BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6417
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1
Length = 197
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 67/75 (89%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+S+PPTDKVCLWLGANVMLEY++ +A AL++KN+ A KNL +E DLDFLRDQFTTTEV
Sbjct: 115 ASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174
Query: 84 NMARVYNWDVKRRNQ 98
NMARVYNWDVKRRN+
Sbjct: 175 NMARVYNWDVKRRNK 189
>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
Length = 196
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 67/75 (89%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+S+PPTDKVCLWLGANVMLEY++ +A AL++KN+ A KNL +E DLDFLRDQFTTTEV
Sbjct: 114 ASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 173
Query: 84 NMARVYNWDVKRRNQ 98
NMARVYNWDVKRRN+
Sbjct: 174 NMARVYNWDVKRRNK 188
>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1
Length = 197
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 67/75 (89%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+S+PPTDKVCLWLGANVMLEY++ +A AL++KN+ A KNL +E DLDFLRDQFTTTEV
Sbjct: 115 ASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEV 174
Query: 84 NMARVYNWDVKRRNQ 98
NMARVYNWDVKRRN+
Sbjct: 175 NMARVYNWDVKRRNK 189
>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3
Length = 197
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 67/75 (89%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+S+PPTDK+CLWLGANVMLEY++ +A AL++KN+ A KNL +E DLDFLRDQFTTTEV
Sbjct: 115 ASVPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174
Query: 84 NMARVYNWDVKRRNQ 98
NMARVYNWDVKRRN+
Sbjct: 175 NMARVYNWDVKRRNK 189
>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719
PE=3 SV=2
Length = 185
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 56/71 (78%)
Query: 26 IPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNM 85
+PPT V LWLGA+VMLEY L +A AL+ +NI +A NL +EHD DFLRDQ TTTEVNM
Sbjct: 103 VPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNLKSVEHDQDFLRDQITTTEVNM 162
Query: 86 ARVYNWDVKRR 96
ARVYNW VK+R
Sbjct: 163 ARVYNWGVKKR 173
>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510
PE=2 SV=1
Length = 195
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 56/79 (70%)
Query: 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQ 77
E + I TD VCLWLGANVMLEY+ +A+AL++ N+E AK +L + DL FLRDQ
Sbjct: 102 EGIYSRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLENAKASLEVLVADLQFLRDQ 161
Query: 78 FTTTEVNMARVYNWDVKRR 96
T T+V +ARVYNWDV +R
Sbjct: 162 VTVTQVTIARVYNWDVHQR 180
>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAC10 PE=1 SV=1
Length = 199
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 5/110 (4%)
Query: 1 MLEYNLTDATALVQKNIEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAA 60
+L Y L D T + ++ + + + KV LWLGA+VMLEY + +A L++K + +
Sbjct: 94 LLHYQLND-TLYTKAQVDIPEDRADL----KVGLWLGADVMLEYPIDEAIELLKKKLADS 148
Query: 61 KKNLSYIEHDLDFLRDQFTTTEVNMARVYNWDVKRRNQLKMGLEKSNRLR 110
+++L+ D++FLR+ TT EVN AR+YNWDV+RR LK E + L+
Sbjct: 149 EQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQDLKQAQEGTKNLK 198
>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1
Length = 169
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+ + D V LWLGANVMLEY + +A AL+ + + +A++ L + DL+FLR Q TT EV
Sbjct: 92 AEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLNSAEETLKACKEDLEFLRAQVTTMEV 151
Query: 84 NMARVYNWDVKRRNQLKM 101
N ARVYN+ V R + KM
Sbjct: 152 NTARVYNYTVLLRKKTKM 169
>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3
PE=3 SV=1
Length = 195
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%)
Query: 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQ 77
E ++ + + LWLGANVMLEY+ +A +++KN + + LS DL F++DQ
Sbjct: 103 EGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQ 162
Query: 78 FTTTEVNMARVYNWDVKRRNQLKMG 102
TTT+VN++RVYN+D+ ++ +LK+
Sbjct: 163 ITTTDVNVSRVYNYDIIQKRKLKLS 187
>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3
PE=3 SV=1
Length = 185
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%)
Query: 24 SSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83
+++ +KV +WLGANVM+EY+L +A L+ KN + +K + + ++L +++DQ TTTEV
Sbjct: 102 ATVQKPEKVSIWLGANVMVEYDLENARKLLDKNRGSVQKVVDELTNELSYIKDQITTTEV 161
Query: 84 NMARVYNWDVKRR 96
NM+ + N+ V +R
Sbjct: 162 NMSHIVNFGVNKR 174
>sp|Q9Y3D5|RT18C_HUMAN 28S ribosomal protein S18c, mitochondrial OS=Homo sapiens
GN=MRPS18C PE=1 SV=1
Length = 142
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 150 DLKNPFQKEKVVCILCKMKIKPDYKNIKLLSQFVSAFTGRVCI 192
++NP+++ CILC + DYKN++LLSQFVS FTG CI
Sbjct: 53 SMENPYKEPLKKCILCGKHV--DYKNVQLLSQFVSPFTG--CI 91
>sp|P82917|RT18C_BOVIN 28S ribosomal protein S18c, mitochondrial OS=Bos taurus GN=MRPS18C
PE=1 SV=2
Length = 143
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 6/45 (13%)
Query: 148 AEDL----KNPFQKEKVVCILCKMKIKPDYKNIKLLSQFVSAFTG 188
+EDL +NP+++ CILC+ ++ DYKN++LLSQF+S FTG
Sbjct: 48 SEDLPIPMENPYKEPLKKCILCEKRV--DYKNVQLLSQFISPFTG 90
>sp|Q8R2L5|RT18C_MOUSE 28S ribosomal protein S18c, mitochondrial OS=Mus musculus
GN=Mrps18c PE=2 SV=1
Length = 143
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%), Gaps = 2/38 (5%)
Query: 151 LKNPFQKEKVVCILCKMKIKPDYKNIKLLSQFVSAFTG 188
++NP+++ C+LC+ ++ DYKN++LLSQF+S FTG
Sbjct: 55 MENPYKEPLKKCVLCEKRV--DYKNVQLLSQFISPFTG 90
>sp|Q1XHY1|RT18B_PANTR 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes
GN=MRPS18B PE=3 SV=1
Length = 258
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 117 YLSSTRFESKSTNNIYEIDFTLGDPEASNKPAEDLKNPFQKEKVV---CILCK-MKIKPD 172
YL S ++ + + D+ + P K ++ KVV C +C+ K+ D
Sbjct: 58 YLESEEYQERYGSRPVWADYRRNH-KGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVD 116
Query: 173 YKNIKLLSQFVSAFTG 188
++N+KLL QFV A TG
Sbjct: 117 FRNVKLLEQFVCAHTG 132
>sp|Q9Y676|RT18B_HUMAN 28S ribosomal protein S18b, mitochondrial OS=Homo sapiens
GN=MRPS18B PE=1 SV=1
Length = 258
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 117 YLSSTRFESKSTNNIYEIDFTLGDPEASNKPAEDLKNPFQKEKVV---CILCK-MKIKPD 172
YL S ++ + + D+ + P K ++ KVV C +C+ K+ D
Sbjct: 58 YLESEEYQERYGSRPVWADYRRNH-KGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVD 116
Query: 173 YKNIKLLSQFVSAFTG 188
++N+KLL QFV A TG
Sbjct: 117 FRNVKLLEQFVCAHTG 132
>sp|Q1IHW4|RS18_KORVE 30S ribosomal protein S18 OS=Koribacter versatilis (strain
Ellin345) GN=rpsR PE=3 SV=1
Length = 123
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 139 GDPEASNKP-----AEDLKNPFQKEKVVCILCKMKIKP-DYKNIKLLSQFVS 184
G P P D F + K VC C KI DYK+++LL QFV+
Sbjct: 32 GGPRGDRGPRPGGSGRDGGRKFFRRKKVCKFCVEKIDAIDYKDVRLLGQFVA 83
>sp|Q99N84|RT18B_MOUSE 28S ribosomal protein S18b, mitochondrial OS=Mus musculus
GN=Mrps18b PE=2 SV=1
Length = 254
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 162 CILCK-MKIKPDYKNIKLLSQFVSAFTG 188
C +C+ K+ D++N+KLL QFV A TG
Sbjct: 103 CPICRDHKLHVDFRNVKLLEQFVCAHTG 130
>sp|Q767K8|RT18B_PIG 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B
PE=2 SV=1
Length = 258
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 162 CILCK-MKIKPDYKNIKLLSQFVSAFTG 188
C +C+ K+ D++N+KLL QFV A TG
Sbjct: 105 CPICRDQKLHVDFRNVKLLEQFVCAHTG 132
>sp|Q5TM62|RT18B_MACMU 28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta
GN=MRPS18B PE=3 SV=1
Length = 258
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 162 CILCK-MKIKPDYKNIKLLSQFVSAFTG 188
C +C+ K+ D++N+KLL QFV A TG
Sbjct: 105 CPICRDHKLHVDFRNVKLLEQFVCAHTG 132
>sp|P82918|RT18B_BOVIN 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B
PE=1 SV=2
Length = 258
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 162 CILCK-MKIKPDYKNIKLLSQFVSAFTG 188
C +C+ K+ D++N+KLL QFV A TG
Sbjct: 105 CPICRDQKLHVDFRNVKLLKQFVCAHTG 132
>sp|B1H013|RS18_UNCTG 30S ribosomal protein S18 OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=rpsR PE=3 SV=1
Length = 100
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 142 EASNKPAEDLKNPFQKEKVVCILCKMKIKPDYKNIKLLSQFVS 184
+A +PA + K VC C K++ DYKN+ LL FV+
Sbjct: 19 DAYGRPAGKFRRNGPIRKKVCRFCADKVEIDYKNLSLLHTFVT 61
>sp|Q6GJA7|SDRC_STAAR Serine-aspartate repeat-containing protein C OS=Staphylococcus
aureus (strain MRSA252) GN=sdrC PE=3 SV=1
Length = 906
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 152 KNPFQKEKVVCILCKMKIKPDYKNIKLL-----SQFVSAFT 187
KN + KE V L K PD KN K+ +QFV +FT
Sbjct: 358 KNTYTKETFVSTLTGYKFNPDAKNFKIYEVTDQNQFVDSFT 398
>sp|Q8GH81|HRCA_CHLAB Heat-inducible transcription repressor HrcA OS=Chlamydophila
abortus (strain S26/3) GN=hrcA PE=3 SV=1
Length = 386
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 66 YIEHDLDFLRDQFTTTEVNMARVYNWDVKRRNQLKMGLEKSNRL--RQMTRPVYLSSTRF 123
Y++H DFL+D T +++ N K + L+K++ L + P SS RF
Sbjct: 81 YVDHRADFLQDDLPETTIHLL---NQLPKESQNIVKDLQKASELLGEALQLPTCFSSPRF 137
Query: 124 ESKSTNNI 131
E+ S NI
Sbjct: 138 ENDSVTNI 145
>sp|B2KEG0|RS18_ELUMP 30S ribosomal protein S18 OS=Elusimicrobium minutum (strain Pei191)
GN=rpsR PE=3 SV=1
Length = 113
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 142 EASNKPAEDLKNPFQKEKV-----VCILCKMKIK-PDYKNIKLLSQFVSAFT 187
E S +P K PF K++ VC LC KI+ DYKN QF+ +FT
Sbjct: 24 ERSERPERPAKGPFGKKRFESRRKVCKLCAEKIENVDYKNF----QFIKSFT 71
>sp|P92550|M1200_ARATH Uncharacterized mitochondrial protein AtMg01200 OS=Arabidopsis
thaliana GN=AtMg01200 PE=4 SV=1
Length = 294
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 82 EVNMARVYNWDVKRRNQL---KMGLEKSNRLRQMTRPVYLSSTRFESKSTNNIYEID 135
E +AR WD+ R QL + GL++ +RQ L RF+S STN+++E D
Sbjct: 234 EGKVARNRAWDMVRDAQLDIWRQGLDQ-ELVRQQENESRLEERRFQSHSTNSLFEAD 289
>sp|Q8ER55|Y1460_OCEIH UPF0747 protein OB1460 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=OB1460 PE=3
SV=1
Length = 543
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 46 LTDATALVQKNIEA-AKKNLSYIEHDLDFLRDQFTTTEVNMARVYNWDVKRRNQLKMGLE 104
L D +A + +I+A ++ NLSYI +D++FLR + + + Y ++ ++++M L
Sbjct: 444 LRDISASMGDDIKALSESNLSYILNDVEFLRKRLNN---EIRKTYAKEISEFDRMEMILR 500
Query: 105 KSNRLRQ-MTRPVYL 118
+N L++ + P+Y+
Sbjct: 501 PNNGLQERIWNPIYI 515
>sp|Q2NKC1|RS18_AYWBP 30S ribosomal protein S18 OS=Aster yellows witches'-broom
phytoplasma (strain AYWB) GN=rpsR PE=3 SV=1
Length = 79
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 152 KNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRV 190
KN F+K + VC + K+ K D+K+I+LL +F++ GR+
Sbjct: 7 KNTFKKRRKVCFFTENKVTKIDFKDIELLQRFITD-RGRI 45
>sp|Q6YRK3|RS18_ONYPE 30S ribosomal protein S18 OS=Onion yellows phytoplasma (strain
OY-M) GN=rpsR PE=3 SV=1
Length = 79
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 152 KNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRV 190
KN F+K + VC + K+ K D+K+I+LL +F++ GR+
Sbjct: 7 KNTFKKRRKVCFFTENKVTKIDFKDIELLQRFITD-RGRI 45
>sp|A0LAG7|RS18_MAGSM 30S ribosomal protein S18 OS=Magnetococcus sp. (strain MC-1)
GN=rpsR PE=3 SV=1
Length = 106
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 146 KPAEDLKNPFQKEKVVCILCKMK-IKPDYKNIKLLSQFVS 184
+P + PF + + VC C K +K DYK+ K+LS++++
Sbjct: 28 RPLASARRPFFRRRKVCPFCADKGLKIDYKDPKMLSRYIT 67
>sp|B8D7G3|RNB_BUCAT Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain Tuc7) GN=rnb PE=3 SV=1
Length = 649
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 LRQMTRPVYLSSTRFESKSTNNIYEIDFTLGDPEASN-KPAEDLKNPFQKEKVVCILCKM 167
L Q+ + ++ S R E + F DP+ S P +++KN +K++ +L
Sbjct: 8 LTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKIIALLTTE 67
Query: 168 KIKPDYKNIKLLSQFVSAFTGRV 190
K + + KL+ F++ F G++
Sbjct: 68 KDREIVEPEKLIEPFLNRFVGKI 90
>sp|B8D959|RNB_BUCA5 Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain 5A) GN=rnb PE=3 SV=1
Length = 649
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 LRQMTRPVYLSSTRFESKSTNNIYEIDFTLGDPEASN-KPAEDLKNPFQKEKVVCILCKM 167
L Q+ + ++ S R E + F DP+ S P +++KN +K++ +L
Sbjct: 8 LTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKIIALLTTE 67
Query: 168 KIKPDYKNIKLLSQFVSAFTGRV 190
K + + KL+ F++ F G++
Sbjct: 68 KDREIVEPEKLIEPFLNRFVGKI 90
>sp|P57354|RNB_BUCAI Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnb PE=3 SV=1
Length = 649
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 109 LRQMTRPVYLSSTRFESKSTNNIYEIDFTLGDPEASN-KPAEDLKNPFQKEKVVCILCKM 167
L Q+ + ++ S R E + F DP+ S P +++KN +K++ +L
Sbjct: 8 LTQLKKNLHAKSPRVEGIVKSTERGFGFLEVDPQKSYFIPPKNMKNVMHGDKIIALLTTE 67
Query: 168 KIKPDYKNIKLLSQFVSAFTGRV 190
K + + KL+ F++ F G++
Sbjct: 68 KDREIVEPEKLIEPFLNRFVGKI 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,998,068
Number of Sequences: 539616
Number of extensions: 2465333
Number of successful extensions: 7277
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7251
Number of HSP's gapped (non-prelim): 65
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)