RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6415
(174 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 33.2 bits (74), Expect = 0.012
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWE-TNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFD 59
+++G + +KM+D+ T N V GV F +++ + L V+D
Sbjct: 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG---KFILSCADDKTLRVWD 275
Query: 60 LKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQ 108
K K AH+ V + VT ++ +W+
Sbjct: 276 YKNKRCMKTL-----NAHEHF-VTSLDFHK-TAPYVVTGSVDQTVKVWE 317
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 31.8 bits (70), Expect = 0.035
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 3 VAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEA--KLFVFDL 60
+A ++ ++ + D+ + + + + G P V + + D
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVIS----PDGTKVYVANAHSNDVSIIDT 61
Query: 61 KTLHR 65
T +
Sbjct: 62 ATNNV 66
Score = 24.4 bits (51), Expect = 9.8
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMN 44
+ VA + D+ + D T ++ + GV +
Sbjct: 46 VYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVY 89
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 31.8 bits (71), Expect = 0.039
Identities = 10/108 (9%), Positives = 26/108 (24%), Gaps = 6/108 (5%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLE-AKLFVFD 59
V D G + + D + + + V + + A++ + D
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMS----ASGRYLLVIGRDARIDMID 89
Query: 60 LKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLW 107
L A + + + ++R +
Sbjct: 90 LWA-KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 31.2 bits (69), Expect = 0.048
Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDL 60
G D+ ++FDL+ + N +CG+ L+A + V+D
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 61 KTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLW 107
R H V + T L +W
Sbjct: 300 LKADRAGVL-----AGHDNR-VSCLGVTD-DGMAVATGSWDSFLKIW 339
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 31.0 bits (68), Expect = 0.054
Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDL 60
+VV+G + ++++D++ + + ++V+ + K+ V+DL
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLRVLEGHEELV----RCIRFDNKRIVSGAYDGKIKVWDL 245
Query: 61 KTLHREKGFAYLSE----KAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLW 107
+ A H V+ + V+ ++ +W
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGR-VFRLQFDEF---QIVSSSHDDTILIW 292
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.8 bits (65), Expect = 0.16
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 17/122 (13%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLK-------------WETNLKNGVCGVDFDRRDIPMNKLV 47
VV+G + +K+++L+ + K K+ V V + D ++
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---EYIL 324
Query: 48 ATTLEAKLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLW 107
+ + + + +D K+ + + P ++F T G +W
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIW 383
Query: 108 QL 109
+
Sbjct: 384 KY 385
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 28.8 bits (62), Expect = 0.36
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 54 KLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQL 109
+ V+++ + + AH ++V + L + V+ G ++ W +
Sbjct: 247 SVIVWNMNK---PSDHPIIIKGAHAMSSVNSVIWLNETT--IVSAGQDSNIKFWNV 297
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 27.5 bits (59), Expect = 0.98
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 28 KNGVCGVDFDRRDIPMNKLVATTLEAKLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKH 87
VC V + V T + + V+D+ + + L + + K
Sbjct: 51 GEVVCAVTIS----NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDN-YIRSCKL 105
Query: 88 LPQNRDLF 95
LP L
Sbjct: 106 LPDGCTLI 113
Score = 26.7 bits (57), Expect = 1.7
Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 44 NKLVATTLEAKLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGS 103
V+T + L + + + ++ V + ++ VT G
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGAS------IFQSKESSS-VLSCDISVDDK-YIVTGSGDKK 329
Query: 104 LNLWQLV 110
+++++
Sbjct: 330 ATVYEVI 336
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 27.0 bits (58), Expect = 1.3
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 13 MFDLKTMSLKWETNLKNGVCGVDFDRRDIPMNKLVATTLEA 53
+++ K +++ T L++G+ + FD + +NK TL
Sbjct: 2 IYEGKAITV---TALESGIVELKFDLKGESVNKFNRLTLNE 39
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 59
Score = 24.7 bits (54), Expect = 1.6
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 22 KWETNLKNGVCGVDFDRRDIPMNKLVA 48
+W+ +LK+GV V +R D K
Sbjct: 30 RWKCSLKDGV--VTINRNDYTFQKAQV 54
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 26.8 bits (58), Expect = 1.7
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGV 31
+V G +G L + T WE GV
Sbjct: 490 VVFQGTADGRLVAYHAATGEKLWEAPTGTGV 520
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II
regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 23.8 bits (52), Expect = 2.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 141 IPMGVPGSLTLLQEATLSSQPINSLDWSAD 170
IP G+ L L QP + +D++ +
Sbjct: 1 IPPGLTELLQGYTVEVLRQQPPDLVDFAVE 30
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 26.1 bits (56), Expect = 2.5
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 2 VVAGYDNGDLKMFDLKTMSLKWETNLKNGV 31
V G G + + W+ ++G+
Sbjct: 472 VFQGTAAGQMHAYSADKGEALWQFEAQSGI 501
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 26.1 bits (56), Expect = 2.9
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGV 31
+V +G LK D K W + +G
Sbjct: 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGG 507
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 23.9 bits (52), Expect = 3.2
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 22 KWETNLKNGVCGVDFDRRDIPMNK 45
KW+ +LK+G+ ++ + RD +K
Sbjct: 19 KWKFHLKDGI--MNLNGRDYIFSK 40
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 25.3 bits (53), Expect = 5.3
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 54 KLFVFDLKTLHREKGFAYLSEKAHKATTVWAAKHLPQNRDLFVTCGGSGSLNLWQLV 110
+F++ +K + + AHK V + V+ G + W +V
Sbjct: 238 NIFIYSVKRPMKI----IKALNAHKDG-VNNLLWETPST--LVSSGADACIKRWNVV 287
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 582
Score = 24.9 bits (53), Expect = 6.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 2 VVAGYDNGDLKMFDLKTMSLKWETNLKNGV 31
V G +G K FD K+ W+ +G+
Sbjct: 500 VFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
{Methylobacterium extorquens [TaxId: 408]}
Length = 596
Score = 24.9 bits (53), Expect = 6.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGV 31
+V G +G LK D T L W+ + +G
Sbjct: 486 LVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B
chain {Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 24.4 bits (51), Expect = 8.5
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 1 MVVAGYDNGDLKMFDLKTMSLKWETNLKNGVCGVDFDR 38
+ L DL T +L V
Sbjct: 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,456
Number of extensions: 26212
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 25
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)