Query psy6416
Match_columns 193
No_of_seqs 151 out of 160
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:27:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417|consensus 100.0 1.3E-39 2.8E-44 295.9 13.2 112 72-183 350-461 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 1E-32 2.3E-37 231.2 13.3 106 72-177 86-196 (196)
3 KOG2417|consensus 98.2 8.7E-07 1.9E-11 82.2 2.2 50 1-76 56-105 (462)
4 PF08412 Ion_trans_N: Ion tran 57.0 10 0.00022 28.1 2.4 29 42-70 43-71 (77)
5 PF03034 PSS: Phosphatidyl ser 35.5 1.3E+02 0.0027 27.5 6.4 67 108-176 74-144 (280)
6 PF13172 PepSY_TM_1: PepSY-ass 29.7 84 0.0018 19.2 3.1 20 43-62 5-24 (34)
7 COG2862 Predicted membrane pro 27.9 3.8E+02 0.0082 22.8 7.7 61 60-129 17-77 (169)
8 PF02935 COX7C: Cytochrome c o 26.7 1.2E+02 0.0027 21.5 3.9 31 37-70 29-60 (65)
9 PF03350 UPF0114: Uncharacteri 24.5 3.5E+02 0.0075 21.2 9.0 63 62-128 9-71 (124)
10 PF00507 Oxidored_q4: NADH-ubi 24.1 3E+02 0.0065 20.3 6.2 49 19-67 40-93 (102)
11 PLN03192 Voltage-dependent pot 22.9 93 0.002 31.3 3.6 26 16-41 58-83 (823)
12 PLN02930 CDP-diacylglycerol-se 22.7 2.5E+02 0.0054 26.5 6.1 66 109-176 141-210 (353)
13 PF01306 LacY_symp: LacY proto 21.3 7.1E+02 0.015 23.6 9.2 81 95-175 300-398 (412)
14 KOG0826|consensus 20.8 1.5E+02 0.0032 28.1 4.2 55 130-187 25-87 (357)
15 cd06550 TM_ABC_iron-siderophor 20.8 5.3E+02 0.011 21.9 14.5 82 108-192 85-168 (261)
No 1
>KOG2417|consensus
Probab=100.00 E-value=1.3e-39 Score=295.90 Aligned_cols=112 Identities=73% Similarity=1.149 Sum_probs=107.9
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHhcccccchh
Q psy6416 72 VTNIRFGCIVLTSIRGLLLTLTKFFYAISSSKSSNIIVLVLAQIMGMYFVSSVLLMRMNMPPEYRSIISKVLGDLQFNFY 151 (193)
Q Consensus 72 isnI~fGvIiv~Sir~vL~tl~kfF~~~sss~ssn~ivL~laqlmG~YfiSs~LLiRsnLP~~~~~~it~vLg~lef~f~ 151 (193)
+|.+++|+|+++|+||.+.|++|||++.++++|+|+++|++||+|||||+|+++++|+|+|.|||.++||+|||++||||
T Consensus 350 ISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~ivl~l~qimgmyf~ssvllirms~p~Eyr~iit~VlGdlqfnfy 429 (462)
T KOG2417|consen 350 ISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNIIVLFLAQIMGMYFVSSVLLIRMSMPAEYRTIITEVLGDLQFNFY 429 (462)
T ss_pred HHHHhhheeEEeehhhhhhhhhhhhheecccccccchHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhcchhH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHhcCcccch
Q psy6416 152 HRWFDVIFLLSALSSIVFLYLAHIQSSNNISA 183 (193)
Q Consensus 152 ~~wFD~iFliSa~~T~~~i~~~~k~~~~~~~~ 183 (193)
|||||.+|++||++|++.++++||.++++.++
T Consensus 430 hRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a 461 (462)
T KOG2417|consen 430 HRWFDVIFLVSALSSILFLYLHHKSRQSDKHA 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccC
Confidence 99999999999999999999999998777654
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=1e-32 Score=231.18 Aligned_cols=106 Identities=56% Similarity=0.968 Sum_probs=102.0
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHhc---cc
Q psy6416 72 VTNIRFGCIVLTSIRGLLLTLTKFFYAISSSKS--SNIIVLVLAQIMGMYFVSSVLLMRMNMPPEYRSIISKVLG---DL 146 (193)
Q Consensus 72 isnI~fGvIiv~Sir~vL~tl~kfF~~~sss~s--sn~ivL~laqlmG~YfiSs~LLiRsnLP~~~~~~it~vLg---~l 146 (193)
+|.++.|+|+++|+|++++|++|++++.+++++ +|.++|++||+||+||+||++|||+|||+|++.+++++|| ++
T Consensus 86 ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg~~~~~ 165 (196)
T PF12430_consen 86 ISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILGENSLL 165 (196)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHccccCC
Confidence 888999999999999999999999999988776 6799999999999999999999999999999999999999 49
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhHhc
Q psy6416 147 QFNFYHRWFDVIFLLSALSSIVFLYLAHIQS 177 (193)
Q Consensus 147 ef~f~~~wFD~iFliSa~~T~~~i~~~~k~~ 177 (193)
|++|+|+|||.+|++||++|++++|++||++
T Consensus 166 ~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 166 EFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999975
No 3
>KOG2417|consensus
Probab=98.16 E-value=8.7e-07 Score=82.22 Aligned_cols=50 Identities=44% Similarity=0.958 Sum_probs=42.0
Q ss_pred CcchhhhhhhcccCccchhhhhHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy6416 1 MFELIIFEILNILDSSSRYFHWNIVLYCMLFMVIVLIPFYIGSRYFHWNIVLYCMLFMVIVLIPFYIGYFIVTNIR 76 (193)
Q Consensus 1 ~~elvifEi~~~l~~~~R~~~W~~~l~~~l~~li~~lP~y~~sr~~hw~~~l~~~lf~~i~~ip~YI~y~~isnI~ 76 (193)
++|||||||+|+|++++|+.||+.++.| +++++++++|+|.||++++|++
T Consensus 56 lfeliifeii~vl~~~sr~~~w~~~l~~--------------------------ill~lv~~ip~Y~~y~ii~~i~ 105 (462)
T KOG2417|consen 56 LFELIIFEIIDVLSPESRMFCWKVCLSL--------------------------ILLTLVFMIPYYHCYLIIRNIG 105 (462)
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHhHHH--------------------------HHHHHHHHHHHHhheeeeeccc
Confidence 5899999999999999887776666654 5558888999999999999985
No 4
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=56.97 E-value=10 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.835 Sum_probs=24.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 42 GSRYFHWNIVLYCMLFMVIVLIPFYIGYF 70 (193)
Q Consensus 42 ~sr~~hw~~~l~~~lf~~i~~ip~YI~y~ 70 (193)
|.-.++|.+...++++..++.+|+-++|+
T Consensus 43 S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 43 SKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 34468899999999999999999999875
No 5
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=35.54 E-value=1.3e+02 Score=27.53 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHhc---c-cccchhhhhhHHHHHHHHHHHHHHHHHHhHh
Q psy6416 108 IVLVLAQIMGMYFVSSVLLMRMNMPPEYRSIISKVLG---D-LQFNFYHRWFDVIFLLSALSSIVFLYLAHIQ 176 (193)
Q Consensus 108 ivL~laqlmG~YfiSs~LLiRsnLP~~~~~~it~vLg---~-lef~f~~~wFD~iFliSa~~T~~~i~~~~k~ 176 (193)
=.-++|+..|-+. -++++|..-=-..-++.=|++. + .-|||...|-|.+++=--++..++++++-++
T Consensus 74 D~f~~aH~~GW~~--Kali~Rd~~l~w~~Si~fE~~Elsf~h~LPnF~ECWWD~~iLDvl~CN~~Gi~~Gm~~ 144 (280)
T PF03034_consen 74 DIFVLAHFLGWFG--KALILRDWWLCWILSIAFELLELSFQHLLPNFNECWWDHWILDVLICNGLGIWLGMKT 144 (280)
T ss_pred chhHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3678889999877 6778898777777676666554 2 7789999999999988888888888877664
No 6
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=29.71 E-value=84 Score=19.19 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy6416 43 SRYFHWNIVLYCMLFMVIVL 62 (193)
Q Consensus 43 sr~~hw~~~l~~~lf~~i~~ 62 (193)
-|+.|..+++....+++++.
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~ 24 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLA 24 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777766666655543
No 7
>COG2862 Predicted membrane protein [Function unknown]
Probab=27.87 E-value=3.8e+02 Score=22.79 Aligned_cols=61 Identities=15% Similarity=0.306 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy6416 60 IVLIPFYIGYFIVTNIRFGCIVLTSIRGLLLTLTKFFYAISSSKSSNIIVLVLAQIMGMYFVSSVLLMRM 129 (193)
Q Consensus 60 i~~ip~YI~y~~isnI~fGvIiv~Sir~vL~tl~kfF~~~sss~ssn~ivL~laqlmG~YfiSs~LLiRs 129 (193)
.+++|+|.+=...-.+.. -++++++-...+-.. ..+.+-+.+.+-|+-.++.+++++.|=+
T Consensus 17 wll~pv~~gLi~al~lf~--------~~f~~~i~~~~~~~~-~~~e~~lil~~l~liDl~Lva~lLvmv~ 77 (169)
T COG2862 17 WLLAPVYLGLIVALVLFA--------YKFFKEIWHLLPNLF-DMGENDLILAALSLVDLLLVAGLLVMVS 77 (169)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHcccc-ccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899887544322222 114444433222222 2246668888899999999999998753
No 8
>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....
Probab=26.65 E-value=1.2e+02 Score=21.50 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=19.4
Q ss_pred hccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy6416 37 IPFYIGSRYFHWNI-VLYCMLFMVIVLIPFYIGYF 70 (193)
Q Consensus 37 lP~y~~sr~~hw~~-~l~~~lf~~i~~ip~YI~y~ 70 (193)
||....+| |.+ ..|..-|.+-+.+||++++.
T Consensus 29 LPF~~~nK---~~~~~~~~~f~g~GF~~PF~~~~~ 60 (65)
T PF02935_consen 29 LPFNVKNK---WPFAVKFWGFFGSGFAAPFLIVRW 60 (65)
T ss_dssp SSS--SSH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcch---hHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56666555 555 34445556778999999874
No 9
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=24.50 E-value=3.5e+02 Score=21.19 Aligned_cols=63 Identities=17% Similarity=0.362 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 62 LIPFYIGYFIVTNIRFGCIVLTSIRGLLLTLTKFFYAISSSKSSNIIVLVLAQIMGMYFVSSVLLMR 128 (193)
Q Consensus 62 ~ip~YI~y~~isnI~fGvIiv~Sir~vL~tl~kfF~~~sss~ssn~ivL~laqlmG~YfiSs~LLiR 128 (193)
+.|.|+|-.+.+-..+. ....-+...+...+.....+.+.+-+.+-+-|..=+|.+++++++=
T Consensus 9 ~~~~vig~l~~~~llf~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~ 71 (124)
T PF03350_consen 9 VLPAVIGLLLGSVLLFV----KGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIF 71 (124)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888887765554442 1112222222222222223445555677788899999999999874
No 10
>PF00507 Oxidored_q4: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; InterPro: IPR000440 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains chain 3 of the NADH-ubiquinone / plastoquinone oxidoreductase.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_A.
Probab=24.12 E-value=3e+02 Score=20.29 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHH-----HHHhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 19 YFHWNIVLYCMLFMV-----IVLIPFYIGSRYFHWNIVLYCMLFMVIVLIPFYI 67 (193)
Q Consensus 19 ~~~W~~~l~~~l~~l-----i~~lP~y~~sr~~hw~~~l~~~lf~~i~~ip~YI 67 (193)
.+.-|.=.+++++++ ++.+|+-.+.+...+......++|.++..+.++-
T Consensus 40 ~fs~~ff~i~ilFliFDvEivll~p~~~~~~~~~~~~~~~~~~Fl~il~~gl~y 93 (102)
T PF00507_consen 40 PFSIQFFLIAILFLIFDVEIVLLFPWAFSFYSLGFFSLISMFLFLLILLLGLLY 93 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH
Confidence 556666667776654 5677777777666666666666676666665543
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=22.89 E-value=93 Score=31.33 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=15.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHhcccc
Q psy6416 16 SSRYFHWNIVLYCMLFMVIVLIPFYI 41 (193)
Q Consensus 16 ~~R~~~W~~~l~~~l~~li~~lP~y~ 41 (193)
+.|+..|..-+..+++...+++|+..
T Consensus 58 ~~~~~~Wd~~~~~~~~y~~~~~p~~~ 83 (823)
T PLN03192 58 DSRYRWWETLMVVLVAYSAWVYPFEV 83 (823)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666644
No 12
>PLN02930 CDP-diacylglycerol-serine O-phosphatidyltransferase
Probab=22.68 E-value=2.5e+02 Score=26.52 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHhc---c-cccchhhhhhHHHHHHHHHHHHHHHHHHhHh
Q psy6416 109 VLVLAQIMGMYFVSSVLLMRMNMPPEYRSIISKVLG---D-LQFNFYHRWFDVIFLLSALSSIVFLYLAHIQ 176 (193)
Q Consensus 109 vL~laqlmG~YfiSs~LLiRsnLP~~~~~~it~vLg---~-lef~f~~~wFD~iFliSa~~T~~~i~~~~k~ 176 (193)
.-++|+..|-+. -++++|..-=...-++.-|+.. . .-|||.+.|-|.+.+=--++..++++++-++
T Consensus 141 ~F~~aH~lGW~~--KaliiRd~~l~w~~SI~FEl~Elsf~H~LPNF~ECWWDhiiLDVL~CN~lGI~lGm~~ 210 (353)
T PLN02930 141 EFVVAHILGWWG--KAIMIRNQPLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLDVLICNWFGIWAGMHT 210 (353)
T ss_pred eehHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHCCchHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 457788888765 4577888777777776666655 2 8899999999999987777777777766553
No 13
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=21.32 E-value=7.1e+02 Score=23.63 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=51.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHH-----HHHHHHHHHHHHhcCChhHHHHHHhH-------hcc-----cccchhhhh-hH
Q psy6416 95 FFYAISSSKSSNIIVLVLAQIM-----GMYFVSSVLLMRMNMPPEYRSIISKV-------LGD-----LQFNFYHRW-FD 156 (193)
Q Consensus 95 fF~~~sss~ssn~ivL~laqlm-----G~YfiSs~LLiRsnLP~~~~~~it~v-------Lg~-----lef~f~~~w-FD 156 (193)
..|...++.++|...+.+.|+. +++.++...-++.+.|++.+.-+--+ +|. +-=..||+. |.
T Consensus 300 ~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~ 379 (412)
T PF01306_consen 300 AIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ 379 (412)
T ss_dssp HHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence 4445555667888888888886 89999999999999999986533211 121 122367777 77
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy6416 157 VIFLLSALSSIVFLYLAHI 175 (193)
Q Consensus 157 ~iFliSa~~T~~~i~~~~k 175 (193)
.+|++=+...++...++-+
T Consensus 380 ~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 380 HTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 7887666655544444333
No 14
>KOG0826|consensus
Probab=20.83 E-value=1.5e+02 Score=28.10 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=33.1
Q ss_pred cCChhHHHHHHhHhc---c---cccchhhhhhHHHHHHHHHHHHHHHHHHhHhcCcccch--hhhh
Q psy6416 130 NMPPEYRSIISKVLG---D---LQFNFYHRWFDVIFLLSALSSIVFLYLAHIQSSNNISA--EQLI 187 (193)
Q Consensus 130 nLP~~~~~~it~vLg---~---lef~f~~~wFD~iFliSa~~T~~~i~~~~k~~~~~~~~--~~~~ 187 (193)
+||...|..++.+++ . .-+-..+||||.+|.+ +..+.=|..-|..++++.+ |||.
T Consensus 25 ~L~t~lrpAL~~ll~~~A~~~~~~~~~l~r~fdE~f~~---l~liLq~hyLr~~~sSF~E~fYgLq 87 (357)
T KOG0826|consen 25 ELDTLLRPALQYLLKYFALRPPRYLLRLLRYFDEWFQA---LDLILQWHYLRTYNSSFIESFYGLQ 87 (357)
T ss_pred hHHHhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH---HHHHHHHHHHhcccccHHHhhhhhh
Confidence 455555555555554 3 2223789999999954 5555556555666666665 4554
No 15
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=20.81 E-value=5.3e+02 Score=21.94 Aligned_cols=82 Identities=12% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHh-Hhccc-ccchhhhhhHHHHHHHHHHHHHHHHHHhHhcCcccchhh
Q psy6416 108 IVLVLAQIMGMYFVSSVLLMRMNMPPEYRSIISK-VLGDL-QFNFYHRWFDVIFLLSALSSIVFLYLAHIQSSNNISAEQ 185 (193)
Q Consensus 108 ivL~laqlmG~YfiSs~LLiRsnLP~~~~~~it~-vLg~l-ef~f~~~wFD~iFliSa~~T~~~i~~~~k~~~~~~~~~~ 185 (193)
....++-+.++-+-+..+++... |++....++. ..|+. ..+.-|-| ....++.+..+......||..--..|++.
T Consensus 85 ~~~~iGi~~~~~~~~~~~~ls~~-~~~~~~~~~~~L~G~i~~~~~~dl~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~~ 161 (261)
T cd06550 85 KLILIGIVLSAFFSAGVILISLL-SDDSLQDLNIWLFGSILGVTWEDLL--ILLIILLLVLLLLLLLSRKLNLLTFDEDL 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHhccCCCCCHHHHH--HHHHHHHHHHHHHHHHHHhCchhhcCHHH
Confidence 45566666677666666666654 4334444444 45663 33333333 33344445555555667777777788888
Q ss_pred hhhcccC
Q psy6416 186 LISKGIR 192 (193)
Q Consensus 186 ~~~~g~~ 192 (193)
-++.|++
T Consensus 162 A~~~Gi~ 168 (261)
T cd06550 162 AKSLGIN 168 (261)
T ss_pred HHHCCCC
Confidence 8888876
Done!