56
M+V Y N +L + D+ + ++ + + P N+ V ++
Sbjct: 14 MIVTNYPN-NLHVVDVASDTVYKSCVMPDKFGPGTAMMA----PDNRTAYVLNNHYGDIY 68
Query: 57 VFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQLVSALR 114
DL T S ++++ P ++++ T + LN +V R
Sbjct: 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 126
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 25.8 bits (57), Expect = 9.0
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 82 VWAAKHLPQNR-----DLFVTCGGSGSLNLWQLVSALRA 115
V +PQ DL V GGSG+ AL A
Sbjct: 294 VRLESWVPQAALLPHVDLVVHHGGSGTTL-----GALGA 327
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 129 YPTQRTKPDIDDIPMGVPGSLTLLQEATLSSQP 161
+PT TK + PMG G++ +L ++
Sbjct: 141 FPTL-TKKNPKKAPMGTAGAIRVLDALERNNAH 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,605,881
Number of extensions: 139551
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 37
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)