RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6416
         (193 letters)



>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 369

 Score = 28.3 bits (63), Expect = 1.5
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 43  SRYFHWNIVLYCMLFMVIVLIPFYIGYFIVTNIRFGCIVLTSIRGLLLTLTKFFYAISSS 102
             ++  N +  C+L   +  + FY+       +     VL +    LL  ++      ++
Sbjct: 210 PLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRL--PETA 267

Query: 103 KSSNIIVLVLAQIMGMYFVSSVL 125
            +  +I   L  IM +     V 
Sbjct: 268 LAVPLIGKYLMFIMSLVTGVVVN 290


>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 370

 Score = 27.9 bits (62), Expect = 2.2
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 43  SRYFHWNIVLYCMLFMVIVLIPFYIGYFIVTNIRFGCIVLTSIRGLLLTLTKFFYAISSS 102
             ++    ++ C+L  ++ ++ FY+       +      L ++   LL L        +S
Sbjct: 208 PLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKV--PETS 265

Query: 103 KSSNIIVLVLAQIMGMYFVSSVL 125
            S  II+  L  IM +   S +L
Sbjct: 266 LSVPIIISYLMFIMILVAFSVIL 288


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.337    0.148    0.451 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,931,344
Number of extensions: 166035
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 43
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 55 (25.2 bits)