Query psy6416
Match_columns 193
No_of_seqs 151 out of 160
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 17:28:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oeda_ f.36.1.1 (A:) Acetylch 16.7 1.8E+02 0.013 20.9 10.2 26 75-100 33-58 (227)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.2 1.9E+02 0.014 17.6 4.5 21 46-66 3-23 (57)
3 d1ji4a_ a.25.1.1 (A:) Dodecame 7.9 46 0.0034 22.8 0.4 12 40-51 18-29 (144)
4 d3e9va1 d.370.1.1 (A:9-128) NG 7.7 1.1E+02 0.0077 21.6 2.3 39 117-155 9-48 (120)
5 d1prtf_ b.40.2.1 (F:) Pertussi 6.7 96 0.007 20.9 1.6 10 150-159 47-56 (98)
6 d2oufa1 a.292.1.1 (A:13-92) Hy 6.5 80 0.0058 21.0 1.1 15 152-166 4-18 (80)
7 d1ji5a_ a.25.1.1 (A:) Dodecame 6.4 53 0.0038 22.4 0.1 12 39-50 16-27 (142)
8 d1o9ra_ a.25.1.1 (A:) Dodecame 6.1 1.5E+02 0.011 20.5 2.5 32 128-159 7-59 (162)
9 d2pp4a1 a.277.1.1 (A:119-225) 6.0 2.6E+02 0.019 19.3 3.8 56 82-149 5-62 (107)
10 d2fjca1 a.25.1.1 (A:27-177) Do 5.8 58 0.0042 22.4 -0.0 12 39-50 23-34 (151)
No 1
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=16.71 E-value=1.8e+02 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=15.0
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHh
Q psy6416 75 IRFGCIVLTSIRGLLLTLTKFFYAIS 100 (193)
Q Consensus 75 I~fGvIiv~Sir~vL~tl~kfF~~~s 100 (193)
+..|+-++-++.-++..+..-.+.+|
T Consensus 33 i~l~it~lL~~~v~~~~v~~~lP~tS 58 (227)
T d1oeda_ 33 MTLSISVLLSLTVFLLVIVELIPSTS 58 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHhCCCcc
Confidence 45555555566666666655555554
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.18 E-value=1.9e+02 Score=17.55 Aligned_cols=21 Identities=29% Similarity=0.516 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6416 46 FHWNIVLYCMLFMVIVLIPFY 66 (193)
Q Consensus 46 ~hw~~~l~~~lf~~i~~ip~Y 66 (193)
+|||--.++.++++++++-+.
T Consensus 3 ~~~R~~~~~~~~~~i~i~~~s 23 (57)
T d2h8pc1 3 LHWRAAGAATVLLVIVLLAGS 23 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 699988888888877776443
No 3
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}
Probab=7.95 E-value=46 Score=22.85 Aligned_cols=12 Identities=33% Similarity=1.030 Sum_probs=9.9
Q ss_pred ccchhhHHHHHH
Q psy6416 40 YIGSRYFHWNIV 51 (193)
Q Consensus 40 y~~sr~~hw~~~ 51 (193)
|+..|++||+.-
T Consensus 18 ~~~~~~~HWnv~ 29 (144)
T d1ji4a_ 18 FMKVHNFHWNVK 29 (144)
T ss_dssp HHHHHHHHHHEE
T ss_pred HHHHhhhcccee
Confidence 788899999863
No 4
>d3e9va1 d.370.1.1 (A:9-128) NGF-inducible anti-proliferative protein PC3 (BTG2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.67 E-value=1.1e+02 Score=21.62 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHhHhcc-cccchhhhhh
Q psy6416 117 GMYFVSSVLLMRMNMPPEYRSIISKVLGD-LQFNFYHRWF 155 (193)
Q Consensus 117 G~YfiSs~LLiRsnLP~~~~~~it~vLg~-lef~f~~~wF 155 (193)
++-|+++.+-....+|.+....-.+-|++ +.=+|=+.||
T Consensus 9 av~Fl~~ll~~~~~l~~~~~~~F~~~L~~~L~~~y~~HWy 48 (120)
T d3e9va1 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 67888886656667999887766666655 4444555555
No 5
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=6.67 E-value=96 Score=20.87 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=7.7
Q ss_pred hhhhhhHHHH
Q psy6416 150 FYHRWFDVIF 159 (193)
Q Consensus 150 f~~~wFD~iF 159 (193)
-.+.|||.+.
T Consensus 47 ~~~twfdtml 56 (98)
T d1prtf_ 47 EHDTWFDTML 56 (98)
T ss_dssp TTCHHHHHHH
T ss_pred ccccHHHHHH
Confidence 4588999874
No 6
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=6.51 E-value=80 Score=21.00 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHH
Q psy6416 152 HRWFDVIFLLSALSS 166 (193)
Q Consensus 152 ~~wFD~iFliSa~~T 166 (193)
|+|||.+|=++--++
T Consensus 4 dK~~dIif~An~~lv 18 (80)
T d2oufa1 4 DKWNDIIFHASKKLS 18 (80)
T ss_dssp HHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHhhHHHH
Confidence 789999997765543
No 7
>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}
Probab=6.40 E-value=53 Score=22.41 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.0
Q ss_pred cccchhhHHHHH
Q psy6416 39 FYIGSRYFHWNI 50 (193)
Q Consensus 39 ~y~~sr~~hw~~ 50 (193)
.|+..+.+||++
T Consensus 16 l~~k~~~~HWnv 27 (142)
T d1ji5a_ 16 LFTKLHNFHWYV 27 (142)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHhhccc
Confidence 367788888875
No 8
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}
Probab=6.12 E-value=1.5e+02 Score=20.49 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=20.9
Q ss_pred HhcCChhHHHHHHhHh---------------------cccccchhhhhhHHHH
Q psy6416 128 RMNMPPEYRSIISKVL---------------------GDLQFNFYHRWFDVIF 159 (193)
Q Consensus 128 RsnLP~~~~~~it~vL---------------------g~lef~f~~~wFD~iF 159 (193)
+++||++.+..+.+.| -+++|.-+|..||..+
T Consensus 7 ~~~l~~~~~~~~~~~Ln~~La~~~~l~~k~~~~HWnv~G~~F~~lH~~~~~~~ 59 (162)
T d1o9ra_ 7 KNDLPSNAKSTVIGILNESLASVIDLALVTKQAHWNLKGPQFIAVHELLDTFR 59 (162)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeCCChHHHHHhHHHHH
Confidence 3467777766665544 2367777888888776
No 9
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.05 E-value=2.6e+02 Score=19.25 Aligned_cols=56 Identities=23% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHhHhcc-cccc
Q psy6416 82 LTSIRGLLLTLTKFFYAISSSKSSNIIVLVLAQIMGMYFVSSVLLMRMNMPP-EYRSIISKVLGD-LQFN 149 (193)
Q Consensus 82 v~Sir~vL~tl~kfF~~~sss~ssn~ivL~laqlmG~YfiSs~LLiRsnLP~-~~~~~it~vLg~-lef~ 149 (193)
+.-.++||.|+.++-...++..+.++..|+.. ++-.++.+ |...++.+.+-. ++|.
T Consensus 5 v~K~k~FL~tLi~l~~~~~pe~~~~Vr~LV~~------------L~~~~i~~EeF~~~Lq~~lns~pqP~ 62 (107)
T d2pp4a1 5 LSKLKRFLTTLQQYGNDISPEIGERVRTLVLG------------LVNSTLTIEEFHSKLQEATNFPLRPF 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTHHHHHHHHHHH------------HHTTCSCHHHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHH------------HHhCCcCHHHHHHHHHHHhcCCCCCc
Confidence 45578899999998887776667777666654 23334443 446666666653 5554
No 10
>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}
Probab=5.82 E-value=58 Score=22.36 Aligned_cols=12 Identities=42% Similarity=1.118 Sum_probs=8.7
Q ss_pred cccchhhHHHHH
Q psy6416 39 FYIGSRYFHWNI 50 (193)
Q Consensus 39 ~y~~sr~~hw~~ 50 (193)
.|+..+++||++
T Consensus 23 l~~k~~~~HWnv 34 (151)
T d2fjca1 23 LYIKLHNYHWHI 34 (151)
T ss_dssp HHHHHHHHHHHE
T ss_pred HHHHHHhhheee
Confidence 367778888875
Done!