Query psy6416
Match_columns 193
No_of_seqs 151 out of 160
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 17:27:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_L VIIIA, cytochrome C oxi 20.1 1.4E+02 0.0047 19.2 3.9 31 37-70 11-42 (47)
2 2lly_A Neuronal acetylcholine 17.7 3E+02 0.01 20.7 6.1 25 149-173 107-131 (137)
3 2y69_L Cytochrome C oxidase su 16.5 1.5E+02 0.0053 20.1 3.7 31 37-70 27-58 (63)
4 3kz5_E Protein SOPB; partition 12.8 67 0.0023 21.5 1.0 18 128-145 29-46 (52)
5 2k89_A PLA2P, PLAP, phospholip 10.5 2.6E+02 0.0089 19.9 3.5 25 119-143 42-66 (80)
6 2lh0_A Histone chaperone RTT10 9.1 2E+02 0.0068 20.2 2.4 29 129-157 10-40 (70)
7 1oed_C Acetylcholine receptor 8.9 8.2E+02 0.028 20.3 7.1 49 52-100 10-58 (260)
8 3e9v_A Protein BTG2; B-cell tr 8.5 1.9E+02 0.0067 21.9 2.3 39 117-155 9-48 (120)
9 1bcp_F Pertussis toxin; ADP-ri 8.4 1.4E+02 0.0049 21.6 1.5 10 150-159 48-57 (99)
10 2l6x_A GPR, green-light absorb 8.4 8.2E+02 0.028 19.9 8.0 48 17-68 76-124 (243)
No 1
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=20.13 E-value=1.4e+02 Score=19.25 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=22.1
Q ss_pred hccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 37 IPFYIGSRY-FHWNIVLYCMLFMVIVLIPFYIGYF 70 (193)
Q Consensus 37 lP~y~~sr~-~hw~~~l~~~lf~~i~~ip~YI~y~ 70 (193)
||..-.+|+ +-. .|...|.+-+.+||.+++.
T Consensus 11 LPF~~~nk~~~~~---~~~~f~g~GF~~PF~i~~~ 42 (47)
T 1v54_L 11 IPFSVENKWRLLA---MMTLFFGSGFAAPFFIVRH 42 (47)
T ss_dssp SSSCCSSHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcccHHHH---HHHHHHHHHHHhHHHHHHH
Confidence 577777887 433 4555677788999998864
No 2
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=17.68 E-value=3e+02 Score=20.71 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHH
Q psy6416 149 NFYHRWFDVIFLLSALSSIVFLYLA 173 (193)
Q Consensus 149 ~f~~~wFD~iFliSa~~T~~~i~~~ 173 (193)
.+.||.|=.+|.+.++..-+++...
T Consensus 107 ~~~dr~~lwif~~~~~~gt~~i~~~ 131 (137)
T 2lly_A 107 GGIDRIFLWMFIIVCLLGTVGLFLP 131 (137)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhheec
Confidence 5889999988888877666666654
No 3
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=16.51 E-value=1.5e+02 Score=20.12 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=21.5
Q ss_pred hccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 37 IPFYIGSRY-FHWNIVLYCMLFMVIVLIPFYIGYF 70 (193)
Q Consensus 37 lP~y~~sr~-~hw~~~l~~~lf~~i~~ip~YI~y~ 70 (193)
||..-.+|+ +-++ |...|.+-+.+||.+++.
T Consensus 27 LPF~~~nk~~~~~~---~~~f~g~GF~~PF~i~~~ 58 (63)
T 2y69_L 27 IPFSVENKWRLLAM---MTLFFGSGFAAPFFIVRH 58 (63)
T ss_dssp SSSCCSSHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCcCCcchhHHHHH---HHHHHHHHHhhhHHHHHH
Confidence 577777777 4433 334567778999999874
No 4
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=12.84 E-value=67 Score=21.52 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=16.2
Q ss_pred HhcCChhHHHHHHhHhcc
Q psy6416 128 RMNMPPEYRSIISKVLGD 145 (193)
Q Consensus 128 RsnLP~~~~~~it~vLg~ 145 (193)
|+++|++...+|..+|.+
T Consensus 29 ~~~iP~~~IeKIE~lL~e 46 (52)
T 3kz5_E 29 RSRVPTECIEKIEAILKE 46 (52)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 688999999999999986
No 5
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=10.51 E-value=2.6e+02 Score=19.93 Aligned_cols=25 Identities=12% Similarity=0.402 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhHh
Q psy6416 119 YFVSSVLLMRMNMPPEYRSIISKVL 143 (193)
Q Consensus 119 YfiSs~LLiRsnLP~~~~~~it~vL 143 (193)
|.++.=-+-|.+||..|..+|.+.+
T Consensus 42 ~~aAqkFi~~n~Lp~~yldqI~~FI 66 (80)
T 2k89_A 42 WLTAYNFLQKNDLNPMFLDQVAKFI 66 (80)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6677777899999999999887654
No 6
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=9.06 E-value=2e+02 Score=20.23 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=23.0
Q ss_pred hcCChhHHHHHHhHhcc-ccc-chhhhhhHH
Q psy6416 129 MNMPPEYRSIISKVLGD-LQF-NFYHRWFDV 157 (193)
Q Consensus 129 snLP~~~~~~it~vLg~-lef-~f~~~wFD~ 157 (193)
.+||++.+.+|..+-.. ++- .+|+..||.
T Consensus 10 ~~LP~~Lq~kV~aIV~~~PsSl~VF~~Ly~y 40 (70)
T 2lh0_A 10 DELPESLSRKIGTVVRVLPSSLEIFEELYKY 40 (70)
T ss_dssp GGSCHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 48999999999998885 433 488888886
No 7
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=8.88 E-value=8.2e+02 Score=20.29 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHh
Q psy6416 52 LYCMLFMVIVLIPFYIGYFIVTNIRFGCIVLTSIRGLLLTLTKFFYAIS 100 (193)
Q Consensus 52 l~~~lf~~i~~ip~YI~y~~isnI~fGvIiv~Sir~vL~tl~kfF~~~s 100 (193)
+=.++.+...++-||+--=.-.-+.+|+-++-++.-++..++.-.+.+|
T Consensus 10 iP~~li~~ls~~~F~Lp~~~gekv~l~it~lLs~tvfl~~~~~~lP~tS 58 (260)
T 1oed_C 10 TPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETA 58 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHeeeCCCCCCeEeehHHHHHHHHHHHHHHHHHCCCCc
Confidence 3345555555556666544345577788888888888888888888776
No 8
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=8.53 E-value=1.9e+02 Score=21.87 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhHhcc-cccchhhhhh
Q psy6416 117 GMYFVSSVLLMRMNMPPEYRSIISKVLGD-LQFNFYHRWF 155 (193)
Q Consensus 117 G~YfiSs~LLiRsnLP~~~~~~it~vLg~-lef~f~~~wF 155 (193)
++-|+++.+--|..+|.+....-.+-|++ +.=++=+.||
T Consensus 9 av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67888888877777999986665555543 3333444444
No 9
>1bcp_F Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_F 1pto_F*
Probab=8.42 E-value=1.4e+02 Score=21.64 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=7.6
Q ss_pred hhhhhhHHHH
Q psy6416 150 FYHRWFDVIF 159 (193)
Q Consensus 150 f~~~wFD~iF 159 (193)
-.|.|||.+.
T Consensus 48 ehdtwfdtml 57 (99)
T 1bcp_F 48 EHDTWFDTML 57 (99)
T ss_dssp SSCTHHHHHH
T ss_pred cccHHHHHHH
Confidence 3588999874
No 10
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=8.41 E-value=8.2e+02 Score=19.92 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=28.8
Q ss_pred chhhhhHHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6416 17 SRYFHWNIVLYCMLFMVIVLIPFY-IGSRYFHWNIVLYCMLFMVIVLIPFYIG 68 (193)
Q Consensus 17 ~R~~~W~~~l~~~l~~li~~lP~y-~~sr~~hw~~~l~~~lf~~i~~ip~YI~ 68 (193)
-||..|=++.=.+++-+.+++=.- -.+|...||+..-..+ .++--|++
T Consensus 76 ~RYidWllTvPLllvel~Li~~~~g~~~~~~~~~li~as~v----Miv~G~~g 124 (243)
T 2l6x_A 76 FRYIDWLLTVPLLICEFYLILAAATNVAGSLFKKLLVGSLV----MLVFGYMG 124 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCTHHHHHHHHHHHH----HHHHHHHH
T ss_pred eehhcHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHH----HHHHHHHH
Confidence 499999888776666555443222 2567778886554333 34455555
Done!