Query psy6417
Match_columns 194
No_of_seqs 201 out of 291
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 17:29:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3313|consensus 100.0 2.3E-42 5.1E-47 289.4 9.8 87 17-103 97-183 (187)
2 TIGR00293 prefoldin, archaeal 99.6 6.8E-15 1.5E-19 112.9 6.7 65 17-81 55-119 (126)
3 PRK03947 prefoldin subunit alp 99.5 1E-13 2.2E-18 108.5 7.8 65 17-81 63-127 (140)
4 cd00584 Prefoldin_alpha Prefol 99.5 5.3E-14 1.2E-18 108.3 5.1 73 18-90 57-129 (129)
5 PF02996 Prefoldin: Prefoldin 99.4 2E-13 4.3E-18 102.8 4.9 74 18-91 47-120 (120)
6 cd00890 Prefoldin Prefoldin is 99.3 2.4E-12 5.1E-17 97.4 5.3 74 17-90 56-129 (129)
7 PRK00391 rpsR 30S ribosomal pr 99.2 1.5E-11 3.3E-16 91.8 3.4 41 151-192 6-47 (79)
8 TIGR00165 S18 ribosomal protei 99.1 5.7E-11 1.2E-15 87.0 3.1 37 155-192 1-38 (70)
9 COG0238 RpsR Ribosomal protein 99.0 1.2E-10 2.6E-15 86.7 2.7 40 152-192 8-48 (75)
10 PRK13401 30S ribosomal protein 98.9 4.3E-10 9.3E-15 84.8 2.8 35 157-192 11-46 (82)
11 PRK13400 30S ribosomal protein 98.9 6.9E-10 1.5E-14 91.3 4.0 43 149-192 12-55 (147)
12 CHL00077 rps18 ribosomal prote 98.7 7.1E-09 1.5E-13 78.9 2.7 35 156-192 14-48 (86)
13 KOG3162|consensus 98.7 7.8E-09 1.7E-13 86.0 2.7 46 146-192 53-100 (159)
14 PF01084 Ribosomal_S18: Riboso 98.5 6E-08 1.3E-12 67.6 2.4 27 165-192 1-27 (54)
15 KOG4021|consensus 98.2 3.7E-07 8.1E-12 79.4 1.1 32 160-191 109-141 (239)
16 PRK14011 prefoldin subunit alp 97.6 0.00035 7.7E-09 57.1 7.7 64 18-81 58-121 (144)
17 COG1730 GIM5 Predicted prefold 97.1 0.0025 5.3E-08 52.5 7.3 62 19-80 65-126 (145)
18 PRK01203 prefoldin subunit alp 96.5 0.013 2.8E-07 47.7 7.6 62 18-79 57-118 (130)
19 cd00632 Prefoldin_beta Prefold 94.1 0.036 7.7E-07 42.0 2.2 55 26-81 42-96 (105)
20 KOG3047|consensus 92.6 0.5 1.1E-05 39.5 6.8 61 19-79 76-136 (157)
21 TIGR02338 gimC_beta prefoldin, 92.3 0.037 8.1E-07 42.4 -0.1 60 26-86 46-105 (110)
22 PF01920 Prefoldin_2: Prefoldi 92.3 0.8 1.7E-05 33.4 6.9 56 26-82 41-96 (106)
23 KOG3048|consensus 72.6 12 0.00026 31.7 5.9 55 17-71 70-124 (153)
24 PF07889 DUF1664: Protein of u 64.8 3.3 7.2E-05 33.5 1.1 62 5-88 40-101 (126)
25 PF14354 Lar_restr_allev: Rest 57.9 4.6 9.9E-05 27.3 0.7 11 158-168 2-12 (61)
26 PRK09343 prefoldin subunit bet 55.5 20 0.00044 28.1 4.0 58 27-85 51-108 (121)
27 cd04765 HTH_MlrA-like_sg2 Heli 54.7 16 0.00035 27.5 3.3 37 42-78 57-99 (99)
28 PF08946 Osmo_CC: Osmosensory 51.3 15 0.00032 25.6 2.3 30 45-74 2-31 (46)
29 PF05308 Mito_fiss_reg: Mitoch 45.8 18 0.00038 32.3 2.5 23 58-80 118-140 (253)
30 PF09538 FYDLN_acid: Protein o 45.6 16 0.00034 28.8 2.0 31 157-193 7-38 (108)
31 PF10552 ORF6C: ORF6C domain; 43.3 39 0.00084 26.1 3.8 35 48-82 1-35 (116)
32 PF03470 zf-XS: XS zinc finger 39.2 22 0.00047 24.3 1.6 20 162-181 1-20 (43)
33 PF04423 Rad50_zn_hook: Rad50 39.1 5.6 0.00012 26.8 -1.2 22 161-183 22-43 (54)
34 PF14257 DUF4349: Domain of un 36.7 1E+02 0.0022 26.4 5.8 34 54-87 168-201 (262)
35 PRK09710 lar restriction allev 35.9 14 0.00031 27.1 0.4 11 158-168 5-15 (64)
36 PF09889 DUF2116: Uncharacteri 35.8 10 0.00022 27.2 -0.4 26 158-190 2-27 (59)
37 PF07332 DUF1469: Protein of u 35.1 26 0.00056 26.4 1.7 21 57-77 101-121 (121)
38 PF10779 XhlA: Haemolysin XhlA 34.7 95 0.0021 22.1 4.5 31 46-76 25-55 (71)
39 PF12761 End3: Actin cytoskele 33.5 6.2 0.00013 34.3 -2.1 24 61-84 159-182 (195)
40 TIGR03655 anti_R_Lar restricti 33.1 17 0.00037 24.6 0.4 11 159-169 1-11 (53)
41 KOG2577|consensus 31.9 83 0.0018 29.9 4.7 63 30-92 126-189 (354)
42 KOG3403|consensus 30.8 62 0.0014 27.1 3.3 35 19-53 64-104 (145)
43 PF04697 Pinin_SDK_N: pinin/SD 30.1 63 0.0014 26.9 3.3 26 49-74 4-29 (134)
44 COG4068 Uncharacterized protei 29.0 12 0.00025 27.6 -1.0 28 157-191 6-33 (64)
45 PF00626 Gelsolin: Gelsolin re 29.0 25 0.00055 23.7 0.7 14 26-39 23-36 (76)
46 COG5625 Predicted transcriptio 28.7 13 0.00029 30.0 -0.8 28 84-119 22-49 (113)
47 PF14956 DUF4505: Domain of un 27.5 25 0.00055 30.5 0.6 12 182-193 120-131 (183)
48 PRK07634 pyrroline-5-carboxyla 26.0 78 0.0017 26.1 3.2 38 42-80 195-232 (245)
49 PF02185 HR1: Hr1 repeat; Int 25.7 1.4E+02 0.003 20.9 4.0 23 57-79 35-57 (70)
50 cd00890 Prefoldin Prefoldin is 25.6 1.5E+02 0.0033 22.0 4.5 33 46-78 92-124 (129)
51 PF04102 SlyX: SlyX; InterPro 25.4 2E+02 0.0044 20.4 4.9 36 47-82 17-52 (69)
52 PTZ00431 pyrroline carboxylate 25.4 83 0.0018 26.9 3.3 43 38-80 182-224 (260)
53 KOG3313|consensus 25.4 24 0.00051 30.8 0.0 20 1-20 121-140 (187)
54 PF14169 YdjO: Cold-inducible 25.4 28 0.0006 25.2 0.4 21 149-169 29-49 (59)
55 PF10805 DUF2730: Protein of u 25.1 34 0.00074 26.3 0.8 44 44-87 31-76 (106)
56 TIGR03847 conserved hypothetic 24.8 36 0.00079 29.4 1.0 13 159-171 156-168 (177)
57 PF13920 zf-C3HC4_3: Zinc fing 24.6 29 0.00063 22.6 0.3 12 158-169 36-47 (50)
58 PF08184 Cuticle_2: Cuticle pr 24.4 31 0.00067 24.7 0.4 12 181-192 17-28 (59)
59 PF11290 DUF3090: Protein of u 23.9 39 0.00084 29.0 1.0 12 159-170 154-165 (171)
60 PRK06228 F0F1 ATP synthase sub 23.8 1.3E+02 0.0028 24.2 4.0 35 45-79 88-122 (131)
61 PRK11087 oxidative stress defe 23.4 2.3E+02 0.005 24.2 5.7 71 17-92 24-95 (231)
62 cd01109 HTH_YyaN Helix-Turn-He 23.4 1.8E+02 0.004 21.8 4.6 30 47-76 78-107 (113)
63 PF02388 FemAB: FemAB family; 23.4 1.5E+02 0.0032 27.5 4.8 33 40-72 234-266 (406)
64 TIGR00112 proC pyrroline-5-car 22.8 1E+02 0.0022 26.2 3.4 42 39-80 170-211 (245)
65 PF11853 DUF3373: Protein of u 22.8 64 0.0014 31.7 2.4 33 50-83 27-59 (489)
66 PF14748 P5CR_dimer: Pyrroline 22.6 98 0.0021 23.5 2.9 39 42-80 34-72 (107)
67 smart00742 Hr1 Rho effector or 21.7 1.3E+02 0.0027 20.5 3.1 24 55-78 32-55 (57)
68 COG1902 NemA NADH:flavin oxido 21.6 46 0.00099 31.0 1.1 47 143-189 139-186 (363)
69 PRK13182 racA polar chromosome 21.1 1.9E+02 0.0042 24.4 4.6 36 45-80 82-117 (175)
70 PF08285 DPM3: Dolichol-phosph 20.9 97 0.0021 23.7 2.6 30 37-66 57-86 (91)
71 PF13758 Prefoldin_3: Prefoldi 20.8 2E+02 0.0043 22.8 4.3 43 30-72 50-92 (99)
72 KOG4098|consensus 20.3 1.4E+02 0.003 25.1 3.5 51 28-79 60-110 (140)
73 KOG2878|consensus 20.1 66 0.0014 29.4 1.8 75 39-113 159-239 (282)
74 PRK07680 late competence prote 20.1 1.2E+02 0.0026 25.8 3.3 39 43-81 192-230 (273)
No 1
>KOG3313|consensus
Probab=100.00 E-value=2.3e-42 Score=289.41 Aligned_cols=87 Identities=62% Similarity=0.963 Sum_probs=84.4
Q ss_pred cccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeeehhhHHhh
Q psy6417 17 IEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVYNWDVKRR 96 (194)
Q Consensus 17 ~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvYNwdV~rr 96 (194)
+|+||+||+|||+++|||||||||||||++|||++||++||.+|+++++.+++||+|||||||||||||||||||||++|
T Consensus 97 sd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~ArvYNw~V~~R 176 (187)
T KOG3313|consen 97 SDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMARVYNWDVKKR 176 (187)
T ss_pred cccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeeeeeeechHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy6417 97 NQLKMGL 103 (194)
Q Consensus 97 r~~k~~~ 103 (194)
|+.+...
T Consensus 177 ~~~~~t~ 183 (187)
T KOG3313|consen 177 RAAKATN 183 (187)
T ss_pred HHHhhcc
Confidence 9887654
No 2
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.56 E-value=6.8e-15 Score=112.89 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=62.4
Q ss_pred cccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 17 IEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 17 ~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
..++|.+|.|+++++|++|||+|+|+|++++||+++|+++++.+.++++.+++++.|+++|++..
T Consensus 55 g~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 55 GAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred CCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999874
No 3
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.48 E-value=1e-13 Score=108.49 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=62.0
Q ss_pred cccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 17 IEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 17 ~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
..++|.+|.|+++++|++|||+|||+||+++||+++|+++++.+.++++.+++++.++++|+.-.
T Consensus 63 g~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 63 GAGSFVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred CCCcEEEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999998644
No 4
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.47 E-value=5.3e-14 Score=108.32 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=70.2
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeeeh
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVYN 90 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvYN 90 (194)
.++|.+|.|+++++|++|+|+|+|+|++++||+++|+++++..+++++.+++++..+++|++.++.+++++|.
T Consensus 57 ~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~ 129 (129)
T cd00584 57 AGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ 129 (129)
T ss_pred CCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999998763
No 5
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.42 E-value=2e-13 Score=102.83 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=71.1
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeeehh
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVYNW 91 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvYNw 91 (194)
.++|.+|.|+++++|.+|||+|+++|.+++||+++|+++++..+..++.+.+++..++++++.++-.++++|+|
T Consensus 47 ~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 120 (120)
T PF02996_consen 47 SGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQQ 120 (120)
T ss_dssp TTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999987
No 6
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.31 E-value=2.4e-12 Score=97.39 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=70.6
Q ss_pred cccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeeeh
Q psy6417 17 IEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVYN 90 (194)
Q Consensus 17 ~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvYN 90 (194)
..++|.+|.|+++++|++|+|+|+++|++++||+++|+++++..+++++.++++++.+++|++.++.+|+++|+
T Consensus 56 g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 129 (129)
T cd00890 56 GAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQQ 129 (129)
T ss_pred CCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999888763
No 7
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=99.18 E-value=1.5e-11 Score=91.79 Aligned_cols=41 Identities=37% Similarity=0.717 Sum_probs=36.1
Q ss_pred cCCCcccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 151 LKNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 151 ~~~Py~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
..+++.++++.|+||..++ .||||||+||+||||+ +|+|+.
T Consensus 6 ~~~~~~~r~k~c~~c~~~~~~iDYKnv~lL~~Fis~-~GkIlp 47 (79)
T PRK00391 6 ARRRFFRRKKVCRFCAEKIEYIDYKDVELLKKFISE-RGKILP 47 (79)
T ss_pred cccccCCCCCCCcccCCCCCcCCccCHHHHHHhcCC-CceEcC
Confidence 4566778889999999886 6999999999999999 799984
No 8
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=99.09 E-value=5.7e-11 Score=86.96 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=32.2
Q ss_pred cccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 155 FQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 155 y~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
|.++++.||+|..++ .||||||+||+||||++ |+|+.
T Consensus 1 ~~~r~k~c~~~~~~~~~iDYKnv~lL~~Fis~~-GkIlp 38 (70)
T TIGR00165 1 YFRRKKYCRFTAEGIQFIDYKDLDLLKKFISER-GKILP 38 (70)
T ss_pred CCCCCCCCCccCCCCCcCCccCHHHHHHhcCCC-CeEcC
Confidence 556778999999765 69999999999999995 99974
No 9
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.2e-10 Score=86.71 Aligned_cols=40 Identities=33% Similarity=0.698 Sum_probs=35.4
Q ss_pred CCCcccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 152 KNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 152 ~~Py~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
.+|+++++|.|+||..++ .|||||+++|++|||+ +|+|..
T Consensus 8 r~~~~rrrk~c~~~~~~~~~iDYKd~~~L~rfise-~GKI~p 48 (75)
T COG0238 8 RAPFFRRRKVCRFTAEGIEEIDYKDVELLKRFISE-RGKILP 48 (75)
T ss_pred cccccccccccccccccCCccCccCHHHHHHHhcc-cCcccc
Confidence 456888999999999987 5999999999999999 699963
No 10
>PRK13401 30S ribosomal protein S18; Provisional
Probab=98.95 E-value=4.3e-10 Score=84.84 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=30.9
Q ss_pred cCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 157 KEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 157 k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
++++.|+||..++ .||||||+||+||||+ +|+|+.
T Consensus 11 ~r~k~c~~~~~~~~~iDYKnv~lL~~Fis~-~GkIlp 46 (82)
T PRK13401 11 TKAKKNLLDSLGIESVDYKDTALLRTFISD-RGKIRS 46 (82)
T ss_pred CCCCCCCcccCCCCcCCccCHHHHHHhcCC-CccCcC
Confidence 3457999999887 5999999999999999 899974
No 11
>PRK13400 30S ribosomal protein S18; Provisional
Probab=98.94 E-value=6.9e-10 Score=91.29 Aligned_cols=43 Identities=21% Similarity=0.560 Sum_probs=36.5
Q ss_pred cccCCCcccCCceeeecCCCC-CCCCCCHHHHHhhccCCccceee
Q psy6417 149 EDLKNPFQKEKVVCILCKMKI-KPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 149 ~~~~~Py~k~~k~C~lC~~~i-~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
-...+.|++++|.|+||..++ .||||||+||++|||+ +|+|+.
T Consensus 12 ~~gr~~~~~RrK~C~~c~~~~~~IDYKNv~lL~~FISe-~GKIlP 55 (147)
T PRK13400 12 RGGRGRYTPKRKICSFCAEKVSRIDYKDSAKLARYISD-RGKIEP 55 (147)
T ss_pred cCCCCccCCCCCCCCccCCCCCccCCcCHHHHHHhcCc-CccCcC
Confidence 344567778889999999764 6999999999999999 799974
No 12
>CHL00077 rps18 ribosomal protein S18
Probab=98.71 E-value=7.1e-09 Score=78.90 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=30.3
Q ss_pred ccCCceeeecCCCCCCCCCCHHHHHhhccCCccceee
Q psy6417 156 QKEKVVCILCKMKIKPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 156 ~k~~k~C~lC~~~i~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
.++++.|++|.. ..||||||+||+||||+ +|+|+.
T Consensus 14 ~~rrk~~~~~~~-~~iDYKnv~lL~~Fis~-~GkIlp 48 (86)
T CHL00077 14 SFRRRLPPIQSG-DRIDYKNMSLLSRFISE-QGKILS 48 (86)
T ss_pred hcccCCCCCCCC-CcCCccCHHHHHHhcCC-CCeEcC
Confidence 345678999997 46999999999999999 799985
No 13
>KOG3162|consensus
Probab=98.70 E-value=7.8e-09 Score=85.98 Aligned_cols=46 Identities=39% Similarity=0.558 Sum_probs=40.1
Q ss_pred CCccccCCCcccCCceeeecCCCCC--CCCCCHHHHHhhccCCccceee
Q psy6417 146 KPAEDLKNPFQKEKVVCILCKMKIK--PDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 146 ~p~~~~~~Py~k~~k~C~lC~~~i~--iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
+++...+||+++..++|++|..+|+ .+||||.||+|||+|++| ||.
T Consensus 53 e~~~~~~n~~~~~~~~c~~c~~~Vd~~~~yknv~iLsqFv~~~G~-il~ 100 (159)
T KOG3162|consen 53 ELPIASNNPEKKSEPQCILCTKGVDIKLSYKNVLLLSQFVSEDGG-ILP 100 (159)
T ss_pred hhhhhcCCCcccCcccCcccccCCCcccccCccchhhhhcccccc-eec
Confidence 3478999999999899999999875 469999999999999866 874
No 14
>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....
Probab=98.50 E-value=6e-08 Score=67.64 Aligned_cols=27 Identities=48% Similarity=0.785 Sum_probs=23.9
Q ss_pred cCCCCCCCCCCHHHHHhhccCCccceee
Q psy6417 165 CKMKIKPDYKNIKLLSQFVSAFTGRVCI 192 (194)
Q Consensus 165 C~~~i~iDYKNV~LLsqFiS~~tG~I~~ 192 (194)
|..+..||||||+||+||||| +|+|+.
T Consensus 1 ~~~~~~idykn~~lL~~Fi~~-~GkIl~ 27 (54)
T PF01084_consen 1 CNNNEYIDYKNVELLSQFISP-TGKILP 27 (54)
T ss_dssp -SSSSSSSSSSHHHHGCGBTT-SSSBST
T ss_pred CCCCCcCCcCCHHHHHHHcCc-ccceeh
Confidence 666778999999999999999 899985
No 15
>KOG4021|consensus
Probab=98.22 E-value=3.7e-07 Score=79.43 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=28.6
Q ss_pred ceeeecCC-CCCCCCCCHHHHHhhccCCcccee
Q psy6417 160 VVCILCKM-KIKPDYKNIKLLSQFVSAFTGRVC 191 (194)
Q Consensus 160 k~C~lC~~-~i~iDYKNV~LLsqFiS~~tG~I~ 191 (194)
..||+|++ ++.+||+|++||.||+++|||.|.
T Consensus 109 npCPICRDeyL~~DyRN~~LlEQF~~~htg~~i 141 (239)
T KOG4021|consen 109 NPCPICRDEYLYFDYRNPGLLEQFLADHTGQPI 141 (239)
T ss_pred CCCCccccceEEEeccCHHHHHHHhccCCCCch
Confidence 57899995 689999999999999999999664
No 16
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.56 E-value=0.00035 Score=57.06 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=60.4
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
.++|.+|.|.++|+|.+=+|+++-+|-+++||+++|+++++..+++.+.+.+.|+=+.+++...
T Consensus 58 ~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l 121 (144)
T PRK14011 58 PGAFLKAKIVDPDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKL 121 (144)
T ss_pred CCcEEeEEecCCCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999888754
No 17
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0025 Score=52.49 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred cceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 19 AAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 19 ~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
++|.+|.|...|+|-.=+|+++-+|=+++||++.|+++++...++++.+++-|+=|-.+++.
T Consensus 65 g~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~ 126 (145)
T COG1730 65 GLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126 (145)
T ss_pred CceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999888777664
No 18
>PRK01203 prefoldin subunit alpha; Provisional
Probab=96.53 E-value=0.013 Score=47.68 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=57.4
Q ss_pred ccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy6417 18 EAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFT 79 (194)
Q Consensus 18 d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQIT 79 (194)
.++|.+|.|.++++|-+=+|+++-+|=++++|+++|+++++..+..+....+.++=|-+|+-
T Consensus 57 ~slYV~gki~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~ 118 (130)
T PRK01203 57 SGIFADGNIKKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYN 118 (130)
T ss_pred CCceEeEEecCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999998888888877753
No 19
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=94.10 E-value=0.036 Score=41.99 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=47.3
Q ss_pred cCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 26 IPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 26 I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
++|..+||.-+|. |+++.+.+||...|+++++..+..++.++..++.+.+++.-.
T Consensus 42 l~~d~~vy~~VG~-vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 42 LADDAEVYKLVGN-VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred CCCcchHHHHhhh-HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667666664 999999999999999999999999999999999999987643
No 20
>KOG3047|consensus
Probab=92.60 E-value=0.5 Score=39.55 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=50.6
Q ss_pred cceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy6417 19 AAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFT 79 (194)
Q Consensus 19 ~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQIT 79 (194)
++|-...||.|..|++-||-++.||..+.||+++...+.+..+.-.+.+..|--=|+--|+
T Consensus 76 nfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel~ekLqKdsmkiKa~ih 136 (157)
T KOG3047|consen 76 NFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKELMEKLQKDSMKIKADIH 136 (157)
T ss_pred eeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5788889999999999999999999999999999888887777766666666555555544
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=92.31 E-value=0.037 Score=42.37 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=50.4
Q ss_pred cCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeee
Q psy6417 26 IPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMA 86 (194)
Q Consensus 26 I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~A 86 (194)
+|+..+||-=+|. |+++-+.+||..-|+++++..+..++.+++.+++|+.++.-++=++.
T Consensus 46 l~~d~~vyk~VG~-vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 46 LPDDTPVYKSVGN-LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred CCCcchhHHHhch-hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666665 99999999999999999999999999999999999999876554443
No 22
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=92.28 E-value=0.8 Score=33.36 Aligned_cols=56 Identities=18% Similarity=0.359 Sum_probs=46.5
Q ss_pred cCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeE
Q psy6417 26 IPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTE 82 (194)
Q Consensus 26 I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtE 82 (194)
+|+..+||.=+| ++.++.+.+|+.+-|++.++.++..++.++.-+.++.+++.-.+
T Consensus 41 l~~~~~~y~~vG-~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 41 LDDDRKVYKSVG-KMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp SSTT-EEEEEET-TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHh-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665554 58999999999999999999999999999999999999886544
No 23
>KOG3048|consensus
Probab=72.60 E-value=12 Score=31.65 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=49.7
Q ss_pred cccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6417 17 IEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDL 71 (194)
Q Consensus 17 ~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDL 71 (194)
...+|..+.+...+++.+=+|-+--+|=+.|+|++..+.+.+-.+++.++++.=+
T Consensus 70 TsSlYVPGkl~d~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~ 124 (153)
T KOG3048|consen 70 TSSLYVPGKLSDNSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGIL 124 (153)
T ss_pred ccceeccceeccccceeEeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999998888887543
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=64.84 E-value=3.3 Score=33.55 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=50.4
Q ss_pred ccchhhHHHhhccccceeeeecCCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEe
Q psy6417 5 NLTDATALVQKNIEAAKKNSSIPPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVN 84 (194)
Q Consensus 5 ~~~~~~~~~~~~~d~lyakA~I~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN 84 (194)
||+||.+.|-|..|.|+.. +..|++.|.++|+....+++++.+=.+=++++++.+--+
T Consensus 40 ~m~~A~~~v~kql~~vs~~----------------------l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~d 97 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSES----------------------LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRED 97 (126)
T ss_pred hHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999988764 678888888888888888888888888888888776666
Q ss_pred eeee
Q psy6417 85 MARV 88 (194)
Q Consensus 85 ~ARv 88 (194)
++++
T Consensus 98 v~~i 101 (126)
T PF07889_consen 98 VSQI 101 (126)
T ss_pred HHHH
Confidence 6654
No 25
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=57.89 E-value=4.6 Score=27.35 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=8.7
Q ss_pred CCceeeecCCC
Q psy6417 158 EKVVCILCKMK 168 (194)
Q Consensus 158 ~~k~C~lC~~~ 168 (194)
+.|.||||+..
T Consensus 2 ~LkPCPFCG~~ 12 (61)
T PF14354_consen 2 ELKPCPFCGSA 12 (61)
T ss_pred CCcCCCCCCCc
Confidence 46899999854
No 26
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.52 E-value=20 Score=28.14 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=48.0
Q ss_pred CCCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEee
Q psy6417 27 PPTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNM 85 (194)
Q Consensus 27 ~p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ 85 (194)
|+..+||-=+| .|+|-=+.+||.+=|+++++..+..++.++...++|++++.-.+-++
T Consensus 51 ~~d~~VYk~VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 51 PDDTPIYKIVG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred CCcchhHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666555 47777799999999999999999999999999999999987655443
No 27
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.67 E-value=16 Score=27.54 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=31.2
Q ss_pred eeechHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHhcc
Q psy6417 42 LEYNLTDATALVQKNIE------AAKKNLSYIEHDLDFLRDQF 78 (194)
Q Consensus 42 LEY~ldEA~~LL~~nL~------~A~~~l~~~eeDLdFLRdQI 78 (194)
.-|+++++.++|...-. .+...+.++..+|.=||+|+
T Consensus 57 ~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 57 KGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLRDQL 99 (99)
T ss_pred CCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 36899999999987544 48899999999999999986
No 28
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=51.29 E-value=15 Score=25.59 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6417 45 NLTDATALVQKNIEAAKKNLSYIEHDLDFL 74 (194)
Q Consensus 45 ~ldEA~~LL~~nL~~A~~~l~~~eeDLdFL 74 (194)
+..||++||.....+.++.++.+.+.+.=|
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeL 31 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAEL 31 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHH
Confidence 457999999999998888888877665444
No 29
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=45.78 E-value=18 Score=32.34 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHhccce
Q psy6417 58 EAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 58 ~~A~~~l~~~eeDLdFLRdQITT 80 (194)
+.|-+.+..+|++|.+||.||-.
T Consensus 118 ~~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 118 EAALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999974
No 30
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=45.62 E-value=16 Score=28.82 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=19.6
Q ss_pred cCCceeeecCCCCC-CCCCCHHHHHhhccCCccceeec
Q psy6417 157 KEKVVCILCKMKIK-PDYKNIKLLSQFVSAFTGRVCIM 193 (194)
Q Consensus 157 k~~k~C~lC~~~i~-iDYKNV~LLsqFiS~~tG~I~~~ 193 (194)
-.++.||-|+.+.+ ++= + =-+||++|.+|.+
T Consensus 7 GtKR~Cp~CG~kFYDLnk-~-----PivCP~CG~~~~~ 38 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLNK-D-----PIVCPKCGTEFPP 38 (108)
T ss_pred CCcccCCCCcchhccCCC-C-----CccCCCCCCccCc
Confidence 35678888887642 221 1 1368888888764
No 31
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=43.27 E-value=39 Score=26.09 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeE
Q psy6417 48 DATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTE 82 (194)
Q Consensus 48 EA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtE 82 (194)
|++.|+-+......+.+..++.+++-|++.+++..
T Consensus 1 ~~i~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~ 35 (116)
T PF10552_consen 1 QQIKLLMQATEEHNEKIEEVENRVDDLEENMPIDP 35 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 57788888999999999999999999999998754
No 32
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=39.16 E-value=22 Score=24.33 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=14.7
Q ss_pred eeecCCCCCCCCCCHHHHHh
Q psy6417 162 CILCKMKIKPDYKNIKLLSQ 181 (194)
Q Consensus 162 C~lC~~~i~iDYKNV~LLsq 181 (194)
||+|..+-.=||+=-+||+.
T Consensus 1 CP~C~~kkk~~Y~~~~LlqH 20 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQH 20 (43)
T ss_pred CCCCCCCCCcceehhHHHHH
Confidence 99999755557996666664
No 33
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=39.12 E-value=5.6 Score=26.83 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=12.7
Q ss_pred eeeecCCCCCCCCCCHHHHHhhc
Q psy6417 161 VCILCKMKIKPDYKNIKLLSQFV 183 (194)
Q Consensus 161 ~C~lC~~~i~iDYKNV~LLsqFi 183 (194)
.||+|+..+.-+-+ -+|++++-
T Consensus 22 ~CPlC~r~l~~e~~-~~li~~~~ 43 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR-QELIKKYK 43 (54)
T ss_dssp E-TTT--EE-HHHH-HHHHHHHH
T ss_pred cCCCCCCCCCHHHH-HHHHHHHH
Confidence 89999988766666 66666553
No 34
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.74 E-value=1e+02 Score=26.41 Aligned_cols=34 Identities=12% Similarity=0.421 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccceeEEeeee
Q psy6417 54 QKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMAR 87 (194)
Q Consensus 54 ~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~AR 87 (194)
+..|...+..++.++-.+.+|.+|+..-.||+.=
T Consensus 168 e~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 168 ERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 6677788888888888888999999888888754
No 35
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=35.89 E-value=14 Score=27.11 Aligned_cols=11 Identities=18% Similarity=0.470 Sum_probs=9.1
Q ss_pred CCceeeecCCC
Q psy6417 158 EKVVCILCKMK 168 (194)
Q Consensus 158 ~~k~C~lC~~~ 168 (194)
-.|+||||+.+
T Consensus 5 ~lKPCPFCG~~ 15 (64)
T PRK09710 5 NVKPCPFCGCP 15 (64)
T ss_pred cccCCCCCCCc
Confidence 45899999976
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.79 E-value=10 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.0
Q ss_pred CCceeeecCCCCCCCCCCHHHHHhhccCCccce
Q psy6417 158 EKVVCILCKMKIKPDYKNIKLLSQFVSAFTGRV 190 (194)
Q Consensus 158 ~~k~C~lC~~~i~iDYKNV~LLsqFiS~~tG~I 190 (194)
+-|-||.|+..|..| +.|.|+.=+..
T Consensus 2 ~HkHC~~CG~~Ip~~-------~~fCS~~C~~~ 27 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD-------ESFCSPKCREE 27 (59)
T ss_pred CCCcCCcCCCcCCcc-------hhhhCHHHHHH
Confidence 457899999888766 56666544333
No 37
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=35.10 E-value=26 Score=26.43 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhc
Q psy6417 57 IEAAKKNLSYIEHDLDFLRDQ 77 (194)
Q Consensus 57 L~~A~~~l~~~eeDLdFLRdQ 77 (194)
-..-.+..+++++|.+|||||
T Consensus 101 ~~~~~~t~~~l~~d~~~lk~~ 121 (121)
T PF07332_consen 101 PPPFEETIAELKEDIAALKER 121 (121)
T ss_pred CCCHHHHHHHHHHHHHHhhcC
Confidence 344567889999999999987
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.72 E-value=95 Score=22.09 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6417 46 LTDATALVQKNIEAAKKNLSYIEHDLDFLRD 76 (194)
Q Consensus 46 ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRd 76 (194)
+|.+.+.++..++++..+++.+++.+-|+.-
T Consensus 25 lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 25 LEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777777777654
No 39
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=33.53 E-value=6.2 Score=34.33 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHhccceeEEe
Q psy6417 61 KKNLSYIEHDLDFLRDQFTTTEVN 84 (194)
Q Consensus 61 ~~~l~~~eeDLdFLRdQITTtEVN 84 (194)
..++..+.+||+=+++|++..|--
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988743
No 40
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=33.07 E-value=17 Score=24.56 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=8.5
Q ss_pred CceeeecCCCC
Q psy6417 159 KVVCILCKMKI 169 (194)
Q Consensus 159 ~k~C~lC~~~i 169 (194)
.|+||||+.+.
T Consensus 1 LkPCPfCGg~~ 11 (53)
T TIGR03655 1 LKPCPFCGGAD 11 (53)
T ss_pred CCCCCCCCCcc
Confidence 37899999653
No 41
>KOG2577|consensus
Probab=31.91 E-value=83 Score=29.85 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=41.7
Q ss_pred CeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce-eEEeeeeeehhh
Q psy6417 30 DKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT-TEVNMARVYNWD 92 (194)
Q Consensus 30 d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT-tEVN~ARvYNwd 92 (194)
+.---|.|.+.|--=...|=...|+..++.....-+.+++=+.|+.+++-- ||--..|-|+|-
T Consensus 126 KN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYV 189 (354)
T KOG2577|consen 126 KNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYV 189 (354)
T ss_pred ccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceee
Confidence 445679999999755556666777777777777777777777777777643 233333445553
No 42
>KOG3403|consensus
Probab=30.80 E-value=62 Score=27.07 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=27.2
Q ss_pred cceeeeecCCCCeEEEEec------cceeeeechHHHHHHH
Q psy6417 19 AAKKNSSIPPTDKVCLWLG------ANVMLEYNLTDATALV 53 (194)
Q Consensus 19 ~lyakA~I~p~d~V~LWLG------ANVMLEY~ldEA~~LL 53 (194)
.+|-++.|.+.|-|.|=|- |+|.+-|..+||.-|=
T Consensus 64 klrkkVwi~~GDIiLv~lRD~qd~kaDvilKY~~dEar~LK 104 (145)
T KOG3403|consen 64 KLRKKVWINQGDIILVGLRDYQDDKADVILKYMPDEARILK 104 (145)
T ss_pred cceeeEeecCCCEEEEeeecccccccceehhhChHHHHHHH
Confidence 3566777777777766664 8999999999998773
No 43
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=30.07 E-value=63 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6417 49 ATALVQKNIEAAKKNLSYIEHDLDFL 74 (194)
Q Consensus 49 A~~LL~~nL~~A~~~l~~~eeDLdFL 74 (194)
|..-|+++|+.|+.+|+.+.+++-=|
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKl 29 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKL 29 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 66789999999999999999998766
No 44
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=29.02 E-value=12 Score=27.63 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=20.8
Q ss_pred cCCceeeecCCCCCCCCCCHHHHHhhccCCcccee
Q psy6417 157 KEKVVCILCKMKIKPDYKNIKLLSQFVSAFTGRVC 191 (194)
Q Consensus 157 k~~k~C~lC~~~i~iDYKNV~LLsqFiS~~tG~I~ 191 (194)
.|-+-|+.|++.|..| +||.|+.-|.|+
T Consensus 6 ~PH~HC~VCg~aIp~d-------e~~CSe~C~eil 33 (64)
T COG4068 6 VPHRHCVVCGKAIPPD-------EQVCSEECGEIL 33 (64)
T ss_pred CCCccccccCCcCCCc-------cchHHHHHHHHH
Confidence 3557899999988888 567777666554
No 45
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=29.02 E-value=25 Score=23.73 Aligned_cols=14 Identities=14% Similarity=0.558 Sum_probs=11.2
Q ss_pred cCCCCeEEEEeccc
Q psy6417 26 IPPTDKVCLWLGAN 39 (194)
Q Consensus 26 I~p~d~V~LWLGAN 39 (194)
+.....+++|+|.+
T Consensus 23 ld~~~~i~vW~G~~ 36 (76)
T PF00626_consen 23 LDCGYEIFVWVGKK 36 (76)
T ss_dssp EEESSEEEEEEHTT
T ss_pred EEeCCCcEEEEecc
Confidence 34456999999999
No 46
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=28.72 E-value=13 Score=29.97 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.1
Q ss_pred eeeeeehhhHHhhhhhhhcccccchhhhccccceee
Q psy6417 84 NMARVYNWDVKRRNQLKMGLEKSNRLRQMTRPVYLS 119 (194)
Q Consensus 84 N~ARvYNwdV~rrr~~k~~~~~~~~~~~~~~~~~i~ 119 (194)
|=-|+|+|=|.+++ +||++...|.++||
T Consensus 22 ~eI~IY~lLve~~~--------~mri~ei~rEl~is 49 (113)
T COG5625 22 NEIRIYSLLVEKGR--------GMRIREIQRELGIS 49 (113)
T ss_pred chhhhhhHHHHhcC--------CchHHHHHHHHhHH
Confidence 44689999999876 79999999999995
No 47
>PF14956 DUF4505: Domain of unknown function (DUF4505)
Probab=27.50 E-value=25 Score=30.48 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=10.4
Q ss_pred hccCCccceeec
Q psy6417 182 FVSAFTGRVCIM 193 (194)
Q Consensus 182 FiS~~tG~I~~~ 193 (194)
+|.|.|||||||
T Consensus 120 ~m~~~sGRvYHP 131 (183)
T PF14956_consen 120 CMDPSSGRVYHP 131 (183)
T ss_pred EEcCCCCcEecc
Confidence 577889999998
No 48
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.05 E-value=78 Score=26.06 Aligned_cols=38 Identities=29% Similarity=0.256 Sum_probs=32.1
Q ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 42 LEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 42 LEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
.-++-++|.+++..-+..+-+.+++ ..+.+-|+|+++|
T Consensus 195 ~Gl~~~~a~~~~~~~~~g~~~~~~~-~~~~~~l~~~v~s 232 (245)
T PRK07634 195 YGVDEETAKHLVIQMISGSASMLEQ-TQDPANLREQVTT 232 (245)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHhCCC
Confidence 3468899999999999988888876 4789999999986
No 49
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=25.67 E-value=1.4e+02 Score=20.91 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhccc
Q psy6417 57 IEAAKKNLSYIEHDLDFLRDQFT 79 (194)
Q Consensus 57 L~~A~~~l~~~eeDLdFLRdQIT 79 (194)
+..|...+.....-+++|++++-
T Consensus 35 ~~~~~~~l~~s~~kI~~L~~~L~ 57 (70)
T PF02185_consen 35 LSEAESQLRESNQKIELLREQLE 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888763
No 50
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.59 E-value=1.5e+02 Score=22.04 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc
Q psy6417 46 LTDATALVQKNIEAAKKNLSYIEHDLDFLRDQF 78 (194)
Q Consensus 46 ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQI 78 (194)
+++.++.|+++++..+++++.+...++-|+.++
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777666654
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=25.44 E-value=2e+02 Score=20.43 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeE
Q psy6417 47 TDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTE 82 (194)
Q Consensus 47 dEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtE 82 (194)
++.++=|++-+..-.+.++.+++.+..|++++..++
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666777777777888888888888888887654
No 52
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=25.41 E-value=83 Score=26.91 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=37.4
Q ss_pred cceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 38 ANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 38 ANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
|-|-.-.+-++|.++..+-+..+-+-+.+-..+.+-|||+++|
T Consensus 182 ~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~s 224 (260)
T PTZ00431 182 AGVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCS 224 (260)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCC
Confidence 3445568999999999999999999988888899999999986
No 53
>KOG3313|consensus
Probab=25.41 E-value=24 Score=30.80 Aligned_cols=20 Identities=55% Similarity=0.895 Sum_probs=18.3
Q ss_pred CcccccchhhHHHhhccccc
Q psy6417 1 MLEYNLTDATALVQKNIEAA 20 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~d~l 20 (194)
||||.+..|.||+.||+.++
T Consensus 121 MlEY~leEAeaLLkknl~sa 140 (187)
T KOG3313|consen 121 MLEYDLEEAEALLKKNLTSA 140 (187)
T ss_pred EEEecHHHHHHHHHhhHHHH
Confidence 89999999999999998765
No 54
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=25.37 E-value=28 Score=25.17 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=15.1
Q ss_pred cccCCCcccCCceeeecCCCC
Q psy6417 149 EDLKNPFQKEKVVCILCKMKI 169 (194)
Q Consensus 149 ~~~~~Py~k~~k~C~lC~~~i 169 (194)
=.++|.-......||||...-
T Consensus 29 WmR~nFs~~~~p~CPlC~s~M 49 (59)
T PF14169_consen 29 WMRDNFSFEEEPVCPLCKSPM 49 (59)
T ss_pred ccccccccCCCccCCCcCCcc
Confidence 345666667778999999653
No 55
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.14 E-value=34 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=37.3
Q ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhccceeEEeeee
Q psy6417 44 YNLTDATALVQKNIEAAKKNLSYIEHDLDFL--RDQFTTTEVNMAR 87 (194)
Q Consensus 44 Y~ldEA~~LL~~nL~~A~~~l~~~eeDLdFL--RdQITTtEVN~AR 87 (194)
|--.|..+-|.+.++.....+..+|.+++-| ++.++-.++-|++
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~e 76 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAE 76 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6667888889999999999999999999999 8888877766664
No 56
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=24.79 E-value=36 Score=29.43 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.1
Q ss_pred CceeeecCCCCCC
Q psy6417 159 KVVCILCKMKIKP 171 (194)
Q Consensus 159 ~k~C~lC~~~i~i 171 (194)
|..||+|+..+..
T Consensus 156 RP~CPlCg~PldP 168 (177)
T TIGR03847 156 RPPCPLCGRPIDP 168 (177)
T ss_pred CCCCCCCCCCCCC
Confidence 5689999988643
No 57
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=24.64 E-value=29 Score=22.56 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=9.3
Q ss_pred CCceeeecCCCC
Q psy6417 158 EKVVCILCKMKI 169 (194)
Q Consensus 158 ~~k~C~lC~~~i 169 (194)
..++||+|+..|
T Consensus 36 ~~~~CP~Cr~~i 47 (50)
T PF13920_consen 36 RKKKCPICRQPI 47 (50)
T ss_dssp TTSBBTTTTBB-
T ss_pred cCCCCCcCChhh
Confidence 568999999765
No 58
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=24.37 E-value=31 Score=24.71 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=10.1
Q ss_pred hhccCCccceee
Q psy6417 181 QFVSAFTGRVCI 192 (194)
Q Consensus 181 qFiS~~tG~I~~ 192 (194)
|--||+|||||+
T Consensus 17 qvsspytgrvye 28 (59)
T PF08184_consen 17 QVSSPYTGRVYE 28 (59)
T ss_pred eecCCccceeEe
Confidence 556899999996
No 59
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.89 E-value=39 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=9.7
Q ss_pred CceeeecCCCCC
Q psy6417 159 KVVCILCKMKIK 170 (194)
Q Consensus 159 ~k~C~lC~~~i~ 170 (194)
|..||+|+..+.
T Consensus 154 RP~CPlCg~PlD 165 (171)
T PF11290_consen 154 RPPCPLCGEPLD 165 (171)
T ss_pred CCCCCCCCCCCC
Confidence 568999998864
No 60
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=23.77 E-value=1.3e+02 Score=24.18 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy6417 45 NLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFT 79 (194)
Q Consensus 45 ~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQIT 79 (194)
++||..+.|++.++.++.+.....+++.+|-+.++
T Consensus 88 did~~~~~l~~~~~~~~~~~~~~r~~~~~le~~~~ 122 (131)
T PRK06228 88 DLGELREAVEQEFLTLDERERSVRSALAKLESGFI 122 (131)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998876553
No 61
>PRK11087 oxidative stress defense protein; Provisional
Probab=23.44 E-value=2.3e+02 Score=24.22 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=50.2
Q ss_pred cccceeeeecC-CCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEEeeeeeehhh
Q psy6417 17 IEAAKKNSSIP-PTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEVNMARVYNWD 92 (194)
Q Consensus 17 ~d~lyakA~I~-p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEVN~ARvYNwd 92 (194)
.-+|-+.+++. +.|.+.+=+|..+.=+ +.++|.+-+.+..+...+.|+ +..+=.+.|.|..+++.-.|.|.
T Consensus 24 ~I~VtG~~~~~v~PD~a~~~~~v~~~~~-~~~~A~~~~~~~~~~v~~~L~----~~Gi~~~dI~ts~~si~p~y~~~ 95 (231)
T PRK11087 24 HIVTSGTASVDAVPDMATLAVEVNVSAK-DAATAKKQVDERVAQYLAFLE----KNGIAKKDISSANLRTQPQYDYQ 95 (231)
T ss_pred EEEEEEEEEEEecCcEEEEEEEEEEecC-CHHHHHHHHHHHHHHHHHHHH----HcCCCHHHeeecceEEeeeEecC
Confidence 34566677765 4687777777655433 677888777777666666554 34555788999999999999886
No 62
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.43 E-value=1.8e+02 Score=21.82 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6417 47 TDATALVQKNIEAAKKNLSYIEHDLDFLRD 76 (194)
Q Consensus 47 dEA~~LL~~nL~~A~~~l~~~eeDLdFLRd 76 (194)
++..++|.++++..+..++.+++-++.|.+
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (113)
T cd01109 78 PERLELLEEHREELEEQIAELQETLAYLDY 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 63
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.42 E-value=1.5e+02 Score=27.51 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.8
Q ss_pred eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6417 40 VMLEYNLTDATALVQKNIEAAKKNLSYIEHDLD 72 (194)
Q Consensus 40 VMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLd 72 (194)
++-+++++++++-|+++++.+++.+++++++|+
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~ 266 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEKLE 266 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999864
No 64
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=22.84 E-value=1e+02 Score=26.21 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=36.6
Q ss_pred ceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 39 NVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 39 NVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
-|-.-++-++|.++..+-+..+-+-+.+-..+.+-|+|+++|
T Consensus 170 ~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~s 211 (245)
T TIGR00112 170 GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTS 211 (245)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCC
Confidence 344567889999999999999999998888899999999986
No 65
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.76 E-value=64 Score=31.71 Aligned_cols=33 Identities=36% Similarity=0.416 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhccceeEE
Q psy6417 50 TALVQKNIEAAKKNLSYIEHDLDFLRDQFTTTEV 83 (194)
Q Consensus 50 ~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTtEV 83 (194)
.++++ +|+..+++|++++++++=|.+++..+|-
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 34566 9999999999999999999998877664
No 66
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.60 E-value=98 Score=23.50 Aligned_cols=39 Identities=28% Similarity=0.197 Sum_probs=31.9
Q ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 42 LEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 42 LEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
.=++-++|.++...-+..+-+-+.+-..+.+=|+++++|
T Consensus 34 ~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~t 72 (107)
T PF14748_consen 34 QGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTT 72 (107)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccC
Confidence 446889999999999999999999888899999999976
No 67
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=21.66 E-value=1.3e+02 Score=20.54 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcc
Q psy6417 55 KNIEAAKKNLSYIEHDLDFLRDQF 78 (194)
Q Consensus 55 ~nL~~A~~~l~~~eeDLdFLRdQI 78 (194)
+-+..|..++.....-|++|++++
T Consensus 32 k~~~~a~~~l~es~~ki~~L~~~L 55 (57)
T smart00742 32 KVLSEAQSMLRESNQKLDLLKEEL 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999876
No 68
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.63 E-value=46 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCCCCccccCCCcccCCceeeecC-CCCCCCCCCHHHHHhhccCCccc
Q psy6417 143 ASNKPAEDLKNPFQKEKVVCILCK-MKIKPDYKNIKLLSQFVSAFTGR 189 (194)
Q Consensus 143 ~~~~p~~~~~~Py~k~~k~C~lC~-~~i~iDYKNV~LLsqFiS~~tG~ 189 (194)
++.+.....-+-|.+--+.+.-++ +.++|+==|==||+||+||+|.+
T Consensus 139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~ 186 (363)
T COG1902 139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNK 186 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCC
Confidence 333334444456766666777777 56788888888999999998764
No 69
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.06 E-value=1.9e+02 Score=24.37 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccce
Q psy6417 45 NLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTT 80 (194)
Q Consensus 45 ~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITT 80 (194)
++++..++|+.+++.....++++++.|+.+-|.|-.
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs 117 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS 117 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455888999999999999999999999999988754
No 70
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.88 E-value=97 Score=23.72 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=24.6
Q ss_pred ccceeeeechHHHHHHHHHHHHHHHHHHHH
Q psy6417 37 GANVMLEYNLTDATALVQKNIEAAKKNLSY 66 (194)
Q Consensus 37 GANVMLEY~ldEA~~LL~~nL~~A~~~l~~ 66 (194)
|=+||-==+.+||-+-|.+.++.|+..|..
T Consensus 57 gy~v~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 57 GYGVATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456666667899999999999999988764
No 71
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=20.78 E-value=2e+02 Score=22.76 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=33.9
Q ss_pred CeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6417 30 DKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLD 72 (194)
Q Consensus 30 d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLd 72 (194)
+.|---||-+.+++=+-+++..+|...+.=.++|++.++.-|+
T Consensus 50 kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~ 92 (99)
T PF13758_consen 50 KEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLE 92 (99)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455568888999999999999998888777777777776554
No 72
>KOG4098|consensus
Probab=20.25 E-value=1.4e+02 Score=25.08 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred CCCeEEEEeccceeeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccc
Q psy6417 28 PTDKVCLWLGANVMLEYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFT 79 (194)
Q Consensus 28 p~d~V~LWLGANVMLEY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQIT 79 (194)
|+-+++ -+=.+|.+||++.|.+=.|+.|.++.+.-+..+.++|.=.---++
T Consensus 60 p~RKCf-RmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kEln 110 (140)
T KOG4098|consen 60 PTRKCF-RMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELN 110 (140)
T ss_pred hhhHHH-HHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443443 344579999999999999999999888888887777755444443
No 73
>KOG2878|consensus
Probab=20.09 E-value=66 Score=29.37 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=51.3
Q ss_pred ceeeeechH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-hHhccceeEEeeeeeehhhHHhhhhhhhcccccchhhhc
Q psy6417 39 NVMLEYNLT-----DATALVQKNIEAAKKNLSYIEHDLDF-LRDQFTTTEVNMARVYNWDVKRRNQLKMGLEKSNRLRQM 112 (194)
Q Consensus 39 NVMLEY~ld-----EA~~LL~~nL~~A~~~l~~~eeDLdF-LRdQITTtEVN~ARvYNwdV~rrr~~k~~~~~~~~~~~~ 112 (194)
.-||-|..- +|.+.|+..+.-..+.|+....=++= +..-|-.+--|+.-||-|-.++--+.++...++|+=.|.
T Consensus 159 GWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV 238 (282)
T KOG2878|consen 159 GWMLGFKPLPADVVKAVDPLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEV 238 (282)
T ss_pred cccccccccchhheeccCcccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHH
Confidence 346655432 56667776676666666665443332 444455566688999999999988899999999987664
Q ss_pred c
Q psy6417 113 T 113 (194)
Q Consensus 113 ~ 113 (194)
-
T Consensus 239 ~ 239 (282)
T KOG2878|consen 239 N 239 (282)
T ss_pred H
Confidence 3
No 74
>PRK07680 late competence protein ComER; Validated
Probab=20.08 E-value=1.2e+02 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=32.9
Q ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccee
Q psy6417 43 EYNLTDATALVQKNIEAAKKNLSYIEHDLDFLRDQFTTT 81 (194)
Q Consensus 43 EY~ldEA~~LL~~nL~~A~~~l~~~eeDLdFLRdQITTt 81 (194)
-++-++|.+++..-+..+-+-+.+-..+.+-|+|+++|-
T Consensus 192 Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~l~~~v~sp 230 (273)
T PRK07680 192 NISKEEATTLASEMLIGMGKLLEKGLYTLPTLQEKVCVK 230 (273)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCC
Confidence 368889999999998888877777777899999999864
Done!